Query 001255
Match_columns 1113
No_of_seqs 291 out of 646
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 99.9 1.5E-24 5E-29 237.7 22.7 213 885-1100 21-249 (249)
2 2of3_A ZYG-9; multifunctional 99.9 1.7E-23 5.8E-28 227.6 24.9 210 883-1101 49-265 (266)
3 2qk2_A LP04448P; mini spindles 99.9 5E-22 1.7E-26 216.4 23.0 215 884-1102 19-236 (242)
4 2bpt_A Importin beta-1 subunit 99.8 2.2E-16 7.6E-21 202.0 57.0 443 497-1083 342-823 (861)
5 4ffb_C Protein STU2; tubulin f 99.8 4.6E-20 1.6E-24 205.4 18.5 208 494-704 17-237 (278)
6 2of3_A ZYG-9; multifunctional 99.8 1.5E-19 5.3E-24 196.5 21.0 207 487-709 49-262 (266)
7 2qk1_A Protein STU2; STU2P, XM 99.8 9.4E-20 3.2E-24 199.5 19.2 207 495-705 25-243 (249)
8 2bpt_A Importin beta-1 subunit 99.8 5.5E-16 1.9E-20 198.4 52.4 441 495-1086 233-725 (861)
9 2qk2_A LP04448P; mini spindles 99.8 7.2E-19 2.5E-23 191.4 20.9 208 494-708 23-231 (242)
10 1b3u_A Protein (protein phosph 99.8 2.8E-16 9.4E-21 192.0 44.5 556 28-1070 14-585 (588)
11 4fdd_A Transportin-1; heat rep 99.8 4.1E-16 1.4E-20 200.2 45.9 432 496-1085 225-712 (852)
12 1u6g_C TIP120 protein, CAND1; 99.8 4.2E-16 1.4E-20 207.9 45.3 562 23-1085 47-697 (1230)
13 4ffb_C Protein STU2; tubulin f 99.8 2.9E-18 1E-22 190.8 19.1 215 885-1102 14-246 (278)
14 1qgr_A Protein (importin beta 99.8 1.7E-14 5.8E-19 185.0 56.0 445 497-1082 339-838 (876)
15 4fdd_A Transportin-1; heat rep 99.7 1.8E-14 6.1E-19 185.0 47.3 580 23-1084 127-754 (852)
16 1b3u_A Protein (protein phosph 99.7 3.7E-15 1.3E-19 181.9 38.5 420 494-1085 134-566 (588)
17 1qgr_A Protein (importin beta 99.7 3.6E-13 1.2E-17 172.6 54.7 425 494-1071 374-870 (876)
18 1u6g_C TIP120 protein, CAND1; 99.6 1.9E-13 6.6E-18 182.2 41.0 439 486-1088 8-523 (1230)
19 2iw3_A Elongation factor 3A; a 99.5 7.7E-14 2.6E-18 176.2 17.6 213 883-1103 17-238 (986)
20 1ibr_B P95, importin beta-1 su 99.5 4.4E-11 1.5E-15 141.1 33.8 396 485-1086 2-453 (462)
21 2jdq_A Importin alpha-1 subuni 99.2 1.7E-08 5.8E-13 118.7 34.0 388 486-1071 22-442 (450)
22 4b8j_A Importin subunit alpha- 99.1 4.8E-08 1.6E-12 118.0 35.4 402 484-1084 74-509 (528)
23 1wa5_B Importin alpha subunit; 99.1 3.8E-08 1.3E-12 119.0 32.3 390 485-1073 88-511 (530)
24 1ibr_B P95, importin beta-1 su 99.1 4.3E-08 1.5E-12 115.4 29.7 365 487-1053 41-461 (462)
25 2vgl_B AP-2 complex subunit be 99.0 1.1E-07 3.7E-12 116.9 32.2 168 494-682 94-268 (591)
26 2vgl_B AP-2 complex subunit be 99.0 3E-07 1E-11 112.9 33.1 176 486-683 15-190 (591)
27 2jdq_A Importin alpha-1 subuni 98.9 5.1E-07 1.7E-11 106.0 30.3 178 897-1075 206-393 (450)
28 3ul1_B Importin subunit alpha- 98.8 3.3E-06 1.1E-10 101.6 31.4 391 485-1072 58-478 (510)
29 3tpo_A Importin subunit alpha- 98.7 1.1E-05 3.8E-10 97.5 35.7 393 485-1072 77-497 (529)
30 1wa5_B Importin alpha subunit; 98.7 4.8E-06 1.6E-10 100.5 32.4 178 897-1075 271-460 (530)
31 4b8j_A Importin subunit alpha- 98.6 3.3E-05 1.1E-09 93.0 33.1 189 882-1075 246-446 (528)
32 1w63_A Adapter-related protein 98.6 9.7E-06 3.3E-10 100.0 28.6 162 897-1074 327-492 (618)
33 2z6g_A B-catenin; FULL-length, 98.6 0.00012 4.2E-09 92.6 39.1 412 497-1072 204-663 (780)
34 2z6h_A Catenin beta-1, beta-ca 98.5 0.00022 7.6E-09 88.2 37.8 413 497-1072 68-527 (644)
35 1jdh_A Beta-catenin; beta-cate 98.5 0.00057 1.9E-08 81.7 39.9 409 497-1069 71-527 (529)
36 4db8_A Armadillo-repeat protei 98.4 8.1E-06 2.8E-10 87.9 18.8 188 879-1071 11-208 (252)
37 4db6_A Armadillo repeat protei 98.4 9.9E-06 3.4E-10 84.7 18.7 184 882-1071 14-208 (210)
38 4hxt_A De novo protein OR329; 98.4 7.6E-06 2.6E-10 87.6 17.8 192 882-1079 46-248 (252)
39 1w63_A Adapter-related protein 98.3 1.4E-05 4.8E-10 98.5 21.0 170 494-681 150-341 (618)
40 4hxt_A De novo protein OR329; 98.3 1.5E-05 5E-10 85.4 18.5 186 882-1072 4-199 (252)
41 1wa5_C Importin alpha RE-expor 98.3 0.0026 8.8E-08 82.4 43.1 185 898-1087 614-807 (960)
42 2iw3_A Elongation factor 3A; a 98.3 4.6E-06 1.6E-10 105.8 15.5 200 881-1091 96-301 (986)
43 3ltm_A Alpha-REP4; protein eng 98.3 1.8E-05 6E-10 83.1 17.2 151 881-1070 20-170 (211)
44 3ltj_A Alpharep-4; protein eng 98.3 2.6E-05 8.8E-10 81.1 18.0 150 882-1070 16-165 (201)
45 1xqr_A HSPBP1 protein; armadil 98.2 2.5E-05 8.7E-10 87.0 18.1 216 881-1100 29-265 (296)
46 4db8_A Armadillo-repeat protei 98.2 1.1E-05 3.9E-10 86.7 14.1 185 882-1072 56-251 (252)
47 3ltm_A Alpha-REP4; protein eng 98.1 2.1E-05 7.2E-10 82.5 14.1 154 881-1073 51-204 (211)
48 3ltj_A Alpharep-4; protein eng 98.1 3.8E-05 1.3E-09 79.8 15.0 151 881-1070 46-196 (201)
49 2x1g_F Cadmus; transport prote 98.1 0.0011 3.9E-08 85.8 32.1 184 897-1085 520-735 (971)
50 2vgl_A Adaptor protein complex 98.0 0.001 3.5E-08 81.8 28.7 177 884-1076 372-554 (621)
51 3now_A UNC-45 protein, SD10334 98.0 0.0037 1.3E-07 78.3 33.2 409 494-1071 338-781 (810)
52 2z6g_A B-catenin; FULL-length, 98.0 0.0036 1.2E-07 79.1 33.4 145 926-1072 361-518 (780)
53 1oyz_A Hypothetical protein YI 98.0 0.00014 4.7E-09 79.8 17.9 163 882-1070 56-219 (280)
54 2vgl_A Adaptor protein complex 98.0 0.005 1.7E-07 75.7 33.0 131 487-633 77-213 (621)
55 1oyz_A Hypothetical protein YI 97.9 0.00018 6.2E-09 78.8 16.7 160 881-1070 24-186 (280)
56 2x1g_F Cadmus; transport prote 97.8 0.0032 1.1E-07 81.6 29.4 150 921-1073 687-859 (971)
57 3b2a_A TON_1937, putative unch 97.8 0.00043 1.5E-08 72.3 16.2 145 924-1075 32-182 (265)
58 4db6_A Armadillo repeat protei 97.8 0.0003 1E-08 73.2 14.9 147 926-1073 13-168 (210)
59 2db0_A 253AA long hypothetical 97.7 0.0032 1.1E-07 63.2 19.9 174 486-683 34-211 (253)
60 1wa5_C Importin alpha RE-expor 97.7 0.078 2.7E-06 68.5 39.3 185 497-689 416-635 (960)
61 3b2a_A TON_1937, putative unch 97.7 0.00097 3.3E-08 69.7 16.7 182 882-1071 35-217 (265)
62 3now_A UNC-45 protein, SD10334 97.7 0.063 2.2E-06 67.2 35.8 443 487-1072 249-737 (810)
63 2x19_B Importin-13; nuclear tr 97.6 0.049 1.7E-06 70.2 34.3 134 938-1075 698-849 (963)
64 3ul1_B Importin subunit alpha- 97.5 0.002 6.7E-08 77.4 19.5 188 881-1071 58-260 (510)
65 4hat_C Exportin-1; heat repeat 97.5 0.0016 5.5E-08 84.4 19.7 196 896-1092 466-696 (1023)
66 3m1i_C Exportin-1; heat repeat 97.5 0.11 3.7E-06 67.9 36.6 164 921-1085 340-590 (1049)
67 1xqr_A HSPBP1 protein; armadil 97.4 0.0059 2E-07 67.8 19.0 184 882-1071 83-286 (296)
68 3tpo_A Importin subunit alpha- 97.4 0.0037 1.3E-07 75.3 18.7 190 882-1072 206-406 (529)
69 3m1i_C Exportin-1; heat repeat 97.3 0.0071 2.4E-07 79.1 21.6 188 896-1085 466-689 (1049)
70 2db0_A 253AA long hypothetical 97.1 0.025 8.5E-07 56.9 18.0 173 882-1073 34-211 (253)
71 2z6h_A Catenin beta-1, beta-ca 97.1 0.013 4.5E-07 72.2 20.3 186 881-1071 15-211 (644)
72 1jdh_A Beta-catenin; beta-cate 97.0 0.013 4.5E-07 69.7 18.8 140 882-1026 19-168 (529)
73 1mhq_A ADP-ribosylation factor 96.9 0.015 5E-07 57.6 14.7 111 494-615 13-131 (148)
74 2x19_B Importin-13; nuclear tr 96.9 0.012 4.2E-07 75.9 17.8 200 882-1085 488-727 (963)
75 1te4_A Conserved protein MTH18 96.6 0.00023 7.8E-09 68.9 -1.0 116 927-1068 14-129 (131)
76 3g2s_A C-terminal fragment of 96.5 0.034 1.2E-06 54.9 13.9 112 494-616 23-142 (149)
77 1juq_A ADP-ribosylation factor 96.5 0.032 1.1E-06 56.4 14.0 111 494-615 25-143 (171)
78 3gjx_A Exportin-1; transport, 96.4 0.05 1.7E-06 70.5 18.5 196 890-1087 487-717 (1073)
79 3ldz_A STAM-1, signal transduc 96.4 0.031 1.1E-06 54.7 12.7 106 494-610 17-124 (140)
80 3oc3_A Helicase MOT1, MOT1; re 96.4 0.011 3.7E-07 69.0 10.6 183 882-1071 176-403 (800)
81 3opb_A SWI5-dependent HO expre 96.4 3.2 0.00011 51.4 33.2 131 942-1073 576-729 (778)
82 3oc3_A Helicase MOT1, MOT1; re 96.4 0.0096 3.3E-07 69.4 10.0 139 926-1071 175-327 (800)
83 1elk_A Target of MYB1; superhe 96.3 0.031 1.1E-06 55.8 12.3 104 494-608 28-138 (157)
84 1x5b_A Signal transducing adap 96.2 0.046 1.6E-06 54.9 13.2 102 494-609 27-134 (163)
85 3nmw_A APC variant protein; AR 96.1 0.081 2.8E-06 60.1 16.2 186 882-1073 129-335 (354)
86 3a6p_A Exportin-5; exportin-5, 96.0 3.7 0.00013 54.2 33.8 101 496-600 57-162 (1204)
87 3nmz_A APC variant protein; pr 96.0 0.2 7E-06 58.8 19.4 185 882-1072 245-450 (458)
88 3gs3_A Symplekin, LD45768P; he 95.8 1.3 4.6E-05 47.6 23.1 138 881-1029 16-172 (257)
89 3l9t_A Putative uncharacterize 95.7 0.17 5.7E-06 53.5 15.0 180 881-1084 38-219 (240)
90 3nmw_A APC variant protein; AR 95.6 0.39 1.3E-05 54.5 19.1 174 898-1071 99-291 (354)
91 3rru_A TOM1L1 protein; structu 95.6 0.053 1.8E-06 53.7 10.3 106 494-610 28-140 (152)
92 3o2t_A Symplekin; heat repeat, 95.6 0.63 2.2E-05 53.0 20.4 186 879-1075 24-259 (386)
93 3zyq_A Hepatocyte growth facto 95.5 0.094 3.2E-06 55.6 12.5 103 494-610 20-128 (226)
94 1xm9_A Plakophilin 1; armadill 95.4 0.27 9.1E-06 57.8 17.2 181 882-1071 4-219 (457)
95 3tjz_B Coatomer subunit gamma; 95.3 0.058 2E-06 61.1 10.5 120 957-1085 58-181 (355)
96 3nmz_A APC variant protein; pr 95.2 0.44 1.5E-05 56.0 18.3 173 899-1071 216-407 (458)
97 3ibv_A Exportin-T; karyopherin 95.1 11 0.00038 48.5 32.4 154 921-1075 328-527 (980)
98 1xm9_A Plakophilin 1; armadill 94.9 0.29 9.9E-06 57.5 15.7 144 927-1073 4-173 (457)
99 1dvp_A HRS, hepatocyte growth 94.9 0.15 5.1E-06 53.8 11.7 104 488-606 12-121 (220)
100 3ibv_A Exportin-T; karyopherin 94.6 0.19 6.5E-06 64.9 13.9 114 897-1011 457-588 (980)
101 3opb_A SWI5-dependent HO expre 94.0 0.87 3E-05 56.3 17.1 146 927-1072 459-635 (778)
102 1te4_A Conserved protein MTH18 93.7 0.077 2.6E-06 50.7 5.8 115 883-1026 15-129 (131)
103 3ldz_A STAM-1, signal transduc 93.6 0.45 1.5E-05 46.4 11.1 93 903-1000 25-119 (140)
104 1vdy_A Hypothetical protein (R 93.5 0.21 7.2E-06 48.5 8.5 92 901-996 29-131 (140)
105 1mhq_A ADP-ribosylation factor 93.5 0.88 3E-05 44.7 13.2 92 903-999 21-120 (148)
106 1x5b_A Signal transducing adap 93.2 0.44 1.5E-05 47.7 10.7 93 903-1000 35-130 (163)
107 3l6x_A Catenin delta-1; cateni 93.1 0.99 3.4E-05 54.5 15.5 113 881-996 49-164 (584)
108 3l6x_A Catenin delta-1; cateni 93.0 1.7 5.7E-05 52.5 17.2 144 927-1071 310-475 (584)
109 1juq_A ADP-ribosylation factor 93.0 1.3 4.4E-05 44.6 13.8 93 902-999 32-132 (171)
110 3grl_A General vesicular trans 93.0 1.4 4.8E-05 53.1 16.2 149 882-1031 62-242 (651)
111 4ady_A RPN2, 26S proteasome re 93.0 1.4 4.7E-05 55.7 16.8 165 882-1071 509-675 (963)
112 3g2s_A C-terminal fragment of 92.9 1 3.5E-05 44.3 12.5 93 902-999 30-130 (149)
113 1vsy_5 Proteasome activator BL 92.6 0.24 8.2E-06 63.7 9.7 173 920-1094 796-988 (997)
114 3tt9_A Plakophilin-2; cell adh 92.6 0.83 2.8E-05 48.5 12.4 153 927-1083 10-190 (233)
115 3tt9_A Plakophilin-2; cell adh 92.5 1.8 6E-05 45.9 14.7 114 881-996 9-125 (233)
116 1elk_A Target of MYB1; superhe 91.9 1.1 3.6E-05 44.6 11.4 92 903-999 36-134 (157)
117 4hat_C Exportin-1; heat repeat 91.9 1.8 6.1E-05 56.1 16.6 168 922-1089 448-637 (1023)
118 3tjz_B Coatomer subunit gamma; 91.7 2.7 9.2E-05 47.4 15.8 177 898-1085 42-218 (355)
119 3a6p_A Exportin-5; exportin-5, 91.6 3.2 0.00011 54.8 18.9 161 936-1100 543-735 (1204)
120 3l9t_A Putative uncharacterize 90.9 2.1 7.3E-05 45.1 12.8 117 64-185 102-219 (240)
121 4gmo_A Putative uncharacterize 90.5 1.8 6.1E-05 53.5 14.1 90 882-975 36-128 (684)
122 4ady_A RPN2, 26S proteasome re 90.0 5.6 0.00019 50.3 17.7 129 35-173 519-676 (963)
123 3u0r_A Apoptosis inhibitor 5; 89.5 16 0.00056 42.3 19.5 104 924-1034 64-167 (507)
124 3zyq_A Hepatocyte growth facto 89.3 2.9 9.8E-05 44.1 12.5 94 902-1000 27-123 (226)
125 3u0r_A Apoptosis inhibitor 5; 89.0 18 0.00061 42.0 19.4 65 923-997 98-162 (507)
126 4atg_A TAF6; transcription, TF 89.0 7.7 0.00026 39.7 14.9 124 501-631 23-157 (196)
127 4atg_A TAF6; transcription, TF 88.8 3.4 0.00012 42.4 12.1 131 899-1038 24-166 (196)
128 1dvp_A HRS, hepatocyte growth 87.8 3.4 0.00012 43.3 11.8 91 903-998 25-118 (220)
129 1vdy_A Hypothetical protein (R 86.1 2 6.9E-05 41.6 8.0 104 490-600 16-130 (140)
130 3dad_A FH1/FH2 domain-containi 83.5 22 0.00074 39.5 15.8 160 487-687 121-291 (339)
131 3grl_A General vesicular trans 83.5 9.5 0.00033 46.0 14.0 71 1001-1072 122-195 (651)
132 3gjx_A Exportin-1; transport, 81.8 14 0.00049 47.7 15.8 81 921-1001 562-650 (1073)
133 3o2t_A Symplekin; heat repeat, 79.6 36 0.0012 38.6 16.3 154 486-680 27-181 (386)
134 3rru_A TOM1L1 protein; structu 79.3 4.1 0.00014 40.1 7.4 92 903-999 36-134 (152)
135 1sz9_A PCF11 protein; RNA poly 78.8 6.2 0.00021 38.4 8.5 75 922-996 40-115 (144)
136 1upk_A MO25 protein; transfera 77.4 45 0.0015 36.9 15.6 112 882-996 166-284 (341)
137 1vsy_5 Proteasome activator BL 76.4 17 0.00057 46.8 13.8 188 883-1075 136-368 (997)
138 4flb_A Regulation of nuclear P 75.5 14 0.00047 35.1 9.9 98 504-613 21-126 (132)
139 4gmo_A Putative uncharacterize 74.9 13 0.00043 45.8 12.0 70 930-1001 39-111 (684)
140 1sz9_A PCF11 protein; RNA poly 73.5 17 0.00058 35.3 10.0 127 60-197 6-134 (144)
141 4fu3_A Regulation of nuclear P 71.7 13 0.00045 35.4 8.7 102 505-618 21-132 (135)
142 3gs3_A Symplekin, LD45768P; he 70.9 69 0.0024 34.1 15.0 69 1001-1074 53-121 (257)
143 3jxy_A Alkylpurine DNA glycosy 70.4 21 0.00072 37.4 10.8 133 938-1083 74-206 (232)
144 3qml_C Protein SLS1, nucleotid 69.0 84 0.0029 34.3 15.0 177 899-1079 44-254 (315)
145 1upk_A MO25 protein; transfera 67.3 1.6E+02 0.0053 32.6 20.8 176 881-1066 79-277 (341)
146 3dad_A FH1/FH2 domain-containi 67.3 1.6E+02 0.0053 32.6 20.3 111 882-997 120-233 (339)
147 1inz_A EPS15-interacting porte 61.0 33 0.0011 33.4 9.1 74 921-994 55-139 (148)
148 1w9c_A CRM1 protein, exportin 60.1 2E+02 0.007 31.5 17.7 134 899-1041 45-188 (321)
149 1eyh_A Epsin; superhelix of he 59.2 33 0.0011 33.3 8.7 74 921-994 37-121 (144)
150 3fga_B Serine/threonine-protei 56.4 34 0.0012 38.9 9.5 96 504-601 269-367 (403)
151 3d9j_A RNA-binding protein 16; 55.2 86 0.0029 30.2 11.1 79 922-1000 39-126 (145)
152 2npp_B PP2A, B subunit, serine 53.8 25 0.00084 40.7 8.0 93 504-602 302-401 (449)
153 2km4_A Regulator of TY1 transp 53.7 93 0.0032 29.8 11.0 95 504-607 19-124 (142)
154 2b6c_A Hypothetical protein EF 52.7 48 0.0017 34.3 9.5 132 937-1082 67-198 (220)
155 1lrv_A LRV, leucine-rich repea 48.4 8 0.00027 41.2 2.6 90 930-1066 151-240 (244)
156 1lsh_A Lipovitellin (LV-1N, LV 48.1 1.6E+02 0.0055 38.0 15.3 131 927-1069 393-540 (1056)
157 1eyh_A Epsin; superhelix of he 48.0 40 0.0014 32.6 7.3 73 526-599 37-121 (144)
158 4flb_A Regulation of nuclear P 45.5 68 0.0023 30.2 8.5 109 63-178 6-119 (132)
159 2wy4_A Single domain haemoglob 45.0 2E+02 0.0067 26.9 12.1 46 138-184 94-139 (140)
160 3onk_A Epsin-3, ENT3; helix, p 44.7 68 0.0023 31.3 8.3 74 921-994 43-128 (150)
161 2npp_B PP2A, B subunit, serine 44.6 59 0.002 37.6 9.2 95 901-1000 302-403 (449)
162 1inz_A EPS15-interacting porte 43.6 54 0.0018 31.9 7.4 74 526-599 55-139 (148)
163 2f31_A Diaphanous protein homo 42.8 1.8E+02 0.0063 30.1 12.2 109 17-134 4-128 (233)
164 1ho8_A Vacuolar ATP synthase s 41.5 53 0.0018 38.2 8.1 124 938-1073 334-477 (480)
165 3d9j_A RNA-binding protein 16; 39.9 1.3E+02 0.0045 28.9 9.7 84 529-615 41-135 (145)
166 1vsy_4 Proteasome activator BL 38.4 1.5E+02 0.0051 37.0 12.2 116 960-1075 333-458 (799)
167 4fu3_A Regulation of nuclear P 38.3 76 0.0026 29.9 7.6 106 882-1000 9-120 (135)
168 1w9c_A CRM1 protein, exportin 37.4 1.5E+02 0.005 32.7 10.5 165 897-1071 136-317 (321)
169 3qwp_A SET and MYND domain-con 34.7 3E+02 0.01 31.3 13.3 106 897-1003 284-391 (429)
170 1xgw_A Epsin 4; ENTH, enthopro 34.4 1.2E+02 0.0043 30.2 8.6 74 921-994 66-151 (176)
171 3gvo_A Pumilio 2, pumilio homo 33.7 2.4E+02 0.008 31.1 11.9 73 903-975 37-120 (351)
172 3onk_A Epsin-3, ENT3; helix, p 33.0 1E+02 0.0036 29.9 7.6 73 526-599 43-128 (150)
173 3n71_A Histone lysine methyltr 32.8 5.4E+02 0.018 29.8 15.3 85 921-1006 330-416 (490)
174 1xgw_A Epsin 4; ENTH, enthopro 32.3 1.3E+02 0.0046 30.0 8.4 96 496-599 44-151 (176)
175 3bwt_A Protein PUF4; pumilio, 31.1 5.3E+02 0.018 27.8 15.0 71 906-976 27-108 (333)
176 2km4_A Regulator of TY1 transp 30.6 1.3E+02 0.0045 28.7 7.9 111 64-178 5-122 (142)
177 1sct_B Hemoglobin II (carbonmo 28.8 2.5E+02 0.0085 26.7 9.7 36 139-174 114-150 (151)
178 3ebb_A Phospholipase A2-activa 27.5 6.1E+02 0.021 27.3 15.8 102 893-995 113-220 (304)
179 1ho8_A Vacuolar ATP synthase s 27.1 3.6E+02 0.012 31.3 11.9 70 924-995 394-476 (480)
180 2b6c_A Hypothetical protein EF 26.7 2.1E+02 0.0073 29.3 9.3 95 88-193 113-210 (220)
181 2bnx_A Diaphanous protein homo 26.4 3.8E+02 0.013 30.1 12.0 109 17-134 8-132 (386)
182 2fv2_A RCD1 required for cell 25.4 6.3E+02 0.021 26.8 13.9 142 882-1029 5-173 (268)
183 1lsh_A Lipovitellin (LV-1N, LV 25.3 2.1E+02 0.0071 36.9 10.7 154 898-1069 410-573 (1056)
184 3s4w_B Protein FACD2, fanconi 23.3 9.5E+02 0.033 31.5 16.0 169 899-1076 361-553 (1323)
185 2jtt_C Calcyclin-binding prote 23.1 65 0.0022 23.3 2.9 25 145-169 8-32 (35)
186 4f52_E Glomulin; cullin-ring E 23.1 8E+02 0.027 29.2 14.5 105 532-637 319-432 (596)
187 2vhb_A Hemoglobin; heme, respi 22.4 4.8E+02 0.016 24.3 12.7 128 47-184 9-142 (146)
188 2ysk_A Hypothetical protein TT 21.6 5.3E+02 0.018 24.5 11.4 118 571-702 18-140 (145)
189 3gvo_A Pumilio 2, pumilio homo 21.4 6.1E+02 0.021 27.6 12.5 15 961-975 178-192 (351)
190 1h2v_C 80 kDa nuclear CAP bind 20.1 1E+03 0.034 29.4 14.9 65 1009-1076 96-163 (771)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-24 Score=237.66 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=193.0
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHH-HHhcCCchhh-HHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhch-hhh
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIK-ASVANDHSIW-TKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQK-DVM 960 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~-~l~~~~~~~~-~~~f~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~-~~~ 960 (1113)
+...+..++ |++|++|+++|.. ++.......+ ..+|.+++..|.+++ .|+|..||..|+++|+.|++.++ ..|
T Consensus 21 f~~~l~s~~---w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSK---WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHHTCSS---HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHhhcCC---HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 445565555 8999999999999 8865432222 457889999999999 89999999999999999999999 899
Q ss_pred h-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc------C-hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 961 E-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY------D-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 961 ~-~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~------~-p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
. +|+..++|.||++++|+++.|++++..|+.+|+..+ + ++.+++.|.+.+++++|+.+.+++.+|..+++..
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 9 999999999999999999999999999999999998 6 7789999999999999999999999999999988
Q ss_pred CH--HHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHhh
Q 001255 1033 SQ--EELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRI 1100 (1113)
Q Consensus 1033 ~~--~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R~ 1100 (1113)
+. ..+.+++ +.++|.+.++++|++++||++|.+||..+|.++|+ +|.||++.|++.+++.|.+|++++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~~ 249 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKTL 249 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC-
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 85 6777899 99999999999999999999999999999999997 699999999999999999999874
No 2
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.92 E-value=1.7e-23 Score=227.58 Aligned_cols=210 Identities=13% Similarity=0.181 Sum_probs=186.6
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch---hh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK---DV 959 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~---~~ 959 (1113)
.++...|-.++ |++|.+|++.|.+.+..... ....+++-++.|+.-++.|+|.+|...+|.+|..++..++ +.
T Consensus 49 ~~~~~~lfs~d---~k~~~~ale~L~~~l~~~~~-~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 49 VSLMSQLFHKD---FKQHLAALDSLVRLADTSPR-SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHHTCSC---HHHHHHHHHHHHHHHHHCHH-HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555665554 79999999999999876543 3345677778888778889999999999999999998774 45
Q ss_pred hhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 960 MEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 960 ~~~~-~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
+..| +..++|.|++++||+++.||+++.++++.+...++|.++++++..++++++|+++.+|++++..+++.+|...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-- 202 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-- 202 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--
Confidence 7777 7899999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred hhhhhHH---HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHHHHhhh
Q 001255 1039 AQLPSFL---PALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS 1101 (1113)
Q Consensus 1039 ~~L~~li---p~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~yi~R~~ 1101 (1113)
...+ |.|.++++|+|++||++|.+|++++|.++||.+|+|+++|++.++.+|+++|+|+.
T Consensus 203 ---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 203 ---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp ---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred ---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 2345 99999999999999999999999999999999999999999999999999999963
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=5e-22 Score=216.43 Aligned_cols=215 Identities=13% Similarity=0.159 Sum_probs=195.3
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 884 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 884 ~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
+++..+.+.+ |++|++|+..|..++..... ....++.+++..|..++. |.|..||..|+.+|..|++.++..|++
T Consensus 19 ~l~~~l~s~~---w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEKK---WTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp THHHHHTCSS---HHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHhhhccCC---HHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4666776655 89999999999999987432 123467899999999995 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHH-HHhhh
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE-LMAQL 1041 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~-l~~~L 1041 (1113)
|++.++|.|+++++|++..||++|..|+..++..+++..+++.+...+.+++|+.+..++.+|..++..++++. ...++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887653 45788
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHhhhc
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
+.++|.+..+++|++++||++|..||..++.++|+ .+.+|++.|++.+++.|..|++++.-
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 59999999999999999999999743
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.84 E-value=2.2e-16 Score=202.05 Aligned_cols=443 Identities=14% Similarity=0.179 Sum_probs=297.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhC-cchHHHHHHHHHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR-KPFESYMERILPH 575 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~-~~~~~~l~~ll~~ 575 (1113)
+.+|..|..+...|..+...... .-+..+++.+...+.|.++++-..++.+|+.++..++ ..+.+|+..++|.
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~ 415 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGN------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS 415 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHccH------hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35699999999999888765432 2456788888999999999999999999999997765 5678999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhCCc--------cchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhc-cCCCCCC
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVSKTYSV--------DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA-MNSEGSG 646 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~e~~~~--------~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~-~~~~~~~ 646 (1113)
|+..+.|..+.||..+..+|..+.+.++. +.+++.|...+.+ +|+++..++.-+......+. .....+
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l- 492 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPI- 492 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGG-
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhh-
Confidence 99999999999999999999999876543 2355566655544 38999887766654333221 001111
Q ss_pred ChhhHHHHHHhHccccC--CCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 001255 647 NLGILKLWLAKLTPLVH--DKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 724 (1113)
Q Consensus 647 ~~~~~~~~l~~l~~~~~--d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~ 724 (1113)
...+...+..++..+. |.++.||.++..+|+.+....+.. +..++. .+ ++ .+...+.
T Consensus 493 -~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~--------~l---~~--------~l~~~l~ 551 (861)
T 2bpt_A 493 -YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSA--------SI---ST--------FVMDKLG 551 (861)
T ss_dssp -GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHH--------HH---HH--------HHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHH--------HH---HH--------HHHHHHH
Confidence 1335556677777776 456899999999999998765432 222221 11 11 1111221
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhc
Q 001255 725 SKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 804 (1113)
Q Consensus 725 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~ 804 (1113)
.... .. ... . .. .+.. . ....+....+.
T Consensus 552 ~~~~---------------~~-~~i---~-~~-------------~~~~-------~------------~~~~~~~~~~~ 579 (861)
T 2bpt_A 552 QTMS---------------VD-ENQ---L-TL-------------EDAQ-------S------------LQELQSNILTV 579 (861)
T ss_dssp HHTT---------------SC-GGG---C-CH-------------HHHH-------H------------HHHHHHHHHHH
T ss_pred HHHh---------------hh-ccc---C-Ch-------------hhHH-------H------------HHHHHHHHHHH
Confidence 1100 00 000 0 00 0000 0 00000000000
Q ss_pred cccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHH
Q 001255 805 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 884 (1113)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ 884 (1113)
+... . ...+ . ++..+ ..+.++.
T Consensus 580 l~~l----------------~--~~~~--~-~~~~~-------------------------------------~~~l~~~ 601 (861)
T 2bpt_A 580 LAAV----------------I--RKSP--S-SVEPV-------------------------------------ADMLMGL 601 (861)
T ss_dssp HHHH----------------H--HHCG--G-GTGGG-------------------------------------HHHHHHH
T ss_pred HHHH----------------H--HHhh--h-hhHHH-------------------------------------HHHHHHH
Confidence 0000 0 0000 0 00000 0012455
Q ss_pred HHHHhhcCCCCCh-hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH
Q 001255 885 ILHLMCNGNDGSP-TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS 963 (1113)
Q Consensus 885 lL~~l~~~~~~~~-~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~ 963 (1113)
++..+.+.+ + ..|.+++..+..++...+. .+.+++..++..|+..+.+.+..+|..++.++..|++..+..|.+|
T Consensus 602 l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 677 (861)
T 2bpt_A 602 FFRLLEKKD---SAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677 (861)
T ss_dssp HHHHHHSTT---GGGTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH
T ss_pred HHHHHccCC---CCcHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccch
Confidence 666666554 3 5788888877777655433 2346789999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhccCC-----------hhHHHHHHHH
Q 001255 964 VEIVIEKLLHVTKDAV--PKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTED-----------EKTLVTCINC 1024 (1113)
Q Consensus 964 ~~~~l~~ll~~~~Ds~--~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~s~~-----------~~~~~~al~~ 1024 (1113)
+..+++.+++.+.|.. ..|+..+..|+..++..++.. .+++.+.+.+.... +..+..+++.
T Consensus 678 ~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~ 757 (861)
T 2bpt_A 678 SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757 (861)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999998764 789999999999999887543 34444444444221 2356788899
Q ss_pred HHHHHHhhC--HHHHHhhhhhHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHh-hhhhHhhhh
Q 001255 1025 LTKLVGRLS--QEELMAQLPSFLPALFEAFGNQ----SADVRKTVVFCLVDIYIML-GKAFLPYLE 1083 (1113)
Q Consensus 1025 L~~lie~~~--~~~l~~~L~~lip~l~~~l~D~----~seVRkaAv~clv~i~~~l-Ge~i~p~l~ 1083 (1113)
+..++..++ ++.+.+.++.+++.+.+++.|. +.+||++|..|+..+...+ |+++.+|+.
T Consensus 758 ~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~ 823 (861)
T 2bpt_A 758 YVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYG 823 (861)
T ss_dssp HHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHh
Confidence 999998887 4667788999999999999885 8899999999999999999 788888875
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.6e-20 Score=205.44 Aligned_cols=208 Identities=14% Similarity=0.199 Sum_probs=155.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchh--HHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcc------h
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQ--EVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP------F 565 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~--~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~------~ 565 (1113)
.+.|+|||+|++|++.|.++++..+.... .....+.+++.+|.+++.|+|++|++.+|++|..++..++.. +
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 57899999999999999999988654211 001125567788999999999999999999999999876543 4
Q ss_pred HHHHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHHhhCC-ccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCC
Q 001255 566 ESYMERILPHVFSR-LIDPKELVRQPCSTTLDIVSKTYS-VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE 643 (1113)
Q Consensus 566 ~~~l~~ll~~ll~k-lgD~K~~vr~~a~~~L~~i~e~~~-~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~ 643 (1113)
..++..++|.|++| +||.|..+|+.+..+|..+.+... .+.+++.|...+ .++|||++.+++.||...+.+|+...-
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 57888999999999 799999999999999999988654 566677766544 579999999999999999998843211
Q ss_pred CCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhH---HHHHHhcCCHHHHHHH
Q 001255 644 GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTA---VLNFILSLSVEEQNSL 704 (1113)
Q Consensus 644 ~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~---~~~~l~~L~~~~~~~l 704 (1113)
.....++..+..+..+++|+|++||.+|..+++.||+++|... +..++.+|++..+..+
T Consensus 176 --~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~l 237 (278)
T 4ffb_C 176 --NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDL 237 (278)
T ss_dssp --CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHH
T ss_pred --CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHH
Confidence 1112344455556678899999999999999999999887642 2345667776655544
No 6
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.83 E-value=1.5e-19 Score=196.47 Aligned_cols=207 Identities=14% Similarity=0.232 Sum_probs=170.7
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCc---
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK--- 563 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~--- 563 (1113)
.+... ++-++|||.|.+|++.|.+.+++... .+...++-++.-++-+|.|+|++|++.+|++|..++..++.
T Consensus 49 ~~~~~--~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMS--QLFHKDFKQHLAALDSLVRLADTSPR---SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHH--HHTCSCHHHHHHHHHHHHHHHHHCHH---HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH--HhcCCCHHHHHHHHHHHHHHhhhChH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555 56789999999999999999987442 12233333444444455699999999999999999987754
Q ss_pred chHHH-HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCC
Q 001255 564 PFESY-MERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNS 642 (1113)
Q Consensus 564 ~~~~~-l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~ 642 (1113)
.+.+| +..+||.|++|+||.|+.||++++..|..+.+.+++..+++.++. ...+||+|+|.++|.|+...+..|++.+
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~~ 202 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGISP 202 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSGG
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 35454 799999999999999999999999999999999999999999998 4468999999999999999999986531
Q ss_pred CCCCChhhHHHHH---HhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHh
Q 001255 643 EGSGNLGILKLWL---AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 709 (1113)
Q Consensus 643 ~~~~~~~~~~~~l---~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~ 709 (1113)
...+ +.|..+++|+|+.||.+|.++|..+|+|.|. .+..++.+||+..++++...++
T Consensus 203 ---------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd-~v~k~lg~L~~~~~~~l~er~~ 262 (266)
T 2of3_A 203 ---------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD-QMWKAAGRMADKDKSLVEERIK 262 (266)
T ss_dssp ---------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT-HHHHHHCCCCHHHHHHHHHHHH
T ss_pred ---------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhcCCHHHHHHHHHHHh
Confidence 1245 8889999999999999999999999999866 4888998899999888855544
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.4e-20 Score=199.46 Aligned_cols=207 Identities=14% Similarity=0.257 Sum_probs=173.4
Q ss_pred CCCCChhHHHHHHHHHHH-HHhcCCCchhHHHHhHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHhhC-cchH-HHHH
Q 001255 495 SPSSDWCARVSAFNYLRS-LLQQGPKGIQEVIQNFEKVMKLFFQHL-DDPHHKVAQAALSTLADIIPSCR-KPFE-SYME 570 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~-~l~~~~~~~~~v~~~l~~l~~~l~~~l-~Dsn~kV~~~~L~~l~~l~~~~~-~~~~-~~l~ 570 (1113)
+.|++|++|++|++.|.. ++++.++... ...++.++++.|.+.+ +|+|..|...++++|+.|+..++ +.|. +|+.
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~-~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKS-TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCC-TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCcccc-CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 459999999999999999 9977544220 0146678899999999 89999999999999999999999 8998 9999
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhC------C-ccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCC
Q 001255 571 RILPHVFSRLIDPKELVRQPCSTTLDIVSKTY------S-VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE 643 (1113)
Q Consensus 571 ~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~------~-~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~ 643 (1113)
.++|.|+++++|.|..|++++..+|+++.+.. + ++.+++.|+..+ +++||.+|.++|.|+...+......+.
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 99999999999999999999999999999988 6 778888888776 467999999999999988764310000
Q ss_pred CCCChhhH-HHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHH
Q 001255 644 GSGNLGIL-KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 705 (1113)
Q Consensus 644 ~~~~~~~~-~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~ 705 (1113)
.|. ..+ +..++.+..++.|.+++||.+|..+|+.||.++|.+.+..|+.+|....+..+.
T Consensus 183 ~l~--~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~ 243 (249)
T 2qk1_A 183 TLQ--RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243 (249)
T ss_dssp HHH--HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHH
Confidence 010 234 567777888899999999999999999999999998899999888777666553
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.81 E-value=5.5e-16 Score=198.35 Aligned_cols=441 Identities=13% Similarity=0.175 Sum_probs=303.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHH-HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhh------------
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE-KVMKLFFQHLDDPHHKVAQAALSTLADIIPSC------------ 561 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~-~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~------------ 561 (1113)
+.+.+|+.|..+++.|..+++.....+. +.+. .+++.+...+.|.+..|...+++.+..++...
T Consensus 233 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 309 (861)
T 2bpt_A 233 TQAEDIEVQAAAFGCLCKIMSKYYTFMK---PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQ 309 (861)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHHGGGCH---HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 3567899999999999999987554332 5677 78888888999999999999999999888763
Q ss_pred -----CcchHHHHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHHhhCCccchHHHHHHhhc---cCCCHHHHHH
Q 001255 562 -----RKPFESYMERILPHVFSRLIDP-------KELVRQPCSTTLDIVSKTYSVDSLLPALLRSLD---EQRSPKAKLA 626 (1113)
Q Consensus 562 -----~~~~~~~l~~ll~~ll~klgD~-------K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~---~~knpkvk~~ 626 (1113)
...+.+++..++|.++..|.+. ...+|..+..+|..+...++ +.+++.++.++. ...+|++|.+
T Consensus 310 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~ 388 (861)
T 2bpt_A 310 SPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREA 388 (861)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHH
Confidence 2234678899999999999742 23699999999999999887 555666666653 2468999999
Q ss_pred HHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHH
Q 001255 627 VIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRR 706 (1113)
Q Consensus 627 ~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~ 706 (1113)
++..+.. +.+. ..+..+ ...+...++.++..+.|.++.||.++..+|+.+..+.++. + .+..+.+.+..
T Consensus 389 a~~~l~~-i~~~-~~~~~~--~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~------~~~~~~~~~l~ 457 (861)
T 2bpt_A 389 AVMAFGS-IMDG-PDKVQR--TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-I------DPQQHLPGVVQ 457 (861)
T ss_dssp HHHHHHH-TSSS-SCHHHH--HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-S------CTTTTHHHHHH
T ss_pred HHHHHHH-HHcC-CCHHHH--HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh-c------CCHHHHHHHHH
Confidence 8877654 3221 000000 1234456667777889999999999999998887654321 0 01111111111
Q ss_pred HHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 001255 707 ALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMT 786 (1113)
Q Consensus 707 al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1113)
.+ ...++.. +..+.. ..
T Consensus 458 ~l-----------~~~l~~~------------------~~v~~~------a~---------------------------- 474 (861)
T 2bpt_A 458 AC-----------LIGLQDH------------------PKVATN------CS---------------------------- 474 (861)
T ss_dssp HH-----------HHHHTSC------------------HHHHHH------HH----------------------------
T ss_pred HH-----------HHHhccC------------------hHHHHH------HH----------------------------
Confidence 11 1111100 000000 00
Q ss_pred CCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCC
Q 001255 787 GSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHK 866 (1113)
Q Consensus 787 ~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1113)
..-....+... + .+...+..+
T Consensus 475 ---------~al~~l~~~~~----------------------~--~~~~~l~~~-------------------------- 495 (861)
T 2bpt_A 475 ---------WTIINLVEQLA----------------------E--ATPSPIYNF-------------------------- 495 (861)
T ss_dssp ---------HHHHHHHHHHS----------------------S--SSSCGGGGG--------------------------
T ss_pred ---------HHHHHHHHhcc----------------------c--ccchhhHHH--------------------------
Confidence 00000000000 0 000000000
Q ss_pred CcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC---------
Q 001255 867 PSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--------- 937 (1113)
Q Consensus 867 ~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~--------- 937 (1113)
..+.++.++..+.+.+. .+..|..+++.|..++...+.. ..+++..++..++..+.+.
T Consensus 496 -----------~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 496 -----------YPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp -----------HHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred -----------HHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 00124555555653221 1578999999999988776643 3457788887777776532
Q ss_pred ------CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHhhcCh------hhHHH
Q 001255 938 ------DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYDP------FRCLS 1004 (1113)
Q Consensus 938 ------n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~-~Vr~aa~~~l~~l~~~~~p------~~~l~ 1004 (1113)
...++..++.+|..++..++..+.+|+..+++.+++.+.+... .|++.+..++..++..++. ..+++
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~ 642 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3457889999999999999998999999999999999988766 8999999999988877653 34777
Q ss_pred HhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhhhhhHhhh
Q 001255 1005 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS--ADVRKTVVFCLVDIYIMLGKAFLPYL 1082 (1113)
Q Consensus 1005 ~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~--seVRkaAv~clv~i~~~lGe~i~p~l 1082 (1113)
.|...+...++..+..++++++.+++..+ +.+.+.++.++|.+.+++.|.+ .+||..+..|+..+..++|+++.||+
T Consensus 643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 721 (861)
T 2bpt_A 643 YLLKALNQVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL 721 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 77777777788888999999999998877 4666788999999999999875 89999999999999999999999988
Q ss_pred hcCC
Q 001255 1083 ERLN 1086 (1113)
Q Consensus 1083 ~~L~ 1086 (1113)
+.+-
T Consensus 722 ~~~l 725 (861)
T 2bpt_A 722 NDIM 725 (861)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=7.2e-19 Score=191.42 Aligned_cols=208 Identities=15% Similarity=0.264 Sum_probs=178.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhCcchHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYMERI 572 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~l 572 (1113)
.+.|++|++|++|+..|..+++..+.... .++.+++..|.+.|. |+|.+|...++++|+.|+..+++.|.+|+..+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~---~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKLEN---GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSBCC---CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHccCCCCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35699999999999999999998443222 467789999999995 99999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHH
Q 001255 573 LPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK 652 (1113)
Q Consensus 573 l~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~ 652 (1113)
+|.|+++++|.+..||+++..+|..+.+.++.+.+++.|...+. ++||++|.+++.|+...+..+ +++.+ ....+.
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~--~~~~~-~~~~l~ 175 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-NKNPSVKSETALFIARALTRT--QPTAL-NKKLLK 175 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTC--CGGGC-CHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHc--CCCCc-cHHHHH
Confidence 99999999999999999999999999999999999999988775 579999999999999877643 11111 124567
Q ss_pred HHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHH
Q 001255 653 LWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 708 (1113)
Q Consensus 653 ~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al 708 (1113)
..++.+..++.|++++||++|..+|+.|+.++|...+..++.+|.+..++.+...+
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~ 231 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHH
Confidence 78888999999999999999999999999999887788888888777766664333
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=2.8e-16 Score=191.95 Aligned_cols=556 Identities=13% Similarity=0.125 Sum_probs=374.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhC----CCcccHH
Q 001255 28 PLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC----KAVRVLP 103 (1113)
Q Consensus 28 ~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~----~~~r~l~ 103 (1113)
.|...+.+-...+=..|+..+..++..++.. ...+.++|.|...+ +...-+...+..++..+..+. ....+++
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~--~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHH--HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4555666777777788999999999888763 44567888887776 445566777888999888764 3468888
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHH
Q 001255 104 RIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLF 183 (1113)
Q Consensus 104 ~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll 183 (1113)
.+...+ .+.++.+|..+++.|..+...++.. . ....+.+.+.+...+.++.+|..|-.++..+..++++.. .
T Consensus 91 ~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~-~---~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~---~ 162 (588)
T 1b3u_A 91 PLESLA-TVEETVVRDKAVESLRAISHEHSPS-D---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---K 162 (588)
T ss_dssp HHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHH-H---HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---H
T ss_pred HHHHHH-hCchHHHHHHHHHHHHHHHHHCCHH-H---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH---H
Confidence 888655 6889999999999999999988753 2 334567778888889999999999999999999998542 1
Q ss_pred hcCCHHHHHHHhhccCCCccccCCCccccccCccccccccccccCCCCCCccchhccccccccCCCCCccchhhHHHHhh
Q 001255 184 SSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKS 263 (1113)
Q Consensus 184 ~~Ld~~~~k~l~~~~~~~~~~~~~~s~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1113)
..+-+...+.+++. .+. .|
T Consensus 163 ~~l~~~l~~l~~d~---------~~~--VR-------------------------------------------------- 181 (588)
T 1b3u_A 163 AELRQYFRNLCSDD---------TPM--VR-------------------------------------------------- 181 (588)
T ss_dssp HHHHHHHHHHHTCS---------CHH--HH--------------------------------------------------
T ss_pred HHHHHHHHHHhCCC---------CHH--HH--------------------------------------------------
Confidence 22222222222210 000 00
Q ss_pred hhhhcchhhhHHhhhhhccchhHHHhhhccccccCCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCCCccccccccc
Q 001255 264 LNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTT 343 (1113)
Q Consensus 264 ~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~p~s~~~~~~~~~~~s~~~~~s~~~~s~~ 343 (1113)
. .+...+ .... . .
T Consensus 182 -------~------------~a~~~l-~~l~----------~-------~------------------------------ 194 (588)
T 1b3u_A 182 -------R------------AAASKL-GEFA----------K-------V------------------------------ 194 (588)
T ss_dssp -------H------------HHHHHH-HHHH----------H-------T------------------------------
T ss_pred -------H------------HHHHHH-HHHH----------H-------H------------------------------
Confidence 0 000000 0000 0 0
Q ss_pred cCCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCccccCcCCCcccccCccccccccchhhhhhhhhhhcCCCccccc
Q 001255 344 SGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQ 423 (1113)
Q Consensus 344 ~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (1113)
.|. +..
T Consensus 195 ---------~~~---------------------------------------------------------~~~-------- 200 (588)
T 1b3u_A 195 ---------LEL---------------------------------------------------------DNV-------- 200 (588)
T ss_dssp ---------SCH---------------------------------------------------------HHH--------
T ss_pred ---------hcH---------------------------------------------------------HhH--------
Confidence 000 000
Q ss_pred ccccccCCCCCcCCCCCCCCccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCHHHHHhcCCCCCCChhHH
Q 001255 424 YLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCAR 503 (1113)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~s~nWkeR 503 (1113)
. ..+-..|.+ ++.+.+|..|
T Consensus 201 ----------------------------------------------------~-------~~l~~~l~~-~~~d~~~~vr 220 (588)
T 1b3u_A 201 ----------------------------------------------------K-------SEIIPMFSN-LASDEQDSVR 220 (588)
T ss_dssp ----------------------------------------------------H-------HTHHHHHHH-HHTCSCHHHH
T ss_pred ----------------------------------------------------H-------HHHHHHHHH-HhcCCcHHHH
Confidence 0 001122222 4568899999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhcCC
Q 001255 504 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDP 583 (1113)
Q Consensus 504 ~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klgD~ 583 (1113)
..|++.|..+.+..... .....+...+...+.|.+++|=..++++|+.++...++. .+...++|.++.-+.|.
T Consensus 221 ~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQE-----DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp TTHHHHHHHHHHHSCHH-----HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCC
Confidence 99999999988765421 123557778888889999999999999999999887643 45677899999999999
Q ss_pred chhhHHHHHHHHHHHHhhCCcc--------chHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHH
Q 001255 584 KELVRQPCSTTLDIVSKTYSVD--------SLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWL 655 (1113)
Q Consensus 584 K~~vr~~a~~~L~~i~e~~~~~--------~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l 655 (1113)
...||..+..+|..+.+.++.+ .+++.+...+. ..+++||..++.++......+ +........+
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~~-------~~~~~~~~l~ 365 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPIL-------GKDNTIEHLL 365 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHHH-------CHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHh-------hHhHHHHHHH
Confidence 9999999999999999988765 23334433332 356777777666654322111 0001112234
Q ss_pred HhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCC
Q 001255 656 AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSS 735 (1113)
Q Consensus 656 ~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~ 735 (1113)
+.+..++.|.+++||.+|...|..+...++... .. +.
T Consensus 366 p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--------------~~----~~------------------------- 402 (588)
T 1b3u_A 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--------------LS----QS------------------------- 402 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--------------HH----HH-------------------------
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--------------HH----HH-------------------------
Confidence 444555667777777777766666543221100 00 00
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCc
Q 001255 736 YDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 815 (1113)
Q Consensus 736 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~ 815 (1113)
T Consensus 403 -------------------------------------------------------------------------------- 402 (588)
T 1b3u_A 403 -------------------------------------------------------------------------------- 402 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCC
Q 001255 816 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 895 (1113)
Q Consensus 816 ~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~ 895 (1113)
.++.++..+.+.+
T Consensus 403 -----------------------------------------------------------------~lp~l~~~~~d~~-- 415 (588)
T 1b3u_A 403 -----------------------------------------------------------------LLPAIVELAEDAK-- 415 (588)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTCSS--
T ss_pred -----------------------------------------------------------------HHHHHHHHhcCCC--
Confidence 0122222222222
Q ss_pred ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 001255 896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~ 975 (1113)
|..|..+++.|..+...-+...+ ...++..++.+|.|.+..||+.|+..|..++...+..+ +...++|.|++..
T Consensus 416 -~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~ 489 (588)
T 1b3u_A 416 -WRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMS 489 (588)
T ss_dssp -HHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTT
T ss_pred -chHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHh
Confidence 67788888777776654332221 23567788888999999999999999999999877643 4677888888888
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 1051 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~ 1051 (1113)
.|....||..+..|+..++..+++. .+++.+...+.+.+...+..+++.|+.+.+.++.+.+. +.++|.+.+.
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~~~p~l~~l 566 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKL 566 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH---HHHHHHHHHH
Confidence 8988999999999999999887765 45666666666666677888899999999888865542 5677888888
Q ss_pred hcCCCHHHHHHHHHHHHHH
Q 001255 1052 FGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1052 l~D~~seVRkaAv~clv~i 1070 (1113)
+.|.+.+||.+|..++-.+
T Consensus 567 ~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 567 TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp TTCSSHHHHHHHHHHHHHT
T ss_pred cCCCchhHHHHHHHHHHHh
Confidence 9999999999999988643
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=4.1e-16 Score=200.25 Aligned_cols=432 Identities=13% Similarity=0.170 Sum_probs=290.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHh--hCcchHHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPS--CRKPFESYMERIL 573 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~--~~~~~~~~l~~ll 573 (1113)
.+.++..|..+++.|..+.+.... .+.+.+..+++.+...+.|.+..|...+++.+..++.. +++.+.+++..++
T Consensus 225 ~d~~~~vr~~a~~~L~~l~~~~~~---~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~ 301 (852)
T 4fdd_A 225 GDEEPEVRKNVCRALVMLLEVRMD---RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 301 (852)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHH---HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 467788899999999999887654 23367888999999999999999999999999888752 2334578899999
Q ss_pred HHHHHHh-----------cC-----------CchhhHHHHHHHHHHHHhhCCccchHHHHHHhhcc---CCCHHHHHHHH
Q 001255 574 PHVFSRL-----------ID-----------PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE---QRSPKAKLAVI 628 (1113)
Q Consensus 574 ~~ll~kl-----------gD-----------~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~---~knpkvk~~~L 628 (1113)
|.++.+| +| ..-.+|..+..+|..+.+.++ +.+++.++.++.. ..+|++|.+++
T Consensus 302 p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~ 380 (852)
T 4fdd_A 302 PVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGI 380 (852)
T ss_dssp HHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999998 45 344689999999999999887 5666777766643 36899999999
Q ss_pred HHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHH
Q 001255 629 EFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 708 (1113)
Q Consensus 629 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al 708 (1113)
..+.. +.+. .. +.+ ...+...++.++.++.|+++.||.+|..+|+.+..+.++.... .+...+...
T Consensus 381 ~alg~-i~~~-~~-~~~--~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--------~~~~~ll~~- 446 (852)
T 4fdd_A 381 LVLGA-IAEG-CM-QGM--IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD--------TYLKPLMTE- 446 (852)
T ss_dssp HHHHH-TTTT-TH-HHH--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT--------TTHHHHHHH-
T ss_pred HHHHH-HHhc-ch-HHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH--------HHHHHHHHH-
Confidence 88864 4321 00 000 1235667788888999999999999999999877543221000 000111011
Q ss_pred hhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCC
Q 001255 709 KQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGS 788 (1113)
Q Consensus 709 ~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 788 (1113)
+...++.. .+..+ ....
T Consensus 447 ----------L~~~L~d~-----------------~~~vr------~~a~------------------------------ 463 (852)
T 4fdd_A 447 ----------LLKRILDS-----------------NKRVQ------EAAC------------------------------ 463 (852)
T ss_dssp ----------HHHHHTCS-----------------SHHHH------HHHH------------------------------
T ss_pred ----------HHHHHhCC-----------------CHHHH------HHHH------------------------------
Confidence 11111100 00000 0000
Q ss_pred CCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCc
Q 001255 789 MGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPS 868 (1113)
Q Consensus 789 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1113)
. ...++.- . ..+ +...+
T Consensus 464 ----------~-aL~~l~~---------------------~-~~~--~l~~~---------------------------- 480 (852)
T 4fdd_A 464 ----------S-AFATLEE---------------------E-ACT--ELVPY---------------------------- 480 (852)
T ss_dssp ----------H-HHHHHHH---------------------H-HGG--GGGGG----------------------------
T ss_pred ----------H-HHHHHHH---------------------H-hhH--hhHhH----------------------------
Confidence 0 0000000 0 000 00000
Q ss_pred ccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch-hhHHhHHHHHHHHH---HHhcCCCHHHHHH
Q 001255 869 AIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHS-IWTKYFNQILTAVL---EVLDDADSSVREV 944 (1113)
Q Consensus 869 ~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~-~~~~~f~~ll~~Ll---~~L~D~n~~vr~~ 944 (1113)
..+.+..|+..+.+.. .+....+++.+..++...+.. .-.+++..++..|+ ..+.|.+..++ .
T Consensus 481 ---------l~~ll~~L~~~l~~~~---~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~ 547 (852)
T 4fdd_A 481 ---------LAYILDTLVFAFSKYQ---HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-P 547 (852)
T ss_dssp ---------HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-H
T ss_pred ---------HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-H
Confidence 0012345555554433 234444455555554322211 11346778888777 45567666675 6
Q ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC-----------------ChHHHHHHHHHHHHHHHhhcChh-------
Q 001255 945 ALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD-----------------AVPKVSNEAEHCLTVVLSQYDPF------- 1000 (1113)
Q Consensus 945 aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D-----------------s~~~Vr~aa~~~l~~l~~~~~p~------- 1000 (1113)
++++|..++...|..|.+|+..+++.+++.+.+ ..+.++..+..++..++..++..
T Consensus 548 ~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~ 627 (852)
T 4fdd_A 548 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR 627 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC
Confidence 899999999999999999999988877766432 24568888888888888776532
Q ss_pred -hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhH
Q 001255 1001 -RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL 1079 (1113)
Q Consensus 1001 -~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~ 1079 (1113)
.+++++...+.+.++..+..++.+++.++..++ ..+.++++.++|.+.+.+++.+.+||+.|..++-.+..++|+++.
T Consensus 628 ~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~ 706 (852)
T 4fdd_A 628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ 706 (852)
T ss_dssp CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH
Confidence 578888888877778888899999999997776 677788999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q 001255 1080 PYLERL 1085 (1113)
Q Consensus 1080 p~l~~L 1085 (1113)
||+..+
T Consensus 707 p~~~~i 712 (852)
T 4fdd_A 707 PYIPMV 712 (852)
T ss_dssp GGTHHH
T ss_pred HHHHHH
Confidence 997654
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.78 E-value=4.2e-16 Score=207.87 Aligned_cols=562 Identities=14% Similarity=0.172 Sum_probs=386.4
Q ss_pred HHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCC-----
Q 001255 23 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK----- 97 (1113)
Q Consensus 23 k~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~----- 97 (1113)
+.++..|...+.|....+=..|+.+|+.++..++. .+.+.+++.|++.+.+....+..++..||..|+.+..
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 35666777777888888888899999999877655 6778899999999887777788999999999998864
Q ss_pred -------CcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 001255 98 -------AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRM 170 (1113)
Q Consensus 98 -------~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~ 170 (1113)
.+.++|.++..+.++.++.+|..+++.|..+++.++. .+..+.+.+.+.+..++.|.++.||..|-.|+..
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3589999998883258899999999999999988875 3566888999999999999999999999998887
Q ss_pred HHhhChHHHHHHHhcCCHHHHHHHhhccCCCccccCCCccccccCccccccccccccCCCCCCccchhccccccccCCCC
Q 001255 171 FAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGA 250 (1113)
Q Consensus 171 ~~~~~p~~a~~ll~~Ld~~~~k~l~~~~~~~~~~~~~~s~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1113)
+....++.. + +......++.
T Consensus 202 l~~~~~~~~---~---~~~l~~l~~~------------------------------------------------------ 221 (1230)
T 1u6g_C 202 LVMSCGNIV---F---VDLIEHLLSE------------------------------------------------------ 221 (1230)
T ss_dssp HTTTC-------C---TTHHHHHHHH------------------------------------------------------
T ss_pred HHHhcCHHH---H---HHHHHHHHHH------------------------------------------------------
Confidence 766554321 1 1000000000
Q ss_pred CccchhhHHHHhhhhhhcchhhhHHhhhhhccchhHHHhhhccccccCCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 001255 251 SLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPAS 330 (1113)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~p~s~~~~~~~~~~~s 330 (1113)
T Consensus 222 -------------------------------------------------------------------------------- 221 (1230)
T 1u6g_C 222 -------------------------------------------------------------------------------- 221 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCccccCcCCCcccccCccccccccchhhhhhh
Q 001255 331 NDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMR 410 (1113)
Q Consensus 331 ~~~~~s~~~~s~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~~~ 410 (1113)
T Consensus 222 -------------------------------------------------------------------------------- 221 (1230)
T 1u6g_C 222 -------------------------------------------------------------------------------- 221 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCcccccccccccCCCCCcCCCCCCCCccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCHHHHH
Q 001255 411 EARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDAL 490 (1113)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~l 490 (1113)
|
T Consensus 222 -------------------------------------------------------------------------------L 222 (1230)
T 1u6g_C 222 -------------------------------------------------------------------------------L 222 (1230)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHH
Q 001255 491 SEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME 570 (1113)
Q Consensus 491 ~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~ 570 (1113)
. ...+|..|..+++.|..+.......+ .+.+..+++.+...+.|.+..|-..+++++..++..+++.|.+|+.
T Consensus 223 ~----~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~ 295 (1230)
T 1u6g_C 223 S----KNDSMSTTRTYIQCIAAISRQAGHRI---GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS 295 (1230)
T ss_dssp H----HTCSSCSCTTHHHHHHHHHHHSSGGG---TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH
T ss_pred c----cCCchhHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH
Confidence 0 00000011111111111221111111 1234456677777777888888889999999999999999999999
Q ss_pred HHHHHHHHHhc-C------------------------------------CchhhHHHHHHHHHHHHhhCCc--cc----h
Q 001255 571 RILPHVFSRLI-D------------------------------------PKELVRQPCSTTLDIVSKTYSV--DS----L 607 (1113)
Q Consensus 571 ~ll~~ll~klg-D------------------------------------~K~~vr~~a~~~L~~i~e~~~~--~~----~ 607 (1113)
.++|.+++.+. | ....+|..|..+|..+...++. .. +
T Consensus 296 ~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 99999988773 1 1124688999999999986653 22 2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCC---CC---C----CChhhHHHHHHhHc----cccCCCCHHHHHHH
Q 001255 608 LPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNS---EG---S----GNLGILKLWLAKLT----PLVHDKNTKLKEAA 673 (1113)
Q Consensus 608 l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~---~~---~----~~~~~~~~~l~~l~----~~~~d~n~~VR~aA 673 (1113)
++.+...+. ..++.||.+++..+...+..++... .+ + +....+...++.++ ..+.|.++.+|.++
T Consensus 376 ~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 376 SPALISRFK-EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp HHHHHSTTS-CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHcC-CCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHH
Confidence 333333322 2468899999988876665321100 00 0 00011223333333 34777888888777
Q ss_pred HHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccc
Q 001255 674 ITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVA 753 (1113)
Q Consensus 674 ~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~ 753 (1113)
..+|..+.... +.. + . +.+.
T Consensus 455 ~~~L~~l~~~~-~~~-------l------------~---~~l~------------------------------------- 474 (1230)
T 1u6g_C 455 FNMLTELVNVL-PGA-------L------------T---QHIP------------------------------------- 474 (1230)
T ss_dssp HHHHHHHHHHS-TTT-------T------------G---GGHH-------------------------------------
T ss_pred HHHHHHHHHHc-hhh-------h------------H---HHHH-------------------------------------
Confidence 66666554211 000 0 0 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCC
Q 001255 754 SKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTP 833 (1113)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~P 833 (1113)
T Consensus 475 -------------------------------------------------------------------------------- 474 (1230)
T 1u6g_C 475 -------------------------------------------------------------------------------- 474 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhc
Q 001255 834 RIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVA 913 (1113)
Q Consensus 834 r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~ 913 (1113)
..++.++..|.+.++. ...|.+++..+..++..
T Consensus 475 ----------------------------------------------~ll~~l~~~L~d~~~~-~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 475 ----------------------------------------------VLVPGIIFSLNDKSSS-SNLKIDALSCLYVILCN 507 (1230)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCSSSC-HHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------------------HHHHHHHHHHcCCCCc-chHHHHHHHHHHHHHHh
Confidence 0123344444443321 25677888888888776
Q ss_pred CCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHHHHHHHHh--CCChHHHHH
Q 001255 914 NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-------VMEDSVEIVIEKLLHVT--KDAVPKVSN 984 (1113)
Q Consensus 914 ~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~-------~~~~~~~~~l~~ll~~~--~Ds~~~Vr~ 984 (1113)
.+...+.+++..++..|+..+.|.+..|+..++.+|..+++.++. .+.+|+..++|.++..+ .|....||.
T Consensus 508 ~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~ 587 (1230)
T 1u6g_C 508 HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 587 (1230)
T ss_dssp SCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHH
T ss_pred CCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 665556678899999999999999999999999999999998876 78899999999999999 788889999
Q ss_pred HHHHHHHHHHhhcCh------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHH
Q 001255 985 EAEHCLTVVLSQYDP------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD 1058 (1113)
Q Consensus 985 aa~~~l~~l~~~~~p------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~se 1058 (1113)
.|..|+..++..++. ..+++.|.+.+.+. .++..+++.++.++.......+.+.++.++|.+...+.|.+..
T Consensus 588 ~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 665 (1230)
T 1u6g_C 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRA 665 (1230)
T ss_dssp HHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999988654 35666666666543 3566778888887754433344567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-----hhhHhhhhcC
Q 001255 1059 VRKTVVFCLVDIYIMLG-----KAFLPYLERL 1085 (1113)
Q Consensus 1059 VRkaAv~clv~i~~~lG-----e~i~p~l~~L 1085 (1113)
+|.+|..|+..+....| +.+.+.+..+
T Consensus 666 ~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~l 697 (1230)
T 1u6g_C 666 LKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 697 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 99999999999999987 2455666443
No 13
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.9e-18 Score=190.80 Aligned_cols=215 Identities=13% Similarity=0.186 Sum_probs=176.1
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhH----HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh--
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWT----KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-- 958 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~----~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~-- 958 (1113)
+-..|..++ |++|.+|+++|.+++......... ..|..++..+.+++.|+|..|.+.+|.+|..++..++.
T Consensus 14 l~e~l~sk~---WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKL---WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSS---HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCc---HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 345677777 899999999999999876543221 12666677888999999999999999999999987642
Q ss_pred ----hhhhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhc-ChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 959 ----VMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQY-DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 959 ----~~~~~~~~~l~~ll~~-~~Ds~~~Vr~aa~~~l~~l~~~~-~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
.+..++..++|.|+++ ++|+++.++..+..|+..++..+ +...++..+.+++.+++++.+.+|+.+|..+++.+
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 3566789999999998 79999999999999998888765 45789999999999999999999999999999999
Q ss_pred CHHHH--HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh----HhhhhcCChhhHhhHHHHHHhhhc
Q 001255 1033 SQEEL--MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAF----LPYLERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1033 ~~~~l--~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i----~p~l~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
|...+ ...++.+++.+.++++|++++||++|..|++.+|..+|+.+ ..++.+|.+.+++-|+..+.+...
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~ 246 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGD 246 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCC
Confidence 87553 34578889999999999999999999999999999999743 357899999999999999988743
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.77 E-value=1.7e-14 Score=184.96 Aligned_cols=445 Identities=13% Similarity=0.144 Sum_probs=290.2
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhC-cchHHHHHHHHHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR-KPFESYMERILPH 575 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~-~~~~~~l~~ll~~ 575 (1113)
+.+|+.|..|...|..+...... .-+..++..+...+.|+|++|-..++.+|+.++..++ +.+.+|+..++|.
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56899999999999988876432 2356788888899999999999999999999998876 4578899999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhCCcc--------chHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhc--------
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVSKTYSVD--------SLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA-------- 639 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~e~~~~~--------~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~-------- 639 (1113)
|+..+.|....||..+..+|..+.+.++.. .+++.|+..+.+ +++||..++..+...+..+.
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999886642 355566655544 48999887776665443321
Q ss_pred ---cCCCCCCChhhHHHHHHhHccccCCC---CHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhch
Q 001255 640 ---MNSEGSGNLGILKLWLAKLTPLVHDK---NTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP 713 (1113)
Q Consensus 640 ---~~~~~~~~~~~~~~~l~~l~~~~~d~---n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~ 713 (1113)
.....+. ..+...++.+..++.+. +..+|..+..+|..|....+.. +..++..+ .+.+...+
T Consensus 491 ~~~~~~~~l~--~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l----~~~l~~~l----- 558 (876)
T 1qgr_A 491 QEEPATYCLS--SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKT----TLVIMERL----- 558 (876)
T ss_dssp CCCCCCCSST--TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHH----HHHHHHHH-----
T ss_pred cccccchhhh--HhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHH----HHHHHHHH-----
Confidence 0011122 34556677777776653 5689999999999988765432 22222100 11111111
Q ss_pred hhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 001255 714 RIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAM 793 (1113)
Q Consensus 714 ~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 793 (1113)
...++ .+.. . ....+. ...
T Consensus 559 ------~~~~~--~~~~--------~----~~~~d~------~~~----------------------------------- 577 (876)
T 1qgr_A 559 ------QQVLQ--MESH--------I----QSTSDR------IQF----------------------------------- 577 (876)
T ss_dssp ------HHHHT--TTTS--------C----CSTTHH------HHH-----------------------------------
T ss_pred ------HHHHH--HHhc--------c----CChhhH------HHH-----------------------------------
Confidence 11110 0100 0 000000 000
Q ss_pred CchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccC
Q 001255 794 SDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTN 873 (1113)
Q Consensus 794 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1113)
.+.+......+... . . . .+..++..+
T Consensus 578 -~~~~~~~~~~l~~l--------~-----~-----~--~~~~~~~~~--------------------------------- 603 (876)
T 1qgr_A 578 -NDLQSLLCATLQNV--------L-----R-----K--VQHQDALQI--------------------------------- 603 (876)
T ss_dssp -HHHHHHHHHHHHHH--------H-----T-----T--SCHHHHHTT---------------------------------
T ss_pred -HHHHHHHHHHHHHH--------H-----H-----H--hChhhhhHH---------------------------------
Confidence 00000000000000 0 0 0 000000000
Q ss_pred CcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 001255 874 SLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEM 952 (1113)
Q Consensus 874 ~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L 952 (1113)
....++.++..+.+.+.. +..|.+++..|..++...+. .+.+++..++..|...|.+. +..+|..++.+|..|
T Consensus 604 ----~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 604 ----SDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVEVLGG-EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp ----HHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 001234555555444321 36788899888887765332 23467888999999999887 888999999999999
Q ss_pred HHhchhhhhhHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhccCC----------
Q 001255 953 LKNQKDVMEDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTED---------- 1014 (1113)
Q Consensus 953 ~~~~~~~~~~~~~~~l~~ll~~~~D--s~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~s~~---------- 1014 (1113)
+...+..+.+|+..+++.+++.+.+ ....++..+..|+..++..++.. .+++.+...+..+.
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~ 757 (876)
T 1qgr_A 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDY 757 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 9999989999999999999999976 45789999999999998876654 24444444333221
Q ss_pred -hhHHHHHHHHHHHHHHhhCH---------HHHHhhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhh-hhHhh
Q 001255 1015 -EKTLVTCINCLTKLVGRLSQ---------EELMAQLPSFLPALFEAFGNQ--SADVRKTVVFCLVDIYIMLGK-AFLPY 1081 (1113)
Q Consensus 1015 -~~~~~~al~~L~~lie~~~~---------~~l~~~L~~lip~l~~~l~D~--~seVRkaAv~clv~i~~~lGe-~i~p~ 1081 (1113)
...+..+++.+..+++.++. +.+.++++.+++.+...+.|. +.+||++|..||..+...+|+ .+.+|
T Consensus 758 ~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 758 LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 13455667777777766543 356677888888888777887 789999999999999999998 88887
Q ss_pred h
Q 001255 1082 L 1082 (1113)
Q Consensus 1082 l 1082 (1113)
+
T Consensus 838 ~ 838 (876)
T 1qgr_A 838 E 838 (876)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=1.8e-14 Score=185.00 Aligned_cols=580 Identities=15% Similarity=0.176 Sum_probs=379.8
Q ss_pred HHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHH-----HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCC
Q 001255 23 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEA-----CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK 97 (1113)
Q Consensus 23 k~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~-----~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~ 97 (1113)
.++...|...+.+-...+...|+.++..++...+..|+. ....++|.|++.+.+...-+..++..|+..++....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 345556666677777778888899999999998887765 267899999999998888888888888887775432
Q ss_pred ------CcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 001255 98 ------AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMF 171 (1113)
Q Consensus 98 ------~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~ 171 (1113)
.+.+++.++..+ ++.++.+|..+++.|..+.+..+. .+..+.+.+.+.+.+++.|.+++||..|-+++..+
T Consensus 207 ~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 246778888766 689999999999999999988753 56778888999999999999999999987776655
Q ss_pred HhhChHHHHHHHhcCCHHHHHHHhhccCCCccccCCCccccccCccccccccccccCCCCCCccchhccccccccCCCCC
Q 001255 172 AKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGAS 251 (1113)
Q Consensus 172 ~~~~p~~a~~ll~~Ld~~~~k~l~~~~~~~~~~~~~~s~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1113)
.+.- ..++.+.. -
T Consensus 284 ~~~~-------------~~~~~~~~------------~------------------------------------------ 296 (852)
T 4fdd_A 284 AEQP-------------ICKDVLVR------------H------------------------------------------ 296 (852)
T ss_dssp TTST-------------THHHHHTT------------T------------------------------------------
T ss_pred hcch-------------hHHHHHHH------------H------------------------------------------
Confidence 4321 00000100 0
Q ss_pred ccchhhHHHHhhhhhhcchhhhHHhhhhhccchhHHHhhhccccccCCCCCCccccccCCCCCCCCCCCCCCCCccCCCC
Q 001255 252 LSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASN 331 (1113)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~p~s~~~~~~~~~~~s~ 331 (1113)
+ ..+.. .+... . .
T Consensus 297 ------~-----------~~l~p-------------~ll~~------l-----~-------------------------- 309 (852)
T 4fdd_A 297 ------L-----------PKLIP-------------VLVNG------M-----K-------------------------- 309 (852)
T ss_dssp ------H-----------HHHHH-------------HHHHH------T-----S--------------------------
T ss_pred ------H-----------HHHHH-------------HHHHH------c-----C--------------------------
Confidence 0 00000 00000 0 0
Q ss_pred CCCccccccccccCCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCccccCcCCCcccccCccccccccchhhhhhhh
Q 001255 332 DDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMRE 411 (1113)
Q Consensus 332 ~~~~s~~~~s~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~~~~ 411 (1113)
.+ +. +
T Consensus 310 ---------------------------------------~~--------------------------------e~-d--- 314 (852)
T 4fdd_A 310 ---------------------------------------YS--------------------------------DI-D--- 314 (852)
T ss_dssp ---------------------------------------CC--------------------------------HH-H---
T ss_pred ---------------------------------------Cc--------------------------------Hh-H---
Confidence 00 00 0
Q ss_pred hhhcCCCcccccccccccCCCCCcCCCCCCCCccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCHHHHHh
Q 001255 412 ARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALS 491 (1113)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~l~ 491 (1113)
.+-... +. . + |+ .|
T Consensus 315 ~~~~~~------------------d~---------------------~---e---d~------------------~~--- 328 (852)
T 4fdd_A 315 IILLKG------------------DV---------------------E---G---GS------------------GG--- 328 (852)
T ss_dssp HHHHHC--------------------------------------------------------------------------
T ss_pred HHHhcC------------------Cc---------------------c---c---cc------------------cc---
Confidence 000000 00 0 0 00 00
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHH
Q 001255 492 EGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMER 571 (1113)
Q Consensus 492 ~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ 571 (1113)
+ -...+|..|+.|...|..+...... .-+..++..|...+.|+++++-..++.+|+.++..+++.+.+++..
T Consensus 329 d--d~~~~~~vr~~a~~~L~~la~~~~~------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 329 D--DTISDWNLRKCSAAALDVLANVYRD------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred c--cccccchHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0 0126899999999999988876432 2356788888999999999999999999999999888778899999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCc-------cchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 001255 572 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV-------DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 644 (1113)
Q Consensus 572 ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~-------~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~ 644 (1113)
++|.|+..+.|....||..+..+|..+.+.++. +.+++.|...+.+ .+++||..++..+........ . .
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~--~-~ 476 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC--T-E 476 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHG--G-G
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhh--H-h
Confidence 999999999999999999999999988875432 2345555554433 589999999888865443221 0 0
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 001255 645 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 724 (1113)
Q Consensus 645 ~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~ 724 (1113)
+ ...+...+..+..++.+.+......+..++..|....+.. + ..+++.+.+
T Consensus 477 l--~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~-~------~~~~~~~~l-------------------- 527 (852)
T 4fdd_A 477 L--VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH-L------NKPEYIQML-------------------- 527 (852)
T ss_dssp G--GGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG-G------CCHHHHHHH--------------------
T ss_pred h--HhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh-h------ccHHHHHHH--------------------
Confidence 1 1223444444445554444444334444444443222110 0 000111111
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhc
Q 001255 725 SKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 804 (1113)
Q Consensus 725 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~ 804 (1113)
T Consensus 528 -------------------------------------------------------------------------------- 527 (852)
T 4fdd_A 528 -------------------------------------------------------------------------------- 527 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHH
Q 001255 805 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 884 (1113)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ 884 (1113)
++.
T Consensus 528 -----------------------------------------------------------------------------~p~ 530 (852)
T 4fdd_A 528 -----------------------------------------------------------------------------MPP 530 (852)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred HHH---HhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHH----HHHHHh-------------cCCCHHHHHH
Q 001255 885 ILH---LMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILT----AVLEVL-------------DDADSSVREV 944 (1113)
Q Consensus 885 lL~---~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~----~Ll~~L-------------~D~n~~vr~~ 944 (1113)
+++ .+.+.. .+.| .+++.+..+...-+. .+.+++..++. .+...+ ...+..++..
T Consensus 531 l~~~~~~l~d~~---~~~~-~~~~~l~~i~~~~g~-~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ 605 (852)
T 4fdd_A 531 LIQKWNMLKDED---KDLF-PLLECLSSVATALQS-GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIV 605 (852)
T ss_dssp HHHHHHHSCTTC---TTHH-HHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHH
T ss_pred HHHHHHhccccc---HHHH-HHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHH
Confidence 111 111100 0111 233333333222111 11122333222 222221 1225668889
Q ss_pred HHHHHHHHHHhchhhhhhHH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh------hhHHHHhhhhhccCChh
Q 001255 945 ALSLINEMLKNQKDVMEDSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP------FRCLSVIVPLLVTEDEK 1016 (1113)
Q Consensus 945 aL~~L~~L~~~~~~~~~~~~--~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p------~~~l~~l~~~l~s~~~~ 1016 (1113)
++.+|..|++.+|..|.+|+ ..+++.+++++.|....||+.+..++..++..++. ..+++++...+...++.
T Consensus 606 ~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~ 685 (852)
T 4fdd_A 606 ALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS 685 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHH
T ss_pred HHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchH
Confidence 99999999999999999997 68999999999999999999999999999988764 24666666667666777
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhhhhHhhhhc
Q 001255 1017 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ--SADVRKTVVFCLVDIYIMLGKAFLPYLER 1084 (1113)
Q Consensus 1017 ~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~--~seVRkaAv~clv~i~~~lGe~i~p~l~~ 1084 (1113)
.+..|+..++.++...+. .+.+.+..+++.+++.+.++ ...|+.+|..|+..+....++.+.||++.
T Consensus 686 v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~ 754 (852)
T 4fdd_A 686 VCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 754 (852)
T ss_dssp HHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHH
Confidence 788889999999988874 57788899999999999876 45899999999999998877767676654
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=3.7e-15 Score=181.89 Aligned_cols=420 Identities=15% Similarity=0.148 Sum_probs=295.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
++.+.+|..|..|+.-|..+...... .....+...|...+.|.+..|-..+++.|+.++..++. +.+...++
T Consensus 134 l~~~~~~~~R~~a~~~l~~~~~~~~~------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~ 205 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCYPRVSS------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEII 205 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHTTTSCH------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHH
Confidence 34677999999999988887765432 23567888888889999999999999999999988764 35678899
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc----hHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChh
Q 001255 574 PHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS----LLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 649 (1113)
Q Consensus 574 ~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~----~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~ 649 (1113)
|.++..+.|....||..+..+|..+.+.++.+. +++.+...+. ..++++|..+++.+......+ +...
T Consensus 206 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~-------~~~~ 277 (588)
T 1b3u_A 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAV-------GPEI 277 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHH-------CHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHh-------Cccc
Confidence 999998899889999999999999999988754 4455544443 478999999988886544321 0001
Q ss_pred hHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhh
Q 001255 650 ILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKER 729 (1113)
Q Consensus 650 ~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~ 729 (1113)
.....++.+..++.|.+++||.+|...|+.+....++..... .+ ++.+.|. +..+++..
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-------~~-------~~~l~p~----l~~~l~d~--- 336 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN-------VI-------MSQILPC----IKELVSDA--- 336 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH-------HH-------HHTHHHH----HHHHHTCS---
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhh-------HH-------HHHHHHH----HHHHhcCC---
Confidence 123356677778899999999999999999887654420000 00 1111111 11111100
Q ss_pred hccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCC
Q 001255 730 QRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGA 809 (1113)
Q Consensus 730 ~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~ 809 (1113)
.+ . .+..... .. + .+
T Consensus 337 --------------~~--~----vR~~a~~-------~l---------------------~-------------~l---- 351 (588)
T 1b3u_A 337 --------------NQ--H----VKSALAS-------VI---------------------M-------------GL---- 351 (588)
T ss_dssp --------------CH--H----HHHHHHT-------TG---------------------G-------------GG----
T ss_pred --------------CH--H----HHHHHHH-------HH---------------------H-------------HH----
Confidence 00 0 0000000 00 0 00
Q ss_pred CcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHh
Q 001255 810 NADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLM 889 (1113)
Q Consensus 810 ~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l 889 (1113)
.. .+ +.. .. ....++-++..+
T Consensus 352 -------------~~----~~--~~~------------------------~~----------------~~~l~p~l~~~l 372 (588)
T 1b3u_A 352 -------------SP----IL--GKD------------------------NT----------------IEHLLPLFLAQL 372 (588)
T ss_dssp -------------HH----HH--CHH------------------------HH----------------HHHTHHHHHHHH
T ss_pred -------------HH----Hh--hHh------------------------HH----------------HHHHHHHHHHHh
Confidence 00 00 000 00 001244556666
Q ss_pred hcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 001255 890 CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIE 969 (1113)
Q Consensus 890 ~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~ 969 (1113)
.+.+ +..|..++..|..++...+.. .....++..|...+.|.+..+|..++.+|..|+...+..+ +...++|
T Consensus 373 ~d~~---~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~ 444 (588)
T 1b3u_A 373 KDEC---PEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNS 444 (588)
T ss_dssp TCSC---HHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHH
T ss_pred CCCc---hHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHH
Confidence 5543 579999999988887665432 2346778888888999999999999999999999887643 3356788
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHH
Q 001255 970 KLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1045 (1113)
Q Consensus 970 ~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~li 1045 (1113)
.++..+.|....||++|..++..++..+++. .+++.|...+.+.+|..+..++.+++.+.+.++.+. .++.++
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~ 521 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---TTKHML 521 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---HHHHTH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---HHHHHH
Confidence 8889999999999999999999999988875 455666555567789999999999999998877544 467889
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-----hHhhhhcC
Q 001255 1046 PALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-----FLPYLERL 1085 (1113)
Q Consensus 1046 p~l~~~l~D~~seVRkaAv~clv~i~~~lGe~-----i~p~l~~L 1085 (1113)
|.+.+.+.|.+++||.++..|+..++..+|++ +.|.|..|
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l 566 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999888853 44555444
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.72 E-value=3.6e-13 Score=172.55 Aligned_cols=425 Identities=12% Similarity=0.142 Sum_probs=276.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcc--hHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP--FESYMER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~--~~~~l~~ 571 (1113)
.+.+.+|..|..|+..|..+.+.... ..+.+.+..++..+...|.|+|..|-..++.+|+.++..++.. ..+++..
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEP--SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCH--HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence 35688999999999999998865431 1222467788999999999999999999999999999987654 3689999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC------------------c--cchHHHHHHhhccC--CCHHHHHHHHH
Q 001255 572 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS------------------V--DSLLPALLRSLDEQ--RSPKAKLAVIE 629 (1113)
Q Consensus 572 ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~------------------~--~~~l~~l~~~~~~~--knpkvk~~~L~ 629 (1113)
+++.|+..+.|. +.||..+..+|..+.+.++ + +.+++.|...+.+. .+..+|..+++
T Consensus 452 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~ 530 (876)
T 1qgr_A 452 LLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530 (876)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHH
Confidence 999999999886 7799999999999887643 1 24566666665433 24568877787
Q ss_pred HHHHHHhhhccCCCCCCChhhHHHHHHhHcccc-----------CCCC----HHHHHHHHHHHHHHHhhcChhHHHHHHh
Q 001255 630 FAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV-----------HDKN----TKLKEAAITCIISVYTHYDSTAVLNFIL 694 (1113)
Q Consensus 630 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-----------~d~n----~~VR~aA~~~L~~l~~~~~~~~~~~~l~ 694 (1113)
-+...+.. +. .. ....+...++.++..+ .+.. +++|..+..+|..+...++...+..++
T Consensus 531 ~l~~l~~~--~~-~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~- 604 (876)
T 1qgr_A 531 SLMEIVKN--SA-KD--CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS- 604 (876)
T ss_dssp HHHHHHHT--CC-ST--THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-
T ss_pred HHHHHHHH--Cc-hh--hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-
Confidence 77654431 21 11 1122233333333322 1211 678888899988887665412222111
Q ss_pred cCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 001255 695 SLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGR 774 (1113)
Q Consensus 695 ~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1113)
+.+... +...+++.. + .+ . . +..
T Consensus 605 -------~~l~~~-----------l~~~l~~~~------------~---~~---~---v-~~~----------------- 627 (876)
T 1qgr_A 605 -------DVVMAS-----------LLRMFQSTA------------G---SG---G---V-QED----------------- 627 (876)
T ss_dssp -------HHHHHH-----------HHHHC--------------------CC---H---H-HHH-----------------
T ss_pred -------HHHHHH-----------HHHHHHhcc------------C---CC---C---c-cHH-----------------
Confidence 111011 111111100 0 00 0 0 000
Q ss_pred CCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCC
Q 001255 775 KWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNN 854 (1113)
Q Consensus 775 ~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~ 854 (1113)
. -.--....... ...+ ..+
T Consensus 628 ---------a----------~~~l~~l~~~~---------------------~~~~-------~~~-------------- 646 (876)
T 1qgr_A 628 ---------A----------LMAVSTLVEVL---------------------GGEF-------LKY-------------- 646 (876)
T ss_dssp ---------H----------HHHHHHHHHHH---------------------GGGG-------GGG--------------
T ss_pred ---------H----------HHHHHHHHHHH---------------------HhhH-------HHH--------------
Confidence 0 00000000000 0000 000
Q ss_pred CCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHh
Q 001255 855 EIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL 934 (1113)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L 934 (1113)
....++.++..+.+... +..|..|+..|..++...+. .+.+++..++..|+..|
T Consensus 647 -----------------------~~~~~~~l~~~l~~~~~--~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l 700 (876)
T 1qgr_A 647 -----------------------MEAFKPFLGIGLKNYAE--YQVCLAAVGLVGDLCRALQS-NIIPFCDEVMQLLLENL 700 (876)
T ss_dssp -----------------------HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHcCcch--HHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHh
Confidence 00124556666666522 57899999988888765442 34567889999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCCh-----------HHHHHHHHHHHHHHHhhcCh--
Q 001255 935 DD--ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV-----------PKVSNEAEHCLTVVLSQYDP-- 999 (1113)
Q Consensus 935 ~D--~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~-----------~~Vr~aa~~~l~~l~~~~~p-- 999 (1113)
.+ .+..++..++.++..|+...|..|.+|+..++|.++..+.+.. ..+|..+..++..++..++.
T Consensus 701 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~ 780 (876)
T 1qgr_A 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQ 780 (876)
T ss_dssp TCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 76 4567999999999999999999999999999999999887552 37899998888877766432
Q ss_pred -------hh---HHHHhhhhh----ccC--ChhHHHHHHHHHHHHHHhhCHHHHHhh-hhhHHHHHHH-HhcCCCHHHHH
Q 001255 1000 -------FR---CLSVIVPLL----VTE--DEKTLVTCINCLTKLVGRLSQEELMAQ-LPSFLPALFE-AFGNQSADVRK 1061 (1113)
Q Consensus 1000 -------~~---~l~~l~~~l----~s~--~~~~~~~al~~L~~lie~~~~~~l~~~-L~~lip~l~~-~l~D~~seVRk 1061 (1113)
.. .++.+.+.+ .+. +...+..|+.+|+.+++.+|.+.+.+. ...+++.+.. ++.|.+.+||.
T Consensus 781 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~ 860 (876)
T 1qgr_A 781 ENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKT 860 (876)
T ss_dssp SSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHH
Confidence 11 233333333 344 446788899999999999986455555 4677888888 99999999999
Q ss_pred HHHHHHHHHH
Q 001255 1062 TVVFCLVDIY 1071 (1113)
Q Consensus 1062 aAv~clv~i~ 1071 (1113)
+|..++-.+.
T Consensus 861 ~a~~a~~~~~ 870 (876)
T 1qgr_A 861 LARWATKELR 870 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987665
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.65 E-value=1.9e-13 Score=182.24 Aligned_cols=439 Identities=17% Similarity=0.228 Sum_probs=309.6
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+...|. .+.|.|...|..|++.|.+.++........ .....++..|.+.|.|.|.+|-..++.+|..++..+++
T Consensus 8 l~~lL~--~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~--~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 8 ISNLLE--KMTSSDKDFRFMATNDLMTELQKDSIKLDD--DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHH--HTTCSSHHHHHHHHHHHHHHTSSSCCSCCT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHH--hcCCCCHhHHHHHHHHHHHHHcccccCCCh--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--
Confidence 567777 578999999999999999988764322111 23567888888999999999999999999999987653
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCcc------------chHHHHHHhhccCCCHHHHHHHHHHHHH
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD------------SLLPALLRSLDEQRSPKAKLAVIEFAIS 633 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~------------~~l~~l~~~~~~~knpkvk~~~L~~l~~ 633 (1113)
+++..+++.|+..+.|..+.+|.++..+|..+.+.++++ .+++.|+..+.+..++.+|.+++.-+.+
T Consensus 82 -~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 -YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 788999999999999999999999999999999888764 4566666666545789999999999887
Q ss_pred HHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhch
Q 001255 634 SLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP 713 (1113)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~ 713 (1113)
.+..+ +..+. ..+...+..+...+.+.++.||++|..+|+.+....+.. + ++
T Consensus 161 ~~~~~---~~~l~--~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~-~----------------------~~ 212 (1230)
T 1u6g_C 161 MLSRQ---GGLLV--NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI-V----------------------FV 212 (1230)
T ss_dssp HHHHT---CSSCT--TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------------------------CT
T ss_pred HHHHh---HhHHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH-H----------------------HH
Confidence 66532 11222 245678888999999999999999999999987543221 1 11
Q ss_pred hhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 001255 714 RIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAM 793 (1113)
Q Consensus 714 ~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 793 (1113)
.+-..+..++.... + +.. ++..
T Consensus 213 ~~l~~l~~~L~~~~------------~----~~~------r~~a------------------------------------ 234 (1230)
T 1u6g_C 213 DLIEHLLSELSKND------------S----MST------TRTY------------------------------------ 234 (1230)
T ss_dssp THHHHHHHHHHHTC------------S----SCS------CTTH------------------------------------
T ss_pred HHHHHHHHHhccCC------------c----hhH------HHHH------------------------------------
Confidence 10111122332210 0 000 0000
Q ss_pred CchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccC
Q 001255 794 SDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTN 873 (1113)
Q Consensus 794 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1113)
-+.-..+... .|. . | .
T Consensus 235 -~~~l~~l~~~---------------------------~~~-~-------------~------------~---------- 250 (1230)
T 1u6g_C 235 -IQCIAAISRQ---------------------------AGH-R-------------I------------G---------- 250 (1230)
T ss_dssp -HHHHHHHHHH---------------------------SSG-G-------------G------------T----------
T ss_pred -HHHHHHHHHH---------------------------hHH-H-------------H------------H----------
Confidence 0000000000 000 0 0 0
Q ss_pred CcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc------------------
Q 001255 874 SLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD------------------ 935 (1113)
Q Consensus 874 ~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~------------------ 935 (1113)
.-..+.++-+++.+.+.+ ++.|..++..+..++...+.. +.+++..++..++..+.
T Consensus 251 --~~l~~l~~~ll~~l~d~~---~~vR~~a~~~l~~l~~~~~~~-~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 251 --EYLEKIIPLVVKFCNVDD---DELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp --TSCTTHHHHHHHHHSSCC---TTTHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHTTCCCCC----------------
T ss_pred --HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHChHH-HHHhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 001223566777776543 467888888888777654432 23567777777665442
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 936 -------------------DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 936 -------------------D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
|....+|..|+.+|..++...+..|.+|+..++|.++..++|....||.++..++..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 1123579999999999999777678999999999999999999999999999999888876
Q ss_pred cCh-------------------------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHH
Q 001255 997 YDP-------------------------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 1051 (1113)
Q Consensus 997 ~~p-------------------------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~ 1051 (1113)
++. +.+++.+...+.+.+|+.+..|+..++.+++..+ +.+.+++..++|.+...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHH
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHH
Confidence 532 2355555555888899999999999999998754 55667899999999999
Q ss_pred hcCCCH--HHHHHHHHHHHHHHHHhhh-hhHhhhhcCChh
Q 001255 1052 FGNQSA--DVRKTVVFCLVDIYIMLGK-AFLPYLERLNST 1088 (1113)
Q Consensus 1052 l~D~~s--eVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s 1088 (1113)
+.|... +||..+..++..+...+|. .+.||++.+-+.
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 999875 9999999999999888885 588888766443
No 19
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.52 E-value=7.7e-14 Score=176.15 Aligned_cols=213 Identities=8% Similarity=0.167 Sum_probs=173.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--hhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DVM 960 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--~~~ 960 (1113)
.++++.+.... ..+|.+|...|..++.......... ..++..|.+.+.|++.. +.||..+..|++..+ +.+
T Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 17 EELFQKLSVAT---ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHTTCC---TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHhhccccc---hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 55666665543 2578999999999887542111111 25788899999888666 999999999998775 478
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh---HHHHhhhhhcc-CChhHHHHHHHHHHHHHHhhCHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEE 1036 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~---~l~~l~~~l~s-~~~~~~~~al~~L~~lie~~~~~~ 1036 (1113)
++|+-.++|.++++++|+...||++|..++++++..++|+. ++|.|...|.+ .+|+.+++|++++..|++.. ++.
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~ 168 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQ 168 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHH
Confidence 99999999999999999999999999999999999999975 56666666654 58999999999999999877 689
Q ss_pred HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhh--HhhHHHHHHhhhcc
Q 001255 1037 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ--LRLVTIYANRISQA 1103 (1113)
Q Consensus 1037 l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~--~kLl~~yi~R~~~~ 1103 (1113)
+...|++++|.+..||+|+++||.++|..||.++|..+++ |+.|+++.|-..- -.-+.+-|+..+..
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGAT 238 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTC
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999996 9999998773221 12266666665443
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.46 E-value=4.4e-11 Score=141.11 Aligned_cols=396 Identities=14% Similarity=0.120 Sum_probs=265.2
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHhhC
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCR 562 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Ds--n~kV~~~~L~~l~~l~~~~~ 562 (1113)
.+.++|. .+-+.|-..|++|-+.|+++-++ +.......|...+.+. +..|=+.+.-+|..++..+.
T Consensus 2 ~l~~~L~--~~~s~d~~~r~~Ae~~L~~~~~~----------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~ 69 (462)
T 1ibr_B 2 ELITILE--KTVSPDRLELEAAQKFLERAAVE----------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKD 69 (462)
T ss_dssp CHHHHHH--HTTCSCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSS
T ss_pred cHHHHHH--HhcCCCHHHHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccc
Confidence 3567887 46688889999999999985542 1122333344444443 56788888888888774321
Q ss_pred -----------cch-HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCc----cchHHHHHHhhccCC-CHHHHH
Q 001255 563 -----------KPF-ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV----DSLLPALLRSLDEQR-SPKAKL 625 (1113)
Q Consensus 563 -----------~~~-~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~----~~~l~~l~~~~~~~k-npkvk~ 625 (1113)
..+ ......+-..|+..|.+..+.+ ..+..+|..++....+ ..+++.|...+.+.. ++.+|.
T Consensus 70 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 70 PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred hHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHH
Confidence 112 2333445566778888776678 7888888888865322 346777777765543 899999
Q ss_pred HHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCC--CHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHH
Q 001255 626 AVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDK--NTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNS 703 (1113)
Q Consensus 626 ~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~ 703 (1113)
.++..+......+ .+..+ .......+..+..++.|. +++||.+|..++..+..++.. .+. . .+
T Consensus 149 ~al~~l~~l~~~~--~~~~~--~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~~---~---~~ 213 (462)
T 1ibr_B 149 STLEAIGYICQDI--DPEQL--QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NFD---K---ES 213 (462)
T ss_dssp HHHHHHHHHHHHS--CGGGT--GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HHT---S---HH
T ss_pred HHHHHHHHHHHhC--Cchhh--HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hhh---h---hH
Confidence 9999987655432 11111 133455677777888886 899999999988876422100 000 0 00
Q ss_pred HHHHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 001255 704 LRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESN 783 (1113)
Q Consensus 704 l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1113)
. ..++-
T Consensus 214 ~---------------~~~l~----------------------------------------------------------- 219 (462)
T 1ibr_B 214 E---------------RHFIM----------------------------------------------------------- 219 (462)
T ss_dssp H---------------HHHHH-----------------------------------------------------------
T ss_pred H---------------HHHHH-----------------------------------------------------------
Confidence 0 00000
Q ss_pred cccCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccC
Q 001255 784 LMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLN 863 (1113)
Q Consensus 784 ~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1113)
T Consensus 220 -------------------------------------------------------------------------------- 219 (462)
T 1ibr_B 220 -------------------------------------------------------------------------------- 219 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHH-HHHHHHHHHhcCCCHHHH
Q 001255 864 HHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFN-QILTAVLEVLDDADSSVR 942 (1113)
Q Consensus 864 ~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~-~ll~~Ll~~L~D~n~~vr 942 (1113)
..+...+. ..+ ++.|..+++.|..++..... .+.+++. .++..++..+.|.+..||
T Consensus 220 -------------------~~l~~~~~-~~~--~~vr~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 220 -------------------QVVCEATQ-CPD--TRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp -------------------HHHHHHTT-CSS--HHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred -------------------HHHHHhcC-CCC--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 00000000 000 24566666666666554321 2234555 677777788889999999
Q ss_pred HHHHHHHHHHHHhc---------------------hhhhhhHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHH
Q 001255 943 EVALSLINEMLKNQ---------------------KDVMEDSVEIVIEKLLHVTKDA-------VPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 943 ~~aL~~L~~L~~~~---------------------~~~~~~~~~~~l~~ll~~~~Ds-------~~~Vr~aa~~~l~~l~ 994 (1113)
..++.++..++... ...+++|+..++|.+++.+.+. ...+|.+|..++..++
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 99999999998753 1134567788999998888532 3479999999999999
Q ss_pred hhcChhhHHHHh----hhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 995 SQYDPFRCLSVI----VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 995 ~~~~p~~~l~~l----~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
..++ ..+++.+ ...+.+.+|+.+..|+..++.+.+....+.+.++++.++|.+..++.|.++.||.+|..|+..+
T Consensus 357 ~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 357 TCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (462)
T ss_dssp HHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred Hhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9987 4554444 4555678999999999999999976655556678899999999999999999999999999999
Q ss_pred HHHhhhhh--HhhhhcCC
Q 001255 1071 YIMLGKAF--LPYLERLN 1086 (1113)
Q Consensus 1071 ~~~lGe~i--~p~l~~L~ 1086 (1113)
+..+++.+ .+|++.+=
T Consensus 436 ~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 436 CELLPEAAINDVYLAPLL 453 (462)
T ss_dssp HHHGGGGCCSTTTHHHHH
T ss_pred HHhcccccccHHHHHHHH
Confidence 99998754 35665543
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.19 E-value=1.7e-08 Score=118.69 Aligned_cols=388 Identities=14% Similarity=0.155 Sum_probs=254.2
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhc-CCCchhHHHHhHH--HHHHHHHHhhcCc-chHHHHHHHHHHHHHHHhh
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQ-GPKGIQEVIQNFE--KVMKLFFQHLDDP-HHKVAQAALSTLADIIPSC 561 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~-~~~~~~~v~~~l~--~l~~~l~~~l~Ds-n~kV~~~~L~~l~~l~~~~ 561 (1113)
+...+. .+.+.+...|..|+..|.+++.. .+.... ..+. .++..|...|.+. +..|...++.+|..++...
T Consensus 22 l~~l~~--~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~---~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIE--MIFSKSPEQQLSATQKFRKLLSKEPNPPID---EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHH--HHHSSCHHHHHHHHHHHHHHHHSSSSCCHH---HHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHH--HhcCCCHHHHHHHHHHHHHHhcCCCCCcHH---HHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345555 45688999999999999999863 232222 1222 4677888888887 8999999999999888643
Q ss_pred CcchHHHH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCc-------cchHHHHHHhhccCCCHHHHHHHHHHHHH
Q 001255 562 RKPFESYM-ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV-------DSLLPALLRSLDEQRSPKAKLAVIEFAIS 633 (1113)
Q Consensus 562 ~~~~~~~l-~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~-------~~~l~~l~~~~~~~knpkvk~~~L~~l~~ 633 (1113)
.+..+.++ ..++|.|++.|.+..+.+|..|..+|..+....+. .-.++.|.+++.+..++.++..++..+.+
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 22222222 35899999999887888999999999988864321 23577788777655789999988877664
Q ss_pred HHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhch
Q 001255 634 SLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP 713 (1113)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~ 713 (1113)
+... .++.. ........++.++.++.+.+++||..|..+|..|..+. + +....+
T Consensus 177 -l~~~-~~~~~--~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~------------~~~~~~--------- 230 (450)
T 2jdq_A 177 -LCRG-KSPPP--EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP-N------------DKIQAV--------- 230 (450)
T ss_dssp -HHCC-SSSCC--CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS-H------------HHHHHH---------
T ss_pred -HhCC-CCCCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC-c------------HHHHHH---------
Confidence 4321 10111 11122446677777888888899888887777664321 0 000000
Q ss_pred hhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 001255 714 RIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAM 793 (1113)
Q Consensus 714 ~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 793 (1113)
.+.
T Consensus 231 ---------~~~-------------------------------------------------------------------- 233 (450)
T 2jdq_A 231 ---------IDA-------------------------------------------------------------------- 233 (450)
T ss_dssp ---------HHT--------------------------------------------------------------------
T ss_pred ---------HHc--------------------------------------------------------------------
Confidence 000
Q ss_pred CchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccC
Q 001255 794 SDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTN 873 (1113)
Q Consensus 794 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1113)
T Consensus 234 -------------------------------------------------------------------------------- 233 (450)
T 2jdq_A 234 -------------------------------------------------------------------------------- 233 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 874 SLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEM 952 (1113)
Q Consensus 874 ~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L 952 (1113)
..++.++..|.+.+ |+.|..|+..|..+........ ...+ ..++..|...|.+.+..+|..|+.+|..|
T Consensus 234 ------~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 234 ------GVCRRLVELLMHND---YKVVSPALRAVGNIVTGDDIQT-QVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp ------TTHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHCCCc---hhHHHHHHHHHHHHhhCChHHH-HHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 00222333333222 4566666666665544322110 0001 13577788889898999999999999999
Q ss_pred HHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhccCChhHHHHHHH
Q 001255 953 LKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCIN 1023 (1113)
Q Consensus 953 ~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s~~~~~~~~al~ 1023 (1113)
+..........+ ..+++.|++.+.|....|+..|..++..++....+. .+++.|...+.+.++..+..|+.
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 864333333333 368888999898888999999999999988764443 36778888888888888888999
Q ss_pred HHHHHHHhhCHHH------HHhhhhhH-----HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1024 CLTKLVGRLSQEE------LMAQLPSF-----LPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1024 ~L~~lie~~~~~~------l~~~L~~l-----ip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.|..+++..+... +.+....+ ++.|..-..|.+.+||+.|+.++-.+|
T Consensus 384 aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9988886543221 01112222 466777778889999999999777665
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.14 E-value=4.8e-08 Score=117.98 Aligned_cols=402 Identities=16% Similarity=0.185 Sum_probs=254.1
Q ss_pred CCHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCC-CchhHHHHhHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHHhh
Q 001255 484 ASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGP-KGIQEVIQNFEKVMKLFFQHLDDPH-HKVAQAALSTLADIIPSC 561 (1113)
Q Consensus 484 ~~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~-~~~~~v~~~l~~l~~~l~~~l~Dsn-~kV~~~~L~~l~~l~~~~ 561 (1113)
..+..++. .+.+.||..|.+|+..|.+++.... .....+.. ..++..|...|.+.+ ..|...++.+|..++...
T Consensus 74 ~~l~~lv~--~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIG--GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ--SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHH--HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH--TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHH--HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34677777 5688899999999999999987654 22221111 135777888888876 889899999999988743
Q ss_pred CcchHHHHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCc-------cchHHHHHHhhccCCCHHHHHHHHHHHH
Q 001255 562 RKPFESYME--RILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV-------DSLLPALLRSLDEQRSPKAKLAVIEFAI 632 (1113)
Q Consensus 562 ~~~~~~~l~--~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~-------~~~l~~l~~~~~~~knpkvk~~~L~~l~ 632 (1113)
. .....+. ..+|.|+.-|.+....+|..|..+|..+....+. .-.++.|+..+....++.++..++..|.
T Consensus 150 ~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 150 S-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2 2322222 4899999999888888999999999988753221 1246777777755678888887766554
Q ss_pred HHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhc
Q 001255 633 SSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYT 712 (1113)
Q Consensus 633 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~ 712 (1113)
+ +... .+. .........++.++.++.+.+++|+..|..+|..|-.. .. .....+ +.
T Consensus 229 ~-L~~~--~~~--~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~-----------~~~~~~---~~--- 284 (528)
T 4b8j_A 229 N-FCRG--KPQ--PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TN-----------DKIQAV---IE--- 284 (528)
T ss_dssp H-HHCS--SSC--CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CH-----------HHHHHH---HH---
T ss_pred H-HHcC--CCC--CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CH-----------HHHHHH---HH---
Confidence 3 4321 111 11122344677777888888899998888877776421 10 000000 00
Q ss_pred hhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCC
Q 001255 713 PRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHA 792 (1113)
Q Consensus 713 ~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 792 (1113)
.
T Consensus 285 ------------~------------------------------------------------------------------- 285 (528)
T 4b8j_A 285 ------------A------------------------------------------------------------------- 285 (528)
T ss_dssp ------------T-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCccccc
Q 001255 793 MSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKT 872 (1113)
Q Consensus 793 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1113)
T Consensus 286 -------------------------------------------------------------------------------- 285 (528)
T 4b8j_A 286 -------------------------------------------------------------------------------- 285 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 001255 873 NSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLIN 950 (1113)
Q Consensus 873 ~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~-n~~vr~~aL~~L~ 950 (1113)
..++.|+..|.+.+ +..+..|+..|..+........ ...+ ..++..|...|.+. +..++..|+.+|.
T Consensus 286 -------g~v~~Lv~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 286 -------GVCPRLVELLLHPS---PSVLIPALRTVGNIVTGDDAQT-QCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp -------TCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHcCCC---hhHHHHHHHHHHHHHcCCHHHH-HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 00222233333222 3455566666555543221100 0000 23466677788787 8899999999999
Q ss_pred HHHHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhccCChhHHHHH
Q 001255 951 EMLKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 951 ~L~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s~~~~~~~~a 1021 (1113)
.|+..........+ ..++|.|++.+.+....|+..|..++..++....+. .+++.|...+.+.+......|
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 434 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 434 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 99874333333322 257888888888778899999999999988774443 367788888888888888888
Q ss_pred HHHHHHHHHhhCHH---------HHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhHhhhhc
Q 001255 1022 INCLTKLVGRLSQE---------ELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLER 1084 (1113)
Q Consensus 1022 l~~L~~lie~~~~~---------~l~~~L--~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG-e~i~p~l~~ 1084 (1113)
+..|..++...... .....+ ...+..+....+|.+.+|++.|..++-.+|..-. +++.+++..
T Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~ 509 (528)
T 4b8j_A 435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVA 509 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccccCCC
Confidence 99998888544321 111111 1235667788899999999999999887776543 356665543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.10 E-value=3.8e-08 Score=119.01 Aligned_cols=390 Identities=14% Similarity=0.140 Sum_probs=255.7
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcC-CCchhHHHHhHHHHHHHHHHhhcCc-chHHHHHHHHHHHHHHHhhC
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLDDP-HHKVAQAALSTLADIIPSCR 562 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~-~~~~~~v~~~l~~l~~~l~~~l~Ds-n~kV~~~~L~~l~~l~~~~~ 562 (1113)
.+..++. .+.+.||..|..|+..|.+++... ...+..+. + ..++..|...|.+. +..|...++.+|..++....
T Consensus 88 ~i~~lv~--~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~-~-~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 88 ELPQMTQ--QLNSDDMQEQLSATVKFRQILSREHRPPIDVVI-Q-AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CHHHHHH--HHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-H-TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHH-H-CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3566776 567889999999999999998754 22222111 0 13677888899887 88999999999998886431
Q ss_pred cchHHHH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC-------ccchHHHHHHhhccCCCHHHHHHHHHHHHH
Q 001255 563 KPFESYM--ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS-------VDSLLPALLRSLDEQRSPKAKLAVIEFAIS 633 (1113)
Q Consensus 563 ~~~~~~l--~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~-------~~~~l~~l~~~~~~~knpkvk~~~L~~l~~ 633 (1113)
....++ ..++|.|+..|.+....+|..|..+|..+....+ ..-.++.|...+.+ .++.++..++.-|.+
T Consensus 164 -~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 164 -AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 233333 3578999999987777899999999998875321 12356777777764 678888877665543
Q ss_pred HHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhch
Q 001255 634 SLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP 713 (1113)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~ 713 (1113)
|... .++. .........++.++.++.+.+++||..|..+|..|-... + .....+
T Consensus 242 -L~~~-~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~------------~~~~~~--------- 295 (530)
T 1wa5_B 242 -LCRG-KKPQ--PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-Q------------EAIQAV--------- 295 (530)
T ss_dssp -HHCC-SSSC--CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-H------------HHHHHH---------
T ss_pred -HhCC-CCCC--CcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-H------------HHHHHH---------
Confidence 4321 1011 111223345677777888888999999888888775321 0 000000
Q ss_pred hhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 001255 714 RIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAM 793 (1113)
Q Consensus 714 ~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 793 (1113)
++.
T Consensus 296 ---------~~~-------------------------------------------------------------------- 298 (530)
T 1wa5_B 296 ---------IDV-------------------------------------------------------------------- 298 (530)
T ss_dssp ---------HHT--------------------------------------------------------------------
T ss_pred ---------Hhc--------------------------------------------------------------------
Confidence 000
Q ss_pred CchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccC
Q 001255 794 SDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTN 873 (1113)
Q Consensus 794 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1113)
T Consensus 299 -------------------------------------------------------------------------------- 298 (530)
T 1wa5_B 299 -------------------------------------------------------------------------------- 298 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 874 SLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEM 952 (1113)
Q Consensus 874 ~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L 952 (1113)
..++.|+..|.+.+ |..|..|+..|..+........ ...+ ..++..|...|.+.+..++..|+.+|..|
T Consensus 299 ------~~v~~Lv~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 299 ------RIPKRLVELLSHES---TLVQTPALRAVGNIVTGNDLQT-QVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp ------TCHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHCCCC---hhhHHHHHHHHHHHHcCCHHHH-HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 00222333333222 4566666666665553321110 0001 14577788899999999999999999999
Q ss_pred HHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--h--------hHHHHhhhhhccCChhHHHHH
Q 001255 953 LKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--F--------RCLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 953 ~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--~--------~~l~~l~~~l~s~~~~~~~~a 1021 (1113)
+......+..++ ..+++.|++.+.+....|+..|..++..++....+ . .+++.|...+.+.+...+..|
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 864333333333 35788888888888899999999999999876544 2 267888888888888888888
Q ss_pred HHHHHHHHHhhCHH---------HHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1022 INCLTKLVGRLSQE---------ELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1022 l~~L~~lie~~~~~---------~l~~~L--~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
+..|..+++..... .....+ ...++.|.....|.+.+|++.|..++..+|..
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 98888888654321 111112 22467778888999999999999988766644
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.06 E-value=4.3e-08 Score=115.41 Aligned_cols=365 Identities=13% Similarity=0.172 Sum_probs=234.4
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCC-----------chhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPK-----------GIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA 555 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~-----------~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~ 555 (1113)
.++|. ..+.++..|.-|...|++++..... .+.. .....+.+.|...+.+.+.+| ..+.++++
T Consensus 41 ~~il~---~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~--~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~ 114 (462)
T 1ibr_B 41 SRVLA---NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA--NARREVKNYVLQTLGTETYRP-SSASQCVA 114 (462)
T ss_dssp HHHHH---CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHTTCCCSSS-CSHHHHHH
T ss_pred HHHHH---cCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCH--HHHHHHHHHHHHHhCCCCchh-hHHHHHHH
Confidence 45555 1345789999999999999865310 0111 123345666777888888889 88999999
Q ss_pred HHHHhhCcchHHHHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhhCCc-------cchHHHHHHhhccCC-CHHHHH
Q 001255 556 DIIPSCRKPFESYMERILPHVFSRLIDP--KELVRQPCSTTLDIVSKTYSV-------DSLLPALLRSLDEQR-SPKAKL 625 (1113)
Q Consensus 556 ~l~~~~~~~~~~~l~~ll~~ll~klgD~--K~~vr~~a~~~L~~i~e~~~~-------~~~l~~l~~~~~~~k-npkvk~ 625 (1113)
.++....+. ..| ..++|.|++.+.+. ...+|..+..+|..+.+.+.+ +.+++.+...+.+.. ++.||.
T Consensus 115 ~ia~~~~~~-~~w-~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~ 192 (462)
T 1ibr_B 115 GIACAEIPV-NQW-PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKL 192 (462)
T ss_dssp HHHHHHGGG-TCC-TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HHHHHhccc-ccc-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 998875321 234 77999999999876 678999999999999987643 235666666665543 899999
Q ss_pred HHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHH
Q 001255 626 AVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 705 (1113)
Q Consensus 626 ~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~ 705 (1113)
+++.-+...+. + +. ..+.........+..+...+.+.+.+||.++..+|..+...+... +..++ +.
T Consensus 193 ~a~~~l~~~~~-~-~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~---~~------- 258 (462)
T 1ibr_B 193 AATNALLNSLE-F-TK-ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYM---GP------- 258 (462)
T ss_dssp HHHHHHHHHTT-T-TH-HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG-CTTTT---TT-------
T ss_pred HHHHHHHHHHH-H-HH-HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HH-------
Confidence 99887765432 1 00 000000011223444555677889999999999998887554210 10110 00
Q ss_pred HHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 001255 706 RALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLM 785 (1113)
Q Consensus 706 ~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1113)
.+-..+...++
T Consensus 259 --------~l~~~~~~~~~------------------------------------------------------------- 269 (462)
T 1ibr_B 259 --------ALFAITIEAMK------------------------------------------------------------- 269 (462)
T ss_dssp --------THHHHHHHHHH-------------------------------------------------------------
T ss_pred --------HHHHHHHHHHc-------------------------------------------------------------
Confidence 00000000000
Q ss_pred cCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCC
Q 001255 786 TGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHH 865 (1113)
Q Consensus 786 ~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1113)
T Consensus 270 -------------------------------------------------------------------------------- 269 (462)
T 1ibr_B 270 -------------------------------------------------------------------------------- 269 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHh--------------------cCCchhhHHhHHH
Q 001255 866 KPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASV--------------------ANDHSIWTKYFNQ 925 (1113)
Q Consensus 866 ~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~--------------------~~~~~~~~~~f~~ 925 (1113)
+.+ ...|..|++-+..+.. .........++..
T Consensus 270 -------------------------~~~---~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 270 -------------------------SDI---DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp -------------------------CSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred -------------------------CCc---hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 000 0001111110000000 0011122234567
Q ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 926 ILTAVLEVLDD-------ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 926 ll~~Ll~~L~D-------~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
++..|+..+.+ .+..+|..|+.+|..|+...+ +..+..+++.+.+.+.|....+|.+|..++..++..+.
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 77778777743 345799999999999999877 35667788888889999999999999999999997665
Q ss_pred h-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHH-HHhhhhhHHHHHHHHhc
Q 001255 999 P-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE-LMAQLPSFLPALFEAFG 1053 (1113)
Q Consensus 999 p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~-l~~~L~~lip~l~~~l~ 1053 (1113)
+ ..+++.|.+.+.+.++..+..|...|+.+.+..+... ..++++.++|.|.++++
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 3 3588999999988888899999999999998887533 23578888888887664
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.02 E-value=1.1e-07 Score=116.87 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=123.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
.+.+.|.-.|.-|+..|.++. .. .-...++..+.+.+.|+|..|-..+..++..+.....+.+.+ ..++
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~---~~------~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~ 162 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR---VD------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFL 162 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC---SG------GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHH
T ss_pred HcCCCCHHHHHHHHHHHHcCC---hH------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHH
Confidence 467888999988888776653 11 123456777888899999999999999999999865543432 4577
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhhCCcc-------chHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 001255 574 PHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD-------SLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSG 646 (1113)
Q Consensus 574 ~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~-------~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~ 646 (1113)
+.|.+.|.|.-..|+..|..+|..+.+.-+.. ..+..|++.+. ..+|.+++.+|+++.. +. + .
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-~~~~~~q~~il~~l~~-l~-----~---~ 232 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-ECTEWGQIFILDCLSN-YN-----P---K 232 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHT-SC-----C---C
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-CCCchHHHHHHHHHHH-hC-----C---C
Confidence 88888889998899999999999998764421 12444554443 3678999988887742 21 1 1
Q ss_pred ChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHh
Q 001255 647 NLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 682 (1113)
Q Consensus 647 ~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~ 682 (1113)
........+..+..++.+.|+.|+..|+.+++.+..
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 224567788889999999999999999999988753
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.97 E-value=3e-07 Score=112.90 Aligned_cols=176 Identities=12% Similarity=0.107 Sum_probs=120.7
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+.|+-+ .+.+.|=.+|++++..|--+...|... . . +...+.+.+.++++.+-+++--.+..++...
T Consensus 15 ~~~i~~--~L~~~~~~~k~~~~~kli~~~~~G~d~-~----~---~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~---- 80 (591)
T 2vgl_B 15 IFELKA--ELNNEKKEKRKEAVKKVIAAMTVGKDV-S----S---LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ---- 80 (591)
T ss_dssp HHHHHH--HTTSSCHHHHHHHHHHHHHHHHTTCCC-G----G---GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHH--HHcCCCHHHHHHHHHHHHHHHHCCCCh-H----H---HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----
Confidence 466666 467888889999999999888777642 1 1 1222345788888877766655555555432
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 645 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~ 645 (1113)
.+.+..++..+.+-|.|..+.+|..|..+|..++..--.+.+++.|.+.+. ..+|-||..++.-+...+. ..++.
T Consensus 81 ~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~---~~p~~- 155 (591)
T 2vgl_B 81 PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHD---INAQM- 155 (591)
T ss_dssp HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHH---SSCCC-
T ss_pred chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh---hChhh-
Confidence 244566677777788999999999887777665422112334555666554 5799999998877765443 22221
Q ss_pred CChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhh
Q 001255 646 GNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 646 ~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
..-..+++.+..++.|+++.||.+|..+|..+...
T Consensus 156 ---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 156 ---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp ---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred ---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 11125889999999999999999999999998754
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.90 E-value=5.1e-07 Score=105.96 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKY-FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHV 974 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~-f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~ 974 (1113)
++.|..++..|..+...... ..... -..++..|...|.+.+..++..|+.+|..|+..........+. .+++.|+..
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 35666666666655432211 00000 1235667788888889999999999999998754433322222 488999999
Q ss_pred hCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh-hhHHH
Q 001255 975 TKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLP 1046 (1113)
Q Consensus 975 ~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L-~~lip 1046 (1113)
+.++...|+..|..++..++...+. ..+++.|...+.+.+...+..++..|..+.....++.+...+ ..++|
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 9999999999999999988853221 247788888888888888888888999988664544443322 35789
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.+...+.+.+.+||+.|..+|..+...-.
T Consensus 365 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 365 PLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 99999999999999999999998887544
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.76 E-value=3.3e-06 Score=101.65 Aligned_cols=391 Identities=16% Similarity=0.171 Sum_probs=233.8
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcC-CCchhHHHHhHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHhhC
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCR 562 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~-~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~~L~~l~~l~~~~~ 562 (1113)
.+.|++. .+.|.|=..+++|+..+++++... ++.++.+- +. .++..|+..|.. .|..|...+.-+|+.|+....
T Consensus 58 ~i~~~v~--~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii-~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVK--GINSNNLESQLQATQAARKLLSREKQPPIDNII-RA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHH--HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHH-HT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHH--HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 4788888 678999999999999999999654 33333221 11 246678888875 456777788888988875421
Q ss_pred cchHHHHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC-------ccchHHHHHHhhccCC----CHHHHHHHHH
Q 001255 563 KPFESYME--RILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS-------VDSLLPALLRSLDEQR----SPKAKLAVIE 629 (1113)
Q Consensus 563 ~~~~~~l~--~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~-------~~~~l~~l~~~~~~~k----npkvk~~~L~ 629 (1113)
.-...+. ..+|.|+..|.+....+|+.|..+|-.+....+ -.-.++.|...+.... ...++..+ .
T Consensus 134 -e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a-~ 211 (510)
T 3ul1_B 134 -EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL-T 211 (510)
T ss_dssp -HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH-H
T ss_pred -HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH-H
Confidence 1222222 378999999987778899999999988863221 1113455666664321 22232222 2
Q ss_pred HHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHh
Q 001255 630 FAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 709 (1113)
Q Consensus 630 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~ 709 (1113)
|....+.. +............+++.++.++.+.+.+|+..|..+|..|-.+. .....++ +.
T Consensus 212 ~~L~nl~~---~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-------------~~~~~~i---~~ 272 (510)
T 3ul1_B 212 WTLSNLCR---NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-------------NERIEMV---VK 272 (510)
T ss_dssp HHHHHHHC---CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-------------HHHHHHH---HT
T ss_pred HHHHHHhh---cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-------------hhhHHHH---Hh
Confidence 33223332 11111122334567777888888889999988887777664211 0110110 00
Q ss_pred hhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC
Q 001255 710 QYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSM 789 (1113)
Q Consensus 710 ~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 789 (1113)
.+.
T Consensus 273 ---~g~-------------------------------------------------------------------------- 275 (510)
T 3ul1_B 273 ---KGV-------------------------------------------------------------------------- 275 (510)
T ss_dssp ---TTC--------------------------------------------------------------------------
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcc
Q 001255 790 GHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSA 869 (1113)
Q Consensus 790 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1113)
T Consensus 276 -------------------------------------------------------------------------------- 275 (510)
T 3ul1_B 276 -------------------------------------------------------------------------------- 275 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 870 IKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLI 949 (1113)
Q Consensus 870 ~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L 949 (1113)
++.|+..|...+ +..+..++..|..+..........-.-...+..|...|.+.+..++..|+.+|
T Consensus 276 ------------i~~Lv~lL~~~~---~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 276 ------------VPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ------------HHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ------------chhhhhhhcCCC---hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 111122222111 23344444444443322110000000011233455667788889999999999
Q ss_pred HHHHHhchhhhhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh--------HHHHhhhhhccCChhHHHH
Q 001255 950 NEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVT 1020 (1113)
Q Consensus 950 ~~L~~~~~~~~~~~-~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~--------~l~~l~~~l~s~~~~~~~~ 1020 (1113)
..|+.......... -..++|.|++.+.+....|+..|..|+..++....++. +++.|..+|.+.+......
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 99986544333222 23588999999998889999999999988887665542 5788888898888888888
Q ss_pred HHHHHHHHHHh---hCH-HHHHhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1021 CINCLTKLVGR---LSQ-EELMAQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1021 al~~L~~lie~---~~~-~~l~~~L~--~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+++.|..+++. .+. +.+...+. ..+..|-....|.+.+|++.|...+-.+|.
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888777643 332 22211111 124456666679999999999998766653
No 29
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.75 E-value=1.1e-05 Score=97.47 Aligned_cols=393 Identities=16% Similarity=0.185 Sum_probs=233.8
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcC-CCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhC
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCR 562 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~-~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~ 562 (1113)
.+.+++. .+.|.|=..+.+|+..+.+++... ++.++.+. +. .++..|+..|. +.|..+...+.-+|..|+....
T Consensus 77 ~l~~lv~--~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii-~~-G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVK--GINSNNLESQLQATQAARKLLSREKQPPIDNII-RA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHH--HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHH-HT-THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHH--HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHH-HC-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4678887 578999999999999999999654 33333221 11 25667778775 4567788888888888875432
Q ss_pred cchHHHH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC-------ccchHHHHHHhhccCCCHHHHHHH---HHHH
Q 001255 563 KPFESYM-ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS-------VDSLLPALLRSLDEQRSPKAKLAV---IEFA 631 (1113)
Q Consensus 563 ~~~~~~l-~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~-------~~~~l~~l~~~~~~~knpkvk~~~---L~~l 631 (1113)
...+.-+ ...+|.|+.-|.+....+|..|..+|..+...-+ -.-.++.|...+...........+ +.|.
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 1111111 1378999998887778899999999988863211 111345666666433211111222 2233
Q ss_pred HHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhh
Q 001255 632 ISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 711 (1113)
Q Consensus 632 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~ 711 (1113)
...+.. +............+++.++.++.+.+++|+..|..+|..|..+. .....++ +.
T Consensus 233 L~nl~~---~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~v---~~-- 291 (529)
T 3tpo_A 233 LSNLCR---NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-------------NERIEMV---VK-- 291 (529)
T ss_dssp HHHHHC---CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-------------HHHHHHH---HT--
T ss_pred HHHHHh---cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-------------hhhHHHH---Hh--
Confidence 333322 11111122334567777888888888999888887776665321 0110110 00
Q ss_pred chhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCC
Q 001255 712 TPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGH 791 (1113)
Q Consensus 712 ~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 791 (1113)
.++
T Consensus 292 -~g~---------------------------------------------------------------------------- 294 (529)
T 3tpo_A 292 -KGV---------------------------------------------------------------------------- 294 (529)
T ss_dssp -TTC----------------------------------------------------------------------------
T ss_pred -ccc----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccc
Q 001255 792 AMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIK 871 (1113)
Q Consensus 792 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1113)
T Consensus 295 -------------------------------------------------------------------------------- 294 (529)
T 3tpo_A 295 -------------------------------------------------------------------------------- 294 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 872 TNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE 951 (1113)
Q Consensus 872 ~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~ 951 (1113)
++.|+..|...+ +..+..++..|..++.........-.-..++..|...|.+.+..++..|+.+|..
T Consensus 295 ----------i~~Lv~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 295 ----------VPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp ----------HHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHhcCCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111122222111 2334444444444332211000000001124456777888889999999999999
Q ss_pred HHHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh--------HHHHhhhhhccCChhHHHHHH
Q 001255 952 MLKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVTCI 1022 (1113)
Q Consensus 952 L~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~--------~l~~l~~~l~s~~~~~~~~al 1022 (1113)
|+........... ..++|.|+..+.+....|+..|..|+..++....++. +++.|+.+|.+.+......++
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 9875443333222 2488999999999989999999999988887666543 578888899888888888888
Q ss_pred HHHHHHHH---hhCH-HHHHhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1023 NCLTKLVG---RLSQ-EELMAQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1023 ~~L~~lie---~~~~-~~l~~~L~--~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+.|..+++ ..+. +.+...+. ..+..|.....|.+.+|++.|...+-.+|.
T Consensus 442 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 442 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88877763 2222 22211111 123445555679999999999998876654
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.74 E-value=4.8e-06 Score=100.53 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH-HHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFN-QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLHV 974 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~-~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~-~~~l~~ll~~ 974 (1113)
+..|..|+..|..+...... .....+. .++..|...|.+.+..++..|+.+|..|+..........+ ..+++.|+..
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 349 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQE-AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHH-HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH
Confidence 35666666666655533211 1111111 4566788888899999999999999999875443333332 2588999999
Q ss_pred hCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH--HHHHhhh-hhH
Q 001255 975 TKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ--EELMAQL-PSF 1044 (1113)
Q Consensus 975 ~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~--~~l~~~L-~~l 1044 (1113)
+.+....|+..|..++..++...+. ..+++.|..++.+.++..+..|+..|..++..... +.+...+ ..+
T Consensus 350 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 9999999999999999988864322 23677888888878888888999999999865443 3332111 347
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1045 LPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1045 ip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
+|.|...+.+.+++||..|..+|..+.....
T Consensus 430 l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 430 IKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999988876543
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.59 E-value=3.3e-05 Score=93.01 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=137.7
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
++.|+..|.+.+ ++.+..|+..|..+...... .....+ ..++..|...|.+.+..++..|+.+|..|+.......
T Consensus 246 l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 246 LPALARLIHSND---EEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HHHHHHHTTCCC---HHHHHHHHHHHHHHTSSCHH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 566666665543 67899999888877644321 111111 1356778889999999999999999999997443333
Q ss_pred hhHH-HHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhccCChhHHHHHHHHHHHHHH
Q 001255 961 EDSV-EIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCINCLTKLVG 1030 (1113)
Q Consensus 961 ~~~~-~~~l~~ll~~~~Ds-~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s~~~~~~~~al~~L~~lie 1030 (1113)
...+ ..+++.|+..+.+. ...|+..|..++..++.. .+. .+++.|..++.+.+...+..|+..|..+..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 2222 24688888888888 899999999999988864 222 357778888888888888899999999986
Q ss_pred hhCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1031 RLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1031 ~~~~~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
....+.+...+ ..++|.+...+.+.+.+|+..|..+|..++....
T Consensus 401 ~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 401 GGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 64444432211 3578999999999999999999999988876543
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.58 E-value=9.7e-06 Score=99.97 Aligned_cols=162 Identities=15% Similarity=0.249 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
...|..||..|..++... ...|......++.++.|.+..||..|+.+|..|+... . ++.++..+++.+.
T Consensus 327 ~~vr~~aL~~L~~i~~~~-----p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~--n----v~~iv~eL~~~l~ 395 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTD-----HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN--N----IRGMMKELLYFLD 395 (618)
T ss_dssp TTTHHHHHHHHHHHHHHH-----HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS--S----THHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhC-----HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccc--c----HHHHHHHHHHHHH
Confidence 478888888888777542 1235566667888888888889999999888887631 1 2345666666666
Q ss_pred CChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
+...+++..+..++..++..+++. .+++.+...+..........++..+..++.+.+ + .-..+++.+.+.+.+
T Consensus 396 ~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p--~---l~~~~v~~L~~~l~~ 470 (618)
T 1w63_A 396 SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV--E---MHAYTVQRLYKAILG 470 (618)
T ss_dssp HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC--S---THHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh--h---HHHHHHHHHHHHHhc
Confidence 677888998888998888887553 588888888875544344455666677776544 1 124567888888875
Q ss_pred --CCHHHHHHHHHHHHHHHHHh
Q 001255 1055 --QSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1055 --~~seVRkaAv~clv~i~~~l 1074 (1113)
....+.+++..|+-++...+
T Consensus 471 ~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 471 DYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhhhHHHh
Confidence 33444455666665554333
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.57 E-value=0.00012 Score=92.62 Aligned_cols=412 Identities=12% Similarity=0.078 Sum_probs=235.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHH--HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE--KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 572 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~--~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~l 572 (1113)
+.++..|..|+..|.++...... . ..+. .+++.|...|.+.+..|...++.+|..|..... .....+ ...
T Consensus 204 ~~d~~vr~~Aa~aL~~Ls~~~~~-~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~ 277 (780)
T 2z6g_A 204 TNDVETARCTSGTLHNLSHHREG-L----LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGG 277 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTSHHH-H----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCchh-H----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCC
Confidence 45999999999999996554211 1 1222 367788899999999999999999999998754 333333 368
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhhC-------CccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 001255 573 LPHVFSRLIDPKELVRQPCSTTLDIVSKTY-------SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 645 (1113)
Q Consensus 573 l~~ll~klgD~K~~vr~~a~~~L~~i~e~~-------~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~ 645 (1113)
++.|++-|.+....++..+..+|..|.... --.-.++.|.+++.+......+..++.-|. .+... ..
T Consensus 278 v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~-~Ls~~---~~-- 351 (780)
T 2z6g_A 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK-VLSVC---SS-- 351 (780)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHH-HHHTS---TT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH-HhhcC---hH--
Confidence 899999998766668888888888776321 112345667766654333333333322222 23211 00
Q ss_pred CChhhH--HHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHH
Q 001255 646 GNLGIL--KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 723 (1113)
Q Consensus 646 ~~~~~~--~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l 723 (1113)
+...+ .-.++.++.++.+.+.++++.|..+|..|....... ... .+....+...|+...+.+.......+
T Consensus 352 -~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------~~~-~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 352 -NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGM-EGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp -HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC------SCC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh------hhh-hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 10111 114677888888889999999988888877532110 000 01111111111100000000000000
Q ss_pred HhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhh
Q 001255 724 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 803 (1113)
Q Consensus 724 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~ 803 (1113)
.+= ..+ ..+.....
T Consensus 424 ~~L-------------------------------------------------------------~~~---~~~~~~~i-- 437 (780)
T 2z6g_A 424 SNL-------------------------------------------------------------TCN---NYKNKMMV-- 437 (780)
T ss_dssp HHH-------------------------------------------------------------TSS---CHHHHHHH--
T ss_pred HHH-------------------------------------------------------------HhC---CHHHHHHH--
Confidence 000 000 00000000
Q ss_pred ccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChH
Q 001255 804 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 883 (1113)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~ 883 (1113)
. ....++
T Consensus 438 ----------------------------------------------------------~---------------~~g~i~ 444 (780)
T 2z6g_A 438 ----------------------------------------------------------C---------------QVGGIE 444 (780)
T ss_dssp ----------------------------------------------------------H---------------TTTHHH
T ss_pred ----------------------------------------------------------H---------------HCCCHH
Confidence 0 001256
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch---hhHHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhchhh
Q 001255 884 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHS---IWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 884 ~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~---~~~~~f~~ll~~Ll~~L~D~n~-~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.|+..|.+.++. .+.|..|+..|..+....... .+.-.-...+..|...|.+.+. .++..|+.+|..|+......
T Consensus 445 ~Lv~lL~~~~~~-~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 445 ALVRTVLRAGDR-EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHccCCH-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH
Confidence 677777654321 267888888888775322210 0000011236667888877664 89999999999998632221
Q ss_pred hhhHH-HHHHHHHHHHhCCC----------------------hHHHHHHHHHHHHHHHhh------cChhhHHHHhhhhh
Q 001255 960 MEDSV-EIVIEKLLHVTKDA----------------------VPKVSNEAEHCLTVVLSQ------YDPFRCLSVIVPLL 1010 (1113)
Q Consensus 960 ~~~~~-~~~l~~ll~~~~Ds----------------------~~~Vr~aa~~~l~~l~~~------~~p~~~l~~l~~~l 1010 (1113)
.... ..+++.|++.+.+. ...|+..+..||..++.. +-...+++.|...+
T Consensus 524 -~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL 602 (780)
T 2z6g_A 524 -APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL 602 (780)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGG
T ss_pred -HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHH
Confidence 1121 13566666665442 245677777777766531 11224678888888
Q ss_pred ccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhh--HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1011 VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPS--FLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1011 ~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~--lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.+.+...+..|...|..+... +.....+.. .++.|.+.+.|.+.+||+.|..+|..+..
T Consensus 603 ~~~~~~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 603 YSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 888887777788888877632 222222322 57889999999999999999998877664
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.49 E-value=0.00022 Score=88.17 Aligned_cols=413 Identities=12% Similarity=0.075 Sum_probs=238.8
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHH--HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH-HHHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE--KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM-ERIL 573 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~--~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l-~~ll 573 (1113)
+.++..|..|+..|..+..... .. ..+. ..+..|.++|.+.+..|...++.+|..++........... ...+
T Consensus 68 ~~~~~~~~~A~~~L~~Ls~~~~-~~----~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i 142 (644)
T 2z6h_A 68 TNDVETARCTAGTLHNLSHHRE-GL----LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL 142 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHH-HH----HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcChh-hH----HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCCh
Confidence 4588899999999997654421 11 1222 3677888999999999999999999999987533333332 4689
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhhC-------CccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 001255 574 PHVFSRLIDPKELVRQPCSTTLDIVSKTY-------SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSG 646 (1113)
Q Consensus 574 ~~ll~klgD~K~~vr~~a~~~L~~i~e~~-------~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~ 646 (1113)
|.|++.|.+....++..+..+|..+.... --.-.++.|.+.+.+....+++..++..|.. +.. .+ .
T Consensus 143 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n-Ls~---~~---~ 215 (644)
T 2z6h_A 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV-LSV---CS---S 215 (644)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHH-HTT---CT---T
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHH-Hhc---Cc---c
Confidence 99999998666668888888888777421 1112356777766554455665555555432 321 10 0
Q ss_pred ChhhHH--HHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 001255 647 NLGILK--LWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 724 (1113)
Q Consensus 647 ~~~~~~--~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~ 724 (1113)
+...+. -.++.++.++.+.+.+++..+..+|..|.... +. ...+ .+..+.+.+.|..-.+++.......+.
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~-~~-----~~~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TK-----QEGM-EGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC-TT-----CCSC-HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc-hh-----hhhh-hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111111 14677888888889999999999998886532 11 0000 011111111111000000000000000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhc
Q 001255 725 SKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 804 (1113)
Q Consensus 725 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~ 804 (1113)
+=. . + ...+....
T Consensus 289 ~L~---------------------------~----------------------------------~---~~~~~~~v--- 301 (644)
T 2z6h_A 289 NLT---------------------------C----------------------------------N---NYKNKMMV--- 301 (644)
T ss_dssp HHH---------------------------T----------------------------------T---CHHHHHHH---
T ss_pred HHH---------------------------c----------------------------------C---CHHHHHHH---
Confidence 000 0 0 00000000
Q ss_pred cccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHH
Q 001255 805 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 884 (1113)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ 884 (1113)
.+ ...++.
T Consensus 302 -----------------------------------------------------------------------~~-~g~v~~ 309 (644)
T 2z6h_A 302 -----------------------------------------------------------------------CQ-VGGIEA 309 (644)
T ss_dssp -----------------------------------------------------------------------HH-TTHHHH
T ss_pred -----------------------------------------------------------------------HH-cCCHHH
Confidence 00 002456
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch-hhHHhH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhchhhh
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHS-IWTKYF--NQILTAVLEVLDDAD-SSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~-~~~~~f--~~ll~~Ll~~L~D~n-~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
|+..|.+.++. ++.+..|+..|..+....... .+...+ ...+..|.+.|.+.+ ..++..|+.+|..|+......
T Consensus 310 Lv~lL~~~~~~-~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~- 387 (644)
T 2z6h_A 310 LVRTVLRAGDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH- 387 (644)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-
T ss_pred HHHHHHccCCc-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-
Confidence 66666654322 578889998888876432211 111101 234677888887764 689999999999998643322
Q ss_pred hhH-HHHHHHHHHHHhCC----------------------ChHHHHHHHHHHHHHHHhhc------ChhhHHHHhhhhhc
Q 001255 961 EDS-VEIVIEKLLHVTKD----------------------AVPKVSNEAEHCLTVVLSQY------DPFRCLSVIVPLLV 1011 (1113)
Q Consensus 961 ~~~-~~~~l~~ll~~~~D----------------------s~~~Vr~aa~~~l~~l~~~~------~p~~~l~~l~~~l~ 1011 (1113)
... -..+++.|++.+.+ ....|+.++..|+..++... .-..+++.|..++.
T Consensus 388 ~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 388 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc
Confidence 111 12356666666554 23567777777777665321 11236778888888
Q ss_pred cCChhHHHHHHHHHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1012 TEDEKTLVTCINCLTKLVGRLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1012 s~~~~~~~~al~~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+.+...+..|...|..+... +.....+ ...++.|.+.+.|.+++||++|..+|..+..
T Consensus 468 ~~~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 77777777777777777632 1221111 2246788999999999999999998876643
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.48 E-value=0.00057 Score=81.68 Aligned_cols=409 Identities=12% Similarity=0.075 Sum_probs=231.7
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHH--HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE--KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 572 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~--~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~l 572 (1113)
+.+|..|..+...|.++..... ....+. ..++.|.+++.+.+..|...++.+|..+..... .....+ ...
T Consensus 71 ~~~~~~~~~a~~~L~~ls~~~~-----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~ 144 (529)
T 1jdh_A 71 TNDVETARCTAGTLHNLSHHRE-----GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGG 144 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHH-----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHcCch-----hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCC
Confidence 4699999999999999754421 112222 367788899999999999999999999988743 223333 468
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhhC-------CccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 001255 573 LPHVFSRLIDPKELVRQPCSTTLDIVSKTY-------SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 645 (1113)
Q Consensus 573 l~~ll~klgD~K~~vr~~a~~~L~~i~e~~-------~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~ 645 (1113)
+|.|++-+.+....++..+..+|..+.... -..-.++.|...+.+......+..++..+. .+. ..+.
T Consensus 145 i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~-~l~---~~~~-- 218 (529)
T 1jdh_A 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK-VLS---VCSS-- 218 (529)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH-HHT---TSTT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH-HHh---cCcc--
Confidence 999999998777778888888888776421 111235666666654444444444444433 232 1111
Q ss_pred CChhhH--HHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHH
Q 001255 646 GNLGIL--KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 723 (1113)
Q Consensus 646 ~~~~~~--~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l 723 (1113)
+...+ .-.++.++.++.+.++++++.|..+|..|....... ... .+..+.+.+.+....++........+
T Consensus 219 -~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 219 -NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGM-EGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp -HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC------SCC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh------HHH-HhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11111 125677888888889999999998888877542110 000 01111111111100000000000000
Q ss_pred HhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhh
Q 001255 724 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 803 (1113)
Q Consensus 724 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~ 803 (1113)
.+= .. + ..+.....
T Consensus 291 ~~L---------------------------~~----------------------------------~---~~~~~~~~-- 304 (529)
T 1jdh_A 291 SNL---------------------------TC----------------------------------N---NYKNKMMV-- 304 (529)
T ss_dssp HHH---------------------------TT----------------------------------T---CHHHHHHH--
T ss_pred HHH---------------------------hc----------------------------------C---CHHHHHHH--
Confidence 000 00 0 00000000
Q ss_pred ccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChH
Q 001255 804 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 883 (1113)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~ 883 (1113)
.+ ...++
T Consensus 305 ------------------------------------------------------------------------~~-~~~v~ 311 (529)
T 1jdh_A 305 ------------------------------------------------------------------------CQ-VGGIE 311 (529)
T ss_dssp ------------------------------------------------------------------------HH-TTHHH
T ss_pred ------------------------------------------------------------------------HH-cCChH
Confidence 00 00245
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc-hhhHHhH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhchhh
Q 001255 884 QILHLMCNGNDGSPTSKHGALQQLIKASVANDH-SIWTKYF--NQILTAVLEVLDDAD-SSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 884 ~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~-~~~~~~f--~~ll~~Ll~~L~D~n-~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.++..|.+.++. ++.+..|+..|..+...... ..+...+ ...+..|...|.+.+ ..++..++.+|..|+......
T Consensus 312 ~L~~ll~~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~ 390 (529)
T 1jdh_A 312 ALVRTVLRAGDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390 (529)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHHccCCH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh
Confidence 666666654332 57889999988887644321 1111111 123566788888776 589999999999998643222
Q ss_pred hhhHH-HHHHHHHHHHhCCChHHHHHH----------------------HHHHHHHHHhhc------ChhhHHHHhhhhh
Q 001255 960 MEDSV-EIVIEKLLHVTKDAVPKVSNE----------------------AEHCLTVVLSQY------DPFRCLSVIVPLL 1010 (1113)
Q Consensus 960 ~~~~~-~~~l~~ll~~~~Ds~~~Vr~a----------------------a~~~l~~l~~~~------~p~~~l~~l~~~l 1010 (1113)
..+. ..++|.|++.+.+....|+.. +..++..++... --..+++.|...+
T Consensus 391 -~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll 469 (529)
T 1jdh_A 391 -APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 469 (529)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred -HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHH
Confidence 2222 246788888777665556553 333333333211 0113567778888
Q ss_pred ccCChhHHHHHHHHHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1011 VTEDEKTLVTCINCLTKLVGRLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1011 ~s~~~~~~~~al~~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
.+.+...+..+...|..+... . .....+ ...++.|.+.+.|.+++||+.|..+|..
T Consensus 470 ~~~~~~v~~~a~~~l~~l~~~--~-~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 470 YSPIENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp GCSCHHHHHHHHHHHHHHTTS--H-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhcC--H-HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 777777777777777776532 1 111111 2456889999999999999999988754
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.40 E-value=8.1e-06 Score=87.93 Aligned_cols=188 Identities=15% Similarity=0.260 Sum_probs=139.1
Q ss_pred CCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Q 001255 879 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 879 ~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~ 957 (1113)
.+..+.+.+.|...+ .+.|..|+..|..++.... ......+ ..++..|...|.+.+..++..|+.+|..|+....
T Consensus 11 ~~~~~~~~~~L~s~~---~~~~~~a~~~L~~~l~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDD---MQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHSSC---SSHHHHHHHHHHHHHHHHH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCC-chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 344788888888776 4789999999988776521 1111111 2356778889999899999999999999987433
Q ss_pred hhhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHH
Q 001255 958 DVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1029 (1113)
Q Consensus 958 ~~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~li 1029 (1113)
......++ ..++.|+..+.+....|++.|..++..++...+.. .+++.|...+.+.++..+..|+..|..+.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22222222 47899999999999999999999999887653322 37888899998888888888888888887
Q ss_pred HhhCHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1030 GRLSQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1030 e~~~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
... .+..... -..++|.|+..+.+.+.+||..|..+|..+.
T Consensus 167 ~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 167 SGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp TSC-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred cCC-hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 432 2222111 1467899999999999999999999999886
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.39 E-value=9.9e-06 Score=84.70 Aligned_cols=184 Identities=16% Similarity=0.244 Sum_probs=133.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFN--QILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~--~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.+-++..|.+.+ ++.|.+|+..|..+........ ..+- ..+..|...|.+.+..+++.|+.+|..|+......
T Consensus 14 ~~~l~~LL~s~~---~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 445555555443 6899999999988875432111 1111 45778889999999999999999999998643322
Q ss_pred hhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 960 MEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 960 ~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
....+ ...++.|++.+.+....|+..|..++..++...+. ..+++.|...+.+.+...+..|+..|..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 24789999999999999999999999998864222 13688888888888888888889889888853
Q ss_pred hCHHHHHh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1032 LSQEELMA-QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1032 ~~~~~l~~-~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
+.+.... .-..++|.|.+.+.+.+.+||+.|..+|..+.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2222211 12357899999999999999999999987764
No 38
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.37 E-value=7.6e-06 Score=87.63 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=141.0
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF--NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f--~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
++.+++.|.+.+ .+.|..|+..|..+........ ..+ ...+..|...|.+.+..++..|+.+|..|+......
T Consensus 46 i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 120 (252)
T 4hxt_A 46 VEVLVKLLTSTD---SEVQKEAARALANIASGPDEAI--KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHHHcCChHHH--HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 677787777654 5789999999888775432111 111 135777888888999999999999999999643332
Q ss_pred hhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 960 MEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 960 ~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
..... ...++.|++.+.+....|+..+..++..++...+.. .+++.|...+.+.+...+..|+..|..+...
T Consensus 121 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 22222 247899999999999999999999999888653221 2788889999888888888888888888742
Q ss_pred hCHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhH
Q 001255 1032 LSQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL 1079 (1113)
Q Consensus 1032 ~~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~ 1079 (1113)
..+..... -..++|.+.+.+.+.+++||+.|..+|..+...-++...
T Consensus 201 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 201 -PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp -BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred -CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccc
Confidence 22222111 145789999999999999999999999998876665433
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.33 E-value=1.4e-05 Score=98.54 Aligned_cols=170 Identities=12% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
.+.+.+.-.|+.|+..+.++....+. .+..+.+.+...+.|.|..|...++.+|.++..... ++..++..++
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~-------~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~-~~~~~~~~~v 221 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPE-------LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-DMLAHFRKLV 221 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGG-------GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH-HHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh-HHHHHHHHHH
Confidence 56789999999999999999987543 223566677888999999999999999999876432 2234455667
Q ss_pred HHHHHHhcC---------------CchhhHHHHHHHHHHHHhhCCc--cchHHHHHHhhc---cCC--CHHHHHHHHHHH
Q 001255 574 PHVFSRLID---------------PKELVRQPCSTTLDIVSKTYSV--DSLLPALLRSLD---EQR--SPKAKLAVIEFA 631 (1113)
Q Consensus 574 ~~ll~klgD---------------~K~~vr~~a~~~L~~i~e~~~~--~~~l~~l~~~~~---~~k--npkvk~~~L~~l 631 (1113)
|.+++.|.+ .-++++-.+.++|..+....+. +.+++.|.+.+. ..+ ++-|..++...+
T Consensus 222 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 222 PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 777765543 2466676776666665543211 122333333321 112 234555544443
Q ss_pred HHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001255 632 ISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 632 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~ 681 (1113)
.. + .. .+.....++..+..++.+++++||..|...|..|-
T Consensus 302 ~~-l-----~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 302 MD-I-----KS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp HH-S-----CC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred Hh-c-----CC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 31 1 00 11112234555555566666666666666666554
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.32 E-value=1.5e-05 Score=85.37 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=138.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
++.++..|.+.+ ++.|..|+..|..+...... .....+ ..++..|...|.+.+..++..|+.+|..|+.......
T Consensus 4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 677888887665 57899999999988766531 111111 1357778899999999999999999999987533222
Q ss_pred hhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 961 EDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 961 ~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
...+ ...++.++..+.+....|+..|..++..++...+.. .+++.|...+.+.++..+..|+..|..+....
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 2222 247899999999999999999999999988543221 36888888888888888888899888887532
Q ss_pred CHHHHHh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1033 SQEELMA-QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1033 ~~~~l~~-~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+ +.... .-..++|.+...+.+.+.+||..|..+|..+..
T Consensus 160 ~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 160 D-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 2 22111 125678999999999999999999999988875
No 41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.32 E-value=0.0026 Score=82.43 Aligned_cols=185 Identities=11% Similarity=0.141 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH--HHh
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL--HVT 975 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll--~~~ 975 (1113)
.-+...++.|..++...+..........++..+...|..........++.++..++... ..|.+|...+++.++ +.+
T Consensus 614 ~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~ 692 (960)
T 1wa5_C 614 RFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVW 692 (960)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGG
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHh
Confidence 45666788888777765544555556677777777776555557777899999988876 567788777888887 666
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCh-----hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDP-----FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1050 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p-----~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~ 1050 (1113)
+... ....+..++..++...+. +.++.++...+.++.. ...++.+++.++..++.+.+.+.++.+++.+..
T Consensus 693 ~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~ 768 (960)
T 1wa5_C 693 ELKG--NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ 768 (960)
T ss_dssp CCTT--THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH
T ss_pred cCCC--CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 5542 334555666665544332 3355554444544432 366789999999999977688999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCCh
Q 001255 1051 AFGNQ-SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNS 1087 (1113)
Q Consensus 1051 ~l~D~-~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~ 1087 (1113)
.+... ..+.++..+..+..+...+|. .+..++..+.+
T Consensus 769 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~ 807 (960)
T 1wa5_C 769 RLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQD 807 (960)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTST
T ss_pred HHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcch
Confidence 98765 567887777666666666664 46667766643
No 42
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.29 E-value=4.6e-06 Score=105.83 Aligned_cols=200 Identities=14% Similarity=0.178 Sum_probs=156.7
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.++.+|....|+. ...|.+|-..+..++..-+... ...+|+.|+..|.++ ..+....||.+|..|+...+..
T Consensus 96 ~~~~~~~~~~dk~---~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKD---KEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 4678888888876 4688888888888887666543 477888899988666 5789999999999999987888
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHH
Q 001255 960 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 1036 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~ 1036 (1113)
+..++.-++|.+-+++-|.|++|..+|..|+..++..+.... .+|.|...|..- ...-+|++.|.... +=.+.
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l~~~t--fv~~v 244 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLLGATT--FVAEV 244 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHHTTCC--CCSCC
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHhhcCe--eEeee
Confidence 889999999999999999999999999999999998877654 455555545322 22335555443211 11133
Q ss_pred HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhHhhhhcCChhhHh
Q 001255 1037 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AFLPYLERLNSTQLR 1091 (1113)
Q Consensus 1037 l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe--~i~p~l~~L~~s~~k 1091 (1113)
-.+.|..++|.|.+++.++...++..++..+-.+|+.+.+ ++.|||++|-|+-.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence 3467889999999999999999999999999999999986 799999999776543
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.27 E-value=1.8e-05 Score=83.09 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=117.0
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.++.|+..|.+.+ +..|..|+..|..+-. . ..+..|...|.|.+..||..|+..|..+..
T Consensus 20 ~~~~L~~~L~~~~---~~vR~~A~~~L~~~~~---~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDS---YYVRRAAAYALGKIGD---E--------RAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GHHHHHHHTTCSS---HHHHHHHHHHHHHHCC---G--------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHHhCC---c--------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 4788888887654 6899999999875422 1 224557788889999999999998887642
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
...++.|++.+.|+...||..|..++..+. ....++.|...+.+.++..+..++..|+.+- .
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~------ 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALKDEDWFVRIAAAFALGEIG----D------ 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C------
Confidence 124577778889999999999988887653 3457788888888888888988888877752 1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+..+|.|.+.+.|.++.||.+|..+|..+
T Consensus 142 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 142 -ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 23567888889999999999999988766
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.25 E-value=2.6e-05 Score=81.14 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=116.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
.+.++..|.+.+ +..|..|+..|..+-. . ..+..|.+.|.|.+..+|..|+..|..+.. .
T Consensus 16 ~~~~i~~L~~~~---~~vr~~A~~~L~~~~~---~--------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~--- 75 (201)
T 3ltj_A 16 VEMYIKNLQDDS---YYVRRAAAYALGKIGD---E--------RAVEPLIKALKDEDAWVRRAAADALGQIGD---E--- 75 (201)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHCC---G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G---
T ss_pred hHHHHHHhcCCC---HHHHHHHHHHHHhcCC---h--------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H---
Confidence 577888887776 6899999999875422 1 124557788889999999999998877632 1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1041 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L 1041 (1113)
..++.|++.+.|+...||..|..++..+ +....++.|...+.+.++..+..|+..|+.+-.
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 2467778888999999999999888764 334678888888888888888888888776531
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+..+|.|.+.+.|.+..||.+|+.+|..+
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999988766
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.23 E-value=2.5e-05 Score=86.96 Aligned_cols=216 Identities=14% Similarity=0.116 Sum_probs=145.4
Q ss_pred ChHHHHHHhhcCC---------CCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHH-HhcCCCHHHHHHHHHHHH
Q 001255 881 SIPQILHLMCNGN---------DGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLE-VLDDADSSVREVALSLIN 950 (1113)
Q Consensus 881 ~i~~lL~~l~~~~---------~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~-~L~D~n~~vr~~aL~~L~ 950 (1113)
.+.+++..|.+.. ..+.++|..|++.|..++............+. +..|+. .|.+.+..||+.|+.+|.
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~-l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG-MHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTH-HHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCC-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677788887652 11125899999999998864221100011233 456677 888889999999999999
Q ss_pred HHHHhchhhhhhH-HH-HHHHHHHHHhC-CChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHH
Q 001255 951 EMLKNQKDVMEDS-VE-IVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVT 1020 (1113)
Q Consensus 951 ~L~~~~~~~~~~~-~~-~~l~~ll~~~~-Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~ 1020 (1113)
.++..... ...+ ++ ..+|.|+..+. ++...|++.|.-|+..++...++. ..++.|...|.+.+...+..
T Consensus 108 ~ia~~n~~-~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 108 TCSQNVAA-IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHTTCHH-HHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhCCHH-HHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 99975432 2222 22 47888888887 557899999999999998765542 36788888888888888888
Q ss_pred HHHHHHHHHHhhCHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHHHHh
Q 001255 1021 CINCLTKLVGRLSQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANR 1099 (1113)
Q Consensus 1021 al~~L~~lie~~~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~yi~R 1099 (1113)
+.-.|..+... ..+..... =..++|.|+..+.+.+.+||..|..++..+... +...+..+......-..+|+..++.
T Consensus 187 A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 187 SAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHH
Confidence 88888888755 33322111 135789999999999999999999999887654 2333333333322233445555444
Q ss_pred h
Q 001255 1100 I 1100 (1113)
Q Consensus 1100 ~ 1100 (1113)
.
T Consensus 265 l 265 (296)
T 1xqr_A 265 L 265 (296)
T ss_dssp H
T ss_pred c
Confidence 3
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.19 E-value=1.1e-05 Score=86.73 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=136.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFN--QILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~--~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
++.|++.|.+.+ ++.|..|+..|..+........ ..+- ..+..|...|.+.+..+++.|+.+|..|+......
T Consensus 56 i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 56 LPALVQLLSSPN---EQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 677788787665 5789999988888775432111 1121 25778888999999999999999999998765544
Q ss_pred hhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 960 MEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 960 ~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
.....+ ..++.|++.+.+....|+..|..++..++...+. ..+++.|...+.+.+...+..|+..|..+...
T Consensus 131 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 333333 4889999999999899999999999988864322 23678888888888888888888888888732
Q ss_pred hCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1032 LSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1032 ~~~~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
..+.....+ ..++|.+.+.+.+.+++||+.|..||..+..
T Consensus 211 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 211 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred -CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 223222212 3478999999999999999999999876643
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.13 E-value=2.1e-05 Score=82.46 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=116.7
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.++.|+..+.+.+ +..|..|+..|..+-. . ..+..|.+.|.|.+..||..|+..|..+..
T Consensus 51 ~~~~L~~~l~~~~---~~vr~~a~~aL~~~~~---~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 110 (211)
T 3ltm_A 51 AVEPLIKALKDED---AWVRRAAADALGQIGD---E--------RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ 110 (211)
T ss_dssp GHHHHHHHTTCSC---HHHHHHHHHHHHHHCC---G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhhCC---H--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------
Confidence 3677888887654 6899999988876521 1 124557778889999999999999887642
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
...++.|++.+.|+...||..|..++..+ +....++.|...+.+.++..+..+++.|+.+- .
T Consensus 111 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~------ 172 (211)
T 3ltm_A 111 ----ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEIG----G------ 172 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S------
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c------
Confidence 12467778888999999999999988776 34567888889998888888888888777752 1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
+.+++.|.+.+.|.++.||.+|..+|..+...
T Consensus 173 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 173 -ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 44567788888999999999999998766543
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.09 E-value=3.8e-05 Score=79.82 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=115.8
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.++.|+..+.+.+ +..|..|+..|..+- .. ..+..|.+.|.|.+..||..|+..|..+...
T Consensus 46 ~~~~L~~~l~~~~---~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 106 (201)
T 3ltj_A 46 AVEPLIKALKDED---AWVRRAAADALGQIG---DE--------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----- 106 (201)
T ss_dssp GHHHHHHHTTCSS---HHHHHHHHHHHHHHC---CG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhhC---CH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----
Confidence 3677888886554 689999998887542 11 1245577788899999999999999876421
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
..++.|++.+.|+...||..|..++..+. ....++.|...+.+.++..+..+++.|+.+ +.
T Consensus 107 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~------ 167 (201)
T 3ltj_A 107 -----RAVEPLIKALKDEDWFVRIAAAFALGEIG----DERAVEPLIKALKDEDGWVRQSAADALGEI----GG------ 167 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHT----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS------
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc------
Confidence 24666777889999999999998887763 346788888889888888888888887776 22
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+..++.|...+.|.++.||.+|..+|..+
T Consensus 168 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 -ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34567788888999999999999988654
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.08 E-value=0.0011 Score=85.77 Aligned_cols=184 Identities=13% Similarity=0.118 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
...|..++.-|..+...-... .+++..++..|+..| | +.|+..|+..|..|++..+..+.+|++.++..+++.+.
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 468888888877654321111 146778888888888 5 67899999999999999888899999999999999887
Q ss_pred C--ChHHHHHHHHHHHHHHHhhcChhhHHHHhh----hhhc-------cC--C---hhHHHHHHHHHHHHHHhhCH----
Q 001255 977 D--AVPKVSNEAEHCLTVVLSQYDPFRCLSVIV----PLLV-------TE--D---EKTLVTCINCLTKLVGRLSQ---- 1034 (1113)
Q Consensus 977 D--s~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~----~~l~-------s~--~---~~~~~~al~~L~~lie~~~~---- 1034 (1113)
. -...++..+.+|+-.++...+++.+.+++. |.+. .. + ......++++|+.++..++.
T Consensus 595 ~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 674 (971)
T 2x1g_F 595 TGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE 674 (971)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc
Confidence 6 457889999999999998777554333332 2221 11 1 13455677888888776542
Q ss_pred --------HHHHhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1035 --------EELMAQLPSFLPALFEAFGN--QSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1035 --------~~l~~~L~~lip~l~~~l~D--~~seVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
+.+.+....++|.+.+.+++ .+.+|...+..++-.+...+|+++.||++.+
T Consensus 675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~ 735 (971)
T 2x1g_F 675 QATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL 735 (971)
T ss_dssp ---------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHH
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 23345577788888777754 4779999999999999999998888887654
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.03 E-value=0.001 Score=81.81 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=116.8
Q ss_pred HHHHHhh-cCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 884 QILHLMC-NGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 884 ~lL~~l~-~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
.++.-|. +.+ ...|..+|+-|..++.+ .|+..|+..|+..+.+.+...+..++..+..++......++.
T Consensus 372 ~i~~~L~~d~d---~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~ 441 (621)
T 2vgl_A 372 TVINALKTERD---VSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW 441 (621)
T ss_dssp HHHHHHTTCCC---HHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHhccCCC---HhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 3444454 332 35788888888777644 467888888988888888888888888888888876666666
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHh-
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA- 1039 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~- 1039 (1113)
|+. +|..++..-++ .|...+...+..++...+-. ..+..+...+.....+..+ ++...|++..++......
T Consensus 442 ~v~-~Ll~ll~~~~~---~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~l--i~~~~wilGEy~~~~~~~~ 515 (621)
T 2vgl_A 442 YVD-TILNLIRIAGD---YVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENL--VKVGGYILGEFGNLIAGDP 515 (621)
T ss_dssp HHH-HHHHHHHHHGG---GSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHH--HHHHHHHHHHHTHHHHSST
T ss_pred HHH-HHHHHHHhhcc---cchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHH--HHHHHHHhcchHHHhcccC
Confidence 665 34455544443 34444444555555444432 2444455666544443333 455668888887433221
Q ss_pred -h-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1040 -Q-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1040 -~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
. ..+++..+...+.+.+++||-.++.+++.++...++
T Consensus 516 ~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 516 RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp TSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 1 125667888899999999999999999999988764
No 51
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.01 E-value=0.0037 Score=78.31 Aligned_cols=409 Identities=14% Similarity=0.116 Sum_probs=245.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcC----C-CchhHHHHhHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHhhCcch-
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQG----P-KGIQEVIQNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPF- 565 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~----~-~~~~~v~~~l~~l~~~l~~~l~Ds--n~kV~~~~L~~l~~l~~~~~~~~- 565 (1113)
++.+.+-..|..|+..|-++-... + +... ...+..+.+.|+++|.++ +..+...+++.|.++.... +.
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~--~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk 413 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG--DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECK 413 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST--TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchh--hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHH
Confidence 556778888999999998886422 1 1111 134678899999999887 7889999999999997653 44
Q ss_pred HHHH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchH---HHHHHhhccC---CCHHHHHHHH-HHHHHHHh
Q 001255 566 ESYM--ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLL---PALLRSLDEQ---RSPKAKLAVI-EFAISSLN 636 (1113)
Q Consensus 566 ~~~l--~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l---~~l~~~~~~~---knpkvk~~~L-~~l~~~l~ 636 (1113)
..+. ..++|.|++-|......++..+..+|..+....+.+..+ ..+.++...+ ..|+...+.. ++. +.+-
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~-~~Vv 492 (810)
T 3now_A 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI-TVLA 492 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH-HHHH
T ss_pred HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH-HHHH
Confidence 3344 368999999997666678889999998887654333222 2222222211 1344433211 121 1221
Q ss_pred hhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhH
Q 001255 637 KHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIE 716 (1113)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~ 716 (1113)
+. -.++.++.++...++++|+.|..+|..|-. ++. .+..+. + .+.-
T Consensus 493 ea--------------GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~--d~~-~r~~Vv--------------~---~Gai 538 (810)
T 3now_A 493 NE--------------GITTALCALAKTESHNSQELIARVLNAVCG--LKE-LRGKVV--------------Q---EGGV 538 (810)
T ss_dssp HT--------------THHHHHHHHHTCCCHHHHHHHHHHHHHHHT--SHH-HHHHHH--------------H---TTHH
T ss_pred HC--------------cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC--CHH-HHHHHH--------------H---CCCH
Confidence 11 156778888888999999999999999863 221 222221 1 1111
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCch
Q 001255 717 VDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDE 796 (1113)
Q Consensus 717 ~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 796 (1113)
+.|...+++... .+ +....
T Consensus 539 p~Lv~LL~s~~~-------------------~~-----k~~Aa------------------------------------- 557 (810)
T 3now_A 539 KALLRMALEGTE-------------------KG-----KRHAT------------------------------------- 557 (810)
T ss_dssp HHHHHHHHSSCH-------------------HH-----HHHHH-------------------------------------
T ss_pred HHHHHHHccCCH-------------------HH-----HHHHH-------------------------------------
Confidence 222333321100 00 00000
Q ss_pred hhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcC
Q 001255 797 TKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLT 876 (1113)
Q Consensus 797 ~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1113)
....+.... ..|...+...
T Consensus 558 ---~AL~nL~~~----------------------~~p~~~~~~~------------------------------------ 576 (810)
T 3now_A 558 ---QALARIGIT----------------------INPEVSFSGQ------------------------------------ 576 (810)
T ss_dssp ---HHHHHHHHH----------------------SCHHHHTTTH------------------------------------
T ss_pred ---HHHHHHhcC----------------------CChhhhhcch------------------------------------
Confidence 000000000 0000000000
Q ss_pred cCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC--c-hhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 877 DAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVAND--H-SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEML 953 (1113)
Q Consensus 877 d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~--~-~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~ 953 (1113)
...+.++.|+..|..... ...+.+|+..|..+..... . ..... ..++.|...|.+.+..|++.|+.+|..|+
T Consensus 577 ~~~~aIppLv~LL~~~~~--~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCT--ALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HHHHTHHHHHHTTSTTSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhhcHHHHHHHHhCCCCc--HHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 000125566666643211 2345678888877765431 1 11111 23556777777888999999999999998
Q ss_pred HhchhhhhhHHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhhhhccCChhHHHHHHH
Q 001255 954 KNQKDVMEDSVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDEKTLVTCIN 1023 (1113)
Q Consensus 954 ~~~~~~~~~~~~--~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~s~~~~~~~~al~ 1023 (1113)
.... ....+.+ ..++.|+..++.....++++|-.|+..+....+. ..+++.|..++.+.+...+..|+.
T Consensus 652 ~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 652 MSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred CChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 7432 2334442 4788888888888899999999999888763211 347888889999999988888998
Q ss_pred HHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 001255 1024 CLTKLVGRLSQEELMAQL--PSFLPALFEAFGN---QSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1024 ~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D---~~seVRkaAv~clv~i~ 1071 (1113)
.+..++. .+.+. ...+ ..++|.|...+.+ ++++|++.|..+|-.+.
T Consensus 731 aL~NL~~-~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 731 IILNMIN-AGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHT-TCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 8888885 33322 2222 3567888888754 48999999999987664
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.99 E-value=0.0036 Score=79.09 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh------
Q 001255 926 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP------ 999 (1113)
Q Consensus 926 ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p------ 999 (1113)
++..|+..+.+.+..++..++.+|..|+..... +. ....+++.|++.+.+....|+..|..++..++...+.
T Consensus 361 ~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~-~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-CS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-hh-hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356677888888888999999999999976533 21 2356899999999999899999999999888764221
Q ss_pred -hhHHHHhhhhhcc-CCh-hHHHHHHHHHHHHHHhhCHHH-HHh--hhhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Q 001255 1000 -FRCLSVIVPLLVT-EDE-KTLVTCINCLTKLVGRLSQEE-LMA--QLPSFLPALFEAFGNQSA-DVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1000 -~~~l~~l~~~l~s-~~~-~~~~~al~~L~~lie~~~~~~-l~~--~L~~lip~l~~~l~D~~s-eVRkaAv~clv~i~~ 1072 (1113)
...++.|...+.. .++ ..+..|+..|+.+....+..+ ... .-...+|.|.+.+.+.+. +||++|..+|..+..
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 1356677777754 333 567778888888865433221 111 123457889999998875 999999998888763
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.99 E-value=0.00014 Score=79.77 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=112.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVL-EVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll-~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
++.|+..+.+.+ +..|..|+..|..+-... ..+..++..|. ..+.|.+..||..++..|..+....+
T Consensus 56 ~~~L~~~l~d~~---~~vR~~A~~aL~~l~~~~------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--- 123 (280)
T 1oyz_A 56 VRLAIEFCSDKN---YIRRDIGAFILGQIKICK------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP--- 123 (280)
T ss_dssp HHHHHHHHTCSS---HHHHHHHHHHHHHSCCCT------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---
Confidence 566676676554 578888888776542111 12344555555 35678899999999999988875322
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
.+...+++.++..+.|+...||..|..++..+. ....++.|...+.+.++..+..++..|+.+- . .
T Consensus 124 -~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~--------~ 189 (280)
T 1oyz_A 124 -IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININK-Y--------D 189 (280)
T ss_dssp -GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-C--------C
T ss_pred -cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-c--------C
Confidence 344567888888899999999998888876543 3457778888888888888887877776541 1 1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
-+.++|.+.+.+.|.+++||..|..+|..+
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 234567788888899999999888877544
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.97 E-value=0.005 Score=75.71 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=108.1
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE 566 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~ 566 (1113)
.+++. ++.++|-.+|+-|...+..+.+..+ ..+--++..|.+=|.|+|..+...||.+|+.+.. .
T Consensus 77 ~~vvk--l~~s~~~~~Krl~YL~l~~~~~~~~-------e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~ 141 (621)
T 2vgl_A 77 MEAVN--LLSSNRYTEKQIGYLFISVLVNSNS-------ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS------R 141 (621)
T ss_dssp HHHHH--GGGCSCHHHHHHHHHHHHHSCCCCH-------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC------H
T ss_pred HHHHH--HhcCCCHHHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC------H
Confidence 68888 7899999999999999999886643 1234567788899999999999999999998854 3
Q ss_pred HHHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHHhh----CCccchHHHHHHhhccCCCHHHHHHHHHHHHH
Q 001255 567 SYMERILPHVFSRL--IDPKELVRQPCSTTLDIVSKT----YSVDSLLPALLRSLDEQRSPKAKLAVIEFAIS 633 (1113)
Q Consensus 567 ~~l~~ll~~ll~kl--gD~K~~vr~~a~~~L~~i~e~----~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~ 633 (1113)
..+..++|.+.+.+ .|..+.||.+|.-|+-.+.+. ++.+..++.|.+.+. -++|-|+..++.-+.+
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC-CCCccHHHHHHHHHHH
Confidence 57889999999999 999999999999999888864 333456888888775 4789999988887655
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.90 E-value=0.00018 Score=78.83 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=118.2
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.++.|+..|.+.+ +..|..|+..|..+- . ...+..|.+.|.|.+..+|..|+..|..+...
T Consensus 24 ~i~~L~~~L~~~~---~~vr~~A~~~L~~~~---~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~----- 84 (280)
T 1oyz_A 24 NDDELFRLLDDHN---SLKRISSARVLQLRG---G--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC----- 84 (280)
T ss_dssp CHHHHHHHTTCSS---HHHHHHHHHHHHHHC---C--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----
T ss_pred hHHHHHHHHHcCC---HHHHHHHHHHHHccC---C--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----
Confidence 3788898887765 679999999887642 1 23456678888999999999999888765421
Q ss_pred hhHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcC--hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH
Q 001255 961 EDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 961 ~~~~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~--p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l 1037 (1113)
......+++.+.+ ...|....||..+..++..+....+ ...+++.|...+.+.++..+..++..|+.+-.
T Consensus 85 ~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------- 157 (280)
T 1oyz_A 85 KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157 (280)
T ss_dssp TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------
Confidence 1223334454442 4678889999999999998875432 34578888888888888888888877765431
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1038 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1038 ~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+..+|.|.+.+.|.++.||..|..+|..+
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 23568889999999999999999988654
No 56
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.83 E-value=0.0032 Score=81.55 Aligned_cols=150 Identities=9% Similarity=0.083 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 921 KYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D--~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
+.+..++..+...+.+ .+..+.+.++.+++.++..++..+.+|+..+++.++..+.... . ..+...+..++..++
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 687 LVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC-C--APTLEISKTAIVMFF 763 (971)
T ss_dssp HHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C-C--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHHhC
Confidence 3455555555555533 3567899999999999999998999999999999998887642 2 236677777777665
Q ss_pred hh-h----HHHHh-------hhhhccC-------ChhHHHHHHHHHHHHHHhhCHHHH-Hhh-hhhHHHHHHHHhcCCCH
Q 001255 999 PF-R----CLSVI-------VPLLVTE-------DEKTLVTCINCLTKLVGRLSQEEL-MAQ-LPSFLPALFEAFGNQSA 1057 (1113)
Q Consensus 999 p~-~----~l~~l-------~~~l~s~-------~~~~~~~al~~L~~lie~~~~~~l-~~~-L~~lip~l~~~l~D~~s 1057 (1113)
.+ . +...+ ...|... .......++.++..++...+...+ .+. ++.+++.+..++...+.
T Consensus 764 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~ 843 (971)
T 2x1g_F 764 KDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPES 843 (971)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCS
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCH
Confidence 42 1 11111 1112111 223456777888888877664333 245 78889999999998898
Q ss_pred HHHHHHHHHHHHHHHH
Q 001255 1058 DVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1058 eVRkaAv~clv~i~~~ 1073 (1113)
++-+++..++..+...
T Consensus 844 ~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 844 GAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999988876554
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.80 E-value=0.00043 Score=72.34 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-- 1000 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~-~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-- 1000 (1113)
.+.+..|+..|.|+|..++..+|.+|.+|.+.+..... .-++-+++.+++...++...|.=.|..|+++++...|+.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 44577788999999999999999999999998865554 458889999999999999999999999999999998764
Q ss_pred ---hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1001 ---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1001 ---~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
++..++...+.+++.....++.+.++.+ +. - ...+.++-.+..-+...+..|..+|..++..+-..-+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv--~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QP--L---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CB--S---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Cc--c---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 5777788888888887777788877776 11 0 1123444556666677888888888887777766544
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.76 E-value=0.0003 Score=73.24 Aligned_cols=147 Identities=17% Similarity=0.270 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh----
Q 001255 926 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---- 1000 (1113)
Q Consensus 926 ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~---- 1000 (1113)
....|...|.+.+..++..|+..|..|+..........++ ..++.|++.+.+....|+..|..++..++...+..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3445777788899999999999999998644333333322 57899999999999999999999998887542221
Q ss_pred ---hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1001 ---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1001 ---~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
.+++.|...+.+.+...+..|+..|..+... ..+..... -..++|.|++.+.+.+.+||..|..+|..++..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2678888888888888888888888887742 22222221 245789999999999999999999999988753
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.0032 Score=63.20 Aligned_cols=174 Identities=14% Similarity=0.292 Sum_probs=120.6
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+.++|. .+.|.-|..++-|+.-|..+++..+.... +-+.+|+-.+.+ +--.-.-|..-..++.++..-+
T Consensus 34 l~~lI~--~LDDDlwtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 34 LKKLIE--LLDDDLWTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHH--HTTCSCHHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHH--HhccHHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCH---
Confidence 356666 78999999999999999999998765322 233333333222 2222233444444555544432
Q ss_pred HHHHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHHhhCCc--cchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 001255 566 ESYMERILPHVFSRL--IDPKELVRQPCSTTLDIVSKTYSV--DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMN 641 (1113)
Q Consensus 566 ~~~l~~ll~~ll~kl--gD~K~~vr~~a~~~L~~i~e~~~~--~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~ 641 (1113)
..+.-++|.||... ||.| +|-...-+|.-|+.+.|- ..++..++..+. .+|---|..+|+|+. ++- .
T Consensus 103 -e~v~~vVp~lfanyrigd~k--ikIn~~yaLeeIaranP~l~~~v~rdi~smlt-skd~~Dkl~aLnFi~-alG---e- 173 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEK--TKINVSYALEEIAKANPMLMASIVRDFMSMLS-SKNREDKLTALNFIE-AMG---E- 173 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHH-TCC---T-
T ss_pred -HHHHhhHHHHHHHHhcCCcc--ceecHHHHHHHHHHhChHHHHHHHHHHHHHhc-CCChHHHHHHHHHHH-HHh---c-
Confidence 56777899999987 6766 888899999999988763 334455544443 688889999999985 231 1
Q ss_pred CCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhh
Q 001255 642 SEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 642 ~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
.+.-.+...+++++.++.|+|--||..|...|+-|-..
T Consensus 174 ----n~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 174 ----NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp ----TTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred ----cCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 12234566899999999999999999999999998753
No 60
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.70 E-value=0.078 Score=68.50 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHH-----hHHHH-HHHHHHhhcCc---chHHHHHHHHHHHHHHHhhCcchHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQ-----NFEKV-MKLFFQHLDDP---HHKVAQAALSTLADIIPSCRKPFES 567 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~-----~l~~l-~~~l~~~l~Ds---n~kV~~~~L~~l~~l~~~~~~~~~~ 567 (1113)
+.||+.|-.|+-.|..+...+......+.. ++..+ ...+...|.|+ |..|-..++.+|+.+..... ..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HH
Confidence 789999999999999997643110000001 45443 33456677888 88999999999999987652 46
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC----------c-------cchHHHHHHhhccCC-CH-H--HHHH
Q 001255 568 YMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS----------V-------DSLLPALLRSLDEQR-SP-K--AKLA 626 (1113)
Q Consensus 568 ~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~----------~-------~~~l~~l~~~~~~~k-np-k--vk~~ 626 (1113)
++..+++.++..|.|....||..|..||..+.+... . +.++..|+..+.... +| + ....
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 899999999999998877899999999999887421 1 223344443333211 12 2 2223
Q ss_pred HHHHHHHHHhhhccCCCCCCChhhHHHHHHhHcc----ccCC-CCHHHHHHHHHHHHHHHhhcChhHH
Q 001255 627 VIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTP----LVHD-KNTKLKEAAITCIISVYTHYDSTAV 689 (1113)
Q Consensus 627 ~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~d-~n~~VR~aA~~~L~~l~~~~~~~~~ 689 (1113)
+++-+...+..+ .+.+. ......+..+.. ++.+ .++.++.....+|+.|.+..++..+
T Consensus 573 l~~al~~vv~~~---~~~~~--p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~ 635 (960)
T 1wa5_C 573 LMRSIFRVLQTS---EDSIQ--PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL 635 (960)
T ss_dssp HHHHHHHHHHHH---TTTTG--GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred HHHHHHHHHHHH---HHhhh--hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH
Confidence 333333222211 11221 122223333332 2333 6788888889999988876444433
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.69 E-value=0.00097 Score=69.75 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=140.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+..+++.+.+.+ ...+..||..|.++++..+...-...+.++|+-+.+.+.++|-.|...|+++|..|+...+-.=
T Consensus 35 l~~L~~LL~dkD---~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~- 110 (265)
T 3b2a_A 35 LFLILELAGEDD---ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS- 110 (265)
T ss_dssp HHHHHHHTTSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-
T ss_pred HHHHHHHHhccc---hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-
Confidence 345556665554 4789999999999999865433334578888889999999999999999999999998655333
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC-hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~-p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
+.+.-++..+.+....+...++.-|.+.+..+ .... ..+++.++...+.|++-+.+.+++..++.+..+-+-.. +
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~---i 186 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG---H 186 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC---C
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH---H
Confidence 33445777777888888889999999999887 4444 56799999999999999999999999998886554222 2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
+..++..+..-+.+.|+.+++-|...+-.+.
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4455566677778899999999998776554
No 62
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.66 E-value=0.063 Score=67.24 Aligned_cols=443 Identities=13% Similarity=0.118 Sum_probs=252.2
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHH---HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCc
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE---KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK 563 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~---~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~ 563 (1113)
.+-|+. .....+-...+.|+..+..++..... ++..+- ..++.|+.++...|..+...+++++..+... +
T Consensus 249 ~~~~~~-~~~~~~~~~~~~a~~alt~i~~g~~~----~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~ 321 (810)
T 3now_A 249 DEYIKD-KLLAPDMESKVRVTVAITALLNGPLD----VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--K 321 (810)
T ss_dssp HHHHHH-HHSSCCHHHHHHHHHHHHHHHSSSHH----HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--H
T ss_pred HHHHHH-HhccCChHhHHHHHHHHHHHhcCCHH----HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--c
Confidence 344443 34556666788899999998876432 222222 4678889999888988888999999886544 2
Q ss_pred chHHHHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCC------------ccchHHHHHHhhccC-CCHHHHHHHHH
Q 001255 564 PFESYME-RILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS------------VDSLLPALLRSLDEQ-RSPKAKLAVIE 629 (1113)
Q Consensus 564 ~~~~~l~-~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~------------~~~~l~~l~~~~~~~-knpkvk~~~L~ 629 (1113)
..++++. .-+|.|..-+......+|..|..+|-.+..... .+.+++.+.+++... ..+.++..+++
T Consensus 322 ~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 322 DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3333332 223555555544446688888889988874321 123466677776654 35666655544
Q ss_pred HHHHHHhhhccCCCCCCChhh---HHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChh-------HHHHHHh-----
Q 001255 630 FAISSLNKHAMNSEGSGNLGI---LKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDST-------AVLNFIL----- 694 (1113)
Q Consensus 630 ~l~~~l~~~~~~~~~~~~~~~---~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~-------~~~~~l~----- 694 (1113)
-|.+ +.. +...... -.-+++.++.++...++.+...|...|.-|-..++.+ .+..+..
T Consensus 402 aLay-LS~------~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~ 474 (810)
T 3now_A 402 GLAY-LTL------DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPE 474 (810)
T ss_dssp HHHH-HTT------SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCC
T ss_pred HHHH-HhC------CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcc
Confidence 4432 221 0000011 1246778888887778889999999998886544211 0000000
Q ss_pred cCCHHHHHHHHHHHhh-hchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCC
Q 001255 695 SLSVEEQNSLRRALKQ-YTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGG 773 (1113)
Q Consensus 695 ~L~~~~~~~l~~al~~-~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1113)
.-+.+.-+...+-++. ...+.-..+...+++.. + .. +...
T Consensus 475 ~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s-----------------~--~v----qe~A---------------- 515 (810)
T 3now_A 475 EHELDDVDFINKRITVLANEGITTALCALAKTES-----------------H--NS----QELI---------------- 515 (810)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC-----------------H--HH----HHHH----------------
T ss_pred ccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC-----------------H--HH----HHHH----------------
Confidence 0111111112100111 01122223333332100 0 00 0000
Q ss_pred CCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCC
Q 001255 774 RKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHN 853 (1113)
Q Consensus 774 ~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~ 853 (1113)
-....|.... + .-|.. +.
T Consensus 516 -------------------------a~aL~NLA~d--------------~--------~~r~~-------Vv-------- 533 (810)
T 3now_A 516 -------------------------ARVLNAVCGL--------------K--------ELRGK-------VV-------- 533 (810)
T ss_dssp -------------------------HHHHHHHHTS--------------H--------HHHHH-------HH--------
T ss_pred -------------------------HHHHHHHcCC--------------H--------HHHHH-------HH--------
Confidence 0000000000 0 00000 00
Q ss_pred CCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchh-hHH-hHHHHHHHHH
Q 001255 854 NEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSI-WTK-YFNQILTAVL 931 (1113)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~-~~~-~f~~ll~~Ll 931 (1113)
+. ..++.|+..|.... .+.+..|...|.++....+... +.. .....++.|.
T Consensus 534 -----------------------~~-Gaip~Lv~LL~s~~---~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv 586 (810)
T 3now_A 534 -----------------------QE-GGVKALLRMALEGT---EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586 (810)
T ss_dssp -----------------------HT-THHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH
T ss_pred -----------------------HC-CCHHHHHHHHccCC---HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH
Confidence 00 12567777776654 4678899999999887655322 211 1123567777
Q ss_pred HHhcCC-CHHHHHHHHHHHHHHHHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC-------hhhH
Q 001255 932 EVLDDA-DSSVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD-------PFRC 1002 (1113)
Q Consensus 932 ~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~-------p~~~ 1002 (1113)
..|... +...+..||..|..|+..-...-...+ ...++.|++.+.+....|+++|..|+..++..-. -...
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~ 666 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCc
Confidence 777533 333455689999999875321111122 2468899998888889999999999988774311 1236
Q ss_pred HHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1003 LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1003 l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+++|..++.+.+..++..|.-.|..+... ........+ ...+|.|+.-+.+.+.+||+.|..|+..+..
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 78888888888888887777777777643 223333323 4688999999999999999999999987764
No 63
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.55 E-value=0.049 Score=70.25 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhhcChh------------hHHH
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDPF------------RCLS 1004 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D-s~~~Vr~aa~~~l~~l~~~~~p~------------~~l~ 1004 (1113)
+..+.+.++.++..++...+..+.+|+..+++.++..+.. ....+ ..++..++..+... .++.
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----l~l~~~li~~f~~~~~~~~~~~~~l~~~~~ 773 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASA----LDLTRQLVHIFAHEPAHFPPIEALFLLVTS 773 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHH----HHHHHHHHHHHTTCTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 5678999999999999999989999999999988887754 22333 33444444422111 1222
Q ss_pred Hhhhhhcc---CChhHHHHHHHHHHHHHHhhCHHHH-Hhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1005 VIVPLLVT---EDEKTLVTCINCLTKLVGRLSQEEL-MAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1005 ~l~~~l~s---~~~~~~~~al~~L~~lie~~~~~~l-~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.+.+++.. .....+..+++++..+++.++...+ .+. +..+++.+..++.+.+.+|-+++..++..+....+
T Consensus 774 ~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 774 VTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 22333321 2234566788999999988775544 233 78889999999999999999999999988775543
No 64
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.54 E-value=0.002 Score=77.35 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=126.2
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
.++++++.+...+ .+.+..|...+++++.......++.-. ..+++.|.+.|... ++.++..|+.+|..|+.....
T Consensus 58 ~i~~~v~~l~s~d---~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 58 SVEDIVKGINSNN---LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CHHHHHHHHTSSC---HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4899999987665 478999999999988543322222211 12567788888654 577999999999999864333
Q ss_pred hhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChh-----HHHHHHHHH
Q 001255 959 VMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEK-----TLVTCINCL 1025 (1113)
Q Consensus 959 ~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~-----~~~~al~~L 1025 (1113)
.....++ ..+|.|+..+.++...|++.|..||..|+...+.. .+++.|...+...+.. ....+...|
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 2222233 37899999999999999999999999988653322 2466667777654332 122233334
Q ss_pred HHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1026 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1026 ~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..+...-....-......++|.|.+.+.+.+.+|+..|..||..+.
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4443221111111234667899999999999999999999887665
No 65
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.53 E-value=0.0016 Score=84.41 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=129.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHH
Q 001255 896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-----DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEK 970 (1113)
Q Consensus 896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-----D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ 970 (1113)
.|..|.+++-.++.+...-......+.+..++..|+..+. |.+..|+..++.+|+...+-.... ..|++.+|..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence 3999999999998877443333344567777887777765 344457777889988877765432 3579999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHhhcChhh----------HHHHh----hhhhccCChhHHHHHHHHHHHHHHhhCHHH
Q 001255 971 LLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR----------CLSVI----VPLLVTEDEKTLVTCINCLTKLVGRLSQEE 1036 (1113)
Q Consensus 971 ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~----------~l~~l----~~~l~s~~~~~~~~al~~L~~lie~~~~~~ 1036 (1113)
|++.+.|+++.|..+|-.++..+++.|...- .++.+ ...+..-+.......++.++.+++..+.+.
T Consensus 545 L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 9999999999999999999999998876421 12222 222222244555677899999999888544
Q ss_pred -HHhhhhhHHHHHHHHhcC--------C----CHHHHH---HHHHHHHHHHHHhhhhhHhhhhcCChhhHhh
Q 001255 1037 -LMAQLPSFLPALFEAFGN--------Q----SADVRK---TVVFCLVDIYIMLGKAFLPYLERLNSTQLRL 1092 (1113)
Q Consensus 1037 -l~~~L~~lip~l~~~l~D--------~----~seVRk---aAv~clv~i~~~lGe~i~p~l~~L~~s~~kL 1092 (1113)
....+..+++.+...++. . +.+.-+ .-..|++.++..+|..+.|++..+-+.-.++
T Consensus 625 ~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 625 ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1023)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 333444445444433321 1 112222 2356788888889988888876554333333
No 66
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.49 E-value=0.11 Score=67.85 Aligned_cols=164 Identities=9% Similarity=0.150 Sum_probs=110.8
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc------hhhhhhHHHHHHHHHHHHhCCC----------h-----
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ------KDVMEDSVEIVIEKLLHVTKDA----------V----- 979 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~------~~~~~~~~~~~l~~ll~~~~Ds----------~----- 979 (1113)
+++..++..++......+..++..++.++..++... ...+.+++..+++.++..+.-+ .
T Consensus 340 ~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence 457777888888777778889999999999888732 2346677888888888765311 0
Q ss_pred -------HHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc------cCChhHHHHHHHHHHHHHHhh--------------
Q 001255 980 -------PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV------TEDEKTLVTCINCLTKLVGRL-------------- 1032 (1113)
Q Consensus 980 -------~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~------s~~~~~~~~al~~L~~lie~~-------------- 1032 (1113)
-..+.++.++++.++.. .+..+++++.+.+. ..+|+.+-+++-.++.+.+..
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 04467888899988744 56667777766653 235655444433333221100
Q ss_pred -----C--------HHH--------H----------HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhH--
Q 001255 1033 -----S--------QEE--------L----------MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL-- 1079 (1113)
Q Consensus 1033 -----~--------~~~--------l----------~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~-- 1079 (1113)
+ ... + ...|+.+++.+..+++|.++.||.+|..++..++...++.+.
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~ 578 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ 578 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSC
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 000 0 124788889999999999999999999999999998877664
Q ss_pred ------hhhhcC
Q 001255 1080 ------PYLERL 1085 (1113)
Q Consensus 1080 ------p~l~~L 1085 (1113)
||++.|
T Consensus 579 ~~~~~~p~~~~i 590 (1049)
T 3m1i_C 579 QPRESEPFIQTI 590 (1049)
T ss_dssp CTTCSSCHHHHH
T ss_pred cCCCCCcHHHHH
Confidence 777643
No 67
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.36 E-value=0.0059 Score=67.76 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=129.0
Q ss_pred hHHHHH-HhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchh
Q 001255 882 IPQILH-LMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLD-DADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 882 i~~lL~-~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
++.++. .|...+ ...|..|+..|..+...+..... ..+ ...+..|+..|. +.+..+++.|+..|..|+.....
T Consensus 83 l~~Lv~~lL~s~~---~~vr~~Aa~~Lg~ia~~n~~~~~-~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 83 MHLLVGRYLEAGA---AGLRWRAAQLIGTCSQNVAAIQE-QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp HHHHHHTTTTCSS---HHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCCHHHHH-HHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 566777 665443 57899999999888765432110 011 134666777776 45788999999999999986665
Q ss_pred hhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhccCChhHHHHHHHHHHHHH
Q 001255 959 VMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1029 (1113)
Q Consensus 959 ~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s~~~~~~~~al~~L~~li 1029 (1113)
....+.. ..++.|+..+.+....|+..|-.++..++.. .++ -+++.|...|.+.+...+..|+..|..++
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 5555543 5788899989888899999999999988876 332 37888888898888888888899999888
Q ss_pred HhhCHHH---HH---hhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Q 001255 1030 GRLSQEE---LM---AQLPSFLPALFEAFGNQ--SADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1030 e~~~~~~---l~---~~L~~lip~l~~~l~D~--~seVRkaAv~clv~i~ 1071 (1113)
.. .+.. +. ..+..++....+.+... ..++.+.|..++-.+|
T Consensus 238 ~~-~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 238 TD-FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp TT-CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred hC-ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 65 3322 11 12455555556666633 4688888777765554
No 68
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.35 E-value=0.0037 Score=75.27 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=128.8
Q ss_pred hHHHHHHhhcCCCC--ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDG--SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~--~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
++.|+..|...+.. .......+...|..+...............++..|...|.+.+..++..|+..|..|+......
T Consensus 206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~ 285 (529)
T 3tpo_A 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285 (529)
T ss_dssp HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 56667666554321 0122334555555555443322212345678888999999999999999999999998754333
Q ss_pred hhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 960 MEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 960 ~~~~-~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
.... -..+++.|++.+.+....|+..+..++..++...+.. .+++.|..++.+.+...+..|.-.|..+...
T Consensus 286 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 2222 2247888999999999999999999998887543221 2566677777777777777777777777632
Q ss_pred hCHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1032 LSQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1032 ~~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
..+..... -..++|.++..+.+.+.+||+.|..+|..+..
T Consensus 366 -~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 366 -RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 22322221 23578999999999999999999999987764
No 69
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.28 E-value=0.0071 Score=79.06 Aligned_cols=188 Identities=12% Similarity=0.119 Sum_probs=123.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHH
Q 001255 896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-----DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEK 970 (1113)
Q Consensus 896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-----D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ 970 (1113)
.|..+.+++..+..+...-....-...+..++..|..... |..+.++..++.++..+.+..... ..|+..+++.
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ 544 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILK 544 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 3999999999988655322221112235666666665432 223345556888888777654432 3689999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHhhcChhhHH--------HHhhhhhc-------cCChhHHHHHHHHHHHHHHhhC-H
Q 001255 971 LLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCL--------SVIVPLLV-------TEDEKTLVTCINCLTKLVGRLS-Q 1034 (1113)
Q Consensus 971 ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l--------~~l~~~l~-------s~~~~~~~~al~~L~~lie~~~-~ 1034 (1113)
+++.+.|+.+.|+..|-.++..+++.++.. ++ |++.++++ .-+.......++.++.++...+ .
T Consensus 545 ll~~l~~~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~ 623 (1049)
T 3m1i_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1049)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999987643 22 33333332 2233445566788999998877 3
Q ss_pred HHHHhhhhhHHHHHHHHhc-----------C-CCHHHHHH---HHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1035 EELMAQLPSFLPALFEAFG-----------N-QSADVRKT---VVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1035 ~~l~~~L~~lip~l~~~l~-----------D-~~seVRka---Av~clv~i~~~lGe~i~p~l~~L 1085 (1113)
+...+.+..+++.+...+. + .+.+..+. ...|+..++..+|+.+.|++..+
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i 689 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555667777666654432 1 13333333 25688889999999888887654
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.025 Score=56.87 Aligned_cols=173 Identities=14% Similarity=0.224 Sum_probs=111.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--hh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--~~ 959 (1113)
++++++.|.|. .|..++.|+.-|..++++-. +. +..++..|+..+..+... -+-+++++..| ..
T Consensus 34 l~~lI~~LDDD---lwtV~kNAl~vi~~i~~~~~-el----~epl~~kL~vm~~ksEaI------pltqeIa~a~G~la~ 99 (253)
T 2db0_A 34 LKKLIELLDDD---LWTVVKNAISIIMVIAKTRE-DL----YEPMLKKLFSLLKKSEAI------PLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCG-GG----HHHHHHHHHHHHHHCCSH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccH---HHHHHHhHHHHHHHHHHHhH-HH----HHHHHHHHHHHHhhcccC------chHHHHHHHHhHHHH
Confidence 45666666544 48999999988777765532 22 344455555555444332 22234444444 23
Q ss_pred hhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHH
Q 001255 960 MEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 1036 (1113)
Q Consensus 960 ~~~~-~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~ 1036 (1113)
..+. +..++|.++.-+.-..+.++=-.--++..|+...|-. -++.-+..++.+++.-.+..++.+++.+-+.. ..-
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~y 178 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FKY 178 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHH
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-ccc
Confidence 4443 6778888998775445677777777888888774432 24555566667888777888887665544322 233
Q ss_pred HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1037 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1037 l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
+ ..++|-+..-++|.+--||..||.+|+.+...
T Consensus 179 v----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 179 V----NPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp H----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred c----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 3 33447888999999999999999999877643
No 71
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.013 Score=72.22 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=128.0
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.++.|+..|.+.+ +..|..|+..|..+..........-....++..|...|.+. +..++..|+.+|..|+......
T Consensus 15 ~i~~Lv~lL~~~~---~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 15 AIPELTKLLNDED---QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp THHHHHHHHTCSC---HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHHcCCC---HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 3677888777544 57999999999988876543211111235677788888765 7889999999999887653322
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 960 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
..-+-...++.|++.+.+....|+..|..++..++...+. ..+++.|...+.+.+++....++..|..+....
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 1112235889999999998899999999999999876432 236888888898887777777777777776321
Q ss_pred CH--HHHHhhhhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Q 001255 1033 SQ--EELMAQLPSFLPALFEAFGNQS-ADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1033 ~~--~~l~~~L~~lip~l~~~l~D~~-seVRkaAv~clv~i~ 1071 (1113)
+. ..+. -...+|.+++.+.+.+ ..++.++..++..+.
T Consensus 172 ~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 172 QESKLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHH--HcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 11 1111 1245677888887654 456677777766553
No 72
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.03 E-value=0.013 Score=69.70 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF--NQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f--~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
++.|+..|.+.+ +..|..|+..|..+....... ...+ ...+..|.+.|.+ .+..++..|+..|..|+.....
T Consensus 19 i~~Lv~lL~~~~---~~v~~~A~~~L~~l~~~~~~~--~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 19 IPELTKLLNDED---QVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp HHHHHHHHTCSC---HHHHHHHHHHHHHHHTSHHHH--HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhCCCC---HHHHHHHHHHHHHHHcCCccH--HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 677777776544 578999999998887543211 1112 2456777777754 4788999999999998764322
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHH
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLT 1026 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~ 1026 (1113)
...-.-...+|.|++.+.+..+.|+..|..++..++...+. ..+++.|...+.+.++..+..+...|.
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11112235889999999988899999999999988876432 236788888887776665554444443
No 73
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=96.92 E-value=0.015 Score=57.56 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+.+.||. +...|-.+|..... .-.+.+.+|.++|...|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 13 ~l~~~dw~----~~leicD~I~~~~~-------~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 13 SMSEQDWS----AIQNFCEQVNTDPN-------GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp TCSSCCHH----HHHHHHHHHHHSSH-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred CCCCcCHH----HHHHHHHHHHcCCc-------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 45678885 45566666666431 3456788999999999999999999999999999999996554 45
Q ss_pred HHHHHHHHhcC------CchhhHHHHHHHHHHHHhhCCccchHHHHHHhh
Q 001255 572 ILPHVFSRLID------PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 615 (1113)
Q Consensus 572 ll~~ll~klgD------~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~ 615 (1113)
++..|...+.+ ....||+++.+.+..|.+.|+.+..+..+++.|
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~L 131 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQML 131 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 55555544432 356799999999999999998765555554444
No 74
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.87 E-value=0.012 Score=75.88 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=136.6
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+..++..+..-.+..+..|..++.-|..+..--.. . .+++..++..|+..|.| +.|+..|+..|..|++..+..+.
T Consensus 488 l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 488 VPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-H-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp HHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-C-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-C-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554333211246788888877765421100 0 14677778888888865 77999999999999998888899
Q ss_pred hHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhh-------c----cC-Ch---hHHHHHHHH
Q 001255 962 DSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL-------V----TE-DE---KTLVTCINC 1024 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l-------~----s~-~~---~~~~~al~~ 1024 (1113)
+|++.++..+...+. +-....+..+-+|+..++...+++...+++..++ . .. +. .....++++
T Consensus 564 p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 643 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGL 643 (963)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999988776 3456889999999999988776444444332222 1 11 11 223356777
Q ss_pred HHHHHHhhCH---------------------HHHHhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhhHhh
Q 001255 1025 LTKLVGRLSQ---------------------EELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDIYIMLGKAFLPY 1081 (1113)
Q Consensus 1025 L~~lie~~~~---------------------~~l~~~L~~lip~l~~~l~--D~~seVRkaAv~clv~i~~~lGe~i~p~ 1081 (1113)
|+.++..++. +.+......++|.+.+.+. ..+++|...+..++..+...+|+++.||
T Consensus 644 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~ 723 (963)
T 2x19_B 644 LSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPM 723 (963)
T ss_dssp HHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGG
T ss_pred HHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccccc
Confidence 7777766542 2244456667777666553 3577999999999999999999888888
Q ss_pred hhcC
Q 001255 1082 LERL 1085 (1113)
Q Consensus 1082 l~~L 1085 (1113)
++.+
T Consensus 724 l~~~ 727 (963)
T 2x19_B 724 VPQL 727 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.62 E-value=0.00023 Score=68.90 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHh
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1006 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l 1006 (1113)
+..|...|.|.+..+|..|+..|..+ +.. -++.|++.+.|+...||..|..++..+ +....++.|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~----~~~~a~~~L 78 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRM----GDE-------AFEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPL 78 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSC----SST-------THHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh----Cch-------HHHHHHHHHcCCCHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 34477788888998998887766543 211 147788888999999999888876543 334578888
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1007 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1007 ~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
...+.+.++..+..++..|+.+- . +..+|.|.+.+.|.+..||.+|..+|.
T Consensus 79 ~~~L~d~~~~VR~~A~~aL~~~~----~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 79 IKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHhC----c-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888777642 1 345678888899999999999998874
No 76
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=96.52 E-value=0.034 Score=54.92 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+.+.||. +...|-.+|..... .-.+.+.+|.++|...|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 23 ~l~~~dw~----~ileicD~I~~~~~-------~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 23 LNKELDWA----SINGFCEQLNEDFE-------GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp TCSSCCHH----HHHHHHHHGGGSSS-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred CCCCcCHH----HHHHHHHHHHCCCC-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 45677886 56666666766542 2346788999999999999999999999999999999885332 23
Q ss_pred HHHHHHHHhcC------CchhhHHHHHHHHHHHHhhCCccchHHHHHHhhc
Q 001255 572 ILPHVFSRLID------PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLD 616 (1113)
Q Consensus 572 ll~~ll~klgD------~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~ 616 (1113)
++..|++.+.+ ....||+++.+.+..|.+.|+.+..+..++..|.
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLK 142 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44444444432 3567999999999999999988776666665553
No 77
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=96.51 E-value=0.032 Score=56.45 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=80.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+.+.||. ....|-.+|..... .-.+.+.+|.++|...|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 25 ~l~~~Dw~----~ileicD~I~~~~~-------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 25 SNRQEDWE----YIIGFCDQINKELE-------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp TCSSCCHH----HHHHHHHHHHHSTT-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred CCCCcCHH----HHHHHHHHHHcCCc-------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 34678885 45666677766432 3456788999999999999999999999999999999886433 22
Q ss_pred HHHHHHHHhc------CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhh
Q 001255 572 ILPHVFSRLI------DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 615 (1113)
Q Consensus 572 ll~~ll~klg------D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~ 615 (1113)
+|..|...+. .....||+++.+.+..|.+.|+.+..+..+++.|
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~L 143 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHML 143 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3444444332 2346799999999999999998765444444433
No 78
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.42 E-value=0.05 Score=70.49 Aligned_cols=196 Identities=10% Similarity=0.137 Sum_probs=121.7
Q ss_pred hcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC---C-H-HHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 890 CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA---D-S-SVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 890 ~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~---n-~-~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
...+| +|..+.+++-.++.+...-....-...+-.++..|+.....+ + . .++...+-+++...+..... -.|+
T Consensus 487 ~~~~~-sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L 564 (1073)
T 3gjx_A 487 NGTEW-SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFL 564 (1073)
T ss_dssp TSCCC-CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH
T ss_pred cCCCC-CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHH
Confidence 33355 499999999998877532222122345777777777666433 1 2 24554556776665554433 3589
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh-------HHHHhhhhhcc------C-ChhHHHHHHHHHHHHHH
Q 001255 965 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVT------E-DEKTLVTCINCLTKLVG 1030 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~-------~l~~l~~~l~s------~-~~~~~~~al~~L~~lie 1030 (1113)
+.++.+|++.+.|+++.|.++|-.|+..++..|...- ..|++.++++. + .......-.+.++.++.
T Consensus 565 ~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 565 KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998886531 12344444431 2 23334455688889998
Q ss_pred hhCHHH-HHhhhhhHHHHHHHHhcC------------CCHH-HHH--HHHHHHHHHHHHhhhhhHhhhhcCCh
Q 001255 1031 RLSQEE-LMAQLPSFLPALFEAFGN------------QSAD-VRK--TVVFCLVDIYIMLGKAFLPYLERLNS 1087 (1113)
Q Consensus 1031 ~~~~~~-l~~~L~~lip~l~~~l~D------------~~se-VRk--aAv~clv~i~~~lGe~i~p~l~~L~~ 1087 (1113)
..|.+. ....+..+||.....++. .+++ ++. .-..|.+.++..+|..+.|+++.+-+
T Consensus 645 ~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 645 AQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 717 (1073)
T ss_dssp TCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH
Confidence 888644 233444444444433221 1233 232 22347777888888777777765533
No 79
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=96.40 E-value=0.031 Score=54.67 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=77.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+.+.||. +...|-.+|..... .-.+.+.+|.++|+..|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 17 ~l~~~dw~----~ileicD~I~~~~~-------~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~ 85 (140)
T 3ldz_A 17 MNTAEDWG----LILDICDKVGQSRT-------GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRD 85 (140)
T ss_dssp TSSSCCHH----HHHHHHHHHTTSTT-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHH
T ss_pred CCCCcCHH----HHHHHHHHHHCCCc-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 45778886 55566666766432 3357788999999999999999999999999999999886333 22
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 572 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 572 ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
++..|...+......|++++.+.+..|.+.|..+..+..
T Consensus 86 Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 124 (140)
T 3ldz_A 86 FASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSL 124 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchH
Confidence 333322222223456999999999999999988765443
No 80
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.39 E-value=0.011 Score=68.98 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=117.6
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch-----hhHH-hHHHHHH-HHHHHhcC--CCHH---HHHHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHS-----IWTK-YFNQILT-AVLEVLDD--ADSS---VREVALSLI 949 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~-----~~~~-~f~~ll~-~Ll~~L~D--~n~~---vr~~aL~~L 949 (1113)
...|+..|-+.. |+.|..|.-.|+++++..+.. .... ..-+++- ..+++++| ++.. |||.|..+|
T Consensus 176 cE~L~~DLFdp~---WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 176 FEQISDNLLSYE---WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp THHHHHHTTCSS---HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 466777776665 899999999999999876421 1111 1122222 23556666 3322 999999999
Q ss_pred HHHHHhchhh---------------hh-------------hH---HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 950 NEMLKNQKDV---------------ME-------------DS---VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 950 ~~L~~~~~~~---------------~~-------------~~---~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
..+ ..++.. |+ .+ +..+++.++..++|..+.||..|.+++.-++..-.
T Consensus 253 GaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~ 331 (800)
T 3oc3_A 253 SRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDS 331 (800)
T ss_dssp HHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSST
T ss_pred HHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhh
Confidence 887 655421 11 11 46677888888899999999998888876662112
Q ss_pred hhhHHHHhhhhhcc--CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 999 PFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 999 p~~~l~~l~~~l~s--~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
...++.++-..|.. +-.......+++|..|.. ++.. ....+.++|-|.-.+.|+-++||+++.+|+..+.
T Consensus 332 l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s-~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 332 LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR-ENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH-HCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc-CCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 23355555444432 112223333577777774 3322 1223578899999999999999999999997765
No 81
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.38 E-value=3.2 Score=51.36 Aligned_cols=131 Identities=9% Similarity=0.178 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhch---hhhhh-HHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--hh-----------H
Q 001255 942 REVALSLINEMLKNQK---DVMED-SVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FR-----------C 1002 (1113)
Q Consensus 942 r~~aL~~L~~L~~~~~---~~~~~-~~~--~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--~~-----------~ 1002 (1113)
+..||..|..|+..-. ..... -+. ..++.|.+.+.+.+..|+++|-+++-.++..-.. .+ -
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r 655 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN 655 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence 4468899999988542 12222 232 4789999999988899999999999888853211 11 2
Q ss_pred HHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Q 001255 1003 LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL--PSFLPALFEAFGN--QSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1003 l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D--~~seVRkaAv~clv~i~~~ 1073 (1113)
|++|..++.+.+..++..|.-.|..+....+ ..+...+ ...++.+..-+.+ .+.++|..++.|+-.+...
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 6777788888888888776655555532222 2222222 3466777777787 8999999999998888753
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.37 E-value=0.0096 Score=69.37 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh------hhhH--HHHHHHHHHHHhCC-----ChHHHHHHHHHHHHH
Q 001255 926 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDV------MEDS--VEIVIEKLLHVTKD-----AVPKVSNEAEHCLTV 992 (1113)
Q Consensus 926 ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~------~~~~--~~~~l~~ll~~~~D-----s~~~Vr~aa~~~l~~ 992 (1113)
+...|..-|.|.+-.+|-.|.-.|++|++..|.. .... ...+---.++.+|| ....||+.|.+++.+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5556777778999999999999999999987632 2222 22233333466775 457899999999999
Q ss_pred HHhhcChh-hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 993 VLSQYDPF-RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 993 l~~~~~p~-~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
+ .+.+.+ .++..+...+....|..+.+++=-|..+ .+.+.. ++.++|.+..++.|.+-|||..|-.+|.-+.
T Consensus 255 L-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 255 I-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp H-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred H-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 9 777765 2333333444677899998877555555 233322 8889999999999999999999999987663
No 83
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=96.30 E-value=0.031 Score=55.82 Aligned_cols=104 Identities=11% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhCcchHHHHH--
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYME-- 570 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~-- 570 (1113)
.+.+.||.- ...|-.+|..... .-.+.+.+|.++|+ ..|.+|+..+|.+|..++..||..|+..+-
T Consensus 28 ~l~~~Dw~~----~leicD~I~~~~~-------~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 28 SLQSEDWAL----NMEICDIINETEE-------GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp TCSSCCHHH----HHHHHHHHHHSSS-------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred CCCCcCHHH----HHHHHHHHhCCCc-------cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 456778875 4445556655432 34577889999997 689999999999999999999999965332
Q ss_pred HHHHH-HHHHh---cCCchhhHHHHHHHHHHHHhhCCccchH
Q 001255 571 RILPH-VFSRL---IDPKELVRQPCSTTLDIVSKTYSVDSLL 608 (1113)
Q Consensus 571 ~ll~~-ll~kl---gD~K~~vr~~a~~~L~~i~e~~~~~~~l 608 (1113)
.++.. |+..+ .+....||+++.+.+..|.+.|..+..+
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l 138 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDL 138 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcch
Confidence 24443 22323 3444579999999999999999765433
No 84
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=96.24 E-value=0.046 Score=54.91 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH------H
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE------S 567 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~------~ 567 (1113)
.+.+.||.- ...|-.+|..... .-.+.+.+|.++|+..|.+|+..+|.+|..++..||..|+ .
T Consensus 27 ~~~~~Dw~~----~leicD~I~~~~~-------~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 27 YNTTEDWSL----IMDICDKVGSTPN-------GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp TCSSCCHHH----HHHHHHHHHHSSS-------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred CCCCcCHHH----HHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 356788874 4455566665432 3456788999999999999999999999999999999886 3
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHH
Q 001255 568 YMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLP 609 (1113)
Q Consensus 568 ~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~ 609 (1113)
++..++ .|+.+- ....|++++.+.+..|.+.|..+..+.
T Consensus 96 Fl~el~-~l~~~~--~~~~Vk~kil~li~~W~~~f~~~~~l~ 134 (163)
T 1x5b_A 96 FATEVR-AVIKNK--AHPKVCEKLKSLMVEWSEEFQKDPQFS 134 (163)
T ss_dssp HHHHHH-HHHHTT--CCHHHHHHHHHHHHHHHHHTTTCSTTH
T ss_pred HHHHHH-HHHccC--CCHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 443332 233322 335699999999999999998765443
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.11 E-value=0.081 Score=60.13 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=123.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc---hhhHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhc-
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH---SIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQ- 956 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~---~~~~~~f~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~- 956 (1113)
|+.|+..|...+ .+.+..|...|..+....+. ..+.+ . ..+..|.+.| ...+..+++.|+.+|..|+...
T Consensus 129 Ip~LV~LL~s~~---~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 129 MRALVAQLKSES---EDLQQVIASVLRNLSWRADVNSKKTLRE-V-GSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHGGGCSC---HHHHHHHHHHHHHHHTTCCHHHHHHHHH-T-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHhccCCHHHHHHHHH-C-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 677888887544 46888888888877653221 11111 1 2345566653 4557789999999999998732
Q ss_pred hhhhhhH-HHHHHHHHHHHhCCChH----HHHHHHHHHHHHHHhh--cChh--------hHHHHhhhhhccCChhHHHHH
Q 001255 957 KDVMEDS-VEIVIEKLLHVTKDAVP----KVSNEAEHCLTVVLSQ--YDPF--------RCLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 957 ~~~~~~~-~~~~l~~ll~~~~Ds~~----~Vr~aa~~~l~~l~~~--~~p~--------~~l~~l~~~l~s~~~~~~~~a 1021 (1113)
..+..-. ....||.|++.+.+..+ .|++.|..++..+..+ ..++ -+++.|...|.+.+......|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2221111 23578888888875543 5888888889888752 1222 267888888888777777777
Q ss_pred HHHHHHHHHhhCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1022 INCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1022 l~~L~~lie~~~~~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
.-.|..+... ..+.....+ ..++|.|.+.+.+.+..+|+.|..+|..+...
T Consensus 284 ~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 284 CGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 7777777622 222221111 34679999999999999999999988887754
No 86
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.05 E-value=3.7 Score=54.19 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=59.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCch-hHHHHhHH-HHHHHHHHhhc---CcchHHHHHHHHHHHHHHHhhCcchHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGI-QEVIQNFE-KVMKLFFQHLD---DPHHKVAQAALSTLADIIPSCRKPFESYME 570 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~-~~v~~~l~-~l~~~l~~~l~---Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~ 570 (1113)
.+.+=..|.-|+..|++.|+..=..+ .+.+..++ .+++.+..... +....|-...-.++..|+....+ +.| .
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p--~~W-p 133 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP--QHW-P 133 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST--TTC-T
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc--ccc-h
Confidence 45566789999999999987631111 11112232 23333333211 13466777777788888877432 345 4
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 001255 571 RILPHVFSRLIDPKELVRQPCSTTLDIVSK 600 (1113)
Q Consensus 571 ~ll~~ll~klgD~K~~vr~~a~~~L~~i~e 600 (1113)
.+++.|+..+.. .+..+..+..+|..+.|
T Consensus 134 ~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 134 DMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp THHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 667777776643 23456777788887775
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.01 E-value=0.2 Score=58.78 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=122.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhH--HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhc-h
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF--NQILTAVLEVL-DDADSSVREVALSLINEMLKNQ-K 957 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f--~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~-~ 957 (1113)
|+.|+..|...+ .+.+..|...|..+....+...- ..+ ...+..|.+.| ...+..+++.|+.+|..|+... .
T Consensus 245 Ip~LV~LL~s~~---~~v~~~A~~aL~nLs~~~~~~~k-~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 245 MRALVAQLKSES---EDLQQVIASVLRNLSWRADVNSK-KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHGGGCSC---HHHHHHHHHHHHHHTSSCCHHHH-HHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHHhcCCCHHHH-HHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 677888887544 46788888888776542121110 111 12355666654 4457789999999999998732 2
Q ss_pred hhhhhH--HHHHHHHHHHHhCCChH----HHHHHHHHHHHHHHhh--cChh--------hHHHHhhhhhccCChhHHHHH
Q 001255 958 DVMEDS--VEIVIEKLLHVTKDAVP----KVSNEAEHCLTVVLSQ--YDPF--------RCLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 958 ~~~~~~--~~~~l~~ll~~~~Ds~~----~Vr~aa~~~l~~l~~~--~~p~--------~~l~~l~~~l~s~~~~~~~~a 1021 (1113)
.+. .. ....||.|++.+.+..+ .|++.|..+|..+..+ ..++ -+++.|...|.+.+......|
T Consensus 321 nk~-~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A 399 (458)
T 3nmz_A 321 NKA-DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 399 (458)
T ss_dssp HHH-HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHH
T ss_pred HHH-HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHH
Confidence 211 12 13578888888875544 4888888889888752 2332 257788888888777777778
Q ss_pred HHHHHHHHHhhCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1022 INCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1022 l~~L~~lie~~~~~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.-.|..+... ..+.....+ ..++|.|...+...+..||+.|..+|..+..
T Consensus 400 ~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 400 CGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8777777632 222222111 3467999999999999999999998887764
No 88
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.81 E-value=1.3 Score=47.56 Aligned_cols=138 Identities=13% Similarity=0.193 Sum_probs=102.1
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.+.++|++-..+.+ +++.+.|.++++++-..+.. .|.++++.++....|.+..+|.....+|.+.+...
T Consensus 16 ~v~~lln~A~~~~~---~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---- 84 (257)
T 3gs3_A 16 KVVDWCNELVIASP---STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---- 84 (257)
T ss_dssp HHHHHHHHHTTCCH---HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhhhcCc---HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----
Confidence 46788888766552 69999999999987776654 46667777777778889999999999999999542
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh-------cCh-----hh-------HHHHhhhhhccCChhHHHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-------YDP-----FR-------CLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~-------~~p-----~~-------~l~~l~~~l~s~~~~~~~~a 1021 (1113)
..++..+++.|...+.|....|.+.+..|+..+-.. .+. +. +-..+...+.+.+..+++.|
T Consensus 85 ~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~ 164 (257)
T 3gs3_A 85 VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNA 164 (257)
T ss_dssp GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHH
Confidence 246777788888888888888888888877654422 121 22 33334455567788899999
Q ss_pred HHHHHHHH
Q 001255 1022 INCLTKLV 1029 (1113)
Q Consensus 1022 l~~L~~li 1029 (1113)
+|++..+|
T Consensus 165 iKF~e~vI 172 (257)
T 3gs3_A 165 IKFLEGVV 172 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
No 89
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.71 E-value=0.17 Score=53.45 Aligned_cols=180 Identities=14% Similarity=0.043 Sum_probs=124.2
Q ss_pred ChHHHHHHhhcC-CCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNG-NDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~-~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
+|.++++++..- +-| ++-.++...+. .... ..+++........|..-.||..|+.+|..+ .
T Consensus 38 ~~~~~~~~~~~~~~gf--~~~~~~a~~~~---~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----- 99 (240)
T 3l9t_A 38 YVARLEKDFSLIEHGF--KEEEQRALTDY---KSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----- 99 (240)
T ss_dssp HHHHHHHHHTC-------CHHHHHHHHHH---HHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----
T ss_pred HHHHHHHHHHHhhccc--HHHHHHHHHHH---HhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----
Confidence 467777777653 322 33333333322 2222 344444455555566667999998876665 2
Q ss_pred hhhHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 960 MEDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
....+|+.+.. ...|..=-|++.+..++..++...+|+.+++++..+..+.+.-.+..|++.+.-.... +. ..
T Consensus 100 ---~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~--~k 173 (240)
T 3l9t_A 100 ---KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY--FK 173 (240)
T ss_dssp ---TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT--TT
T ss_pred ---CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch--hh
Confidence 12345666655 5678888999999999999998778888999999999999888888888765321111 11 12
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhc
Q 001255 1039 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1084 (1113)
Q Consensus 1039 ~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~ 1084 (1113)
.....++|.|....+|.+--|||+.-+.|-.+-+.-++.+..++..
T Consensus 174 ~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 174 ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 2345577889999999999999999999999999999988888875
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.63 E-value=0.39 Score=54.49 Aligned_cols=174 Identities=10% Similarity=0.054 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHhcCCchhhH-HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH-H-HHHHHHHHHH
Q 001255 898 TSKHGALQQLIKASVANDHSIWT-KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-V-EIVIEKLLHV 974 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~-~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~-~-~~~l~~ll~~ 974 (1113)
..+..|...|..+.......... ...+.++..|...|...+..+++.|+..|..|+..-....... . ...+|.|++.
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~l 178 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHH
Confidence 45778888888776544311111 1134567888889988889999999999999986311112222 1 2468888886
Q ss_pred h-CCChHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhhhhccCCh----hHHHHHHHHHHHHHHh--hCHHHHHh
Q 001255 975 T-KDAVPKVSNEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDE----KTLVTCINCLTKLVGR--LSQEELMA 1039 (1113)
Q Consensus 975 ~-~Ds~~~Vr~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~s~~~----~~~~~al~~L~~lie~--~~~~~l~~ 1039 (1113)
+ ......+++.|..++..++..++. ..+++.|...+.+.+. .....|.-.|..|... ...+....
T Consensus 179 L~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 179 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 3 445578888888888888764322 1267777777765422 2344444455555431 12222211
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1040 QL-PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1040 ~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.. ...+|.|++.+.+.+.+|++.|..+|..+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 11 346899999999999999999999998876
No 91
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.62 E-value=0.053 Score=53.68 Aligned_cols=106 Identities=13% Similarity=0.221 Sum_probs=77.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHhhCcchHHHHH--
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCRKPFESYME-- 570 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~~L~~l~~l~~~~~~~~~~~l~-- 570 (1113)
.+.+.||. +..+|-.+|..... .-.+.+.+|.++|.. .|.+|+..+|.+|..++..||..|...+.
T Consensus 28 ~l~~~Dw~----~ileicD~In~~~~-------~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask 96 (152)
T 3rru_A 28 GVQTEDWG----QFMHICDIINTTQD-------GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK 96 (152)
T ss_dssp SCCSCCHH----HHHHHHHHHHHSTT-------HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred CCCCccHH----HHHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 56788997 56666666766432 335678899999985 69999999999999999999999965543
Q ss_pred HHHHHHHHHhc----CCchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 571 RILPHVFSRLI----DPKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 571 ~ll~~ll~klg----D~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
.++..++.++. .....||+++.+.+..|.+.|..+.-+..
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~ 140 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSE 140 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHH
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchH
Confidence 34443333332 22345999999999999999987643333
No 92
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.59 E-value=0.63 Score=52.99 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=125.1
Q ss_pred CCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Q 001255 879 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 879 ~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
++.+.++|++-..... +++.+.|.++++++-...... |.++|+.++....|.+..||.....+|.+.|..
T Consensus 24 ~~~v~~lln~A~~~~~---~~Kl~~L~q~~EL~l~~dpsL----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--- 93 (386)
T 3o2t_A 24 SERVVDLLNQAALITN---DSKITVLKQVQELIINKDPTL----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--- 93 (386)
T ss_dssp HHHHHHHHHHHHHCCS---THHHHHHHHHHHHHHTTCGGG----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhccCh---HHHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---
Confidence 3457888888777542 689999999999876555543 555666777878899999999999999999973
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh-------cCh-----hh-------HHHHhhhhhccCChhHHH
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-------YDP-----FR-------CLSVIVPLLVTEDEKTLV 1019 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~-------~~p-----~~-------~l~~l~~~l~s~~~~~~~ 1019 (1113)
-..++..+++.|...+.|..+.|.+.+..|+..+-.. .+. +. +-..|...+.+.+.-+++
T Consensus 94 -~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl 172 (386)
T 3o2t_A 94 -DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRT 172 (386)
T ss_dssp -CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 2344666777777777888788888888777554421 121 12 233334455677788999
Q ss_pred HHHHHHHHHHHhhC-----------------------------HHHHHhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 001255 1020 TCINCLTKLVGRLS-----------------------------QEELMAQLPSFLPALFEAFGN--QSADVRKTVVFCLV 1068 (1113)
Q Consensus 1020 ~al~~L~~lie~~~-----------------------------~~~l~~~L~~lip~l~~~l~D--~~seVRkaAv~clv 1068 (1113)
.|+|++..+|--.. ...++..-..++..|...+.+ -++-.=-+.++||.
T Consensus 173 ~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa 252 (386)
T 3o2t_A 173 HAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLA 252 (386)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHH
Confidence 99999999883221 112222233444556666654 34445567888888
Q ss_pred HHHHHhh
Q 001255 1069 DIYIMLG 1075 (1113)
Q Consensus 1069 ~i~~~lG 1075 (1113)
.|.+.=.
T Consensus 253 ~Iak~RP 259 (386)
T 3o2t_A 253 NIARQRP 259 (386)
T ss_dssp HHHHHSG
T ss_pred HHHHhcH
Confidence 8877654
No 93
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.50 E-value=0.094 Score=55.62 Aligned_cols=103 Identities=17% Similarity=0.308 Sum_probs=77.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH------H
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE------S 567 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~------~ 567 (1113)
.+.+.||. +..+|-.+|.+... .-.+.+.+|.++|...|.+|+..+|.+|..++..+|..|+ +
T Consensus 20 ~~~~~dw~----~ileicD~I~~~~~-------~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 20 LLLETDWE----SILQICDLIRQGDT-------QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp TCSSCCHH----HHHHHHHHHHTTSS-------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred CCCCcCHH----HHHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 45678887 45666667766432 2356788999999999999999999999999999998774 4
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 568 YMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 568 ~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
++.. |-.|+.+-. ...|++++.+.+..|.+.|..+..+..
T Consensus 89 fl~~-l~~l~~~~~--~~~Vk~kil~li~~W~~~f~~~~~l~~ 128 (226)
T 3zyq_A 89 TMEE-LKDLLKRQV--EVNVRNKILYLIQAWAHAFRNEPKYKV 128 (226)
T ss_dssp HHHH-HHHHHHHCC--CHHHHHHHHHHHHHHHHHTTTCGGGHH
T ss_pred HHHH-HHHHhccCC--CHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 4443 333444433 355999999999999999987765443
No 94
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.37 E-value=0.27 Score=57.78 Aligned_cols=181 Identities=9% Similarity=0.152 Sum_probs=113.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc-h-hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-S-IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~-~-~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
++.++..|...+ ++.+..|+..|..+...+.. . .+. -...+..|.+.|.+.+..++..|+..|..|+.... .
T Consensus 4 l~~lv~~L~s~~---~~~q~~A~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~ 77 (457)
T 1xm9_A 4 IPKAVQYLSSQD---EKYQAIGAYYIQHTCFQDESAKQQVY--QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-T 77 (457)
T ss_dssp HHHHHHHHHSSC---THHHHHHHHHHHHHTSSCSSHHHHHH--HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-H
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHHcCChHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-H
Confidence 677888887765 47899999999987754322 1 111 12346778888888899999999999999997422 1
Q ss_pred hhhH--HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhc--------cCC--------
Q 001255 960 MEDS--VEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLV--------TED-------- 1014 (1113)
Q Consensus 960 ~~~~--~~~~l~~ll~~~~-Ds~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~--------s~~-------- 1014 (1113)
.... -...+|.|++.+. +....+++.|..+|..++.. +.. .+++.|...+. +..
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhccccc
Confidence 1111 2246899999998 66789999999999988866 322 25667777772 111
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHhhh--hhHHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Q 001255 1015 EKTLVTCINCLTKLVGRLSQEELMAQL--PSFLPALFEAFGN------QSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~~~~~l~~~L--~~lip~l~~~l~D------~~seVRkaAv~clv~i~ 1071 (1113)
......|...|..|... ++...... ..++|.|+..+.+ .+..+...|+.++..+.
T Consensus 157 ~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 11222455555555532 22211111 1456666665553 44556777777766654
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.28 E-value=0.058 Score=61.08 Aligned_cols=120 Identities=5% Similarity=0.048 Sum_probs=87.8
Q ss_pred hhhhhh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHH---HHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 957 KDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCL---SVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 957 ~~~~~~-~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l---~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
|..|.+ ....+++.+++++..+....++-+--.+..++.. ++.++ ..+.--+++.+.-.+-.||..|+.+...
T Consensus 58 G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~- 134 (355)
T 3tjz_B 58 GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS- 134 (355)
T ss_dssp TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT-
T ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH-
Confidence 555533 3567889999999999899999998888887766 34444 2222333456666777888888887531
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1033 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1033 ~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
+ .+..+.+.+.+++.|+++.|||+|+.|...+|...+|-+..++..+
T Consensus 135 ---~---m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l 181 (355)
T 3tjz_B 135 ---T---MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA 181 (355)
T ss_dssp ---T---THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH
T ss_pred ---H---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 2 2566788999999999999999999998888877777666666543
No 96
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.24 E-value=0.44 Score=55.98 Aligned_cols=173 Identities=10% Similarity=0.049 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhcCCchhhH-HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH-H-HHHHHHHHHHh
Q 001255 899 SKHGALQQLIKASVANDHSIWT-KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-V-EIVIEKLLHVT 975 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~-~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~-~-~~~l~~ll~~~ 975 (1113)
.+..|...|..+.......... ...+..+..|...|...+..+++.|+..|..|+..-....... + ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 4667777777766544311111 1124567888888988889999999999999976311112222 2 24788899864
Q ss_pred -CCChHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhhhhccCCh----hHHHHHHHHHHHHHHh--hCHHHHHhh
Q 001255 976 -KDAVPKVSNEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDE----KTLVTCINCLTKLVGR--LSQEELMAQ 1040 (1113)
Q Consensus 976 -~Ds~~~Vr~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~s~~~----~~~~~al~~L~~lie~--~~~~~l~~~ 1040 (1113)
......+++.|..++..++..+.. .-+++.|...|.+.+. .....|.-.|..|... ...+.....
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i 375 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 445678888888898888874322 1367777778765422 2344444455555431 122222111
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1041 -LPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1041 -L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
-...+|.|++.+.+.+.+|++.|..+|..+.
T Consensus 376 ~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 376 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1346899999999999999999999998876
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.12 E-value=11 Score=48.49 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=112.8
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch---------hhhhhHHHHHHHHHHHHhC-------CC------
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK---------DVMEDSVEIVIEKLLHVTK-------DA------ 978 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~---------~~~~~~~~~~l~~ll~~~~-------Ds------ 978 (1113)
.++..++..++..+.+.+-.|...++..+..++..+. ..+.+++..++..++.++. |.
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 5688889999999988888888889999888876532 3356778888888887765 11
Q ss_pred ---hHHHHHHHHHHHHHHHhhcChhhHHH----Hhhhhhc-------cCChhHHHHHHHHHHHHHHhhCHHHH-----Hh
Q 001255 979 ---VPKVSNEAEHCLTVVLSQYDPFRCLS----VIVPLLV-------TEDEKTLVTCINCLTKLVGRLSQEEL-----MA 1039 (1113)
Q Consensus 979 ---~~~Vr~aa~~~l~~l~~~~~p~~~l~----~l~~~l~-------s~~~~~~~~al~~L~~lie~~~~~~l-----~~ 1039 (1113)
..+.|+... .+.-.+...+++.++. ++.+++. +.+|+.+-.+|-+|..+.|.+..... ..
T Consensus 408 ~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 408 EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 124666666 5555556678888888 7777663 23688888888888888776653221 13
Q ss_pred hhhhHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHhh
Q 001255 1040 QLPSFLPALFEAFG-----NQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~-----D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.++.+++.+...+. +..+-||..+..+++.++.-+.
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~ 527 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD 527 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56777777777765 8999999999999999887776
No 98
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.93 E-value=0.29 Score=57.47 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh-hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh----
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKD-VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---- 1001 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~-~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~---- 1001 (1113)
+..|...|...+..++..|+..|+.|+..... ...-.-...+|.|++.+.+....++..|..++..|+...+..+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34466677777888999999999999854322 1112233579999999998889999999999999987522222
Q ss_pred ---HHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhC-HHHHHhhhhhHHHHHHHHh--------cC--------CCHHHH
Q 001255 1002 ---CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS-QEELMAQLPSFLPALFEAF--------GN--------QSADVR 1060 (1113)
Q Consensus 1002 ---~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~-~~~l~~~L~~lip~l~~~l--------~D--------~~seVR 1060 (1113)
.++.|..+|. +.+......+...|..+...-. +..+. ...+|.|++.+ .+ .+.+|.
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~---~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI---ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH---HHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH---hccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 4778888887 6666666677777777774411 12222 26678888888 22 356777
Q ss_pred HHHHHHHHHHHHH
Q 001255 1061 KTVVFCLVDIYIM 1073 (1113)
Q Consensus 1061 kaAv~clv~i~~~ 1073 (1113)
+.|..+|..++..
T Consensus 161 ~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 161 FNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHccC
Confidence 7898888877753
No 99
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.87 E-value=0.15 Score=53.82 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=75.9
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHH
Q 001255 488 DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFES 567 (1113)
Q Consensus 488 e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~ 567 (1113)
.+-++ .+.+.||.- +.+|-.+|.+.+. .-.+.+.+|.++|...|.+|+..+|.+|..++..+|..|+.
T Consensus 12 ~AT~~-~~~~~dw~~----~leicd~i~~~~~-------~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ 79 (220)
T 1dvp_A 12 NATSH-LRLEPDWPS----ILLICDEINQKDV-------TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE 79 (220)
T ss_dssp HHHCT-TCSSCCHHH----HHHHHHHHHTTSS-------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHcCC-CCCCcCHHH----HHHHHHhhcCCCc-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH
Confidence 33343 456889985 4446666765442 34567889999999999999999999999999999988853
Q ss_pred ------HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc
Q 001255 568 ------YMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS 606 (1113)
Q Consensus 568 ------~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~ 606 (1113)
.+..+. .++.+ .....||+++.+.+..|.+.|..+.
T Consensus 80 eva~~~fl~~l~-~l~~~--~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 80 EVFTKENCEMFS-SFLES--TPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHSSHHHHHHHH-HHHHH--CSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHhHHHHHHHH-HHhcC--CCcHHHHHHHHHHHHHHHHHhccch
Confidence 344332 23333 3345699999999999999887543
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.57 E-value=0.19 Score=64.91 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHhcCCchh-----hHHhHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhchhhhhhHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSI-----WTKYFNQILTAVLEVLD-----DADSSVREVALSLINEMLKNQKDVMEDSVEI 966 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~-----~~~~f~~ll~~Ll~~L~-----D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~ 966 (1113)
|.++..||..|..+-..-.... ..+.+..++..|...+. +.++.||..++.+|....+.... -..|+..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l~~ 535 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhHHH
Confidence 9999999999876543211100 01122334444555543 77888999999999998876543 2368889
Q ss_pred HHHHHHH--HhCCChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhc
Q 001255 967 VIEKLLH--VTKDAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLV 1011 (1113)
Q Consensus 967 ~l~~ll~--~~~Ds~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~ 1011 (1113)
+|+.++. .+.|+.+.|+.+|-.++..+++.|... .++..+.+.+.
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 9999998 888898999999999999999887652 35555555444
No 101
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.87 Score=56.30 Aligned_cols=146 Identities=9% Similarity=0.142 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHHHhhcChh---
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPK---VSNEAEHCLTVVLSQYDPF--- 1000 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~---Vr~aa~~~l~~l~~~~~p~--- 1000 (1113)
+..|...+...+..+++.+..+|..|+.....+-.---...++.||..+.+.... ++..|..++-.+.-..+|.
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f 538 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc
Confidence 4456677777889999999999999987644331111224577777777665443 7877777777666444433
Q ss_pred ------hHHHHhhhhhcc-CCh-------------hHHHHHHHHHHHHHHhhCH--HHHHh-hhh--hHHHHHHHHhcCC
Q 001255 1001 ------RCLSVIVPLLVT-EDE-------------KTLVTCINCLTKLVGRLSQ--EELMA-QLP--SFLPALFEAFGNQ 1055 (1113)
Q Consensus 1001 ------~~l~~l~~~l~s-~~~-------------~~~~~al~~L~~lie~~~~--~~l~~-~L~--~lip~l~~~l~D~ 1055 (1113)
..++.|...|.. ... ..+.+|+..|+.|...-+. +.+.. .+. ..+|.|...+.+.
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~ 618 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence 345666666651 111 1256888889999854322 23322 233 3789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 001255 1056 SADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1056 ~seVRkaAv~clv~i~~ 1072 (1113)
+..||++|..|+..++.
T Consensus 619 n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 619 NVPLQRSTLELISNMMS 635 (778)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999988875
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.68 E-value=0.077 Score=50.75 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
+.++..|.+.+ |..|..|+..|..+ +. .. +..|.+.|.|.+..||..|+..|..+..
T Consensus 15 ~~l~~~L~~~~---~~vR~~A~~~L~~~---~~-----~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 15 VPRGSHMADEN---KWVRRDVSTALSRM---GD-----EA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------CCSSC---CCSSSSCCSSTTSC---SS-----TT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHh---Cc-----hH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 44455555443 35666666555422 11 11 2457778889999999999888776532
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHH
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLT 1026 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~ 1026 (1113)
...++.|++.+.|+...||..|..++..+. ....++.|...+.+.++..+..|+..|+
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 234777778888999999999998887653 4467888888887777777776666543
No 103
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.58 E-value=0.45 Score=46.38 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHHHHHHhCCChH
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEKLLHVTKDAVP 980 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~ll~~~~Ds~~ 980 (1113)
...+|-++|+.... .=++.+.+|.++|...|+.+...||.+|..++++-|..|...+ .-++..++..+.....
T Consensus 25 ~ileicD~I~~~~~-----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~ 99 (140)
T 3ldz_A 25 LILDICDKVGQSRT-----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 99 (140)
T ss_dssp HHHHHHHHHTTSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCCc-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCH
Confidence 55566667765431 2356688899999999999999999999999999998886432 3344444444444568
Q ss_pred HHHHHHHHHHHHHHhhcChh
Q 001255 981 KVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 981 ~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.|++.+.+.+..|...++-.
T Consensus 100 ~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 100 KVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999887653
No 104
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=93.54 E-value=0.21 Score=48.47 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh---C-
Q 001255 901 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT---K- 976 (1113)
Q Consensus 901 ~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~---~- 976 (1113)
.-.|++|.++...... ..|.+|+..|.++|.++++.+.-+||.+|..|+.+-...|...+..-+..|=.+. +
T Consensus 29 gylm~EIA~~T~~s~~----~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~ 104 (140)
T 1vdy_A 29 VYKLEEICDLLRSSHV----SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGH 104 (140)
T ss_dssp HHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHHhcch----hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCC
Confidence 3456666655543321 3468999999999999999999999999999998776777666554333222111 1
Q ss_pred -------CChHHHHHHHHHHHHHHHhh
Q 001255 977 -------DAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 977 -------Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
|....||+.|.+++..|...
T Consensus 105 ~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 105 PDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp CCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred CCcccccchhHHHHHHHHHHHHHHhCc
Confidence 33488999999999988654
No 105
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.52 E-value=0.88 Score=44.72 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHHHHHHhCC---
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEKLLHVTKD--- 977 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~ll~~~~D--- 977 (1113)
...+|-++|+.... .=.+.+.+|.++|...|+.+...||.+|..+.++-|..|...+ .-|+..++..+.+
T Consensus 21 ~~leicD~I~~~~~-----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~ 95 (148)
T 1mhq_A 21 AIQNFCEQVNTDPN-----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYL 95 (148)
T ss_dssp HHHHHHHHHHHSSH-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccC
Confidence 45566666766541 2456688899999999999999999999999999999986543 5677777776654
Q ss_pred ---ChHHHHHHHHHHHHHHHhhcCh
Q 001255 978 ---AVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 978 ---s~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
....|++.+.+.+..|...++-
T Consensus 96 ~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 96 GSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999999988754
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.24 E-value=0.44 Score=47.67 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHHHHHHhCC-Ch
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEKLLHVTKD-AV 979 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~ll~~~~D-s~ 979 (1113)
...+|-++|+.... .-++.+.+|.++|...|+.+...||.+|..++++-|..|...+ .-++..++..+.. ..
T Consensus 35 ~~leicD~I~~~~~-----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~ 109 (163)
T 1x5b_A 35 LIMDICDKVGSTPN-----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAH 109 (163)
T ss_dssp HHHHHHHHHHHSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCC
Confidence 44556666766431 2456688899999999999999999999999999998886332 3355555444433 45
Q ss_pred HHHHHHHHHHHHHHHhhcChh
Q 001255 980 PKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
..|++.+.+.+..|...++-.
T Consensus 110 ~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 110 PKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999887653
No 107
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.11 E-value=0.99 Score=54.46 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=76.1
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--chh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKN--QKD 958 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~--~~~ 958 (1113)
.++.++..|...+ .+.+.+|...|..+..........-.-...+..|.+.|...+..+++.|+..|..|+.. ...
T Consensus 49 ~i~~LV~~L~s~~---~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 49 ELPEVIAMLGFRL---DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 5888999987654 46778888888877654321110001122357788888888999999999999999863 222
Q ss_pred hhhhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhh
Q 001255 959 VMEDSVEIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~D-s~~~Vr~aa~~~l~~l~~~ 996 (1113)
+..---...||.|++.+.. ....+++.|..||-.+...
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 2111122468888888874 4578888888888887753
No 108
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.01 E-value=1.7 Score=52.50 Aligned_cols=144 Identities=12% Similarity=0.172 Sum_probs=97.1
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHhch---hhhhhHH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh
Q 001255 927 LTAVLEVLDD-ADSSVREVALSLINEMLKNQK---DVMEDSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 927 l~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~---~~~~~~~--~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
+..|+..|.+ .+..+++.|+..|..|+.... ..+...+ +..+|.|++.+......|++.|-.++..++......
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence 4555666643 468899999999999986432 1222222 466999999999888999999999999998754332
Q ss_pred -----hHHHHhhhhhccCC--------hhHHHHHHHHHHHHHHhhCHHHHHhh-hhhHHHHHHHHhcCC--CHHHHHHHH
Q 001255 1001 -----RCLSVIVPLLVTED--------EKTLVTCINCLTKLVGRLSQEELMAQ-LPSFLPALFEAFGNQ--SADVRKTVV 1064 (1113)
Q Consensus 1001 -----~~l~~l~~~l~s~~--------~~~~~~al~~L~~lie~~~~~~l~~~-L~~lip~l~~~l~D~--~seVRkaAv 1064 (1113)
.+++-|...|.+.+ ..+...|+..|..++.. ..+..... =...+|.|+..+.+. ...++++|-
T Consensus 390 ~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 390 ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 36666777776542 23344566666666632 22222111 134678888888875 888999998
Q ss_pred HHHHHHH
Q 001255 1065 FCLVDIY 1071 (1113)
Q Consensus 1065 ~clv~i~ 1071 (1113)
.+|..+|
T Consensus 469 ~vL~nl~ 475 (584)
T 3l6x_A 469 LVLQTIW 475 (584)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888777
No 109
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.99 E-value=1.3 Score=44.61 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCC--
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-- 977 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~D-- 977 (1113)
+...+|-++|+.... .-.+.+..|.++|...|+.+...||.+|..++++-|..|... -.-|+..|+..+..
T Consensus 32 ~~ileicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~ 106 (171)
T 1juq_A 32 EYIIGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY 106 (171)
T ss_dssp HHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence 356677777776532 245678889999999999999999999999999999988743 33567777776652
Q ss_pred ----ChHHHHHHHHHHHHHHHhhcCh
Q 001255 978 ----AVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 978 ----s~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
....|++.+.+.+..|...++-
T Consensus 107 ~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 107 LGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999999998764
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.98 E-value=1.4 Score=53.13 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=103.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch--------------hhH-HhH---HHHHHHHHHHhcCCCHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHS--------------IWT-KYF---NQILTAVLEVLDDADSSVRE 943 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~--------------~~~-~~f---~~ll~~Ll~~L~D~n~~vr~ 943 (1113)
++.++..|.+..++ .+.-+.+|+-|..++...... .|. +.| .+-+..|+..|...+..+|.
T Consensus 62 l~~li~~L~~d~~D-~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 62 MEHLIHVLQTDRSD-SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp HHHHHHHHHSCTTC-HHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 56677777766544 455666777776666443211 111 111 22355678888888899999
Q ss_pred HHHHHHHHHHHhchhhhhhHHH---HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccC
Q 001255 944 VALSLINEMLKNQKDVMEDSVE---IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTE 1013 (1113)
Q Consensus 944 ~aL~~L~~L~~~~~~~~~~~~~---~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~ 1013 (1113)
.++.+|..|+.+.+.....++- .-++.|++.+.|+.+.||..+...+-.+...-+- +-.|+.|..+|..+
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 9999999999998887777654 5899999999999999999999999888866221 12466666666543
Q ss_pred C----hhHHHHHHHHHHHHHHh
Q 001255 1014 D----EKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 1014 ~----~~~~~~al~~L~~lie~ 1031 (1113)
. ...-.-|+.+|..|+..
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHTT
T ss_pred CCCccchhHHHHHHHHHHHHhc
Confidence 2 34445688888888844
No 111
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.95 E-value=1.4 Score=55.72 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=95.5
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
+..||+.+.+..+ .+.|..+...|.-+ --+..+. ... |++.| .+.++.+|-.+..++.--.-..|..
T Consensus 509 i~~LL~~~~e~~~--e~vrR~aalgLGll-~~g~~e~----~~~----li~~L~~~~dp~vRygaa~alglAyaGTGn~- 576 (963)
T 4ady_A 509 IHDMFTYSQETQH--GNITRGLAVGLALI-NYGRQEL----ADD----LITKMLASDESLLRYGGAFTIALAYAGTGNN- 576 (963)
T ss_dssp HHHHHHHHHHCSC--HHHHHHHHHHHHHH-TTTCGGG----GHH----HHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-
T ss_pred HHHHHHHHhccCc--HHHHHHHHHHHHhh-hCCChHH----HHH----HHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-
Confidence 5666666544322 24555555555433 2222221 222 22222 2456777766655554433333321
Q ss_pred hhHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHh
Q 001255 961 EDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1039 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~ 1039 (1113)
..+..||+.+ .|..+.||++|..++-.|.-. .++.+..++..+.++.++-+|.++.-.|+.+--.-+
T Consensus 577 -----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~------ 644 (963)
T 4ady_A 577 -----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG------ 644 (963)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC------
T ss_pred -----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC------
Confidence 2344455433 477889999998888766533 345555555445567788888877766666542222
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1040 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.+.++..|....+|.+.+||.+|+.+|--|.
T Consensus 645 -~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 645 -LQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp -CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 2344556777789999999999999886543
No 112
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.89 E-value=1 Score=44.25 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCC--
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-- 977 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~D-- 977 (1113)
++..+|-++|+.... .=.+.+..|.++|...|+.+...||.+|..+.++-|..|... -+-|+..|+..+.+
T Consensus 30 ~~ileicD~I~~~~~-----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~ 104 (149)
T 3g2s_A 30 ASINGFCEQLNEDFE-----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY 104 (149)
T ss_dssp HHHHHHHHHGGGSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHCCCC-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 366677777776542 235568889999999999999999999999999999998653 34577777777754
Q ss_pred ----ChHHHHHHHHHHHHHHHhhcCh
Q 001255 978 ----AVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 978 ----s~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
....|++.+.+.+..|...++-
T Consensus 105 ~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 105 LGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999998754
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=92.65 E-value=0.24 Score=63.68 Aligned_cols=173 Identities=11% Similarity=0.077 Sum_probs=116.9
Q ss_pred HHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHhh
Q 001255 920 TKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVME-DSVEIVIEKLLHVTKDAV-PKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 920 ~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~~~-~~~~~~l~~ll~~~~Ds~-~~Vr~aa~~~l~~l~~~ 996 (1113)
.++.+.++..|...+. +++- +|..+|.+++.+.-..--.+. ..-..++..++.++.|+. -+||+.|..+|..++..
T Consensus 796 ~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 796 KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 4556667777766665 4566 899999999886653221222 223467777888899999 99999999999999866
Q ss_pred c-ChhhHHHHhhhhhcc--C-------------ChhHHHHHHHHHHHHHHhhCHHH-HHhhhhhHHHHHHHHhcCCCHHH
Q 001255 997 Y-DPFRCLSVIVPLLVT--E-------------DEKTLVTCINCLTKLVGRLSQEE-LMAQLPSFLPALFEAFGNQSADV 1059 (1113)
Q Consensus 997 ~-~p~~~l~~l~~~l~s--~-------------~~~~~~~al~~L~~lie~~~~~~-l~~~L~~lip~l~~~l~D~~seV 1059 (1113)
. +...+..++..+... + ....+.+|+=-|+.+|...|-+. +.+.+|.++..|.....|+.+ |
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i 953 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-T 953 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-H
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-h
Confidence 5 424333433322221 1 11456788888888888877554 356788888889989999665 9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHH
Q 001255 1060 RKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1094 (1113)
Q Consensus 1060 RkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~ 1094 (1113)
++++.+|+..+.+.--|.-.-+=...++.|+.-|+
T Consensus 954 ~~tvk~tlseFkrTH~D~W~~~k~~Ft~eqL~~l~ 988 (997)
T 1vsy_5 954 GNAAKNTISEFKKVRADTWKFDRASFNTEELEDLE 988 (997)
T ss_dssp HHHTHHHHHHHHHHTSTTHHHHGGGCCSSTTGGGS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcCHHHHHHHh
Confidence 99999999999887765322233344555554443
No 114
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.63 E-value=0.83 Score=48.50 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHHhchh-hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh---
Q 001255 927 LTAVLEVLDDADS--SVREVALSLINEMLKNQKD-VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--- 1000 (1113)
Q Consensus 927 l~~Ll~~L~D~n~--~vr~~aL~~L~~L~~~~~~-~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--- 1000 (1113)
+..|...|...+. .++..|...|+.|+..-.. +-.-.-...+|.|++.+......|++.|..+|..|+...+-.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3446666765555 7887888999998865432 222222356899999999888999999999999998642222
Q ss_pred ----hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHhh-CHHHHHhhhhhHHHHHHH-------HhcC---------CCHH
Q 001255 1001 ----RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFE-------AFGN---------QSAD 1058 (1113)
Q Consensus 1001 ----~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~-~~~~l~~~L~~lip~l~~-------~l~D---------~~se 1058 (1113)
-.++.|...|. +.+......+.-.|..|...- .+..+ ....+|.|.. ++.| .+++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i---~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM---ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH---HHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH---HhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 25777888886 455555554444444444211 11222 1223455543 2222 3779
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhh
Q 001255 1059 VRKTVVFCLVDIYIMLGKAFLPYLE 1083 (1113)
Q Consensus 1059 VRkaAv~clv~i~~~lGe~i~p~l~ 1083 (1113)
|+..|..||..+... +++..+.+.
T Consensus 167 v~~na~~~L~nLss~-~~~~R~~~r 190 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSA-GADGRKAMR 190 (233)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 999999999877542 334555553
No 115
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.48 E-value=1.8 Score=45.94 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=75.5
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchh-hHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-hh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSI-WTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KD 958 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~-~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~-~~ 958 (1113)
.++.+++.|...+.. .+.+..|...|..+...+.... .--..+ .+..|.+.|...+..+++.|+..|..|+... ..
T Consensus 9 ~i~~lV~lL~s~~~~-~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHML-PSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCC-HHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCch-HHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 478888888766531 2456677778877664442111 111123 3577888888888999999999999998732 22
Q ss_pred hhhhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhh
Q 001255 959 VMEDSVEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~-Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
+..-.-...+|.|++.+. .....+++.|..+|-.+...
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 221122347888888886 35678999999888888754
No 116
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=91.93 E-value=1.1 Score=44.62 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHH-HHHHh---
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEK-LLHVT--- 975 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~-ll~~~--- 975 (1113)
...+|-++|+.... .-++.+.+|.++|. ..|+.+...||.+|..++++-|..|...+ +-++.. ++..+
T Consensus 36 ~~leicD~I~~~~~-----~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k 110 (157)
T 1elk_A 36 LNMEICDIINETEE-----GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPK 110 (157)
T ss_dssp HHHHHHHHHHHSSS-----HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTT
T ss_pred HHHHHHHHHhCCCc-----cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccC
Confidence 45566667766532 24667888999997 57999999999999999999999887532 235555 44444
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCh
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
.++...|++.+.+.+..|...+..
T Consensus 111 ~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 111 NNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCC
Confidence 345568999999999999998754
No 117
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.92 E-value=1.8 Score=56.06 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHH
Q 001255 922 YFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEKLLHVTK-----DAVPKVSNEAEHCLTVV 993 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D--~n~~vr~~aL~~L~~L~~~~~~~-~~~~~~~~l~~ll~~~~-----Ds~~~Vr~aa~~~l~~l 993 (1113)
.+..++..|.+.+.+ .+-..++.++-.++.|+..+... ..+++..+++.|+..+. |++..|+..+.-++...
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 445555566666654 46779999999999999877654 66889999999998775 56666776666666433
Q ss_pred Hhh--cChh---hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH-------HhhhhhHHHHHHHHhcCCCHHHHH
Q 001255 994 LSQ--YDPF---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-------MAQLPSFLPALFEAFGNQSADVRK 1061 (1113)
Q Consensus 994 ~~~--~~p~---~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l-------~~~L~~lip~l~~~l~D~~seVRk 1061 (1113)
..- .+|. .++.+|..++...+...-..|...+..+.+.+...-. .+.+..++..+.+++++-+..-+.
T Consensus 528 ~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 222 2443 3555555555444444555667788888887775433 357888888888888888999999
Q ss_pred HHHHHHHHHHHHhhh-h-hHhhhhcCChhh
Q 001255 1062 TVVFCLVDIYIMLGK-A-FLPYLERLNSTQ 1089 (1113)
Q Consensus 1062 aAv~clv~i~~~lGe-~-i~p~l~~L~~s~ 1089 (1113)
.++.++..+...+++ . ...++..|-+-.
T Consensus 608 ~lyeai~~vi~~~~~~~~~~~~l~~L~~~~ 637 (1023)
T 4hat_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLP 637 (1023)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHHhH
Confidence 999999998888884 3 555776664433
No 118
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.67 E-value=2.7 Score=47.40 Aligned_cols=177 Identities=13% Similarity=0.055 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 977 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D 977 (1113)
..+.+++.+|.-++..|.... ..---.++..+.+.+...|..++..+.-++..+++. .+.+.++...|.+=+.|
T Consensus 42 ~kc~~~l~kll~l~~~G~~f~-~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-----~~e~iLv~Nsl~kDl~~ 115 (355)
T 3tjz_B 42 RKCAHILTKILYLINQGEHLG-TTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-----AEDVIIVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-----SSCGGGGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhhcCC
Confidence 456779999988877764211 001124455566777788898998887778777664 22233677888888889
Q ss_pred ChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCH
Q 001255 978 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSA 1057 (1113)
Q Consensus 978 s~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~s 1057 (1113)
+.+-||-.|..++-.|...-=.+.+.+.+...|.+++.-.+..|+=+..+|+. ..++.+. .+++.+.+.+.|+++
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~-~~pe~v~----~~~~~l~~ll~d~n~ 190 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK-CSFDVVK----RWVNEAQEAASSDNI 190 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT-TCHHHHH----TTHHHHHHHTTCSSH
T ss_pred CcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc-cCHHHHH----HHHHHHHHHhcCCCc
Confidence 98988888776666554333334567777777777777666666655666763 3445543 456788899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1058 DVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1058 eVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
.|--.|+.++..++.+=+..+.+.+..|
T Consensus 191 ~V~~~Al~lL~ei~~~d~~a~~kLv~~l 218 (355)
T 3tjz_B 191 MVQYHALGLLYHVRKNDRLAVSKMISKF 218 (355)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 9998888877777653222444444444
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.60 E-value=3.2 Score=54.79 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHHHhhcChh---
Q 001255 936 DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD------------AVPKVSNEAEHCLTVVLSQYDPF--- 1000 (1113)
Q Consensus 936 D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D------------s~~~Vr~aa~~~l~~l~~~~~p~--- 1000 (1113)
..++.++..++.+|..+..-... -..|+..+|.+|+..+.| ..+.|+.+|-.|+..++..|+..
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35778999999999887765432 236899999999988876 46799999999999999887542
Q ss_pred ---hHHHHhhhhhccCC---hhHHHHHHHHHHHHHHhhCHHH-HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1001 ---RCLSVIVPLLVTED---EKTLVTCINCLTKLVGRLSQEE-LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1001 ---~~l~~l~~~l~s~~---~~~~~~al~~L~~lie~~~~~~-l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
.+...+...+.... ......-.+.+..+....++++ ....|..+++.+.+.+.+. ++++ +..-...++..
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~--~~~~-~~s~~~~f~~~ 698 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQ--DMHR-VLSDVDAFIAY 698 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCH--HHHH-HHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccH--HHHH-hhcCHHHHHHH
Confidence 23333333332222 2233333455555555545443 3344899999999988654 4666 55555789999
Q ss_pred hh-hhhHhhhhcCChhh--Hh-------hHHHHHHhh
Q 001255 1074 LG-KAFLPYLERLNSTQ--LR-------LVTIYANRI 1100 (1113)
Q Consensus 1074 lG-e~i~p~l~~L~~s~--~k-------Ll~~yi~R~ 1100 (1113)
+| +...+|....++.- ++ .+...++|.
T Consensus 699 ~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~ 735 (1204)
T 3a6p_A 699 VGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRT 735 (1204)
T ss_dssp HTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHh
Confidence 99 56777776665532 34 677788885
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.86 E-value=2.1 Score=45.07 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=92.2
Q ss_pred HHHHHHHHH-hhhhhhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcH
Q 001255 64 EMFIPVLFK-LVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSA 142 (1113)
Q Consensus 64 ~~~lp~Ll~-~~~~t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~ 142 (1113)
..+++.|.. ......==|.+-+..++..++....+.++++.+..-+ .+.|.-||+.+.+.+.. |..........
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~-~d~n~~VRR~Ase~~rp----W~~~~~~k~dp 176 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWL-KSSNLHTRRAATEGLRI----WTNRPYFKENP 176 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH-HCSSHHHHHHHHHHTCS----GGGSTTTTTCH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-cCCCHHHHHHHHHhhHH----HhccchhhcCH
Confidence 446665555 3344444567777778888887666667888888776 68999999999999764 55322345668
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHhc
Q 001255 143 DLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSS 185 (1113)
Q Consensus 143 ~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~ 185 (1113)
+.+.++|.....|.+--||..---++.-|.|..|+....|++.
T Consensus 177 ~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 177 NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999885
No 121
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.48 E-value=1.8 Score=53.51 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=61.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTA-VLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~-Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
|-.+|+.|...+ +++|..|+..|..++......... ....++.. |...|.|++..||+.|..+|+.|+...|+.+
T Consensus 36 i~Pll~~L~S~~---~~~r~~A~~al~~l~~~~~~~~l~-~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 36 ILPVLKDLKSPD---AKSRTTAAGAIANIVQDAKCRKLL-LREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp THHHHHHHSSSC---CSHHHHHHHHHHHHTTSHHHHHHH-HHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCCC---HHHHHHHHHHHHHHHcCcHHHHHH-HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 456788887654 589999999999998543222111 12233333 4556899999999999999999998877765
Q ss_pred hhH--HHHHHHHHHHHh
Q 001255 961 EDS--VEIVIEKLLHVT 975 (1113)
Q Consensus 961 ~~~--~~~~l~~ll~~~ 975 (1113)
-.+ -..+++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHH
Confidence 444 223666666554
No 122
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.03 E-value=5.6 Score=50.33 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHHHHHHH-----------HHHhhchHHHHHHH-----------------HHHHHHhhhh-hhHHHHHhH
Q 001255 35 DRRSSIVKQACHLLCFLS-----------KELLGDFEACAEMF-----------------IPVLFKLVVI-TVLVIAESS 85 (1113)
Q Consensus 35 dlRS~vv~~Ac~~l~~La-----------~~L~~~f~~~a~~~-----------------lp~Ll~~~~~-t~kvi~~sa 85 (1113)
+....+.|-++..|+.+. ..|....+++++.. +..||+.+.+ ....|..+|
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHH
Confidence 556677788888887654 33333333333322 2335555442 234566666
Q ss_pred HHHHHHHhhhCCCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHH
Q 001255 86 DNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTAR 165 (1113)
Q Consensus 86 ~~ai~~ii~~~~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR 165 (1113)
..+|-.|...- +..++.+++.+.++.++.+|..++..|.++-...+. ..+.+.|.+...|.|.+||..|-
T Consensus 599 ViaLGlI~~g~--~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 599 VIALGFVLLRD--YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HHHHHHHTSSS--CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHhhccCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHH
Confidence 66665553332 355666666666677888888888777766432221 23455788889999999999999
Q ss_pred HHHHHHHh
Q 001255 166 MCYRMFAK 173 (1113)
Q Consensus 166 ~a~~~~~~ 173 (1113)
.+++....
T Consensus 669 ~ALG~Ig~ 676 (963)
T 4ady_A 669 IALSMILI 676 (963)
T ss_dssp HHHHHHST
T ss_pred HHHHHHhc
Confidence 99998753
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.48 E-value=16 Score=42.31 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHH
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCL 1003 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l 1003 (1113)
.+-+.++++.++|.+..||.+|.+-|-.+|+. .++.-+.--|...+.--...-...+..++..+... .|...|
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl 136 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTL 136 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHH
Confidence 33445566666666677777776666666653 22333333333444433345566666666666655 555555
Q ss_pred HHhhhhhccCChhHHHHHHHHHHHHHHhhCH
Q 001255 1004 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1034 (1113)
Q Consensus 1004 ~~l~~~l~s~~~~~~~~al~~L~~lie~~~~ 1034 (1113)
..+...|.+.+..+|-.||++|..=+..++.
T Consensus 137 ~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 137 GGLFSQILQGEDIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHhhcch
Confidence 5555555444555555566666544434443
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.29 E-value=2.9 Score=44.10 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhC-CC
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK-DA 978 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~-Ds 978 (1113)
+...+|-++|+.... .=.+.+.+|.++|...|+.+...||.+|..++++-|..|... -+-++..|...++ ..
T Consensus 27 ~~ileicD~I~~~~~-----~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~ 101 (226)
T 3zyq_A 27 ESILQICDLIRQGDT-----QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQV 101 (226)
T ss_dssp HHHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCC
Confidence 356677777776432 235668889999999999999999999999999999876532 1223333332222 34
Q ss_pred hHHHHHHHHHHHHHHHhhcChh
Q 001255 979 VPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
...|++.+.+.+..|...+.-+
T Consensus 102 ~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 102 EVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999887553
No 125
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.04 E-value=18 Score=42.00 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
...+.+.|...|...+...+..+=+.|-.|++ ......|..++.-+..+...|| +.|++.|...+
T Consensus 98 i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-------~Dpk~tl~~lf~~i~~~~e~~R---er~lkFi~~kl 162 (507)
T 3u0r_A 98 LPRVADILTQLLQTDDSAEFNLVNNALLSIFK-------MDAKGTLGGLFSQILQGEDIVR---ERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHG
T ss_pred hhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHcccchHHH---HHHHHHHHHHH
Confidence 44555555555543344444444444444443 2223344444443333446677 44666665443
No 126
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=88.98 E-value=7.7 Score=39.74 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHhHH-HHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Q 001255 501 CARVSAFNYLRSLLQQGPKGIQEVIQNFE-KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSR 579 (1113)
Q Consensus 501 keR~eal~~L~~~l~~~~~~~~~v~~~l~-~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~k 579 (1113)
..|.+||+.|+. +.+++...+-+- -+.+.++..+. |..+....+.++..++..-.=.+++|+..++|.++.+
T Consensus 23 ~~r~~aL~sL~~-----D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK-----ESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH-----CSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 469999999988 555663222221 22333333443 6777788889999998886666799999999999999
Q ss_pred h-cCCch--hhHHHHHHHHHHHHhhCCc--cchHHHHHHhh----cc-CCCHHHHHHHHHHH
Q 001255 580 L-IDPKE--LVRQPCSTTLDIVSKTYSV--DSLLPALLRSL----DE-QRSPKAKLAVIEFA 631 (1113)
Q Consensus 580 l-gD~K~--~vr~~a~~~L~~i~e~~~~--~~~l~~l~~~~----~~-~knpkvk~~~L~~l 631 (1113)
+ +-..+ .+|+-|...|..+...|+. ..+-+.+.+.+ .| .++.-..-+++.=+
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 8 42222 4999999999999987664 33444444443 23 24555665555443
No 127
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=88.75 E-value=3.4 Score=42.40 Aligned_cols=131 Identities=17% Similarity=0.274 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHhHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC
Q 001255 899 SKHGALQQLIKASVANDHSIWTKYFNQILTA-VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 977 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~-Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D 977 (1113)
.|.+||+.|+ .+.+....-++|-..+.. +..-+. |.......+.++++|+.+..-.+++|+..++|.++.|+-.
T Consensus 24 ~r~~aL~sL~---~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~ 98 (196)
T 4atg_A 24 MKDIAIECLE---KESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIG 98 (196)
T ss_dssp THHHHHHHHH---HCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh---cCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHh
Confidence 4889998876 333333333444332221 222232 5666677799999999987777999999999999988721
Q ss_pred ---ChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhc--cCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 978 ---AVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLV--TEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 978 ---s~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~--s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
....+|+-|...+..|+..++.. +++..+...+. .+...+.-+|+-.|. .+|.+.+.
T Consensus 99 k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~----~lG~~~vr 166 (196)
T 4atg_A 99 KSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS----ILSKNVVN 166 (196)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH----HHCHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH----HhHHHHHH
Confidence 11279999999999999887652 45655555553 345566667775444 45655554
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.83 E-value=3.4 Score=43.31 Aligned_cols=91 Identities=8% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhC-CCh
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK-DAV 979 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~-Ds~ 979 (1113)
.+.+|-++|+.... .-++.+.+|.++|...|+.+...||.+|..++++-|..|... -+.++..++..++ ...
T Consensus 25 ~~leicd~i~~~~~-----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~ 99 (220)
T 1dvp_A 25 SILLICDEINQKDV-----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH 99 (220)
T ss_dssp HHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhhcCCCc-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 45567777765432 245668889999999999999999999999999999887543 1224444444333 445
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 001255 980 PKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~ 998 (1113)
..|++.+.+.+..|...+.
T Consensus 100 ~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 100 ENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998865
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=86.06 E-value=2 Score=41.61 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=78.8
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH
Q 001255 490 LSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM 569 (1113)
Q Consensus 490 l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l 569 (1113)
+.+ ...+.+|-.=-.-|++|.++...... ..+.++++.|.++|.|.+..|...+|.+|..|+....+.|.+|+
T Consensus 16 V~~-ATs~d~~~~pgylm~EIA~~T~~s~~------~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~ 88 (140)
T 1vdy_A 16 IDA-VTSDEDKVAPVYKLEEICDLLRSSHV------SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREM 88 (140)
T ss_dssp HHH-TTCSCSSCCCHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHH-HhcCCCCCCcHHHHHHHHHHHHhcch------hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHH
Confidence 444 46788888888888888887765431 23578999999999999999999999999999988778899998
Q ss_pred HHHHHHHHHHh---c--C------CchhhHHHHHHHHHHHHh
Q 001255 570 ERILPHVFSRL---I--D------PKELVRQPCSTTLDIVSK 600 (1113)
Q Consensus 570 ~~ll~~ll~kl---g--D------~K~~vr~~a~~~L~~i~e 600 (1113)
..-+..|=... | | .-..||++|++++..+-.
T Consensus 89 r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 89 QRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 88775432222 1 2 124588899998888754
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=83.54 E-value=22 Score=39.46 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHh---h--
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPS---C-- 561 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~---~-- 561 (1113)
.++|. .+.+.+=++++.+|..|+++++.-..-.++.-.. .=+..|.+...+...+....+|..|..|... |
T Consensus 121 ~~iie--kL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~--~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILE--KLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS--EGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHH--HHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT--THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHH--HHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh--ccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 45554 4557889999999999999987644422221111 2366778888888888888888888888653 1
Q ss_pred ---CcchHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhh
Q 001255 562 ---RKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKH 638 (1113)
Q Consensus 562 ---~~~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~ 638 (1113)
.+.|-+|++.++. ..-..|...|.+.|.++.+.-+... ..+ ..++=.+. -+.
T Consensus 197 vvs~~~fI~~lyslv~-------s~~~~V~k~AL~LL~v~V~~se~~~--~lv------------~~av~~v~---~~~- 251 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCA-------SLSRLVVKTALKLLLVFVEYSENNA--PLF------------IRAVNSVA---STT- 251 (339)
T ss_dssp HHHCHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHHCGGGH--HHH------------HHHHHHHH---HHH-
T ss_pred hhCCHHHHHHHHHHHc-------CccHHHHHHHHHHHHHHHccCcccc--hHH------------HHHHHHhh---hcc-
Confidence 2345556655555 2334566778888888877654322 111 11111111 110
Q ss_pred ccCCCCCCChhhHHHHHHhHccccC---CCCHHHHHHHHHHHHHHHhhcChh
Q 001255 639 AMNSEGSGNLGILKLWLAKLTPLVH---DKNTKLKEAAITCIISVYTHYDST 687 (1113)
Q Consensus 639 ~~~~~~~~~~~~~~~~l~~l~~~~~---d~n~~VR~aA~~~L~~l~~~~~~~ 687 (1113)
+.. .+..++..++ ..+.++.-.|..+|-.++...+++
T Consensus 252 ~~~------------p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 252 GAP------------PWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp CCC------------TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSH
T ss_pred CCC------------cHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 100 1223344444 257888888999998888765543
No 131
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.48 E-value=9.5 Score=46.05 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=56.5
Q ss_pred hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1001 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ---LPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1001 ~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~---L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.-++.|...+++.++..++.++++|+.|....+ +.++.+ -|.-+|.|+..++|..--+|..|...|.++..
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~-~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG-PQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc-HHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 457788888999999999999999999986654 333332 34678999999999999999998888777654
No 132
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.85 E-value=14 Score=47.72 Aligned_cols=81 Identities=7% Similarity=0.217 Sum_probs=66.0
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh--------hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM--------EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 992 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~--------~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~ 992 (1113)
+.|..++..|++.+.|+++.|.+.|+..+..|+..-+..| .+|++.++..+-....+=...=....-+|+..
T Consensus 562 ~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 562 KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999877655 46888888877777777556666667778888
Q ss_pred HHhhcChhh
Q 001255 993 VLSQYDPFR 1001 (1113)
Q Consensus 993 l~~~~~p~~ 1001 (1113)
++...|+..
T Consensus 642 vi~~~p~~~ 650 (1073)
T 3gjx_A 642 MIGAQTDQT 650 (1073)
T ss_dssp HHTTCCCHH
T ss_pred HHHhCCCcc
Confidence 888888743
No 133
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.62 E-value=36 Score=38.61 Aligned_cols=154 Identities=10% Similarity=0.139 Sum_probs=96.7
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+.+.|++....+ + .+|.+-|..+++++-...+. -+.++++-+...-.|.+..|-....+.|.+......
T Consensus 27 v~~lln~A~~~~-~-~~Kl~~L~q~~EL~l~~dps------Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~--- 95 (386)
T 3o2t_A 27 VVDLLNQAALIT-N-DSKITVLKQVQELIINKDPT------LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI--- 95 (386)
T ss_dssp HHHHHHHHHHCC-S-THHHHHHHHHHHHHHTTCGG------GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---
T ss_pred HHHHHHhhhccC-h-HHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH---
Confidence 456676533333 3 59999999999986543331 344566666677779999999888888888776532
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCC-HHHHHHHHHHHHHHHhhhccCCCC
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRS-PKAKLAVIEFAISSLNKHAMNSEG 644 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~kn-pkvk~~~L~~l~~~l~~~~~~~~~ 644 (1113)
.++..+++.|..-|.|.-..|-..+..|...+ ++.+++++....+ ...-..+++|+.. +
T Consensus 96 -el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl---------Ypl~f~~i~~~~~~~~~~e~~W~~m~~-l--------- 155 (386)
T 3o2t_A 96 -ELLLKLIANLNMLLRDENVNVVKKAILTMTQL---------YKVALQWMVKSRVISELQEACWDMVSA-M--------- 155 (386)
T ss_dssp -GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------HHHHHHHHHHC-CCCHHHHHHHHHHHH-H---------
T ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------HHHHHHHHhcCCCcchhHHHHHHHHHH-H---------
Confidence 34566667666666665555555555555553 3556666655443 3445667777653 2
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHH
Q 001255 645 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISV 680 (1113)
Q Consensus 645 ~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l 680 (1113)
|..| +.+....|.-||-.+.+++-.+
T Consensus 156 -------K~~I---l~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 156 -------AGDI---ILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp -------HHHH---HHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHH---HHHhccCCcchHHHHHHHHHHH
Confidence 2222 2233446888888887766553
No 134
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=79.25 E-value=4.1 Score=40.09 Aligned_cols=92 Identities=9% Similarity=0.120 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHH-HHHHhCC-
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEK-LLHVTKD- 977 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~-ll~~~~D- 977 (1113)
...+|-++|+.... .=.+.+.+|.++|.. .|+.+...||.+|..++++-|..|...+ .-|+.. |+..+.+
T Consensus 36 ~ileicD~In~~~~-----~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~ 110 (152)
T 3rru_A 36 QFMHICDIINTTQD-----GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPR 110 (152)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGG
T ss_pred HHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCC
Confidence 55566667766532 245668889999974 5888888899999999999999887553 245554 3343432
Q ss_pred --ChHHHHHHHHHHHHHHHhhcCh
Q 001255 978 --AVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 978 --s~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
....|++.+.+.+..|...++-
T Consensus 111 ~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 111 YNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp GCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3357999999999999988754
No 135
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=78.78 E-value=6.2 Score=38.39 Aligned_cols=75 Identities=8% Similarity=-0.006 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhh
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll-~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
+-..|...+.+.+...++.-+..+|.++..|+++.|..|..++...|+.++ +.+......++......+++|-+.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 456667777777777788888899999999999998877766555555555 566555689999999999999955
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=77.41 E-value=45 Score=36.94 Aligned_cols=112 Identities=11% Similarity=0.225 Sum_probs=83.7
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC---chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK- 957 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~---~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~- 957 (1113)
+-.+.+.+...+ -+.-.+|+..+.+++..+. ...+..||++++...-..|...|=.++.++|.+|++|+-.-.
T Consensus 166 f~~fF~yv~~~~---FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N 242 (341)
T 1upk_A 166 FYDFFRYVEMST---FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 242 (341)
T ss_dssp GGHHHHHTTCSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhcCCC---chHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH
Confidence 334555555444 3677888888888886654 245677899999888888888899999999999999987532
Q ss_pred -hhhhhHHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 958 -DVMEDSVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 958 -~~~~~~~~--~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
.-+..|+. .-|--++..+.|+.+.|+-.|-...+.++.+
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 22445532 3555666789999999999999999988865
No 137
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=76.36 E-value=17 Score=46.76 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=109.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhchhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLIN--EMLKNQKDVM 960 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~--~L~~~~~~~~ 960 (1113)
.+|++ ++... -.+.|..|=..|..++..-.... .-.+..|+..|...+.+.++.-.+.||.+|. .+.......+
T Consensus 136 ~dL~~-Ls~S~--Y~~VR~~AQ~~L~~~~~~~~gs~-~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~ 211 (997)
T 1vsy_5 136 VDIIQ-LATSL--YPDIYKPAQGTLVHCMKQLVGSY-GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY 211 (997)
T ss_dssp HHHHH-HHTSS--CHHHHHHHHHHHHHHHTTBTTHH-HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH
T ss_pred HHHHH-HhcCc--hHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh
Confidence 44443 44444 25789999888888876533211 1234555555555555677888888888776 3433332223
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh--------HHHHhhh---hhcc-------CChhHHHHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVP---LLVT-------EDEKTLVTCI 1022 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~--------~l~~l~~---~l~s-------~~~~~~~~al 1022 (1113)
.++..+++.|+++....++.|..-+..+++.+.....+.. .+.-+.| .+.. .+.+.+....
T Consensus 212 -~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~ 290 (997)
T 1vsy_5 212 -KDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYL 290 (997)
T ss_dssp -HHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999998877788999999988888776543321 0000000 0000 0000011111
Q ss_pred HHHH----HHHHh--------hCHHHH-H------------hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1023 NCLT----KLVGR--------LSQEEL-M------------AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1023 ~~L~----~lie~--------~~~~~l-~------------~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
+.+. .+++. |-...+ . +.-++++..+++++.|..+.+|+.|..++..+...+-
T Consensus 291 ~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k 368 (997)
T 1vsy_5 291 SLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKII 368 (997)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 11221 221111 0 1125677889999999999999999999999988764
No 138
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=75.48 E-value=14 Score=35.15 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHhh----CcchHHHHHHHHHHHH
Q 001255 504 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD--PHHKVAQAALSTLADIIPSC----RKPFESYMERILPHVF 577 (1113)
Q Consensus 504 ~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D--sn~kV~~~~L~~l~~l~~~~----~~~~~~~l~~ll~~ll 577 (1113)
++.++.+...+-.+.. .-..+++++.+.|.. ++.|+ ..|=++.+++..+ +..|.+.+..+|+.++
T Consensus 21 ~~sI~~~s~w~l~h~~-------~a~~Iv~~i~~~l~~~~~~~KL--~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~ 91 (132)
T 4flb_A 21 MESIQGLSSWCIENKK-------HHSTIVYHWMKWLRRSAYPHRL--NLFYLANDVIQNCKRKNAIIFRESFADVLPEAA 91 (132)
T ss_dssp HHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCHHHHH--HHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHcCChhhHH--HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 4555666666655432 345677777776654 45554 4455666666654 3457788888999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHHh--hCCccchHHHHHH
Q 001255 578 SRLIDPKELVRQPCSTTLDIVSK--TYSVDSLLPALLR 613 (1113)
Q Consensus 578 ~klgD~K~~vr~~a~~~L~~i~e--~~~~~~~l~~l~~ 613 (1113)
..+.|.+ .|.++.+.|+.|.+ .|+++. +..|-.
T Consensus 92 ~~~~~~~--~~~kl~~ll~iW~~r~vf~~~~-i~~L~~ 126 (132)
T 4flb_A 92 ALVKDPS--VSKSVERIFKIWEDRNVYPEEM-IVALRE 126 (132)
T ss_dssp HTTCSTT--THHHHHHHHHHHHHHTSSCHHH-HHHHHH
T ss_pred HHhCCHH--HHHHHHHHHHHhccCCCcCHHH-HHHHHH
Confidence 9988765 89999999999987 687775 444443
No 139
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.93 E-value=13 Score=45.84 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh-H-HHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhhcChhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMED-S-VEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQYDPFR 1001 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~-~-~~~~l~~ll-~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~ 1001 (1113)
|++.|...+...|..||..|..|+.. ..... . -+.++..+| ..+.|+...||.+|-.+++.++..-+++.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 33457788999999999999999963 22222 2 223555555 46899999999999999999987766653
No 140
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=73.53 E-value=17 Score=35.30 Aligned_cols=127 Identities=10% Similarity=0.025 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCC-cccHHHHHHHhhhcCCHHHHHHHHHHH-HHHHhhCCCchh
Q 001255 60 EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYA-LLVLEHWPDAPE 137 (1113)
Q Consensus 60 ~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~-~r~l~~i~~~~~~~K~~~vR~~~a~~L-~~~l~~~~~~~~ 137 (1113)
+..++.+...|-++..+++..|.+-..-|+. |..+ ..|+..+...+. |.+.-++..+.|| .-+++..+.. .
T Consensus 6 ~~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~----~~~~a~~Iv~~i~~~i~--k~~p~~KL~~LYL~DsIvkN~g~~-y 78 (144)
T 1sz9_A 6 EVIVKDFNSILEELTFNSRPIITTLTKLAEE----NISCAQYFVDAIESRIE--KCMPKQKLYAFYALDSICKNVGSP-Y 78 (144)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH----TGGGHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTCTT-H
T ss_pred HHHHHHHHHHHHHhccccHhHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--cCCHhhHHHHHHHHHHHHHhccch-H
Confidence 3445556665655544677777654444443 5544 477777777773 4555555555555 6666766543 4
Q ss_pred hhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHHHHHhhc
Q 001255 138 IQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEE 197 (1113)
Q Consensus 138 ~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~Ld~~~~k~l~~~ 197 (1113)
..-....|.+++.......|+++|....+.|.++.+.+|.. ..-+++...+.|+..
T Consensus 79 ~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~----~~vF~~~~l~~i~~~ 134 (144)
T 1sz9_A 79 TIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG----LPLFEGSALEKIEQF 134 (144)
T ss_dssp HHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS----SCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC----CCCCCHHHHHHHHHH
Confidence 44455556667777767779999999999999999776653 334566666666653
No 141
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=71.71 E-value=13 Score=35.41 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc--CcchHHHHHHHHHHHHHHHhh---CcchHHHHHHHHHHHHHH
Q 001255 505 SAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD--DPHHKVAQAALSTLADIIPSC---RKPFESYMERILPHVFSR 579 (1113)
Q Consensus 505 eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~--Dsn~kV~~~~L~~l~~l~~~~---~~~~~~~l~~ll~~ll~k 579 (1113)
+.+..+...+-.+.. .-+.+++++.+.|. .++.|+. .|=++.+++..+ +..|.......|+.+|..
T Consensus 21 ~sI~~~s~w~l~~~~-------~a~~iv~~i~~~l~~~~~~~KL~--~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~ 91 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRK-------HAGPIVSVWHRELRKAKSNRKLT--FLYLANDVIQNSKRKGPEFTREFESVLVDAFSH 91 (135)
T ss_dssp THHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCTTTHHH--HHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 455555666555432 44567777777664 4666754 444555665544 445666677777777766
Q ss_pred h---cCCchhhHHHHHHHHHHHHh--hCCccchHHHHHHhhccC
Q 001255 580 L---IDPKELVRQPCSTTLDIVSK--TYSVDSLLPALLRSLDEQ 618 (1113)
Q Consensus 580 l---gD~K~~vr~~a~~~L~~i~e--~~~~~~~l~~l~~~~~~~ 618 (1113)
+ +|.+ +|.++.++|+.|.+ .|+++. +..|-..+.+.
T Consensus 92 ~~~~~~~~--~k~kl~kll~iW~~r~vf~~~~-i~~L~~~l~~~ 132 (135)
T 4fu3_A 92 VAREADEG--CKKPLERLLNIWQERSVYGGEF-IQQLKLSMEDS 132 (135)
T ss_dssp HHHHHHTT--SSHHHHHHHHHHHHTTSSCHHH-HHHHHHTC---
T ss_pred HHHcCCHH--HHHHHHHHHHHhcCCCCcCHHH-HHHHHHHHhCC
Confidence 5 3444 78899999999987 577665 55555555433
No 142
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=70.85 E-value=69 Score=34.11 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=48.5
Q ss_pred hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1001 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1001 ~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
.+++.+.++....+...+.-+.+++....... ...++.+++.|..-+.|.++.|-|.++.|+..+|..+
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNG 121 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46666666554444445554555555444221 1457788888989999999999999999999999876
No 143
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=70.44 E-value=21 Score=37.42 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhH
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKT 1017 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~ 1017 (1113)
....+-.|+.++....+......-.+++.+++ ..|+=..|=.-|..++..++.. .|..+++.+.+++.+.+.=.
T Consensus 74 ~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~-----~~~nWd~~D~~a~~~~g~~~~~-~p~~~~~~l~~W~~s~~~w~ 147 (232)
T 3jxy_A 74 EREFQAAALDIMQKYKKHINETHIPFLEELIV-----TKSWWDSVDSIVPTFLGDIFLK-HPELISAYIPKWIASDNIWL 147 (232)
T ss_dssp BHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT-----SSCCHHHHHHHTTTHHHHHHHH-CGGGGGGTHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-----cCCChHHHHHhhHHHHHHHHHH-CHHHHHHHHHHHhcCCchHH
Confidence 34466666666654332221111123333333 2344333333334444455554 56667788889998876555
Q ss_pred HHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhh
Q 001255 1018 LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1083 (1113)
Q Consensus 1018 ~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~ 1083 (1113)
++.|+.++-..... .....+.+.+...+.|.+--|+|+.-.+|-.+.+.-.+.+.+||.
T Consensus 148 rR~ai~~~l~~~~~-------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 148 QRAAILFQLKYKQK-------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHTTTTCGGG-------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 56666554221111 112344566778899999999999999999999998888999996
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=68.99 E-value=84 Score=34.27 Aligned_cols=177 Identities=12% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcC--CchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh-------hHHHHHHH
Q 001255 899 SKHGALQQLIKASVAN--DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME-------DSVEIVIE 969 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~--~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~-------~~~~~~l~ 969 (1113)
.-..||+.|.++..+- +.......|.. |..|+ +.......++++|..+|..=+++.++.++ .|+..+++
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~l-L~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFAL-LANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHH-HHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHH-HHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3455666666654332 22222223433 34444 33445667999999999999988876433 56776776
Q ss_pred HHHHHhCC---ChHHHHHHHHHHHHHHHhhcC------hhhHHHHhhhhhccCChhHHHHHHHHHHHHHH--hhCH----
Q 001255 970 KLLHVTKD---AVPKVSNEAEHCLTVVLSQYD------PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVG--RLSQ---- 1034 (1113)
Q Consensus 970 ~ll~~~~D---s~~~Vr~aa~~~l~~l~~~~~------p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie--~~~~---- 1034 (1113)
.|-+.... ....+...-..++..++..-. ...++.++. . ......+.+-+++++..+.. .+..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~-~-~~~d~~~k~Kvl~li~d~f~~~~~~~~~~~ 199 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYE-R-NNKDKQLQIKVLELISKILKADMYENDDTN 199 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHH-H-TTTCHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHc-c-CCCCHHHHHHHHHHHHHHcccccccccccc
Confidence 65554432 345777777788887776521 123333332 2 22233455556777776663 2221
Q ss_pred -----HHHH---hhhhhHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhhhhhH
Q 001255 1035 -----EELM---AQLPSFLPALFEAFGNQS--ADVRKTVVFCLVDIYIMLGKAFL 1079 (1113)
Q Consensus 1035 -----~~l~---~~L~~lip~l~~~l~D~~--seVRkaAv~clv~i~~~lGe~i~ 1079 (1113)
..++ +.+....-.+.+.++|.. -..-+.=..+|+.|+...|+++.
T Consensus 200 ~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~lK 254 (315)
T 3qml_C 200 LILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDIT 254 (315)
T ss_dssp --------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred cchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhcccccC
Confidence 1111 223334445666666532 22444567888899988875444
No 145
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=67.30 E-value=1.6e+02 Score=32.64 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=111.7
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc---hh--hHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH---SI--WTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKN 955 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~---~~--~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~ 955 (1113)
.+..|+..|..-+ |+.|+++..-...+++.... .. +-.+-.+++..|+...++.+.. ..+=.+|++.++
T Consensus 79 ll~~Li~~l~~L~---fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diA--l~~G~mLRecir- 152 (341)
T 1upk_A 79 LLSTLVADLQLID---FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--LNCGIMLRECIR- 152 (341)
T ss_dssp HHHHHHHTGGGSC---HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--HHHHHHHHHHHT-
T ss_pred HHHHHHHhcccCC---chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhH--hHHHHHHHHHHH-
Confidence 3566777776665 79999999888888876421 11 1122356777787777665432 222233444333
Q ss_pred chhhhhhHHHH-----HHHHHHHHhCCChHHHHHHHHHHHHHHHhhc----------ChhhHHHHhhhhhccCChhHHHH
Q 001255 956 QKDVMEDSVEI-----VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----------DPFRCLSVIVPLLVTEDEKTLVT 1020 (1113)
Q Consensus 956 ~~~~~~~~~~~-----~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~----------~p~~~l~~l~~~l~s~~~~~~~~ 1020 (1113)
.+..+.. .+-++++-+..+.=+|...|-..++.+...- +.+.++.-....|.+.+|-+++-
T Consensus 153 ----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 153 ----HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp ----SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ----hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 1222222 2235666777788888888888888766541 34456666677788999999999
Q ss_pred HHHHHHHHH-HhhCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHH
Q 001255 1021 CINCLTKLV-GRLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFC 1066 (1113)
Q Consensus 1021 al~~L~~li-e~~~~~~l~~~L--~~lip~l~~~l~D~~seVRkaAv~c 1066 (1113)
++++|+.++ ++.........+ ++-+..+...+.|...-|+=.|.-.
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhV 277 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHV 277 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhh
Confidence 999999877 333434443322 3334566677889998888777654
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=67.26 E-value=1.6e+02 Score=32.63 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=73.7
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhc-CCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-hh-
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVA-NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KD- 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~-~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~-~~- 958 (1113)
+.+++..|.+.+ .++++.+|..|..++.+ ..+....- -.+=+..|+....+...+....+|..|+.|.... |.
T Consensus 120 a~~iiekL~~~~---~~~lr~aLfsLk~~~q~D~~Fa~EFI-~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 120 VNAILEKLYSSS---GPELRRSLFSLKQIFQEDKDLVPEFV-HSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHCC---HHHHHHHHHHHHHHHHTCTTHHHHHH-HTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCC---cHHHHHHHHHHHHHhhcchHHHHHHH-HhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence 467888888765 47899999999997764 34322111 1222667778888888888888888888876631 11
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
.+-.+ ..+|-.|...+......|.+.|.+.|..++...
T Consensus 196 gvvs~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 196 GVVAH-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHHHC-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred chhCC-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 11111 235555555555566888888888888888775
No 147
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=61.01 E-value=33 Score=33.45 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=51.8
Q ss_pred HhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH--HHHHHh-------CCChHHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIE--KLLHVT-------KDAVPKVSNEAEHC 989 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~--n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~--~ll~~~-------~Ds~~~Vr~aa~~~ 989 (1113)
..|.+|+..|.++|.|. +-.+.-.||.+|.+|+++-...+-..+..-+. .-|.-+ .|..-.||+.|...
T Consensus 55 ~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l 134 (148)
T 1inz_A 55 VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQL 134 (148)
T ss_dssp HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHH
Confidence 46899999999999986 55578899999999999865555443332222 222332 25566899999888
Q ss_pred HHHHH
Q 001255 990 LTVVL 994 (1113)
Q Consensus 990 l~~l~ 994 (1113)
+..+-
T Consensus 135 ~~LL~ 139 (148)
T 1inz_A 135 VALLR 139 (148)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87654
No 148
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=60.09 E-value=2e+02 Score=31.51 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCC-chh-hHHhHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 001255 899 SKHGALQQLIKASVAND-HSI-WTKYFNQILTAVLEVLDDADSSVRE-VALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~-~~~-~~~~f~~ll~~Ll~~L~D~n~~vr~-~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~ 975 (1113)
.+++.|+-+...+.... ... +......|+..++.-..+..+..|+ ..|.++..++..++..+.+++..++..++++.
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45666766666664432 221 2222223333322222234455553 57899999999999888888887777777654
Q ss_pred ----C---CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh
Q 001255 976 ----K---DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1041 (1113)
Q Consensus 976 ----~---Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L 1041 (1113)
+ +.-++.|..--..++++..+|-+. ++. + ....-...++.+-|-+.+-.++.-+.-|
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~a-l~~-----l---p~~~fklvidsiiWa~kH~~r~V~e~gL 188 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPA-FLA-----I---PPTQFKLVLDSIIWAFKHTMRNVADTGL 188 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTH-HHH-----S---CHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHH-HHc-----C---CHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 3 467899999999999998875541 221 1 1111222356666766555555444334
No 149
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=59.20 E-value=33 Score=33.27 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH--HHh-------CCChHHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL--HVT-------KDAVPKVSNEAEHC 989 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~--n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll--~~~-------~Ds~~~Vr~aa~~~ 989 (1113)
..|.+|+..|.++|.|. +-.+.-.||.+|..|+++-...+-..+..-+..|. .-+ .|....||+.|...
T Consensus 37 ~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l 116 (144)
T 1eyh_A 37 VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQL 116 (144)
T ss_dssp HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHH
Confidence 56999999999999986 44477899999999999865555444333333222 221 14456788888887
Q ss_pred HHHHH
Q 001255 990 LTVVL 994 (1113)
Q Consensus 990 l~~l~ 994 (1113)
+..|-
T Consensus 117 ~~Ll~ 121 (144)
T 1eyh_A 117 VALLR 121 (144)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 77654
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=56.40 E-value=34 Score=38.94 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHH--HHHHhhCcchHHHHHHHHHHHHHHhc
Q 001255 504 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPFESYMERILPHVFSRLI 581 (1113)
Q Consensus 504 ~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~--~l~~~~~~~~~~~l~~ll~~ll~klg 581 (1113)
.-=|..|..+++..+.. +...-...++..+.+.+..+|++|+-.||.... .++....+.-+.-+..++|.|....-
T Consensus 269 vlFL~Ele~iLe~~~~~--~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~ 346 (403)
T 3fga_B 269 VMFLNELEEILDVIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 346 (403)
T ss_dssp HHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33466778888766531 111233456777778889999999999996553 22222222334555666666665543
Q ss_pred -CCchhhHHHHHHHHHHHHhh
Q 001255 582 -DPKELVRQPCSTTLDIVSKT 601 (1113)
Q Consensus 582 -D~K~~vr~~a~~~L~~i~e~ 601 (1113)
.=.+.||..+..+|..++|.
T Consensus 347 ~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 347 THWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CCSCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHh
Confidence 34677888888888888764
No 151
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=55.20 E-value=86 Score=30.21 Aligned_cols=79 Identities=8% Similarity=0.174 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-------VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~-------~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
+...|...+.+.+....+.-+..+|.++..|+++.+. .|.+++...|+.++...-...+.++......++.|-
T Consensus 39 ~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 39 FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 3455666666677666667777899999999998876 344444444555443332333889999999999998
Q ss_pred --hhcChh
Q 001255 995 --SQYDPF 1000 (1113)
Q Consensus 995 --~~~~p~ 1000 (1113)
..++++
T Consensus 119 ~r~vF~~~ 126 (145)
T 3d9j_A 119 KNNVFKSE 126 (145)
T ss_dssp HTTSSCHH
T ss_pred CCCCCCHH
Confidence 456664
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=53.80 E-value=25 Score=40.71 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHH--HHHHhhCcchHHHHHHHHHHHHHHh-
Q 001255 504 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPFESYMERILPHVFSRL- 580 (1113)
Q Consensus 504 ~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~--~l~~~~~~~~~~~l~~ll~~ll~kl- 580 (1113)
.-=|..|..+++-.+. . +...-...++..+.+.++.+|++|+..+|.+.. .|+... .++...++|-++.-|
T Consensus 302 vlFL~eleeile~~~~-~-ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L~ 375 (449)
T 2npp_B 302 VMFLNELEEILDVIEP-S-EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLY 375 (449)
T ss_dssp HHHHHHHHHHHTTCCH-H-HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHHH
Confidence 4446678888876553 1 222234567777888899999999999996553 222222 233344445544443
Q ss_pred ---c-CCchhhHHHHHHHHHHHHhhC
Q 001255 581 ---I-DPKELVRQPCSTTLDIVSKTY 602 (1113)
Q Consensus 581 ---g-D~K~~vr~~a~~~L~~i~e~~ 602 (1113)
- .=...||..+..+|..+++.-
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 2 225669999999999888653
No 153
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=53.66 E-value=93 Score=29.80 Aligned_cols=95 Identities=13% Similarity=0.251 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCc----chHHHHHHHHHHHHHHHhhC----cchHHHHHHHHHH
Q 001255 504 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP----HHKVAQAALSTLADIIPSCR----KPFESYMERILPH 575 (1113)
Q Consensus 504 ~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Ds----n~kV~~~~L~~l~~l~~~~~----~~~~~~l~~ll~~ 575 (1113)
.+.++.+...+-.+.. .-..+++++.+.|... +.|+. .|=.+.++++.++ .+|.+.....||.
T Consensus 19 q~sIq~~s~W~l~h~~-------~a~~iv~~~~~~l~~~~~~~~kKL~--~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~ 89 (142)
T 2km4_A 19 QESISSASKWLLLQYR-------DAPKVAEMWKEYMLRPSVNTRRKLL--GLYLMNHVVQQAKGQKIIQFQDSFGKVAAE 89 (142)
T ss_dssp HHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHTSSSSCHHHHHH--HHHHHHHHHHHHGGGTCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhcCCCccceeh--hhhhHHHHHHHHhhcCchHHHHHHHHHHHH
Confidence 3455555665555432 4467888888887664 44543 3444666666543 4566777778888
Q ss_pred HHHHhc-CCchhhHHHHHHHHHHHHh--hCCccch
Q 001255 576 VFSRLI-DPKELVRQPCSTTLDIVSK--TYSVDSL 607 (1113)
Q Consensus 576 ll~klg-D~K~~vr~~a~~~L~~i~e--~~~~~~~ 607 (1113)
+|..+. ..-+.++.++...|+.|.+ .|+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i 124 (142)
T 2km4_A 90 VLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVV 124 (142)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHH
Confidence 887662 1234489999999999965 6877763
No 154
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=52.71 E-value=48 Score=34.31 Aligned_cols=132 Identities=8% Similarity=-0.036 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChh
Q 001255 937 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEK 1016 (1113)
Q Consensus 937 ~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~ 1016 (1113)
.....+..|+.+|..+.+.+....-.+++.+++. .|+=..|=.-| .++..++.. .|..+.+.+..++.+.+.=
T Consensus 67 ~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~-----~~nWd~~D~~a-~~~~~~~~~-~~~~~~~~i~~W~~s~~~w 139 (220)
T 2b6c_A 67 TEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ-----KAWWDSVDAWR-KFFGSWVAL-HLTELPTIFALFYGAENFW 139 (220)
T ss_dssp SSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT-----TCSHHHHHHHH-HHHHHHHHH-SGGGHHHHHHHHTTCSSHH
T ss_pred chhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc-----CCcHHHHHHHH-HHHHHHHHH-ChHHHHHHHHHHHcCCCHH
Confidence 4566777777777765433221111222333332 34433333333 445544444 6777888889999887665
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 001255 1017 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1082 (1113)
Q Consensus 1017 ~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l 1082 (1113)
.++.|+.++-..++. .....+++.+...++|.+--|||+.-.+|-.+.+.-.+.+.+||
T Consensus 140 ~rR~ai~~~l~~~~~-------~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 140 NRRVALNLQLMLKEK-------TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTTTCGGG-------CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-------CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 566666544211221 22344456677799999999999999999999988888888998
No 155
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=48.43 E-value=8 Score=41.15 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=61.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL 1009 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~ 1009 (1113)
|...+.|.+..||..+..- .+. +.+...++|....||.++...+ ++ +.|...
T Consensus 151 l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l-------~~----~~L~~L 202 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLEL 202 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGG
T ss_pred HHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-------CH----HHHHHH
Confidence 3455679999999876553 221 1223457899999999888752 33 345677
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 001255 1010 LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1066 (1113)
Q Consensus 1010 l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~c 1066 (1113)
+...+|..+..+.+- ++ .+.|.. ++|.+..||.+|...
T Consensus 203 l~D~d~~VR~~aa~~-------l~-----------~~~L~~-L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 203 LHDPDWTVRLAAVEH-------AS-----------LEALRE-LDEPDPEVRLAIAGR 240 (244)
T ss_dssp GGCSSHHHHHHHHHH-------SC-----------HHHHHH-CCCCCHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHc-------CC-----------HHHHHH-ccCCCHHHHHHHHHH
Confidence 888899988865543 33 133443 599999999999764
No 156
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=48.14 E-value=1.6e+02 Score=37.98 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHHhcC----CCHHHHHHHHHHHHHHHHhch---hh-hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 927 LTAVLEVLDD----ADSSVREVALSLINEMLKNQK---DV-MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 927 l~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~---~~-~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
+..+...+.+ .+..+++.++-.+..|+...- .. -..++..+...+.+.+.... .+....+|++|...-+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~---~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK---EEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHhhccCC
Confidence 4445555543 466788889988888887532 11 12334555555555554432 2334555566555544
Q ss_pred hhhHHHHhhhhhccC-----C--hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHH
Q 001255 999 PFRCLSVIVPLLVTE-----D--EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF--GNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 999 p~~~l~~l~~~l~s~-----~--~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l--~D~~seVRkaAv~clv~ 1069 (1113)
| ..+++|.++|... + .+.+..|+.-|..+....+ + .+-+.+.+-+ .+.++|||-+|+..|..
T Consensus 470 p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 470 P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-R-------KVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-H-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-H-------HHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 4 4778888887531 2 2345567766665553321 1 2334456666 46889999999987764
No 157
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=47.99 E-value=40 Score=32.61 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc----------CCchhhHHHHHH
Q 001255 526 QNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI----------DPKELVRQPCST 593 (1113)
Q Consensus 526 ~~l~~l~~~l~~~l~Ds--n~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg----------D~K~~vr~~a~~ 593 (1113)
.++.++++.|-++|.|. |++++-.+|-+|..|+....+.+-.|+..-+..| ..|. |.--.||.+|..
T Consensus 37 ~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i-~~L~~F~y~d~~g~D~G~~VR~kak~ 115 (144)
T 1eyh_A 37 VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAV-QTLKDFQYVDRDGKDQGVNVREKAKQ 115 (144)
T ss_dssp HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHH-HGGGGCCCBCTTSCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHH-hhhccceeeCCCccchHHHHHHHHHH
Confidence 47889999999999996 8899999999999999987666766666554433 2222 222257777777
Q ss_pred HHHHHH
Q 001255 594 TLDIVS 599 (1113)
Q Consensus 594 ~L~~i~ 599 (1113)
.+..+.
T Consensus 116 l~~Ll~ 121 (144)
T 1eyh_A 116 LVALLR 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 776665
No 158
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=45.45 E-value=68 Score=30.16 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCC-cccHHHHHHHhhhcCCHHHHHHHHHHH-HHHHhhCCCchhhhh
Q 001255 63 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYA-LLVLEHWPDAPEIQR 140 (1113)
Q Consensus 63 a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~-~r~l~~i~~~~~~~K~~~vR~~~a~~L-~~~l~~~~~~~~~~~ 140 (1113)
.+.-+-..|..+.++...|.+...-| +.|..+ ..|+..+.+.+. |++.-++....|| .-+++.... +....
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~----l~h~~~a~~Iv~~i~~~l~--~~~~~~KL~~LYL~ndIl~ns~~-~~~~~ 78 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWC----IENKKHHSTIVYHWMKWLR--RSAYPHRLNLFYLANDVIQNCKR-KNAII 78 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHH----HHTGGGHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTT-TTCTH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHH--cCChhhHHHHHHHHHHHHHHhcc-cChHH
Confidence 34445556666677776665555444 456655 577777777774 4555566666666 555555432 22233
Q ss_pred cHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHh--hChHH
Q 001255 141 SADLYEDLIRCCVAD-AMSEVRSTARMCYRMFAK--TWPER 178 (1113)
Q Consensus 141 ~~~~l~~~i~k~l~D-a~~eVR~~AR~a~~~~~~--~~p~~ 178 (1113)
..+.+++.|...+.. .++++|..-++.+..+.+ +||..
T Consensus 79 f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~~ 119 (132)
T 4flb_A 79 FRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEE 119 (132)
T ss_dssp HHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCCcCHH
Confidence 455566666555544 377889888888877754 66643
No 159
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=45.03 E-value=2e+02 Score=26.85 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=38.7
Q ss_pred hhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHh
Q 001255 138 IQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFS 184 (1113)
Q Consensus 138 ~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~ 184 (1113)
.....+.|..+|...+.|. ++++.+=.++|+.+...+-+.+..+|.
T Consensus 94 f~~~~~~ll~~l~~~lg~~-~e~~~AW~~~~~~ia~~l~~~~~~~y~ 139 (140)
T 2wy4_A 94 YPIVGACLLKAIKNLLNPD-EATLKAWEVAYGKIAKFYIDIEKKLYD 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667778888888888 999999999999999999988888775
No 160
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=44.70 E-value=68 Score=31.25 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH--HHHHHh-------CCChHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDA---DSSVREVALSLINEMLKNQKDVMEDSVEIVIE--KLLHVT-------KDAVPKVSNEAEH 988 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~---n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~--~ll~~~-------~Ds~~~Vr~aa~~ 988 (1113)
..|.+|+..|.++|.|. +....-.||.+|..|+++-...|-..+..-+. ..|.-+ .|....||+.|..
T Consensus 43 ~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~ 122 (150)
T 3onk_A 43 REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKA 122 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHH
Confidence 46899999999999885 55677789999999999866554433322111 112221 1344578888877
Q ss_pred HHHHHH
Q 001255 989 CLTVVL 994 (1113)
Q Consensus 989 ~l~~l~ 994 (1113)
.+..|-
T Consensus 123 l~~LL~ 128 (150)
T 3onk_A 123 LIELLS 128 (150)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 776543
No 161
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=44.56 E-value=59 Score=37.58 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHhchhhhhhHHHHHHHHHHHHh---
Q 001255 901 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE--MLKNQKDVMEDSVEIVIEKLLHVT--- 975 (1113)
Q Consensus 901 ~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~--L~~~~~~~~~~~~~~~l~~ll~~~--- 975 (1113)
.--|.+|.+++..-....+......|+..|.+++...+.+|.++||.++.. ++ .-+.++...++|.++..+
T Consensus 302 vlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~----~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIM----SLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHH----HHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHH----HHHHhchhhhHHhhHHHHHHH
Confidence 445667777775555444444555666667777788899999999977643 22 234555666777776654
Q ss_pred --CCChHHHHHHHHHHHHHHHhhcChh
Q 001255 976 --KDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 976 --~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.+..+.|+..+..+++.+.+. .+.
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e~-d~~ 403 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFMEM-NQK 403 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHTT-CHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH-CHH
Confidence 355788999999999977655 553
No 162
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=43.61 E-value=54 Score=31.88 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHH--HHHh------c-CCchhhHHHHHHH
Q 001255 526 QNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPFESYMERILPHV--FSRL------I-DPKELVRQPCSTT 594 (1113)
Q Consensus 526 ~~l~~l~~~l~~~l~Ds--n~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~l--l~kl------g-D~K~~vr~~a~~~ 594 (1113)
.++.++++.|-++|.|. |++++-.+|-+|..|+....+.+-.|+..-+..| +..+ | |.--.||.+|...
T Consensus 55 ~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l 134 (148)
T 1inz_A 55 VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQL 134 (148)
T ss_dssp HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHH
Confidence 36788999999999985 8899999999999999987666655555444332 1221 2 2233678888777
Q ss_pred HHHHH
Q 001255 595 LDIVS 599 (1113)
Q Consensus 595 L~~i~ 599 (1113)
+..+.
T Consensus 135 ~~LL~ 139 (148)
T 1inz_A 135 VALLR 139 (148)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 76654
No 163
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.78 E-value=1.8e+02 Score=30.07 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=62.8
Q ss_pred HHHHHHHHhH--HHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhh-------hHHHHHhHHH
Q 001255 17 CFRGLLKQLV--GPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVIT-------VLVIAESSDN 87 (1113)
Q Consensus 17 ~f~~~Lk~l~--~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t-------~kvi~~sa~~ 87 (1113)
.|+..|+... .-+.+.+.+||..|-.+-..-+... . .. -.+.++..|-+...++ ..-+...+-.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~--~~----Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~ 76 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-G--AE----GLASLLDILKRLHDEKEETSGNYDSRNQHEIIR 76 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-H--HH----HHHHHHHHHHHHHTCC-----CCHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-H--Hh----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 4566665531 2244566666666665555444444 1 11 1222222222222111 2344556778
Q ss_pred HHHHHhhhC-------CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCC
Q 001255 88 CIKTMLRNC-------KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD 134 (1113)
Q Consensus 88 ai~~ii~~~-------~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~ 134 (1113)
||++|..+. ..+..+..|...+ .++++.+|..+.+.|.. +..|+.
T Consensus 77 CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~r~~~leLL~~-lc~~~~ 128 (233)
T 2f31_A 77 CLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLSA-LCILPQ 128 (233)
T ss_dssp HHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHHHHHHHHHHHH-HHTCSS
T ss_pred HHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHHH-HHhCCC
Confidence 888887643 3467888888777 79999999999998875 555654
No 164
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=41.49 E-value=53 Score=38.20 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHhch---hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc-----ChhhHHHHhhhh
Q 001255 938 DSSVREVALSLINEMLKNQK---DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY-----DPFRCLSVIVPL 1009 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~---~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~-----~p~~~l~~l~~~ 1009 (1113)
+..+.+ .+..|.+++...- ..|+.|..-+....|+ -+-.+ ..=+.|-++. .-.++++.|..+
T Consensus 334 Dedl~e-dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~---WSP~H------~se~FW~ENa~kf~e~~~~llk~L~~i 403 (480)
T 1ho8_A 334 DEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLC---WSPPH------VDNGFWSDNIDEFKKDNYKIFRQLIEL 403 (480)
T ss_dssp SHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC---CCGGG------GCHHHHHHHSGGGSSGGGHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc---cCCCc------cchhHHHHHHHHHHhcchHHHHHHHHH
Confidence 455554 4666666665422 3477776555544332 11111 0112233332 223577777888
Q ss_pred hcc----------CChhHHHHHHHHHHHHHHhhCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1010 LVT----------EDEKTLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1010 l~s----------~~~~~~~~al~~L~~lie~~~~--~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
|.+ .+..+...|..=++.++.++|. ..+. .+. .-..+.+.|+|.|++||+.|..|+-.++.+
T Consensus 404 L~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~-~lg-~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 404 LQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD-KTG-GKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH-HHS-HHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHH-HcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 763 2344555555668899988874 2332 232 235678899999999999999999877643
No 165
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=39.86 E-value=1.3e+02 Score=28.86 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhc--CcchHHHHHHHHHHHHHHHhhCc-------chHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001255 529 EKVMKLFFQHLD--DPHHKVAQAALSTLADIIPSCRK-------PFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVS 599 (1113)
Q Consensus 529 ~~l~~~l~~~l~--Dsn~kV~~~~L~~l~~l~~~~~~-------~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~ 599 (1113)
..+++.+.+++. .+..|+ .+|=++..+++..+. .|.+.....|+.+|..+-..-+..|.+..+.++.|.
T Consensus 41 ~~IV~~~~~~i~k~~~~~KL--~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 41 KHVVQSVEKFIQKCKPEYKV--PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp HHHHHHHHHHHHHSCGGGHH--HHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccee--ehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 445555555443 455564 445556666665554 566666666777776653333779999999999997
Q ss_pred --hhCCccchHHHHHHhh
Q 001255 600 --KTYSVDSLLPALLRSL 615 (1113)
Q Consensus 600 --e~~~~~~~l~~l~~~~ 615 (1113)
..|+++. +..|...+
T Consensus 119 ~r~vF~~~~-l~~l~~~l 135 (145)
T 3d9j_A 119 KNNVFKSEI-IQPLLDMA 135 (145)
T ss_dssp HTTSSCHHH-HHHHHHHH
T ss_pred CCCCCCHHH-HHHHHHHh
Confidence 4687765 44444443
No 166
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=38.45 E-value=1.5e+02 Score=36.98 Aligned_cols=116 Identities=13% Similarity=0.253 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC--hhhHHHHh----hhhhcc---CChhHHHHHHHHHHHHHH
Q 001255 960 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVI----VPLLVT---EDEKTLVTCINCLTKLVG 1030 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~--p~~~l~~l----~~~l~s---~~~~~~~~al~~L~~lie 1030 (1113)
.+.|++.++|-++-.+-.+...|...+..|++.++-..| ++.++|.+ .+-|++ .+......++++|..++-
T Consensus 333 ~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 333 HEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 467899999999999988889999999999999997654 25555555 344445 233445567788776663
Q ss_pred hhCH-HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1031 RLSQ-EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1031 ~~~~-~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
-+-. .....|+..++..+..+++=.|..==..+..++..+...++
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 3322 22345788888999999998887777778888888887665
No 167
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=38.32 E-value=76 Score=29.91 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=61.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc---hh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ---KD 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~---~~ 958 (1113)
+.+.|..|.... +.++.+...+.++. ++-..|...+.+.+......-+...|.++..|+++- +.
T Consensus 9 l~~~L~~L~~s~--------~sI~~~s~w~l~~~-----~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 9 LEKKLSELSNSQ--------QSVQTLSLWLIHHR-----KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp HHHHHHHCCSST--------THHHHHHHHHHHTG-----GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHccccH--------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 455566664322 24555555444442 234566666777776655555667889999997754 33
Q ss_pred hhhhHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHh--hcChh
Q 001255 959 VMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLS--QYDPF 1000 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~--~~~p~ 1000 (1113)
.|...++..|+.++... ......+++....+++.|-+ .++++
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~ 120 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE 120 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHH
Confidence 45455555566655432 22223467778888888885 46664
No 168
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=37.43 E-value=1.5e+02 Score=32.67 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHhcCC---chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh--h-----hhhHHHH
Q 001255 897 PTSKHGALQQLIKASVAND---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD--V-----MEDSVEI 966 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~---~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~--~-----~~~~~~~ 966 (1113)
++.|.+=..-|+.+....= .....+.|+.+++.+.=.+++.+.+|-+.+|++|.+|+++... . +..|.-.
T Consensus 136 PehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~ 215 (321)
T 1w9c_A 136 PEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCD 215 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 5556555544444444321 2233567999999998778899999999999999999998742 2 4567778
Q ss_pred HHHHHHHHhCCC--hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHH-HHHHHHHH----HhhCHHHHHh
Q 001255 967 VIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTC-INCLTKLV----GRLSQEELMA 1039 (1113)
Q Consensus 967 ~l~~ll~~~~Ds--~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~a-l~~L~~li----e~~~~~~l~~ 1039 (1113)
++..++..+-|+ +......+.-....+. .....+ +-.|+.... ...+..- -+.+..++ .++.++++
T Consensus 216 il~~if~VlTDs~Hk~gF~~q~~iL~~lf~-~ve~~~---i~~pl~~~~-~~~n~~~v~~~l~~lL~~~Fp~l~~~qi-- 288 (321)
T 1w9c_A 216 ILQHIFSVVTDTSHTAGLTMHASILAYMFN-LVEEGK---ISTSLNPGN-PVNNQIFLQEYVANLLKSAFPHLQDAQV-- 288 (321)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHHHHHHHHHH-HHHTTC---CCSCSCSSS-CCCHHHHHHHHHHHHHHHHCTTSCHHHH--
T ss_pred HHHHHHHHHhCchhhccHHHHHHHHHHHHH-HHHcCc---cccccCCCC-CcccHHHHHHHHHHHHHHhCCCCCHHHH--
Confidence 888888888776 3333444433333221 110000 001111110 0011111 23333333 34444443
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1040 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..++.++..-.+| ..+-|..-++.|+.+.
T Consensus 289 --~~fv~glf~~~~d-~~~Fk~~lrDFLIqiK 317 (321)
T 1w9c_A 289 --KLFVTGLFSLNQD-IPAFKEHLRDFLVQIK 317 (321)
T ss_dssp --HHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHccCC-HHHHHHHHHHHHHHHH
Confidence 4555667755443 4577777777777664
No 169
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=34.67 E-value=3e+02 Score=31.34 Aligned_cols=106 Identities=10% Similarity=-0.095 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh--hhhhHHHHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLLHV 974 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~--~~~~~~~~~l~~ll~~ 974 (1113)
|....+.+..+.++-..+....-.+.+...|....+.|++.++.+. .++.-|..+...+|. .-..|.+..|......
T Consensus 284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~-~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQL-KVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 5555566666665554443221112233322222344555565544 467777777777763 3456777777777788
Q ss_pred hCCChHHHHHHHHHHHHHHHhhcChhhHH
Q 001255 975 TKDAVPKVSNEAEHCLTVVLSQYDPFRCL 1003 (1113)
Q Consensus 975 ~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l 1003 (1113)
+|..++.|..............-..+..+
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 89999998887777777666554444433
No 170
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=34.43 E-value=1.2e+02 Score=30.18 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHH--HHHh-------CCChHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVL-DD--ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKL--LHVT-------KDAVPKVSNEAEH 988 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L-~D--~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~l--l~~~-------~Ds~~~Vr~aa~~ 988 (1113)
..|..|+..|.++| .| ++....-.||.+|.+|+++-..+|-.++..-+..| |.-+ .|....||+.|..
T Consensus 66 ~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~ 145 (176)
T 1xgw_A 66 EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKE 145 (176)
T ss_dssp TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHH
Confidence 45889999998885 65 46667778999999999987666555444333222 2222 2455678888888
Q ss_pred HHHHHH
Q 001255 989 CLTVVL 994 (1113)
Q Consensus 989 ~l~~l~ 994 (1113)
.+..|-
T Consensus 146 i~~LL~ 151 (176)
T 1xgw_A 146 LVEFAQ 151 (176)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 777654
No 171
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=33.66 E-value=2.4e+02 Score=31.12 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHH-----HHHHHhchhh-----hhhHHHHHHHHH
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLI-----NEMLKNQKDV-----MEDSVEIVIEKL 971 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~-vr~~aL~~L-----~~L~~~~~~~-----~~~~~~~~l~~l 971 (1113)
+-.-|+.++..++......-|.++...+...+.|..-+ |.+..+... ..|+...... .+.|...++.++
T Consensus 37 gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~ 116 (351)
T 3gvo_A 37 GSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKA 116 (351)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHH
T ss_pred chHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHH
Confidence 33344555555554444445666666666666666544 444443322 1233322211 345555666666
Q ss_pred HHHh
Q 001255 972 LHVT 975 (1113)
Q Consensus 972 l~~~ 975 (1113)
++..
T Consensus 117 le~~ 120 (351)
T 3gvo_A 117 LESI 120 (351)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 6554
No 172
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=33.00 E-value=1e+02 Score=29.90 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHhhcCc---chHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc-----C--Cc---hhhHHHHH
Q 001255 526 QNFEKVMKLFFQHLDDP---HHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI-----D--PK---ELVRQPCS 592 (1113)
Q Consensus 526 ~~l~~l~~~l~~~l~Ds---n~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg-----D--~K---~~vr~~a~ 592 (1113)
.++.++++.|-++|.|. |++.+-.+|.+|..|+....+.+-.|+..-+. ++..|. | .+ -.||.+|.
T Consensus 43 ~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~-~i~~L~~F~~~d~~G~D~G~~VR~kak 121 (150)
T 3onk_A 43 REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTRNSIN-LIRILETFHYIDSQGRDQGINVRTRVK 121 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHH-HHHGGGGCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhhhcccccCCCCCchHHHHHHHHH
Confidence 47789999999999875 89999999999999999877777666655443 233332 2 12 25677777
Q ss_pred HHHHHHH
Q 001255 593 TTLDIVS 599 (1113)
Q Consensus 593 ~~L~~i~ 599 (1113)
+.++.+.
T Consensus 122 ~l~~LL~ 128 (150)
T 3onk_A 122 ALIELLS 128 (150)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7666553
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=32.77 E-value=5.4e+02 Score=29.78 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh--hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~--~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
+.+.+.|....+.|++.++.+.. ++.-|..+...+|. ....+.+..|......+|..++.|..............-.
T Consensus 330 ~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~ 408 (490)
T 3n71_A 330 KLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH 408 (490)
T ss_dssp HHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 34566666666677777776554 68888888888873 3456777777777788999999998888877777666655
Q ss_pred hhhHHHHh
Q 001255 999 PFRCLSVI 1006 (1113)
Q Consensus 999 p~~~l~~l 1006 (1113)
.+...+++
T Consensus 409 ~~eA~~~~ 416 (490)
T 3n71_A 409 IEVGHGMI 416 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 174
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=32.27 E-value=1.3e+02 Score=29.95 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=63.7
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhh-cC--cchHHHHHHHHHHHHHHHhhCcchHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL-DD--PHHKVAQAALSTLADIIPSCRKPFESYMERI 572 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l-~D--sn~kV~~~~L~~l~~l~~~~~~~~~~~l~~l 572 (1113)
.+..|----.-|.+|.+.--+. .++.++++.|-++| .| .|++.+-.+|.+|.+|+....+.|-+|+..-
T Consensus 44 nnd~wGPs~~~m~eIa~~T~~~--------~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~r~~ 115 (176)
T 1xgw_A 44 NDDPWGPSGQLMGEIAKATFMY--------EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREH 115 (176)
T ss_dssp CSCSSCCCHHHHHHHHHHTTCT--------TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHhcCh--------hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4456766666666665533331 36788999997775 55 7999999999999999999777777777665
Q ss_pred HHHH--HHHh------c-CCchhhHHHHHHHHHHHH
Q 001255 573 LPHV--FSRL------I-DPKELVRQPCSTTLDIVS 599 (1113)
Q Consensus 573 l~~l--l~kl------g-D~K~~vr~~a~~~L~~i~ 599 (1113)
+..| |..+ | |.--.||.+|.+.++.+.
T Consensus 116 i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 116 IYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHC
Confidence 5443 1111 2 323357777777666553
No 175
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=31.12 E-value=5.3e+02 Score=27.79 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=32.3
Q ss_pred HHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHH-----HHHHHhchh-----hhhhHHHHHHHHHHHH
Q 001255 906 QLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLI-----NEMLKNQKD-----VMEDSVEIVIEKLLHV 974 (1113)
Q Consensus 906 ~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~-vr~~aL~~L-----~~L~~~~~~-----~~~~~~~~~l~~ll~~ 974 (1113)
-|+.++..++.+....-|.++...+.+.+.|..-+ |.+..+... ..|+..... .+++|...++.++++.
T Consensus 27 ~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~ 106 (333)
T 3bwt_A 27 FLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIEC 106 (333)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHh
Confidence 34444444443333344555555555555665444 434333322 122222211 1345666666666666
Q ss_pred hC
Q 001255 975 TK 976 (1113)
Q Consensus 975 ~~ 976 (1113)
+.
T Consensus 107 ~~ 108 (333)
T 3bwt_A 107 IK 108 (333)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 176
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=30.59 E-value=1.3e+02 Score=28.70 Aligned_cols=111 Identities=6% Similarity=0.002 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCC-cccHHHHHHHhhhcCCHHHHHHHHHHH-HHHHhhCCC---chhh
Q 001255 64 EMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYA-LLVLEHWPD---APEI 138 (1113)
Q Consensus 64 ~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~-~r~l~~i~~~~~~~K~~~vR~~~a~~L-~~~l~~~~~---~~~~ 138 (1113)
+.-+-..|..+.++...|.+... -++.|... ..++..+...+.....+.-++....|| .-+++.... ....
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~----W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~ 80 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASK----WLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ 80 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHH----HHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHH
Confidence 44455677777777776655444 44567654 588888888874322344555555565 445554431 1123
Q ss_pred hhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHH--HhhChHH
Q 001255 139 QRSADLYEDLIRCCVADAMSEVRSTARMCYRMF--AKTWPER 178 (1113)
Q Consensus 139 ~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~--~~~~p~~ 178 (1113)
......|.+++......++++++...++.+..+ +.+||..
T Consensus 81 ~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~ 122 (142)
T 2km4_A 81 DSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQ 122 (142)
T ss_dssp HHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHH
Confidence 334455555555555556899999999998888 6678765
No 177
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=28.80 E-value=2.5e+02 Score=26.68 Aligned_cols=36 Identities=0% Similarity=-0.093 Sum_probs=27.8
Q ss_pred hhcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhh
Q 001255 139 QRSADLYEDLIRCCVA-DAMSEVRSTARMCYRMFAKT 174 (1113)
Q Consensus 139 ~~~~~~l~~~i~k~l~-Da~~eVR~~AR~a~~~~~~~ 174 (1113)
.-..+.|..+|...+. +-++++.++=.++|+.+...
T Consensus 114 ~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~ 150 (151)
T 1sct_B 114 GEIVGPLRQTLKARMGNYFDEDTVAAWASLVAVVQAS 150 (151)
T ss_dssp HTTHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 4456667777777775 68999999999999987653
No 178
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=27.49 E-value=6.1e+02 Score=27.35 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=58.5
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCchhh---HHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchh--hhhhHHHH
Q 001255 893 NDGSPTSKHGALQQLIKASVANDHSIW---TKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKD--VMEDSVEI 966 (1113)
Q Consensus 893 ~~~~~~~R~~AL~~L~~~l~~~~~~~~---~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~--~~~~~~~~ 966 (1113)
.|. .+.|--+|+-++-++.......+ ...-..++..++..+.+ .++..+..+|+++..++..... .+....+.
T Consensus 113 ~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~ 191 (304)
T 3ebb_A 113 NCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRES 191 (304)
T ss_dssp TSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHH
T ss_pred cCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 453 35677777666544432211110 01123455556666654 3555677788888888775432 13334566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
++..+.....+.++.++-++-..+-.++-
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 66666666677788898887777655443
No 179
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=27.11 E-value=3.6e+02 Score=31.26 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHHHhchhh---hhhHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 001255 924 NQILTAVLEVLDD----------ADSSVREVALSLINEMLKNQKDV---MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCL 990 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D----------~n~~vr~~aL~~L~~L~~~~~~~---~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l 990 (1113)
.++++.|.+.|.. .++.+..-||.=|+++++..+.. ++.+ ..=..+++.+.+..++|+..|..|+
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l--g~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT--GGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH--SHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc--CcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3567777777752 25667778899999999877632 3333 1233455667888899999999999
Q ss_pred HHHHh
Q 001255 991 TVVLS 995 (1113)
Q Consensus 991 ~~l~~ 995 (1113)
..|..
T Consensus 472 Qklm~ 476 (480)
T 1ho8_A 472 QAIIG 476 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 180
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=26.73 E-value=2.1e+02 Score=29.28 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=72.3
Q ss_pred HHHHHhhhCCCc-ccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHH
Q 001255 88 CIKTMLRNCKAV-RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARM 166 (1113)
Q Consensus 88 ai~~ii~~~~~~-r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~ 166 (1113)
++..++.. .+ ++.+.|..-+ .+.+.=+|+.+...+ -.|.. +...+.+.+++...+.|..--||.+--=
T Consensus 113 ~~~~~~~~--~~~~~~~~i~~W~-~s~~~w~rR~ai~~~----l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW 181 (220)
T 2b6c_A 113 FFGSWVAL--HLTELPTIFALFY-GAENFWNRRVALNLQ----LMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGW 181 (220)
T ss_dssp HHHHHHHH--SGGGHHHHHHHHT-TCSSHHHHHHHHHTT----TTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHH--ChHHHHHHHHHHH-cCCCHHHHHHHHHHH----HHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 44444433 44 5677788776 688999999998854 24422 3456778888999999999999999999
Q ss_pred HHHHHHhhChHHHHHHHh--cCCHHHHHH
Q 001255 167 CYRMFAKTWPERSRRLFS--SFDPAIQRI 193 (1113)
Q Consensus 167 a~~~~~~~~p~~a~~ll~--~Ld~~~~k~ 193 (1113)
++..+.+..|+....|+. .|++...++
T Consensus 182 ~Lr~~~k~~~~~v~~fl~~~~l~~~~~r~ 210 (220)
T 2b6c_A 182 SLRQYSKTNPQWVEELMKELVLSPLAQRE 210 (220)
T ss_dssp HHHHHTTTCHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHhhccCCHHHHHH
Confidence 999999999999999886 687765444
No 181
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=26.37 E-value=3.8e+02 Score=30.10 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=62.6
Q ss_pred HHHHHHHHh--HHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhh-------hHHHHHhHHH
Q 001255 17 CFRGLLKQL--VGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVIT-------VLVIAESSDN 87 (1113)
Q Consensus 17 ~f~~~Lk~l--~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t-------~kvi~~sa~~ 87 (1113)
.|+..|+.. ..-+.+.+.+||..|-.+-...+...- .. -...++..|-+....+ ..-+-..+-.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~---~~----Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~ 80 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG---AE----GLASLLDILKRLHDEKEETSGNYDSRNQHEIIR 80 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH---HH----HHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH---Hh----HHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 566666653 122344566666666665555544431 11 1222333232222111 2344566778
Q ss_pred HHHHHhhhC-------CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCC
Q 001255 88 CIKTMLRNC-------KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD 134 (1113)
Q Consensus 88 ai~~ii~~~-------~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~ 134 (1113)
||++|..+. ..+..+..|...+ .++++.+|..+.+.|.. +..|+.
T Consensus 81 CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~r~~vleLL~a-lc~~~~ 132 (386)
T 2bnx_A 81 CLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLLSA-LCILPQ 132 (386)
T ss_dssp HHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHHHHHHHHHHHH-HHTCCS
T ss_pred HHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHHHH-HHcCCC
Confidence 888887653 3457788888777 78999999999988865 445654
No 182
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=25.39 E-value=6.3e+02 Score=26.78 Aligned_cols=142 Identities=14% Similarity=0.229 Sum_probs=78.6
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC---CchhhHHhHHHHHHHHHHHhcC------C-----CHHHHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN---DHSIWTKYFNQILTAVLEVLDD------A-----DSSVREVALS 947 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~---~~~~~~~~f~~ll~~Ll~~L~D------~-----n~~vr~~aL~ 947 (1113)
+-+++.+|.+ ++.|..||.+|.+--..- +...|. .||.+-..|.+++.= . .++-+-.||.
T Consensus 5 i~qli~~L~~-----p~~Re~AL~eLsk~Re~~~~La~~LW~-S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 5 IYQWINELSS-----PETRENALLELSKKRESVPDLAPMLWH-SFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHTSS-----TTTHHHHHHHHHHHTTTCTTHHHHHHH-STTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-----chhHHHHHHHHHHhhhccccHHHHHHh-ccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3444545543 357999999987632211 234564 577766666665511 1 1222345788
Q ss_pred HHHHHHHhchh--hh-hhHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhccCC
Q 001255 948 LINEMLKNQKD--VM-EDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTED 1014 (1113)
Q Consensus 948 ~L~~L~~~~~~--~~-~~~~~~~l~~ll~~~~D--s~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s~~ 1014 (1113)
+|+-++.+-.. .| ..++..+|-++|+...- +.+.+|=+....+.++++.-.++ .++|.....|+.+.
T Consensus 79 LlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs 158 (268)
T 2fv2_A 79 LLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS 158 (268)
T ss_dssp HHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 88888875432 22 22344445555554432 23566777777777777664443 25566666666665
Q ss_pred hhHHHHHHHHHHHHH
Q 001255 1015 EKTLVTCINCLTKLV 1029 (1113)
Q Consensus 1015 ~~~~~~al~~L~~li 1029 (1113)
.-.+..|.-.+.+++
T Consensus 159 elSKtvAtfIlqKIL 173 (268)
T 2fv2_A 159 ELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555544
No 183
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.28 E-value=2.1e+02 Score=36.95 Aligned_cols=154 Identities=13% Similarity=0.131 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhc---CCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 001255 898 TSKHGALQQLIKASVA---NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 974 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~---~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~ 974 (1113)
.-|..++..+..+++. .......+....+...|.+.+...+...+..+|..|+.+-. . .-+. .|.++|+.
T Consensus 410 ~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p--~~l~-~l~~~l~~ 482 (1056)
T 1lsh_A 410 ILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P--NSIK-KIQRFLPG 482 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G--GGHH-HHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h--hHHH-HHHHhhcC
Confidence 4566677777776642 11111112345555556666655555555556666655432 1 1122 22223322
Q ss_pred hC----CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhcc--CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHH
Q 001255 975 TK----DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPAL 1048 (1113)
Q Consensus 975 ~~----Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s--~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l 1048 (1113)
.+ +....|+.+|..||+.+... .|..+-+++.+++.+ .....|+.|+.+ |++..|...+ | ..|
T Consensus 483 ~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~e~~EvRiaA~~~---Lm~t~P~~~~---l----~~i 551 (1056)
T 1lsh_A 483 QGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVAIKSELRIRSCIV---FFESKPSVAL---V----SMV 551 (1056)
T ss_dssp SSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTTSCHHHHHHHHHH---HHHTCCCHHH---H----HHH
T ss_pred ccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCCCChHHHHHHHHH---HHHHCcCHHH---H----HHH
Confidence 21 22356889999999998754 677888899999954 455667766653 3333343222 2 223
Q ss_pred HHHh-cCCCHHHHHHHHHHHHH
Q 001255 1049 FEAF-GNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1049 ~~~l-~D~~seVRkaAv~clv~ 1069 (1113)
+..+ .|++..|+....-.|-.
T Consensus 552 a~~l~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 552 AVRLRREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHHHHH
Confidence 3333 35777776655544433
No 184
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=23.25 E-value=9.5e+02 Score=31.51 Aligned_cols=169 Identities=10% Similarity=0.062 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhcCCc-------------hhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH-H
Q 001255 899 SKHGALQQLIKASVANDH-------------SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-V 964 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~-------------~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~-~ 964 (1113)
.|+.|-.-+.+-|+.+-. .+...+|..+|...-..+...++.|+.-+..+...+++.. +.| -
T Consensus 361 ~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~~~q 436 (1323)
T 3s4w_B 361 TKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF----DTYCQ 436 (1323)
T ss_dssp HHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----CHHHH
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----cchhH
Confidence 455555555555555422 2334566776666666677788899999999999999854 344 3
Q ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhhcChhh------HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHH--
Q 001255 965 EIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDPFR------CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE-- 1035 (1113)
Q Consensus 965 ~~~l~~ll~~~~D-s~~~Vr~aa~~~l~~l~~~~~p~~------~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~-- 1035 (1113)
.-++..|+.-.+. +..+ +.+|...+..++.. +|.. .+.-+...+.+=.....+-.+.+|+.++-.-+.+
T Consensus 437 qeVl~~Lv~hi~sg~~~e-Vd~ALdvL~~L~~~-~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~ 514 (1323)
T 3s4w_B 437 QEVVGALVTHVCSGTEAE-VDTALDVLLELIVL-NASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTS 514 (1323)
T ss_dssp HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHH-CHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHhhhcCCCcHH-HHHHHHHHHHHHhc-CHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 4566677764443 3344 44466667666654 4443 3333344444434444444577777776322221
Q ss_pred -HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1036 -ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1036 -~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
.+...+ .=.+-+++..++...++-.+-..|.+..+++.
T Consensus 515 ~~i~ddl---~ivIRKQLs~~~~~~KriGIIGav~~v~~~~~ 553 (1323)
T 3s4w_B 515 NHIQDDM---HLVIRKQLSSTVFKYKLIGIIGAVTMAGIMAE 553 (1323)
T ss_dssp CHHHHHH---HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHhH---HHHHHHHHhCCchhhhhhhHHHHHHHHHHHHH
Confidence 232222 22589999999999999999999999988874
No 185
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=23.13 E-value=65 Score=23.32 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 001255 145 YEDLIRCCVADAMSEVRSTARMCYR 169 (1113)
Q Consensus 145 l~~~i~k~l~Da~~eVR~~AR~a~~ 169 (1113)
|-.++++.-.|+|+++|.+..++|.
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 6778899999999999999999874
No 186
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.09 E-value=8e+02 Score=29.18 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcc--------hHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhC
Q 001255 532 MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP--------FESYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSKTY 602 (1113)
Q Consensus 532 ~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~--------~~~~l~~ll~~ll~klg-D~K~~vr~~a~~~L~~i~e~~ 602 (1113)
...+...|.+.+..++...|+++..+....... +..|.. ++..+..-+. -.-..+|.++..++..+...|
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~-~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~ 397 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLT-VPQGLVKVMTLCPIETLRKKSLAMLQLYINKL 397 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHH-HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhC
Confidence 334555667777778888888877777654421 223322 2233333333 667779999999999999999
Q ss_pred CccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Q 001255 603 SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNK 637 (1113)
Q Consensus 603 ~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~ 637 (1113)
+.+-=+..|...+.+-..|-++.-++.|+.+.+..
T Consensus 398 ~~e~R~~iL~~LL~~~~~~~v~~~lI~~~KdeI~~ 432 (596)
T 4f52_E 398 DSQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDM 432 (596)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 98876666655555557899999999999988775
No 187
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=22.40 E-value=4.8e+02 Score=24.31 Aligned_cols=128 Identities=10% Similarity=0.022 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhhhcCCH-----HHHHHH
Q 001255 47 LLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNA-----VLRARC 121 (1113)
Q Consensus 47 ~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~~~K~~-----~vR~~~ 121 (1113)
+|......+..+.+.+...+..-||....+.+......-. . ..-+..+++..|...+.+=-++ .++...
T Consensus 9 ~v~~sw~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~~~~-~-----~~~q~~~l~~~l~~~v~~ld~~~~l~~~l~~L~ 82 (146)
T 2vhb_A 9 IIKATVPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMGRQ-E-----SLEQPKALAMTVLAAAQNIENLPAILPAVKKIA 82 (146)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGC--------------CCCCCHHHHHHHHHHTGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHChHHHHhcCcchh-h-----hhHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 4444444555555666666666677666666554433110 0 1123335554444333110011 122222
Q ss_pred HHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhChHHHHHHHh
Q 001255 122 CEYALLVLEHWPDAPEIQRSADLYEDLIRCCVA-DAMSEVRSTARMCYRMFAKTWPERSRRLFS 184 (1113)
Q Consensus 122 a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~-Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~ 184 (1113)
..+.. + .-.+. ......+.|..+|...+. +-++++.++-.++|+.+...+-+....+|.
T Consensus 83 ~~H~~--~-gV~p~-~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~~~~~y~ 142 (146)
T 2vhb_A 83 VKHCQ--A-GVAAA-HYPIVGQELLGAIKEVLGDAATDDILDAWGKAYGVIADVFIQVEADLYA 142 (146)
T ss_dssp HHHHH--H-TCCGG-GHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh--c-CCCHH-HHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1 11111 234456666777777665 489999999999999999998888877775
No 188
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=21.56 E-value=5.3e+02 Score=24.54 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=71.6
Q ss_pred HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChh
Q 001255 571 RILPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 649 (1113)
Q Consensus 571 ~ll~~ll~klg-D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~ 649 (1113)
.+|..+-++++ +....-...+..+|.++++..+.+....-- .+--+.+|. + +.+ +-++.......
T Consensus 18 ~fl~~V~~~~~~~~~~~A~~~~raVL~tLrdRL~~~ea~~la-----aqLP~~lr~-~---~~~-----~w~~~~~~~~~ 83 (145)
T 2ysk_A 18 AWLKAIMEELGTEDRHKAYLALRAVLHALRDRLTVEEVAQLA-----AQLPMLVRG-L---YYE-----GWDPTGKPLKE 83 (145)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHH-----TTSCHHHHH-H---HHT-----TCCTTSCCCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----HhCCHHHHH-H---HHh-----cCCCCCCCCCC
Confidence 34455556666 455556667777777778777777533221 121122221 1 111 00111111111
Q ss_pred -hHHHHHHhHccccC---CCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHH
Q 001255 650 -ILKLWLAKLTPLVH---DKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQN 702 (1113)
Q Consensus 650 -~~~~~l~~l~~~~~---d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~ 702 (1113)
....++..+..... +.+.+.+.++..++..|-+|+++..+...+..||.++.+
T Consensus 84 ~~~~eFl~rV~~~~~~~~~~~~~a~~~v~aV~~~L~~~v~~ge~~~v~~~LP~~~~~ 140 (145)
T 2ysk_A 84 RHKEAFLAHVAEELKTPSGPAVDPEAATRAVFKVLSREISQGELEDVLGLLPKELRA 140 (145)
T ss_dssp CSHHHHHHHHHHTSEETTEESSCHHHHHHHHHHHHHHHSCHHHHHHHHHTSCHHHHT
T ss_pred CCHHHHHHHHHHHcCcCCCCcccHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Confidence 35667878887776 567889999999999999999888788888888888754
No 189
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.42 E-value=6.1e+02 Score=27.64 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHh
Q 001255 961 EDSVEIVIEKLLHVT 975 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~ 975 (1113)
.+|...++.++|+..
T Consensus 178 ~~~G~~Vvq~~le~~ 192 (351)
T 3gvo_A 178 HPYGCRVIQRILEHC 192 (351)
T ss_dssp STTHHHHHHHHHHHS
T ss_pred CcHhHHHHHHHHHHC
Confidence 445566666666654
No 190
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.13 E-value=1e+03 Score=29.36 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=31.5
Q ss_pred hhccCChhHHHHHHHHHHHHHHh--hCHHHHHhhhhhHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHhhh
Q 001255 1009 LLVTEDEKTLVTCINCLTKLVGR--LSQEELMAQLPSFLPALFEAFGNQSADVR-KTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1009 ~l~s~~~~~~~~al~~L~~lie~--~~~~~l~~~L~~lip~l~~~l~D~~seVR-kaAv~clv~i~~~lGe 1076 (1113)
.+...+|..-..++.+|..|+.. +....+-+.|..++. .+.++.-+.+| .-.++|++...-.+|.
T Consensus 96 ~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~---~~~e~~~~q~r~D~~v~~vL~~Lp~~G~ 163 (771)
T 1h2v_C 96 SLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVS---VTQEEDVPQVRRDWYVYAFLSSLPWVGK 163 (771)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHH---GGGCSSCCHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHH---hhhhcCCcccchhHHHHHHHHHHHHHHH
Confidence 34456676656667777777654 344444344433322 22233333332 3355555555555553
Done!