Query 001256
Match_columns 1113
No_of_seqs 410 out of 1917
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 100.0 1E-141 5E-146 1311.0 71.9 713 155-1024 9-742 (760)
2 2wp8_J Exosome complex exonucl 100.0 5E-140 2E-144 1317.4 69.2 713 155-1024 226-959 (977)
3 2id0_A Exoribonuclease 2; RNAs 100.0 3E-120 9E-125 1104.6 59.0 611 166-1024 8-628 (644)
4 2r7d_A Ribonuclease II family 100.0 3.3E-91 1.1E-95 820.4 40.4 413 451-1024 20-446 (469)
5 2ckz_B C25, DNA-directed RNA p 98.0 1.1E-06 3.8E-11 93.8 1.7 81 946-1027 72-153 (218)
6 3ayh_B DNA-directed RNA polyme 97.8 5.2E-06 1.8E-10 87.7 2.5 78 946-1025 72-155 (203)
7 4ayb_E DNA-directed RNA polyme 97.6 6.8E-05 2.3E-09 77.5 6.5 71 951-1025 77-147 (180)
8 2c35_B Human RPB7, DNA-directe 97.4 0.00022 7.7E-09 73.1 7.4 72 948-1024 74-147 (172)
9 1go3_E DNA-directed RNA polyme 97.0 0.00076 2.6E-08 70.0 6.6 71 950-1024 76-146 (187)
10 1luz_A Protein K3, protein K2; 96.8 0.00018 6.1E-09 66.2 -0.2 60 950-1024 6-67 (88)
11 1y14_B B16, RPB7, DNA-directed 96.8 0.001 3.6E-08 68.2 5.1 72 946-1024 74-147 (171)
12 2b8k_G B16, DNA-directed RNA p 96.7 0.00084 2.9E-08 71.5 4.2 70 948-1024 76-147 (215)
13 3h0g_G DNA-directed RNA polyme 96.6 0.00012 4.1E-09 75.3 -3.3 74 946-1024 75-148 (172)
14 1kl9_A Eukaryotic translation 96.4 0.0019 6.6E-08 67.1 4.1 64 948-1024 5-72 (182)
15 2a19_A EIF-2- alpha, eukaryoti 96.3 0.002 7E-08 66.4 4.0 64 948-1024 5-72 (175)
16 3bzc_A TEX; helix-turn-helix, 96.3 0.00095 3.3E-08 83.0 1.3 57 954-1024 653-709 (785)
17 2eqs_A ATP-dependent RNA helic 96.2 0.0037 1.3E-07 58.8 4.5 60 953-1024 10-71 (103)
18 2k52_A Uncharacterized protein 96.0 0.0069 2.3E-07 54.3 5.2 53 954-1024 4-56 (80)
19 2cqo_A Nucleolar protein of 40 95.6 0.0058 2E-07 59.1 3.2 59 954-1025 21-79 (119)
20 2k4k_A GSP13, general stress p 95.6 0.018 6.3E-07 56.4 6.7 57 954-1024 6-62 (130)
21 3aev_A Translation initiation 94.6 0.035 1.2E-06 61.2 5.9 63 949-1024 3-68 (275)
22 1q8k_A Eukaryotic translation 94.0 0.017 5.8E-07 64.6 2.1 64 948-1024 3-70 (308)
23 2khi_A 30S ribosomal protein S 93.9 0.049 1.7E-06 52.1 4.8 58 954-1024 29-86 (115)
24 2khj_A 30S ribosomal protein S 93.7 0.026 8.9E-07 53.4 2.4 59 952-1024 28-86 (109)
25 4aid_A Polyribonucleotide nucl 91.2 0.05 1.7E-06 67.2 1.0 59 952-1024 634-692 (726)
26 3cw2_C Translation initiation 89.7 0.11 3.8E-06 56.9 2.0 59 954-1025 10-69 (266)
27 1wi5_A RRP5 protein homolog; S 89.1 0.14 4.7E-06 49.2 1.9 59 954-1024 20-78 (119)
28 1a62_A RHO; transcription term 87.8 0.58 2E-05 45.9 5.4 57 170-228 40-104 (130)
29 3psi_A Transcription elongatio 87.3 0.28 9.5E-06 63.8 3.6 59 954-1025 901-959 (1219)
30 3cdi_A Polynucleotide phosphor 85.3 0.16 5.6E-06 62.8 0.0 60 951-1024 623-682 (723)
31 3psf_A Transcription elongatio 83.4 0.22 7.6E-06 63.7 0.0 59 954-1025 904-962 (1030)
32 3m7n_A Putative uncharacterize 75.6 3.9 0.00013 42.0 6.3 58 956-1026 58-124 (179)
33 1e3p_A Guanosine pentaphosphat 75.0 0.3 1E-05 60.8 -2.7 59 952-1024 664-726 (757)
34 3go5_A Multidomain protein wit 66.1 7.1 0.00024 43.1 6.1 50 954-1024 151-200 (285)
35 2bh8_A 1B11; transcription, mo 61.5 5.6 0.00019 37.1 3.5 36 954-990 60-95 (101)
36 3go5_A Multidomain protein wit 59.4 25 0.00086 38.7 8.9 68 952-1023 3-76 (285)
37 2nn6_I 3'-5' exoribonuclease C 48.6 17 0.00058 38.2 5.1 60 954-1024 80-146 (209)
38 2z0s_A Probable exosome comple 27.9 35 0.0012 36.4 3.4 61 954-1024 65-125 (235)
39 2je6_I RRP4, exosome complex R 27.7 42 0.0014 36.2 4.1 60 954-1024 73-132 (251)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=1.4e-141 Score=1310.98 Aligned_cols=713 Identities=29% Similarity=0.439 Sum_probs=593.4
Q ss_pred CCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCcCCccccCCCCEEEEEEccchhhhhc
Q 001256 155 ARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKM 234 (1113)
Q Consensus 155 ~~k~~F~~hl~~~~v~~gLk~G~l~~G~lrVn~~N~~eAyV~~~g~~~Dv~I~G~~~rNRAl~GDvVaVeLlp~~~W~~~ 234 (1113)
.++.+|+||||+++|++||++|+|++|+||||++|+++|||.+++.+.||||+|+++||||+|||+|+|+|+|..+|..+
T Consensus 9 ~~~~~f~~yl~~~~l~~~~~~g~l~~G~l~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~ 88 (760)
T 2vnu_D 9 FSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAP 88 (760)
T ss_dssp --CCCCCCCCCHHHHHHHHHHTSEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCC
T ss_pred cCCCcCcccCCHHHHHHHHHcCCEEEEEEEEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEecccccccc
Confidence 67889999999999999999999999999999999999999999998999999999999999999999999999999865
Q ss_pred cCCCCCCcccccCCCcccccCCCccccccCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCC
Q 001256 235 KGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPS 314 (1113)
Q Consensus 235 ~~~~~~~~~~e~~~~~~e~~e~~~~~~~~k~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1113)
++.. .++.....+++. .+ ..+.. +++...+ .+. ..
T Consensus 89 ~~~~-----~~~~~~~~~~~~-~~----~~~~~-------------------~~~~~~~---------------~~~-~~ 123 (760)
T 2vnu_D 89 SSIV-----LDSEHFDVNDNP-DI----EAGDD-------------------DDNNESS---------------SNT-TV 123 (760)
T ss_dssp CSSC-----BCTTTCC----------------------------------------------------------------
T ss_pred cccc-----cccccccccccc-cc----ccccc-------------------ccccccc---------------ccc-cc
Confidence 5310 000000000000 00 00000 0000000 000 00
Q ss_pred CCCccccccccccccchhhHhhhheeeccCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCC
Q 001256 315 TSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLS 394 (1113)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1113)
.++.. ......+.... .....++|+|+||+||+|+++ .|||+|..... .+ .
T Consensus 124 ~~~~~---~~~~~~~~~~~--------~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~--------------~~--~ 174 (760)
T 2vnu_D 124 ISDKQ---RRLLAKDAMIA--------QRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV--------------DP--Q 174 (760)
T ss_dssp --------------------------------CBCBEEEEEEEECCCC--EEEEEECGGGC--------------CT--T
T ss_pred ccchh---hhhhhhhhhhc--------cccCCCCceEEEEEEEEECCc--eEEEEEEEccC--------------cc--c
Confidence 00100 00000000000 001235799999999999984 49999983110 00 0
Q ss_pred CCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEEcCCCCChHHHHHH
Q 001256 395 VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINA 474 (1113)
Q Consensus 395 ~~~~~~~~~~P~D~riP~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~Wp~~s~~P~G~Iv~~LG~~gd~~~e~~a 474 (1113)
....+++||+|.|+|+|.|.|++++.+. +.+.+|+|+|++||..+.+|.|+|+++||..+++++|+++
T Consensus 175 ~~~~~~~~~~P~d~ri~~i~i~~~~~~~------------~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~e~~~ 242 (760)
T 2vnu_D 175 SSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEA 242 (760)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTGGG------------GTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHH
T ss_pred cCccceEEEEECCCCCccEEEecccccc------------cCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchhHHHH
Confidence 0112578999999999999998765421 1245899999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCCChhhhccCCCC--CCCCCh----------h-hhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCCe
Q 001256 475 ILYENAICCSGFSPESLSCLPCV--PWEVPQ----------E-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 541 (1113)
Q Consensus 475 IL~e~~i~~~~Fs~~vl~~l~~~--~~~i~~----------~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~ 541 (1113)
||.+|+|+..+||++|++|++.. +|.+++ + +.++|+|||++++|||||++|+||||||||+++++|+
T Consensus 243 il~~~~l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~ 322 (760)
T 2vnu_D 243 LLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGN 322 (760)
T ss_dssp HHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSC
T ss_pred HHHHCCCCCcCCCHHHHHHHHhcccccccccccccccccccccchhcccccccCeEEEEcCCCCCcccceEEEEEcCCCc
Confidence 99999996556999999999998 898773 3 6789999999999999999999999999999999999
Q ss_pred EEEEEEeccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEEEEEEE
Q 001256 542 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGR 621 (1113)
Q Consensus 542 ~~lgVHIADVS~fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d~~f~~ 621 (1113)
|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++||++
T Consensus 323 ~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~ 402 (760)
T 2vnu_D 323 WEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMK 402 (760)
T ss_dssp EEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCHHHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceee
Q 001256 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFL 701 (1113)
Q Consensus 622 SvIrS~~rLTYe~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~ 701 (1113)
|+|||+++|||++||++|++.. ...++.++|+.|++||++||++|+++|+|+|+.|+++|.
T Consensus 403 svI~s~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ 463 (760)
T 2vnu_D 403 SVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVH 463 (760)
T ss_dssp EEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEE
T ss_pred EEEEecceEcHHHHHHHHhCCC-------------------cchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEE
Confidence 9999999999999999998731 124677899999999999999999999999999999999
Q ss_pred cC-CCCCeEEeEecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHHc-CCccCCCChh
Q 001256 702 FD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDTSSSG 779 (1113)
Q Consensus 702 lD-e~g~p~~v~~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~~-G~~l~~ss~~ 779 (1113)
+| ++|.|+++..+++.+||+|||||||+||++||+|+.+++|.|++||+|+.|++++++.|.+++..+ |+.++..+++
T Consensus 464 ld~e~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~ 543 (760)
T 2vnu_D 464 MDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSK 543 (760)
T ss_dssp ECSSSSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHH
T ss_pred EecCCCcEEEEEEcCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHH
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999 9999988899
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHH
Q 001256 780 QFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859 (1113)
Q Consensus 780 ~l~~sL~~i~~~~~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~ 859 (1113)
.|+.+|+++.+ ..++.+..+|..+++|+|++|+|+|+|.+ ++++.+|||||++.|||||||||||+||||||||+++
T Consensus 544 ~l~~~l~~~~~--~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~-~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~ 620 (760)
T 2vnu_D 544 ALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGA 620 (760)
T ss_dssp HHHHHHHTCCB--TTBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CchHHHHHHHHHHHHHhhhCccccccCcC-CCCCCCceecCCCceeccCchHhhhHHHHHHHHHHHH
Confidence 99988887643 24455566777889999999999999875 5689999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001256 860 LEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 939 (1113)
Q Consensus 860 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~ 939 (1113)
|.+++.... ..+.+.|..+|+|||.|++.|+.|+
T Consensus 621 l~~~~~~~~----------------------------------------------~~~~~~l~~~~~~~s~~er~A~~ae 654 (760)
T 2vnu_D 621 IGYEPLSLT----------------------------------------------HRDKNKMDMICRNINRKHRNAQFAG 654 (760)
T ss_dssp TTSSCCCGG----------------------------------------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCccc----------------------------------------------ccCHHHHHHHHHHhhHHHHHHHHHH
Confidence 975421000 0013568899999999999999999
Q ss_pred HHHHHHHHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecC--CcEEEEecccceEEEeeecc----cce
Q 001256 940 DACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE--GLIVEWLETTSTLVLSLCAH----KRS 1013 (1113)
Q Consensus 940 r~s~~l~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~--~~~~e~~~~~~~lv~~~~~~----k~~ 1013 (1113)
|++.++|++.||+.+. .+++|+|++|.++|++|+||++|+||+||+++|. ++||+|++.+++|++. ++ ++.
T Consensus 655 r~~~~~~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~--~~~~~~~~~ 731 (760)
T 2vnu_D 655 RASIEYYVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFV--PTNSDKPRD 731 (760)
T ss_dssp HHHHHHHHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEEC--CTTCSSCEE
T ss_pred HHHHHHHHHHHhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEe--cCCCccCcE
Confidence 9999999999999998 8999999999999999999999999999999997 8999999999999993 43 466
Q ss_pred eecCCCceEEE
Q 001256 1014 FKRGGPGNYRA 1024 (1113)
Q Consensus 1014 ~~~g~~v~~r~ 1024 (1113)
|++||.|+|+.
T Consensus 732 ~~lGD~V~VkV 742 (760)
T 2vnu_D 732 VYVFDKVEVQV 742 (760)
T ss_dssp EETTCEEEEEE
T ss_pred EecCCEEEEEE
Confidence 77776666554
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-140 Score=1317.42 Aligned_cols=713 Identities=29% Similarity=0.436 Sum_probs=596.9
Q ss_pred CCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCcCCccccCCCCEEEEEEccchhhhhc
Q 001256 155 ARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKM 234 (1113)
Q Consensus 155 ~~k~~F~~hl~~~~v~~gLk~G~l~~G~lrVn~~N~~eAyV~~~g~~~Dv~I~G~~~rNRAl~GDvVaVeLlp~~~W~~~ 234 (1113)
+++.+|+||||+++|++||++|+|++|+||||++|+.+|||.+++.+.||||+|+++||||+|||+|+|+|+|+.+|..+
T Consensus 226 ~~~~~f~~yl~~~~l~~~l~~g~l~~G~l~v~~~~~~egfV~~~~~~~DI~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~ 305 (977)
T 2wp8_J 226 FSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAP 305 (977)
T ss_dssp ---CCCCCCCCHHHHHHHHHTTSSEEEEEEECSSBTTEEEECCTTCSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCC
T ss_pred cccCcCcCcCCHHHHHHHHHcCCEEEEEEEEccCCCccEEEEcCCCCCCEEEcChHHhhhCcCCCEEEEEEecccccccc
Confidence 67889999999999999999999999999999999999999999988999999999999999999999999999999865
Q ss_pred cCCCCCCcccccCCCcccccCCCccccccCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCC
Q 001256 235 KGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPS 314 (1113)
Q Consensus 235 ~~~~~~~~~~e~~~~~~e~~e~~~~~~~~k~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1113)
++.. ..++... ..++. |.. ..+ .++++.. . .+. ..
T Consensus 306 ~~~~----~~~~~~~------~~~~~-------~~~---------~~~---~~~~~~~-----------~----~~~-~~ 340 (977)
T 2wp8_J 306 SSIV----LDSEHFD------VNDNP-------DIE---------AGD---DDDNNES-----------S----SNT-TV 340 (977)
T ss_dssp CSCC----BCGGGSS------TTCCC-------CCC---------------------------------------CC-CC
T ss_pred cccc----ccccccc------ccccc-------ccc---------ccc---ccccccc-----------c----ccc-cc
Confidence 4411 0000000 00000 000 000 0000000 0 000 00
Q ss_pred CCCccccccccccccchhhHhhhheeeccCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCC
Q 001256 315 TSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLS 394 (1113)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1113)
.++ .+........... .....++|+|+||+||+|+++ .+||+|..... .. .
T Consensus 341 ~~~--------~~~~~~~~~~~~~---~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~--------------~~--~ 391 (977)
T 2wp8_J 341 ISD--------KQRRLLAKDAMIA---QRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV--------------DP--Q 391 (977)
T ss_dssp CCH--------HHHHHHHHHHHHH---HHCSCCBCBEEEEEEEECCCC--EEEEEECGGGC--------------CT--T
T ss_pred cch--------hhhhhhhhhhhhc---cccCCCCceEEEEEEEEECCC--eEEEEEEEecC--------------cc--c
Confidence 010 0000000000000 011235699999999999985 49999983210 00 0
Q ss_pred CCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEEcCCCCChHHHHHH
Q 001256 395 VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINA 474 (1113)
Q Consensus 395 ~~~~~~~~~~P~D~riP~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~Wp~~s~~P~G~Iv~~LG~~gd~~~e~~a 474 (1113)
-...+++||+|.|+|+|.|.|++++.+. +.+.+|+|+|++||..+.+|.|+|+++||..+++++|+++
T Consensus 392 g~~~~~~~~~P~D~ri~~i~I~~~~~~~------------~~g~~vvv~I~~wp~~~~~p~G~iv~~LG~~~d~~~e~~~ 459 (977)
T 2wp8_J 392 SSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEA 459 (977)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTTTG------------GGGEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHH
T ss_pred CCccceEEEEECCCCCccEEeccccccc------------cCCCEEEEEEeeccCCCCCccEEEEEEeCCCCCcchhHHH
Confidence 0112567999999999999998776532 1245899999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCCChhhhccCCCC--CCCCC----------hh-hhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCCe
Q 001256 475 ILYENAICCSGFSPESLSCLPCV--PWEVP----------QE-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 541 (1113)
Q Consensus 475 IL~e~~i~~~~Fs~~vl~~l~~~--~~~i~----------~~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~ 541 (1113)
||.+|+|+..+||++|++|++.. +|.++ ++ +.++|+|||++++|||||++|+||||||||+++++|+
T Consensus 460 il~~~~l~~~~Fp~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~ 539 (977)
T 2wp8_J 460 LLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGN 539 (977)
T ss_dssp HHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGCEECTTSCCEEEECTTCSCCCEEEEEEECTTSC
T ss_pred HHHHcCCCcccCCHHHHHHHHhcccccccccccccccccccccccccceecccCcEEEECCCCCCcccceEEEEEcCCCc
Confidence 99999996666999999999999 89876 44 7789999999999999999999999999999999999
Q ss_pred EEEEEEeccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEEEEEEE
Q 001256 542 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGR 621 (1113)
Q Consensus 542 ~~lgVHIADVS~fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d~~f~~ 621 (1113)
|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++||++
T Consensus 540 ~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~ 619 (977)
T 2wp8_J 540 WEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMK 619 (977)
T ss_dssp EEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHHhccccccCCCCceEEEEEEEEECCCCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCHHHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceee
Q 001256 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFL 701 (1113)
Q Consensus 622 SvIrS~~rLTYe~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~ 701 (1113)
|+|||+++|||++||++|++.. ...++.++|+.|++||++||++|+++|||+|+.||++|.
T Consensus 620 svIrs~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~Lr~~R~~~Gai~~~~pE~~~~ 680 (977)
T 2wp8_J 620 SVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVH 680 (977)
T ss_dssp EEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSHHHHTT
T ss_pred EEEEecceEcHHHHHHHHhCCC-------------------cchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEE
Confidence 9999999999999999999731 124677899999999999999999999999999999999
Q ss_pred cC-CCCCeEEeEecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHHc-CCccCCCChh
Q 001256 702 FD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDTSSSG 779 (1113)
Q Consensus 702 lD-e~g~p~~v~~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~~-G~~l~~ss~~ 779 (1113)
+| ++|.|+++..+++.+||+|||||||+||++||+|+.+++|.|++||+|+.|++++++.|.+++..+ |+.++..+++
T Consensus 681 ld~e~g~~~~i~~~~~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~~~~~~~G~~l~~~~~~ 760 (977)
T 2wp8_J 681 MDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSK 760 (977)
T ss_dssp SCCTTCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSSHH
T ss_pred eccCCCceEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHccCCCCCCCCHH
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999 9999988999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHH
Q 001256 780 QFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859 (1113)
Q Consensus 780 ~l~~sL~~i~~~~~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~ 859 (1113)
.|+.+|+++.+ ..++.+..+++.+++|+|++|+|||+|.+ ++++.+|||||++.|||||||||||+||||||||+++
T Consensus 761 ~l~~~L~~~~~--~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~-s~~~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L~a~ 837 (977)
T 2wp8_J 761 ALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGA 837 (977)
T ss_dssp HHHHHHHHCCC--SSCTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGSCBTTTTBSSCCCCSCTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CchHHHHHHHHHHHHHhccCceeeccccc-CCCCCCceecCCCCeeccCchHhhHHHHHHHHHHHHH
Confidence 99999887654 24455556777788999999999999875 5689999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001256 860 LEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 939 (1113)
Q Consensus 860 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~ 939 (1113)
|.+++.... ..+.+.|..+|+|||.|++.|+.|+
T Consensus 838 L~~~~~~~~----------------------------------------------~~~~~~l~~i~~~~s~~er~A~~ae 871 (977)
T 2wp8_J 838 IGYEPLSLT----------------------------------------------HRDKNKMDMICRNINRKHRNAQFAG 871 (977)
T ss_dssp TTSSCCCGG----------------------------------------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCccc----------------------------------------------ccCHHHHHHHHHHhCHHHHHHHHHH
Confidence 975421000 0013468899999999999999999
Q ss_pred HHHHHHHHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecC--CcEEEEecccceEEEeeec----ccce
Q 001256 940 DACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE--GLIVEWLETTSTLVLSLCA----HKRS 1013 (1113)
Q Consensus 940 r~s~~l~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~--~~~~e~~~~~~~lv~~~~~----~k~~ 1013 (1113)
|++.++|++.||+.+ |.+++|+|++|.++||+|+||++|+||+||+++|. ++||+|++.+++|+|. + .++.
T Consensus 872 R~~~~~~~~~~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~--~~~g~~~~~ 948 (977)
T 2wp8_J 872 RASIEYYVGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFV--PTNSDKPRD 948 (977)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEEC--CTTCCSCEE
T ss_pred HHHHHHHHhhhhccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEee--cCCCccCcE
Confidence 999999999999999 88999999999999999999999999999999998 8999999999999993 3 2466
Q ss_pred eecCCCceEEE
Q 001256 1014 FKRGGPGNYRA 1024 (1113)
Q Consensus 1014 ~~~g~~v~~r~ 1024 (1113)
|++||.|+|+.
T Consensus 949 ~~lGD~V~VkV 959 (977)
T 2wp8_J 949 VYVFDKVEVQV 959 (977)
T ss_dssp EETTCEEEEEE
T ss_pred EccCCEEEEEE
Confidence 77777666654
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=2.8e-120 Score=1104.61 Aligned_cols=611 Identities=19% Similarity=0.233 Sum_probs=530.2
Q ss_pred HHHHHHHHHcCC-eEEEEEEeccCCceeEEEEeCCcceeEEEeCcCCccccCCCCEEEEEEccchhhhhccCCCCCCccc
Q 001256 166 MEAVNEALEKGD-AFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIV 244 (1113)
Q Consensus 166 ~~~v~~gLk~G~-l~~G~lrVn~~N~~eAyV~~~g~~~Dv~I~G~~~rNRAl~GDvVaVeLlp~~~W~~~~~~~~~~~~~ 244 (1113)
..++.+.|.... ++.|+|+++++. -|||..++ ..||||... ++|+|+|||.|.|++.+.
T Consensus 8 l~~lk~~~~~~~~~~~G~~~~~~~G--fgF~~~d~-~~difi~~~-~~~~a~~GD~V~v~i~~~---------------- 67 (644)
T 2id0_A 8 LAQLKQQLHSQTPRAEGVVKATEKG--FGFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHSE---------------- 67 (644)
T ss_dssp HHHHHHHHHHTSCEEEEEEECCSSS--CEEEECSS-SCEEEECHH-HHTTSCTTCEEEEEEECC----------------
T ss_pred HHHHHHhHHhhCCeEEEEEEEecCC--cEEEEECC-CCCEEECHH-HHhcCCCCCEEEEEEecC----------------
Confidence 456677776665 899999999876 48999987 589999985 999999999999997431
Q ss_pred ccCCCcccccCCCccccccCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCCCCCccccccc
Q 001256 245 EDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSS 324 (1113)
Q Consensus 245 e~~~~~~e~~e~~~~~~~~k~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1113)
T Consensus 68 -------------------------------------------------------------------------------- 67 (644)
T 2id0_A 68 -------------------------------------------------------------------------------- 67 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhHhhhheeeccCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCCCCCCceEEEE
Q 001256 325 SQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLT 404 (1113)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1113)
+.+++|+|++||+|++ ..+||++.. .+ ++.+++
T Consensus 68 ---------------------~~~~eg~v~~iler~~--~~~vg~~~~----------------~~--------~~~~v~ 100 (644)
T 2id0_A 68 ---------------------KERESAEPEELVEPFL--TRFVGKVQG----------------KN--------DRLAIV 100 (644)
T ss_dssp ---------------------SSSCEEEEEEEEECSC--SEEEEEEEE----------------ET--------TEEEEE
T ss_pred ---------------------CCCeEEEEEEEEecCC--CEEEEEEEE----------------eC--------CEEEEE
Confidence 0136899999999986 569999982 22 467899
Q ss_pred eCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCC-cEEEEEEcCCCCChHHHHHHHHHhcCcCC
Q 001256 405 PTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFP-QAHVLHVFGRGGEVEPQINAILYENAICC 483 (1113)
Q Consensus 405 P~D~riP~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~Wp~~s~~P-~G~Iv~~LG~~gd~~~e~~aIL~e~~i~~ 483 (1113)
|+|++++. .|+..+.... ...+++| .+|+|+|++||..+.+| .|+|+++||..+++++|++++|.+|++ +
T Consensus 101 pdd~~~~~-~i~~~~~~~~-~~~~~~g------~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l-~ 171 (644)
T 2id0_A 101 PDHPLLKD-AIPCRAARGL-NHEFKEG------DWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNL-E 171 (644)
T ss_dssp ESSTTCCS-CEECCBCSSC-CCCCCSS------CEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTC-C
T ss_pred ECCCCccc-cccccccccc-cccCCCC------CEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCC-C
Confidence 99999988 7776543211 1112344 48999999999998899 999999999999999999999999999 5
Q ss_pred CCCChhhhccCCCCCCCCChhhhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCCeEEEEEEeccccccccCCCHhhH
Q 001256 484 SGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDI 563 (1113)
Q Consensus 484 ~~Fs~~vl~~l~~~~~~i~~~e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~fV~pgS~LD~ 563 (1113)
.+||+++++++ +++ .++|+|||++++|||||++|+||||||||+++++|+|+||||||||||||+|||+||+
T Consensus 172 ~~fp~~~~~~~-------~~~-~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~ 243 (644)
T 2id0_A 172 KEAPDGVATEM-------LDE-GLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDK 243 (644)
T ss_dssp CSCCCCCCCCC-------CCS-CCCCCCCCSSCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHH
T ss_pred CCCChHHhhcC-------Ccc-cccceeccCCcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHH
Confidence 78998776552 222 3789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEE-EEEEEEEEecccccCHHHHHHHHccC
Q 001256 564 EAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVD-RWIGRTVIRSCCKLSYEHAQDIIDGK 642 (1113)
Q Consensus 564 eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d-~~f~~SvIrS~~rLTYe~vq~iLd~~ 642 (1113)
||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++ ++|++|+|||+++|||++||++|+++
T Consensus 244 eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~ 323 (644)
T 2id0_A 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENT 323 (644)
T ss_dssp HHHHHCBCEEETTEEECSSCHHHHTTTSSCCSSCEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCC
T ss_pred HHHHhCCcEeCCCEEEeCCCHHHhcCcccCCCCCceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999873
Q ss_pred CCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeecCCCCCeEEeEecCCccHHHH
Q 001256 643 FDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFL 722 (1113)
Q Consensus 643 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~lDe~g~p~~v~~~~~~~a~~L 722 (1113)
.. . .| ...++.++|+.|+++|++||++|.++|++.|+.||++|.+|++|.|.++..+++.+||+|
T Consensus 324 ~~-----~----~~------~~~~~~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~~g~~~~i~~~~~~~a~~l 388 (644)
T 2id0_A 324 GD-----W----QP------ESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRI 388 (644)
T ss_dssp SS-----C----CC------SCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCEEEEECTTSCEEEEEECCCCHHHHH
T ss_pred Cc-----c----cc------ccHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCceEEEECCCCCEEEEEEecCCcHHHH
Confidence 20 0 01 235688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHHcCCccCCCC---hhHHHHHHHHHHHhhcCCHHHH
Q 001256 723 FEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSS---SGQFHQSLEQAREKLKDDYVLF 799 (1113)
Q Consensus 723 IEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~~G~~l~~ss---~~~l~~sL~~i~~~~~~~p~~~ 799 (1113)
||||||+||++||+|+.+++ .|++||+|+.|++++++.|.+++..+|+.++..+ ...++..+..+. +.+..
T Consensus 389 IeE~MllAN~~vA~~l~~~~-~~~lyR~h~~p~~~~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~~~~~----~~~~~- 462 (644)
T 2id0_A 389 VEEAMIAANICAARVLRDKL-GFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELD----AQPTG- 462 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SCCCEEEBCCBCTTTHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHH----TSSSS-
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCceeecCCCCCHHHHHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHhc----CChHH-
Confidence 99999999999999999884 7899999999999999999999999999987432 233444444443 33322
Q ss_pred HHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCc
Q 001256 800 DILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHR 879 (1113)
Q Consensus 800 ~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~L~~~~~~~~~~~~~~~~~~~ 879 (1113)
++..+++|+|++|.| ++++.+|||||++.|||||||||||+||||||||+++|.+++.. .
T Consensus 463 -~l~~~l~r~~~~a~y-------s~~~~~HfgLa~~~YthfTSPIRRY~DLivHR~l~a~l~~~~~~-----~------- 522 (644)
T 2id0_A 463 -FLDSRIRRFQSFAEI-------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT-----R------- 522 (644)
T ss_dssp -HHHHHHTTSBCCCEE-------ESSCCCBTTTTBSSCBCCSCTTTBHHHHHHHHHHHHHTTC---------C-------
T ss_pred -HHHHHHHHhcccccc-------cCCCCCchhcCCCceeeeCChhhcchHHHHHHHHHHHHcCCCCC-----c-------
Confidence 456677899999999 35799999999999999999999999999999999999754210 0
Q ss_pred cccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--
Q 001256 880 EGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVL-- 957 (1113)
Q Consensus 880 ~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~r~s~~l~~~~~lk~~~g~-- 957 (1113)
....++.+||++++.|++|+|++.++|++.||+.+.|.
T Consensus 523 ----------------------------------------~~~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~ 562 (644)
T 2id0_A 523 ----------------------------------------PQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDT 562 (644)
T ss_dssp ----------------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCC
T ss_pred ----------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 01246889999999999999999999999999999999
Q ss_pred EEEEEEeeecCcEEEEEEecCCeEEEEEeeecCC--cEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 958 LSEARVLALGPRFMTIYIEKLAIERRIYYDEVEG--LIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 958 ~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~--~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+++|+|++|.++|++|.|+++|+||+||+++|.+ +||+|++.+++|+. +++..|++||.|+++.
T Consensus 563 ~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~---~~~~~~~lGD~V~VkV 628 (644)
T 2id0_A 563 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI---KGETVYKVTDVIDVTI 628 (644)
T ss_dssp CEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEE---TTEEEEETTCEEEEEE
T ss_pred eEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEe---cCCCEeCCCCEEEEEE
Confidence 9999999999999999999999999999999984 89999999999965 6677899999888875
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=3.3e-91 Score=820.40 Aligned_cols=413 Identities=21% Similarity=0.234 Sum_probs=358.8
Q ss_pred CCCCcEEEEEEcCCCCChHHHHHH-------------HHHhcCcCCCCCChhhhccCCCCCCCCChhhh-ccCccCCCce
Q 001256 451 SPFPQAHVLHVFGRGGEVEPQINA-------------ILYENAICCSGFSPESLSCLPCVPWEVPQEEL-LSRKDLRNFC 516 (1113)
Q Consensus 451 s~~P~G~Iv~~LG~~gd~~~e~~a-------------IL~e~~i~~~~Fs~~vl~~l~~~~~~i~~~e~-~~R~DLr~l~ 516 (1113)
+..|.|+|+++||..+++.++++. ++.++++ +..|+ + ++. ++.+. ++|+|||+++
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~l-p~~fp--~---l~~-----~~~~~~~~R~Dlr~l~ 88 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRA-ALNAV--E---LPV-----PDFDPAEERLDLTHLP 88 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTC-CCSCC--C---CCC-----CCCCTTSCCEECTTSC
T ss_pred CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCC-CCCCc--c---cCC-----CCcccccCceecccCC
Confidence 567999999999999999999864 4456788 56888 1 211 12233 6899999999
Q ss_pred EEEEcCCCCCCCCceEEEEEcCCCeEEEEEEeccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCC
Q 001256 517 IFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPG 596 (1113)
Q Consensus 517 vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg 596 (1113)
+|||||++|+||||||||+++++|+|+||||||||||||+|||+||+||++||||||||++++||||+.| +++|||+||
T Consensus 89 ~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~pg 167 (469)
T 2r7d_A 89 TFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGLH 167 (469)
T ss_dssp EEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTSS
T ss_pred EEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CceeEEEEEEEEcCCCCEEEEEEEEEEEecccccCHHHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHH
Q 001256 597 VDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYE 676 (1113)
Q Consensus 597 ~dRlAfSv~~~id~~G~I~d~~f~~SvIrS~~rLTYe~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~ 676 (1113)
++|+||||.|+||++|+|++++|++|+|+|+ +|||++||++|+++ .++|..|++
T Consensus 168 ~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~-------------------------~~~L~~L~~ 221 (469)
T 2r7d_A 168 EVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG-------------------------EEPFVTLAR 221 (469)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT-------------------------CTTHHHHHH
T ss_pred CceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC-------------------------cHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999872 024889999
Q ss_pred HHHHHHHHHhcCCCccccCCCceeecCCCCCeEEeEecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCH
Q 001256 677 VSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNM 756 (1113)
Q Consensus 677 lA~~Lr~~R~~~Gal~ld~pe~~~~lDe~g~p~~v~~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~ 756 (1113)
+|++||++|.++|+++|+.|+.+|.+|++ +..+...++.+||+|||||||+||++||+|+.++ +.|++||+|+.|+.
T Consensus 222 la~~lr~~R~~~Gai~~~~pe~~i~~d~~--~~~i~~~~~~~a~~lIeE~MilAN~~vA~~l~~~-~ip~~yR~h~~p~~ 298 (469)
T 2r7d_A 222 LARASRRLREGEGALSIDLPEVRVKADET--GASVFPLPKPEMRTVVQECMTLAGWGTAIFADDN-EIPLPFATQDYPTR 298 (469)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCEEEEEETT--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEECCCSS
T ss_pred HHHHHHHHHHhCCCcccCCCceEEEECCC--cceEEecCCCcHHHHHHHHHHHHHHHHHHHHHHc-CCCeeEeeCCCCCc
Confidence 99999999999999999999999999977 7888889999999999999999999999999986 78899999999986
Q ss_pred HHHHHHHHHHHHcCCccCCCChhHHHHHHHHHHHhhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCc
Q 001256 757 RKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPV 836 (1113)
Q Consensus 757 ~kl~~l~~~~~~~G~~l~~ss~~~l~~sL~~i~~~~~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~ 836 (1113)
+++ . ... ++..+++|+|++|+|+ +.+.+|||||++.
T Consensus 299 ~~~----------------~-----------------~~~----~~~~~l~r~m~~a~y~-------~~~~~HfgL~~~~ 334 (469)
T 2r7d_A 299 EVA----------------G-----------------DTL----PAMWARRKTLARTRFQ-------PSPGPHHGMGLDL 334 (469)
T ss_dssp CCC----------------C-----------------CSH----HHHHHHHHHCCCEEEE-------SSCCCBTTTTBSC
T ss_pred ccC----------------c-----------------chH----HHHHHHHHhccccccc-------CCCCCchhhCccc
Confidence 553 0 111 1233457999999995 4689999999999
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCC
Q 001256 837 YTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVP 916 (1113)
Q Consensus 837 YTHFTSPIRRYaDLIVHR~L~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp 916 (1113)
|||||||||||+||||||||+++|.+++. |
T Consensus 335 YthfTSPIRRY~DLivHr~L~a~l~~~~~--------------------------~------------------------ 364 (469)
T 2r7d_A 335 YAQATSPMRRYLDLVVHQQLRAFLAGRDP--------------------------L------------------------ 364 (469)
T ss_dssp CCCCSCTTTBHHHHHHHHHHHHHHTTCCC--------------------------C------------------------
T ss_pred eeeECCcccccHHHHHHHHHHHHHcCCCC--------------------------C------------------------
Confidence 99999999999999999999999975310 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEE
Q 001256 917 CADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEW 996 (1113)
Q Consensus 917 ~~~~l~~ia~~~N~r~~~Ar~A~r~s~~l~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~ 996 (1113)
+.+.+..++.+||.+++.|++|||++.++|++.||+++.|++++|+|+.+... +|.||++++..+ +
T Consensus 365 ~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~-----------~glV~v~~l~~d---~ 430 (469)
T 2r7d_A 365 SSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGA-----------QATLLIPDLAFD---V 430 (469)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETT-----------EEEEEEGGGTEE---E
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCc-----------EEEEEECCCCeE---E
Confidence 13457889999999999999999999999999999999999999999765433 455555555432 1
Q ss_pred ecccceEEEeeecccceeecCCCceEEE
Q 001256 997 LETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 997 ~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.++.|++||.|+++.
T Consensus 431 ------------~~~~~~~lGd~V~V~v 446 (469)
T 2r7d_A 431 ------------QVNTPAAPGTALQVQF 446 (469)
T ss_dssp ------------EEECCCCTTCEEEEEE
T ss_pred ------------ecCCcCCCCCEEEEEE
Confidence 1235799999888875
No 5
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.1e-06 Score=93.82 Aligned_cols=81 Identities=7% Similarity=-0.027 Sum_probs=70.1
Q ss_pred HHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEee-ecccceeecCCCceEEE
Q 001256 946 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSL-CAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 946 ~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~-~~~k~~~~~g~~v~~r~ 1024 (1113)
|.+.||+.+.|++++|+|++|.+.||+|.++. .+||.||.+++.+++|+|++.++.+++.. +++++.|++||.|++|.
T Consensus 72 fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 72 FRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred EEEEEecCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEE
Confidence 45668899999999999999999999999976 48999999999999999999999999943 46788999999999987
Q ss_pred eee
Q 001256 1025 LEE 1027 (1113)
Q Consensus 1025 ~~~ 1027 (1113)
...
T Consensus 151 ~~v 153 (218)
T 2ckz_B 151 ERE 153 (218)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 6
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.83 E-value=5.2e-06 Score=87.73 Aligned_cols=78 Identities=5% Similarity=-0.014 Sum_probs=69.2
Q ss_pred HHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEee------ecccceeecCCC
Q 001256 946 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSL------CAHKRSFKRGGP 1019 (1113)
Q Consensus 946 ~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~------~~~k~~~~~g~~ 1019 (1113)
|.+.||+.+.|++++|+|++|.+.|++|.+. .+|+.+|.+++.+++|+|++.++.+++.. +.+++.|+.|+.
T Consensus 72 fk~~~f~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~ 149 (203)
T 3ayh_B 72 FRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEE 149 (203)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCE
T ss_pred EEEEEEccCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCE
Confidence 4456788899999999999999999999883 68999999999999999999999999954 577889999999
Q ss_pred ceEEEe
Q 001256 1020 GNYRAL 1025 (1113)
Q Consensus 1020 v~~r~~ 1025 (1113)
|++|..
T Consensus 150 VrvrV~ 155 (203)
T 3ayh_B 150 IRFQIE 155 (203)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999873
No 7
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=97.59 E-value=6.8e-05 Score=77.49 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=63.6
Q ss_pred HHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEe
Q 001256 951 LKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 1025 (1113)
Q Consensus 951 lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~ 1025 (1113)
++-..|++++|+|+++.+.|++|.+. .++|.||.+++.+++|.|++.++.+++ ++++..++.||.|++|..
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g--~~~~~~~~~Gd~VrvkV~ 147 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFG--EKSKKVIQKGDKVRARVI 147 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEE--TTTCCCCCTTCEEEEEEE
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC--CccceEEeeecCCCccccchhcceEEE--eccCeEECCCCEEEEEEE
Confidence 45567899999999999999888764 589999999999999999999999999 688999999999999873
No 8
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.40 E-value=0.00022 Score=73.11 Aligned_cols=72 Identities=8% Similarity=-0.016 Sum_probs=61.1
Q ss_pred HHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEeccc--ceEEEeeecccceeecCCCceEEE
Q 001256 948 WILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETT--STLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 948 ~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~--~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.+++...|.+++|+|++|.+.|++|.+. .++|+||.++|+ ++|.|++.+ +.+++ +.++..++.||.|++|.
T Consensus 74 ~~~~~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~-~~~~~d~~~~~~~~~~--~~~~~~~~~Gd~V~vkV 147 (172)
T 2c35_B 74 AIVFRPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIP-SEMEFDPNSNPPCYKT--MDEDIVIQQDDEIRLKI 147 (172)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSC-TTEEEESSSSSCEEEE--TTSCSEEETTCEEEEEE
T ss_pred EEEeeCCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCC-CCcEECCCCCccEEEe--CCCCEEECCCCEEEEEE
Confidence 34566778999999999999999999983 578999999995 568899988 67887 56688999999998885
No 9
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=97.01 E-value=0.00076 Score=69.99 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=60.2
Q ss_pred HHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 950 LLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 950 ~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+++...|.+++|+|+++.+.|++|-+. +++|.||.+++.+++++|++.++.+++ ......++.||.|++|.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~--~~eglvhis~l~~~~~~~d~~~~~~~~--~~~~~~~~~Gd~V~vkV 146 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIG--KETGKVLEIGDYVRARI 146 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEE--TTTCCEECTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEc--CccEEEEhHHhCCCcceECCccceEEe--cCCCeEEcCCCEEEEEE
Confidence 345677899999999999999888884 499999999999999999999999998 46678899999988885
No 10
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.81 E-value=0.00018 Score=66.16 Aligned_cols=60 Identities=10% Similarity=-0.041 Sum_probs=49.7
Q ss_pred HHHhccceEEEEEEeeecCcEEEEEEecC-CeEEEEEee-ecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 950 LLKKKEVLLSEARVLALGPRFMTIYIEKL-AIERRIYYD-EVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 950 ~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~-giEg~V~~~-~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
|+..+.|.+++|+|+ |.++|++|.++.+ |+||+||++ ++.++++++.+ ..+ .||.|+++.
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~-------------~~~-~Gd~V~VkV 67 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYR-------------DKL-VGKTVKVKV 67 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHH-------------HHH-TTCEEEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHh-------------HEe-CCCEEEEEE
Confidence 566678999999999 9999999999987 899999999 99887765433 235 788887775
No 11
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=96.77 E-value=0.001 Score=68.15 Aligned_cols=72 Identities=6% Similarity=0.003 Sum_probs=56.7
Q ss_pred HHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccc--eEEEeeecccceeecCCCceEE
Q 001256 946 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTS--TLVLSLCAHKRSFKRGGPGNYR 1023 (1113)
Q Consensus 946 ~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~--~lv~~~~~~k~~~~~g~~v~~r 1023 (1113)
+.+.+++...|.+++|+|+++.+.|++|.+.. ++|+||.++++ ++|.|++..+ .++++ . ..++.||.|++|
T Consensus 74 ~~~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~-~~~~~d~~~~~~~~~~~---~-~~~~~Gd~V~vk 146 (171)
T 1y14_B 74 YRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMP-QDLTFNAGSNPPSYQSS---E-DVITIKSRIRVK 146 (171)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSC-TTCEECC-----CEECS---S-CEECTTCEEEEE
T ss_pred EEEEEccCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCC-CCceECcccCceEEecc---c-eEECCCCEEEEE
Confidence 34445677789999999999999999999964 99999999996 5678988776 56652 2 569999999888
Q ss_pred E
Q 001256 1024 A 1024 (1113)
Q Consensus 1024 ~ 1024 (1113)
.
T Consensus 147 V 147 (171)
T 1y14_B 147 I 147 (171)
T ss_dssp E
T ss_pred E
Confidence 5
No 12
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=96.73 E-value=0.00084 Score=71.50 Aligned_cols=70 Identities=4% Similarity=-0.028 Sum_probs=58.5
Q ss_pred HHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccc--eEEEeeecccceeecCCCceEEE
Q 001256 948 WILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTS--TLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 948 ~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~--~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.+++.+.|++++|+|++|.+.|++|.|.. ++|+||+++|+ ++|.|++..+ .++++ . ..++.||.|++|.
T Consensus 76 ~i~~~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~-d~~~~d~~~~~w~~~~~--~--~~~~~Gd~VrVkV 147 (215)
T 2b8k_G 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMP-QDLTFNAGSNPPSYQSS--E--DVITIKSRIRVKI 147 (215)
T ss_dssp EEEECCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSC-SSCCCBSSCSSCEEECS--S--CEEETTCEEEEEE
T ss_pred hheeccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCC-ccceeccccccceeecc--c--cEECCCCEEEEEE
Confidence 345677889999999999999999999854 89999999995 5788998877 67763 2 6799999998885
No 13
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.59 E-value=0.00012 Score=75.32 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=60.0
Q ss_pred HHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 946 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 946 ~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
|.+.+++...|++++|+|++|.+.|++|.+. .+||+||.++| +++|+|++.+....+ ++++..++.||.|++|.
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l-~~~~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLV-PPDMKFDPTANPPNY--SGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGS-CTTCCCBSSSSSCBE--ESSSCEECSSCCEEEEE
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHC-CCccccCcccccceE--ecCCcEECCCCEEEEEE
Confidence 4455677888999999999999999888874 57899999999 567889985333333 57788999999999886
No 14
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.38 E-value=0.0019 Score=67.06 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=45.4
Q ss_pred HHHHHh---ccceEEEEEEeeecCcEEEEEEecC-CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEE
Q 001256 948 WILLKK---KEVLLSEARVLALGPRFMTIYIEKL-AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYR 1023 (1113)
Q Consensus 948 ~~~lk~---~~g~~~~a~V~~V~~~~f~V~Ip~~-giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r 1023 (1113)
|+|++. +.|.++.|+|++|.++|++|.|.++ |+||+||++++...++. .....++.||.|+++
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~-------------~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 5 CRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIR-------------SINKLIRIGRNECVV 71 (182)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------------------CTTCEEEEE
T ss_pred eEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccC-------------CHHHhcCCCCEEEEE
Confidence 566765 5689999999999999999999755 89999999999866542 223468999988877
Q ss_pred E
Q 001256 1024 A 1024 (1113)
Q Consensus 1024 ~ 1024 (1113)
.
T Consensus 72 V 72 (182)
T 1kl9_A 72 V 72 (182)
T ss_dssp E
T ss_pred E
Confidence 5
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.34 E-value=0.002 Score=66.44 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=46.5
Q ss_pred HHHHHhc---cceEEEEEEeeecCcEEEEEEec-CCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEE
Q 001256 948 WILLKKK---EVLLSEARVLALGPRFMTIYIEK-LAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYR 1023 (1113)
Q Consensus 948 ~~~lk~~---~g~~~~a~V~~V~~~~f~V~Ip~-~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r 1023 (1113)
|+|++++ .|.++.|+|++|.++|++|.|++ -|+||+||++++...++ ......++.||.|+++
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v-------------~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRI-------------RSIQKLIRVGKNDVAV 71 (175)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC---------------------CCCCCCCTTSEEEEE
T ss_pred eEEhhhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCccc-------------CCHHHcCCCCCEEEEE
Confidence 4566665 68999999999999999999975 48999999999976543 2334568999988887
Q ss_pred E
Q 001256 1024 A 1024 (1113)
Q Consensus 1024 ~ 1024 (1113)
.
T Consensus 72 V 72 (175)
T 2a19_A 72 V 72 (175)
T ss_dssp E
T ss_pred E
Confidence 5
No 16
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.28 E-value=0.00095 Score=82.99 Aligned_cols=57 Identities=11% Similarity=-0.063 Sum_probs=45.7
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.|.+++|+|++|.++|++|-| ..+++|+||++++.+. |.++ ....|+.||.|+++.
T Consensus 653 ~vG~iv~G~V~~V~~fGaFV~l-~~~~eGLVhiS~Lsd~-~v~d------------~~~~~~vGd~V~VkV 709 (785)
T 3bzc_A 653 KPGMVLEGVVTNVTNFGAFVDI-GVHQDGLVHISALSEK-FVKD------------PYEVVKAGDIVKVKV 709 (785)
T ss_dssp CTTCBCCCEEEEEETTEEEEEC-SSSSEEEEETTTSCSS-CCSC------------HHHHCCTTCCCCCBE
T ss_pred CCCCEEEEEEEEEecCCeEEEe-CCCcEEEEEHHHcCcc-ccCC------------hhheeCCCCEEEEEE
Confidence 5688999999999999999988 4589999999999863 2222 245699999888775
No 17
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0037 Score=58.82 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=48.6
Q ss_pred hccceEEEEEEeeecCcEEEEEEecC--CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 953 KKEVLLSEARVLALGPRFMTIYIEKL--AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 953 ~~~g~~~~a~V~~V~~~~f~V~Ip~~--giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
.+.|.++.|+|++|.++|++|.|..+ ++||+||++++..+++ .......|+.||.|+++.
T Consensus 10 ~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~------------~~~~~~~~~~Gd~V~VkV 71 (103)
T 2eqs_A 10 PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGR------------VANVADVVSKGQRVKVKV 71 (103)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSC------------CCCHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcc------------cCCcccEeCCCCEEEEEE
Confidence 35688999999999999999999986 9999999999954321 123445799999888875
No 18
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=96.01 E-value=0.0069 Score=54.26 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=44.7
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.|.++.|+|+++.++|++|.|.. +++|+||++++...++ ..++.||.++++.
T Consensus 4 ~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~-----------------~~~~~Gd~V~v~V 56 (80)
T 2k52_A 4 EPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL-----------------ENLNVGDEIIVQA 56 (80)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG-----------------GGCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc-----------------eeeCCCCEEEEEE
Confidence 568899999999999999999977 8999999999875432 3589999888775
No 19
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.59 E-value=0.0058 Score=59.15 Aligned_cols=59 Identities=8% Similarity=-0.091 Sum_probs=48.1
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEe
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 1025 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~ 1025 (1113)
+.|.++.|+|++|.++|++|.|+.++++|+||++++.++++ ......|++||.|+++..
T Consensus 21 ~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~-------------~~~~~~~~~Gd~V~VkV~ 79 (119)
T 2cqo_A 21 ALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRV-------------DKPSEIVDVGDKVWVKLI 79 (119)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCC-------------SCHHHHCCTTCEEEEEEE
T ss_pred CCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccc-------------cChhhcCCCCCEEEEEEE
Confidence 45889999999999999999997777899999999986543 133456999998888753
No 20
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=95.57 E-value=0.018 Score=56.41 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=46.5
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
..|.++.|+|++|.++|++|.|+. |++|+||++++.+.++. .....++.||.|+++.
T Consensus 6 ~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~-------------~~~~~~~vGd~V~vkV 62 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVK-------------DINEHLSVGDEVQVKV 62 (130)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCS-------------CGGGTCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCccccc-------------CccccCCCCCEEEEEE
Confidence 357889999999999999999965 79999999999876531 2245689999888774
No 21
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=94.56 E-value=0.035 Score=61.21 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=48.4
Q ss_pred HHHHhc--cceEEEEEEeeecCcEEEEEEecC-CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 949 ILLKKK--EVLLSEARVLALGPRFMTIYIEKL-AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 949 ~~lk~~--~g~~~~a~V~~V~~~~f~V~Ip~~-giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
.|++.. .|..+.|.|++|.++|++|.|.+| |++|+||++++...++. .-...++.||.|.++.
T Consensus 3 ~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~-------------~~~~~~kvGd~V~vkV 68 (275)
T 3aev_A 3 RKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVR-------------NIRDYLKEGQKVVAKV 68 (275)
T ss_dssp ----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCS-------------CGGGTCCTTCEEEEEE
T ss_pred cccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccccc-------------CHHhccCCCCEEEEEE
Confidence 345554 488999999999999999999986 99999999999866532 1234689999888775
No 22
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=94.04 E-value=0.017 Score=64.61 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=50.7
Q ss_pred HHHHHhc---cceEEEEEEeeecCcEEEEEEecC-CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEE
Q 001256 948 WILLKKK---EVLLSEARVLALGPRFMTIYIEKL-AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYR 1023 (1113)
Q Consensus 948 ~~~lk~~---~g~~~~a~V~~V~~~~f~V~Ip~~-giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r 1023 (1113)
|+|+..+ .|.++.|.|.+|.++|++|.|.+| |++|+||++++...++ ..-...++.||.|.++
T Consensus 3 ~~f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i-------------~~~~~~~kvGd~V~Vk 69 (308)
T 1q8k_A 3 CRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRI-------------RSINKLIRIGRNECVK 69 (308)
T ss_dssp CCSSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSC-------------SCCTTTCSSSCEEEEE
T ss_pred eEehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccc-------------cCHHHhcCCCCEEEEE
Confidence 3455553 689999999999999999999875 8999999999975431 2345668999988887
Q ss_pred E
Q 001256 1024 A 1024 (1113)
Q Consensus 1024 ~ 1024 (1113)
.
T Consensus 70 V 70 (308)
T 1q8k_A 70 V 70 (308)
T ss_dssp E
T ss_pred E
Confidence 5
No 23
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=93.92 E-value=0.049 Score=52.09 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=45.4
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.|.+++|+|++|.++|++|.|.. |++|+||++++..+. . .......++.||.|+++.
T Consensus 29 ~~G~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~-----~-------~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 29 PEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTN-----K-------NIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp CSSCEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSS-----T-------TCSSTTTCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccc-----c-------ccCcccEECCCCEEEEEE
Confidence 568899999999999999988854 799999999985321 0 123456799999888875
No 24
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=93.69 E-value=0.026 Score=53.45 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=47.0
Q ss_pred HhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 952 KKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 952 k~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
.-+.|.++.|+|++|.++|++|.|.. |++|+||.+++.+.++ ......|+.||.|+++.
T Consensus 28 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~-------------~~~~~~~~vGd~V~v~V 86 (109)
T 2khj_A 28 LNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRV-------------EDATLVLSVGDEVEAKF 86 (109)
T ss_dssp TCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSS-------------SSGGGSCCTTCEEEEEE
T ss_pred cCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccc-------------cChhhccCCCCEEEEEE
Confidence 34568899999999999999888865 8999999999876542 13345689999888775
No 25
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=91.23 E-value=0.05 Score=67.22 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 952 KKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 952 k~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+-+.|.+++|+|++|.++|++|.|.. |++|+||++++.+++++ .....++.||.|+++.
T Consensus 634 ~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~-------------~~~d~~kvGD~V~VkV 692 (726)
T 4aid_A 634 EAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVA-------------KPSDVLKEGQMVKVKL 692 (726)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCccccc-------------CccccCCCCCEEEEEE
Confidence 44668999999999999888888764 79999999999876553 2234689999888875
No 26
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=89.69 E-value=0.11 Score=56.89 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=47.8
Q ss_pred ccceEEEEEEeeecCcEEEEEEecC-CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEe
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKL-AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 1025 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~-giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~ 1025 (1113)
+.|..+.|+|.+|.++|++|.|.+| |++|+||++++.++++ ......++.||.|.++..
T Consensus 10 ~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v-------------~~~~~~~~vGd~V~VkVi 69 (266)
T 3cw2_C 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWV-------------KNIRDVLKENRKVIVKVI 69 (266)
T ss_dssp CTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSC-------------CCHHHHSCTTCEEEEEEC
T ss_pred CCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccc-------------cCHHHhCcCCCEEEEEEE
Confidence 3578999999999999999999875 8999999999976543 123456899998888753
No 27
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=89.14 E-value=0.14 Score=49.18 Aligned_cols=59 Identities=14% Similarity=-0.049 Sum_probs=42.9
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.|.++.|+|.+|.++|++|.|...++++.++.+.. ++|+.|++ .+..|+.||.|+++.
T Consensus 20 ~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~-~~~~~~~~-----------~~~~~~~Gd~V~vkV 78 (119)
T 1wi5_A 20 KPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKA-QEYIRQKN-----------KGAKLKVGQYLNCIV 78 (119)
T ss_dssp CTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHH-HHHHHHHS-----------SSCCCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecc-cccccccC-----------ccCEeCCCCEEEEEE
Confidence 468899999999999999999874467766555543 44544433 245689999888875
No 28
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=87.82 E-value=0.58 Score=45.93 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHHcCCe--EEEEEEeccCCceeEEEEeCC-----cceeEEEeCc-CCccccCCCCEEEEEEccc
Q 001256 170 NEALEKGDA--FKALYRVNAHNRLEAYCKIEG-----VQTDVLITGI-AAQNRAVEGDFVLIKVDRL 228 (1113)
Q Consensus 170 ~~gLk~G~l--~~G~lrVn~~N~~eAyV~~~g-----~~~Dv~I~G~-~~rNRAl~GDvVaVeLlp~ 228 (1113)
.+..++|.+ +.|+|.|.+..+ ||+..++ -+.||||.-. ..|..+.+||+|.+++-|.
T Consensus 40 ~~~~~~~~~~~~~Gvlei~~dG~--GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr~~ 104 (130)
T 1a62_A 40 KQHAKSGEDIFGDGVLEILQDGF--GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 (130)
T ss_dssp HHHHHTTCCEEEEEEEEECTTSC--EEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEECC
T ss_pred HHHHhcCCeEEEEEEEEEcCCCe--EEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEeCC
Confidence 334455654 799999998766 8999983 3789999966 3345899999999998664
No 29
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=87.28 E-value=0.28 Score=63.83 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=47.4
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEe
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 1025 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~ 1025 (1113)
+.|.++.|+|++|.++|++|-| ..|++|+||++++.+.+|..+. ...++.||.|+++..
T Consensus 901 ~~G~iv~G~V~~V~~fGaFV~L-~~gveGLVHiSelsd~~~v~~p------------~~v~kvGd~V~vkVl 959 (1219)
T 3psi_A 901 FKGSIIPVRVERFWHNDIICTT-NSEVECVVNAQRHAGAQLRRPA------------NEIYEIGKTYPAKVI 959 (1219)
T ss_dssp CTTCEEEEEEEEECSSCEEEEC-TTSCEEEECTTSSSSTTSCSCS------------TTTSCTTCEEEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEe-CCCceEEEEHHHcCCCcccCCH------------HHcCCCCCEEEEEEE
Confidence 3588999999999999988887 6799999999999887532222 246899998888753
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=85.34 E-value=0.16 Score=62.79 Aligned_cols=60 Identities=8% Similarity=-0.070 Sum_probs=0.0
Q ss_pred HHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 951 LKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 951 lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
.+...|.+++|+|+++.++|++|.|.. |++|+||++++.++++ .+....++.||.|+++.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v-------------~~~~~~~~vGd~V~VkV 682 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRV-------------EKVTDYLQMGQEVPVKV 682 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccc-------------cCcccccCCCCEEEEEE
Confidence 345678999999999999998888754 7999999999976543 12334689999888875
No 31
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=83.43 E-value=0.22 Score=63.71 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEe
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRAL 1025 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~ 1025 (1113)
+.|.++.|+|++|.++|++|-| ..|++|+||++++.+.+|..+. ...++.||.|++++.
T Consensus 904 ~~G~iv~G~V~~V~~fGaFV~L-~~gveGLVHiSelsd~~~v~~~------------~~v~kvGd~V~vkVl 962 (1030)
T 3psf_A 904 FKGSIIPVRVERFWHNDIICTT-NSEVECVVNAQRHAGAQLRRPA------------NEIYEIGKTYPAKVI 962 (1030)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCCCEEEEEEEEEccCeEEEEe-CCCcEEEEEHHHcCCCcccCCH------------HHcCCCCCEEEEEEE
Confidence 3588899999999998888877 5699999999999887643332 245889998888753
No 32
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=75.57 E-value=3.9 Score=42.00 Aligned_cols=58 Identities=12% Similarity=-0.080 Sum_probs=46.6
Q ss_pred ceEEEEEEeeecCcEEEEEEecC---------CeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEEee
Q 001256 956 VLLSEARVLALGPRFMTIYIEKL---------AIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALE 1026 (1113)
Q Consensus 956 g~~~~a~V~~V~~~~f~V~Ip~~---------giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~~~ 1026 (1113)
|.+..|.|++|.+++++|-|... +++|.||++++...+. ..-...++.||.|..+..+
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~-------------~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV-------------KEISEAVGYLDILKARVIG 124 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC-------------SSGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchh-------------hCHhhcCCCCCEEEEEEEC
Confidence 78899999999999999999875 8999999999875421 1334568889988777654
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=74.98 E-value=0.3 Score=60.80 Aligned_cols=59 Identities=7% Similarity=-0.109 Sum_probs=27.7
Q ss_pred HhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeec----CCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 952 KKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEV----EGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 952 k~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l----~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+-..|.++.|+|.++.++|++|.|.. |++|+||++++ .+.++ .+....++.||.|+++.
T Consensus 664 ~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv-------------~~~~~~~~vGd~V~VkV 726 (757)
T 1e3p_A 664 SPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRV-------------ENVEDVLGVGQKVQVEI 726 (757)
T ss_dssp ---------CBEEECC-CSCEECCC----CCCCC--------------------------------CCSSCBCCCCC
T ss_pred hcccccEEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcc-------------cCcccccCCCCEEEEEE
Confidence 34568899999999999998887743 89999999999 55443 12334689999888875
No 34
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=66.10 E-value=7.1 Score=43.06 Aligned_cols=50 Identities=16% Similarity=-0.056 Sum_probs=40.9
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
..|...+|+|..+.+.|++|++-+-|++|+||.+++.. .++.||.++++.
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~---------------------~l~~Gd~v~~~V 200 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA---------------------EPRLGQVLDARV 200 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS---------------------CCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc---------------------cCCCCCEEEEEE
Confidence 35788999999999999999656678999999999852 367888777664
No 35
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=61.49 E-value=5.6 Score=37.06 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=31.0
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecC
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE 990 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~ 990 (1113)
..|+..++.|..+.++|++|.|+. ++||+||++++.
T Consensus 60 ~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~ 95 (101)
T 2bh8_A 60 QQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDIS 95 (101)
T ss_dssp CTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCc
Confidence 457889999999999888887754 899999999875
No 36
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=59.42 E-value=25 Score=38.68 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=51.0
Q ss_pred HhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecC---CcEE---EEecccceEEEeeecccceeecCCCceEE
Q 001256 952 KKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE---GLIV---EWLETTSTLVLSLCAHKRSFKRGGPGNYR 1023 (1113)
Q Consensus 952 k~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~---~~~~---e~~~~~~~lv~~~~~~k~~~~~g~~v~~r 1023 (1113)
+...|...+|.|+.+.++|++|-+. |.|+++|.++++ |+.+ -|.+....++.. ..++.+..|+.+..+
T Consensus 3 ~~~~G~~v~g~V~~~~~~G~fv~~~--g~egllp~se~~~~vGdevev~v~~d~~~r~iat--~~~p~~~~G~~~~g~ 76 (285)
T 3go5_A 3 NTNLASFIVGLIIDENDRFYFVQKD--GQTYALAKEEGQHTVGDTVKGFAYTDMKQKLRLT--TLEVTATQDQFGWGR 76 (285)
T ss_dssp CTTTTEEEEEEEEEECSSEEEEEET--TEEEEEEGGGCCCCTTSEEEEEEEECTTSCEEEE--CSCCCSCSSSCEEEE
T ss_pred cccCCCEEEEEEEEEECCEEEEEcC--CeEEEEEHHHCccccCCEEEEEEEECCCCCEEEe--cccccccCCCEEEEE
Confidence 3456889999999999999888873 999999999874 4543 355666778773 556678888865433
No 37
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=48.60 E-value=17 Score=38.20 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.7
Q ss_pred ccceEEEEEEeeecCcEEEEEEec-------CCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEK-------LAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~-------~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
..|.+..|.|++|.+++++|-|.. .+++|.||.+++.....+.. .-...++.||.|+.+.
T Consensus 80 ~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~-----------~~~~~l~~GD~V~akV 146 (209)
T 2nn6_I 80 DVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKV-----------EIYKSFRPGDIVLAKV 146 (209)
T ss_dssp CTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCC-----------CGGGTCCSSSEEEEEE
T ss_pred CCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccccccccc-----------chhhhcCCCCEEEEEE
Confidence 457889999999999999999852 47899999998764322100 1233478888776654
No 38
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=27.89 E-value=35 Score=36.40 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=43.2
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
+.|.+..|+|+++.+++++|-|.. +.+|.||.+++.+...+ .. ...-+..++.||.|..|.
T Consensus 65 ~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~--~~-------~~~~~~~l~~GD~V~a~V 125 (235)
T 2z0s_A 65 QAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFN--PA-------VDDMQSLLKVGDYIKAKV 125 (235)
T ss_dssp CTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCC--TT-------TTCCTTSSCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccc--cc-------hhhHhhcCCCCCEEEEEE
Confidence 346788999999999999998753 68999999998762110 00 012234689999887664
No 39
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=27.66 E-value=42 Score=36.22 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=43.4
Q ss_pred ccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecCCcEEEEecccceEEEeeecccceeecCCCceEEE
Q 001256 954 KEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA 1024 (1113)
Q Consensus 954 ~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~v~~r~ 1024 (1113)
..|.+..|+|+++.+++++|-|.. +.+|.||++++.+.+. +. + ..-...++.||.|..|.
T Consensus 73 ~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~---~~------~-~~~~~~l~vGD~V~arV 132 (251)
T 2je6_I 73 KINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSI---NV------G-EDLRRYLDVGDYVIARI 132 (251)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCC---CT------T-CCCSSSCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCcc---cc------c-cchhhcCCCCCEEEEEE
Confidence 347788999999999998888753 6899999999876321 00 0 12234688999887664
Done!