Query 001257
Match_columns 1113
No_of_seqs 153 out of 225
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 20:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.8 1.2E-15 2.7E-20 164.5 32.4 206 662-881 8-235 (294)
2 COG1340 Uncharacterized archae 98.9 4.9E-06 1.1E-10 91.3 33.4 70 818-887 158-227 (294)
3 PHA02562 46 endonuclease subun 98.4 0.00039 8.4E-09 79.8 29.4 74 805-878 331-404 (562)
4 PRK03918 chromosome segregatio 98.3 0.00083 1.8E-08 81.2 33.3 30 664-693 456-485 (880)
5 TIGR02169 SMC_prok_A chromosom 98.3 0.0011 2.4E-08 81.2 33.5 33 664-696 678-710 (1164)
6 TIGR02169 SMC_prok_A chromosom 98.3 0.00081 1.7E-08 82.4 31.1 30 664-693 685-714 (1164)
7 TIGR02168 SMC_prok_B chromosom 98.2 0.0023 5E-08 78.0 33.4 53 664-716 674-726 (1179)
8 PHA02562 46 endonuclease subun 98.2 0.0063 1.4E-07 70.1 33.8 26 666-691 173-198 (562)
9 TIGR02168 SMC_prok_B chromosom 98.2 0.0032 6.9E-08 76.8 32.8 58 663-720 680-737 (1179)
10 COG1196 Smc Chromosome segrega 98.1 0.0025 5.5E-08 80.6 32.8 108 806-915 809-916 (1163)
11 PRK02224 chromosome segregatio 98.1 0.0058 1.3E-07 74.4 34.6 41 850-890 409-449 (880)
12 PRK11637 AmiB activator; Provi 98.1 0.0034 7.4E-08 71.4 30.6 68 663-730 43-110 (428)
13 COG1196 Smc Chromosome segrega 98.1 0.0039 8.6E-08 79.0 33.4 92 799-890 392-483 (1163)
14 KOG0161 Myosin class II heavy 98.1 0.0026 5.5E-08 83.7 32.3 171 741-914 1008-1199(1930)
15 PF07888 CALCOCO1: Calcium bin 98.1 0.0033 7.3E-08 74.4 30.4 210 665-885 141-364 (546)
16 PRK03918 chromosome segregatio 98.0 0.0084 1.8E-07 72.7 33.2 19 664-682 463-481 (880)
17 PF00261 Tropomyosin: Tropomyo 98.0 0.0011 2.5E-08 70.2 22.6 219 667-887 1-224 (237)
18 TIGR00606 rad50 rad50. This fa 98.0 0.0083 1.8E-07 76.9 34.3 107 739-848 822-932 (1311)
19 PRK11637 AmiB activator; Provi 98.0 0.0049 1.1E-07 70.1 28.7 72 661-732 48-119 (428)
20 PRK02224 chromosome segregatio 98.0 0.012 2.7E-07 71.6 33.1 51 663-713 345-395 (880)
21 KOG0964 Structural maintenance 98.0 0.0051 1.1E-07 76.1 29.2 171 740-923 357-542 (1200)
22 COG1579 Zn-ribbon protein, pos 97.9 0.0027 5.9E-08 68.7 23.5 164 692-881 21-184 (239)
23 KOG0964 Structural maintenance 97.9 0.0091 2E-07 74.0 29.8 245 663-927 681-932 (1200)
24 TIGR00606 rad50 rad50. This fa 97.9 0.017 3.6E-07 74.3 33.4 40 661-700 823-862 (1311)
25 KOG4673 Transcription factor T 97.8 0.19 4.1E-06 61.2 40.4 207 696-941 403-627 (961)
26 KOG0996 Structural maintenance 97.7 0.023 5.1E-07 71.6 29.2 34 442-480 170-203 (1293)
27 TIGR03185 DNA_S_dndD DNA sulfu 97.7 0.12 2.7E-06 62.0 33.8 75 804-878 398-474 (650)
28 PRK04778 septation ring format 97.6 0.043 9.3E-07 65.1 28.7 226 660-888 165-432 (569)
29 PRK01156 chromosome segregatio 97.6 0.12 2.6E-06 63.8 33.3 30 664-693 473-502 (895)
30 PRK04778 septation ring format 97.6 0.12 2.5E-06 61.6 32.0 225 663-889 82-353 (569)
31 KOG0250 DNA repair protein RAD 97.6 0.13 2.9E-06 64.9 33.4 139 799-946 360-499 (1074)
32 PRK01156 chromosome segregatio 97.6 0.12 2.7E-06 63.6 32.7 31 671-701 473-503 (895)
33 PF00038 Filament: Intermediat 97.6 0.19 4.2E-06 54.5 32.4 64 663-726 50-113 (312)
34 PF05667 DUF812: Protein of un 97.5 0.12 2.6E-06 62.4 31.3 35 806-840 493-527 (594)
35 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.17 3.7E-06 60.9 32.7 49 662-710 204-252 (650)
36 KOG0250 DNA repair protein RAD 97.5 0.051 1.1E-06 68.4 28.8 145 660-807 654-800 (1074)
37 PTZ00121 MAEBL; Provisional 97.5 0.072 1.6E-06 68.5 29.4 24 757-780 1239-1262(2084)
38 KOG0996 Structural maintenance 97.5 0.11 2.3E-06 66.1 30.7 33 848-880 551-583 (1293)
39 PF07888 CALCOCO1: Calcium bin 97.5 0.16 3.5E-06 60.7 30.7 44 668-711 151-194 (546)
40 KOG0161 Myosin class II heavy 97.4 0.17 3.6E-06 67.7 32.6 84 801-884 1052-1135(1930)
41 PF10174 Cast: RIM-binding pro 97.4 0.19 4.1E-06 62.4 30.9 233 686-925 327-590 (775)
42 KOG0979 Structural maintenance 97.3 0.073 1.6E-06 66.7 25.4 219 648-887 113-352 (1072)
43 PF12128 DUF3584: Protein of u 97.3 0.45 9.8E-06 61.3 33.4 73 661-733 601-673 (1201)
44 PF12128 DUF3584: Protein of u 97.3 0.83 1.8E-05 59.0 35.7 36 681-716 306-341 (1201)
45 KOG1029 Endocytic adaptor prot 97.2 0.062 1.3E-06 65.8 23.7 13 694-706 415-427 (1118)
46 COG4942 Membrane-bound metallo 97.2 0.6 1.3E-05 54.6 30.1 66 662-727 33-98 (420)
47 PF00038 Filament: Intermediat 97.1 0.47 1E-05 51.5 27.6 11 746-756 142-152 (312)
48 KOG0933 Structural maintenance 97.1 0.23 4.9E-06 62.6 27.4 77 801-877 840-916 (1174)
49 PF06160 EzrA: Septation ring 97.1 0.81 1.7E-05 54.8 30.7 225 663-889 78-349 (560)
50 KOG0612 Rho-associated, coiled 97.0 1.6 3.4E-05 56.4 33.7 101 668-770 466-567 (1317)
51 PF06160 EzrA: Septation ring 97.0 0.51 1.1E-05 56.4 28.6 53 664-716 98-150 (560)
52 KOG4674 Uncharacterized conser 97.0 1.4 3.1E-05 58.9 34.4 190 758-950 1302-1523(1822)
53 KOG0977 Nuclear envelope prote 97.0 0.92 2E-05 54.6 30.3 36 674-709 42-77 (546)
54 PRK04863 mukB cell division pr 97.0 0.5 1.1E-05 62.3 30.5 73 654-726 773-875 (1486)
55 TIGR02680 conserved hypothetic 97.0 0.6 1.3E-05 61.1 30.9 38 666-703 741-778 (1353)
56 KOG4673 Transcription factor T 96.9 0.52 1.1E-05 57.7 27.5 36 660-695 402-437 (961)
57 PRK04863 mukB cell division pr 96.9 2.5 5.4E-05 56.3 35.8 152 739-890 435-619 (1486)
58 COG1579 Zn-ribbon protein, pos 96.9 0.3 6.4E-06 53.5 23.2 66 668-733 11-76 (239)
59 PF09726 Macoilin: Transmembra 96.9 0.3 6.4E-06 60.1 25.6 140 686-835 430-576 (697)
60 PF05701 WEMBL: Weak chloropla 96.9 0.97 2.1E-05 53.7 29.0 57 801-857 306-362 (522)
61 PF15070 GOLGA2L5: Putative go 96.8 2 4.4E-05 52.5 32.7 37 844-880 207-243 (617)
62 COG4942 Membrane-bound metallo 96.8 1.5 3.3E-05 51.4 29.4 34 664-697 42-75 (420)
63 KOG0933 Structural maintenance 96.8 1 2.2E-05 57.2 28.9 17 897-913 878-894 (1174)
64 PF08317 Spc7: Spc7 kinetochor 96.8 0.9 1.9E-05 50.8 26.3 50 660-709 68-129 (325)
65 KOG0977 Nuclear envelope prote 96.7 0.29 6.4E-06 58.7 23.6 45 804-848 296-340 (546)
66 KOG4674 Uncharacterized conser 96.7 1.7 3.7E-05 58.2 31.9 64 667-730 52-115 (1822)
67 KOG0018 Structural maintenance 96.7 0.41 8.9E-06 60.7 25.3 90 798-887 403-492 (1141)
68 COG0419 SbcC ATPase involved i 96.7 2.8 6E-05 52.7 32.7 42 740-782 601-642 (908)
69 KOG0971 Microtubule-associated 96.7 0.4 8.6E-06 60.0 24.4 68 834-902 477-545 (1243)
70 PRK09039 hypothetical protein; 96.7 0.47 1E-05 53.7 23.6 52 665-716 44-95 (343)
71 PF09789 DUF2353: Uncharacteri 96.6 1.6 3.5E-05 49.7 27.0 116 665-782 4-145 (319)
72 KOG0612 Rho-associated, coiled 96.5 2.9 6.2E-05 54.2 30.9 39 387-425 243-281 (1317)
73 PTZ00121 MAEBL; Provisional 96.5 4.9 0.00011 53.1 32.7 13 462-474 908-920 (2084)
74 KOG1029 Endocytic adaptor prot 96.5 3 6.6E-05 52.1 29.4 65 801-865 448-512 (1118)
75 KOG0979 Structural maintenance 96.4 2.8 6.1E-05 53.5 29.7 47 456-512 17-64 (1072)
76 PF15070 GOLGA2L5: Putative go 96.4 1.8 3.8E-05 53.0 27.4 49 846-894 223-278 (617)
77 PF00261 Tropomyosin: Tropomyo 96.4 1.1 2.4E-05 48.0 23.2 35 666-700 14-48 (237)
78 TIGR00634 recN DNA repair prot 96.3 1.4 3E-05 52.5 25.6 30 861-890 347-376 (563)
79 KOG0962 DNA repair protein RAD 96.3 1.6 3.5E-05 56.8 27.2 192 740-946 796-991 (1294)
80 COG4372 Uncharacterized protei 96.3 3.4 7.4E-05 48.4 31.5 91 806-897 212-302 (499)
81 PF15619 Lebercilin: Ciliary p 96.2 2.2 4.7E-05 45.4 25.1 89 666-756 11-99 (194)
82 PRK09039 hypothetical protein; 96.2 0.81 1.8E-05 51.9 21.9 69 804-872 116-184 (343)
83 PF05701 WEMBL: Weak chloropla 96.2 4.3 9.4E-05 48.5 31.2 71 804-874 281-351 (522)
84 COG5185 HEC1 Protein involved 96.2 2.9 6.3E-05 49.9 26.3 118 662-779 332-503 (622)
85 KOG0994 Extracellular matrix g 96.2 3.6 7.8E-05 53.2 28.5 99 673-780 1421-1521(1758)
86 PF05667 DUF812: Protein of un 96.1 1.6 3.5E-05 53.1 25.2 30 836-865 509-538 (594)
87 PF09728 Taxilin: Myosin-like 96.1 3.2 7E-05 46.7 32.1 71 812-882 203-273 (309)
88 TIGR01843 type_I_hlyD type I s 96.1 2.4 5.1E-05 47.1 24.4 23 661-683 75-97 (423)
89 smart00787 Spc7 Spc7 kinetocho 96.1 3.6 7.7E-05 46.6 26.0 50 660-709 63-124 (312)
90 TIGR03007 pepcterm_ChnLen poly 96.0 1.4 3.1E-05 51.0 23.1 30 702-731 204-233 (498)
91 PF09728 Taxilin: Myosin-like 96.0 2.5 5.5E-05 47.5 24.3 84 779-865 215-298 (309)
92 PF10174 Cast: RIM-binding pro 95.9 7.8 0.00017 48.8 32.8 31 664-694 132-162 (775)
93 TIGR02680 conserved hypothetic 95.8 5.9 0.00013 52.3 30.0 40 661-700 743-782 (1353)
94 PF12718 Tropomyosin_1: Tropom 95.7 1.2 2.6E-05 45.1 18.4 43 690-732 2-44 (143)
95 PF13514 AAA_27: AAA domain 95.6 11 0.00024 48.6 30.6 11 108-118 112-122 (1111)
96 KOG0995 Centromere-associated 95.6 8.2 0.00018 47.0 31.0 40 742-781 311-350 (581)
97 KOG0018 Structural maintenance 95.5 7.9 0.00017 49.9 28.0 69 663-735 655-723 (1141)
98 KOG0976 Rho/Rac1-interacting s 95.5 10 0.00023 47.8 31.3 75 805-879 331-405 (1265)
99 KOG0976 Rho/Rac1-interacting s 95.5 11 0.00023 47.7 31.0 65 661-725 93-157 (1265)
100 TIGR01000 bacteriocin_acc bact 95.4 3.9 8.5E-05 47.5 23.8 32 661-692 91-122 (457)
101 COG0419 SbcC ATPase involved i 95.4 11 0.00024 47.5 34.2 9 945-953 456-464 (908)
102 COG4477 EzrA Negative regulato 95.4 8.4 0.00018 46.7 26.3 62 810-871 353-414 (570)
103 PF08317 Spc7: Spc7 kinetochor 95.4 6.3 0.00014 44.3 26.7 17 664-680 79-95 (325)
104 PF10168 Nup88: Nuclear pore c 95.2 4 8.6E-05 50.8 24.2 101 666-779 542-648 (717)
105 KOG0946 ER-Golgi vesicle-tethe 95.2 1.6 3.4E-05 54.6 20.3 71 666-736 649-719 (970)
106 PF13166 AAA_13: AAA domain 95.2 10 0.00022 45.8 28.8 12 660-671 265-276 (712)
107 PF12718 Tropomyosin_1: Tropom 95.1 2.3 4.9E-05 43.2 18.2 53 663-715 10-62 (143)
108 COG3883 Uncharacterized protei 95.1 7.5 0.00016 43.6 27.7 52 669-720 40-91 (265)
109 PF13949 ALIX_LYPXL_bnd: ALIX 94.9 6.6 0.00014 42.4 31.3 31 846-877 241-271 (296)
110 COG3883 Uncharacterized protei 94.9 8.2 0.00018 43.3 25.3 38 669-706 33-70 (265)
111 PRK10869 recombination and rep 94.9 7.6 0.00016 46.8 24.6 30 861-890 342-371 (553)
112 PF04849 HAP1_N: HAP1 N-termin 94.8 9.4 0.0002 43.6 27.9 78 810-887 226-303 (306)
113 TIGR03007 pepcterm_ChnLen poly 94.7 3.6 7.8E-05 47.7 20.9 38 743-780 251-292 (498)
114 PF12252 SidE: Dot/Icm substra 94.7 3.5 7.7E-05 52.9 21.5 44 862-905 1300-1345(1439)
115 TIGR01005 eps_transp_fam exopo 94.5 7.7 0.00017 47.7 23.9 66 650-716 154-222 (754)
116 KOG1850 Myosin-like coiled-coi 94.5 12 0.00026 43.2 25.9 117 766-895 207-331 (391)
117 KOG4809 Rab6 GTPase-interactin 94.5 16 0.00035 44.6 25.5 13 902-914 440-452 (654)
118 PF13851 GAS: Growth-arrest sp 94.4 8.3 0.00018 41.1 21.3 100 667-782 27-126 (201)
119 PF04912 Dynamitin: Dynamitin 94.4 10 0.00022 43.5 23.3 70 739-820 209-284 (388)
120 COG5185 HEC1 Protein involved 94.4 16 0.00034 44.1 27.4 41 741-781 346-386 (622)
121 KOG0971 Microtubule-associated 94.3 22 0.00047 45.7 36.9 255 661-935 225-544 (1243)
122 PF10146 zf-C4H2: Zinc finger- 94.2 1.2 2.7E-05 48.4 14.8 71 789-866 17-87 (230)
123 smart00787 Spc7 Spc7 kinetocho 94.2 1.2 2.6E-05 50.3 15.2 43 565-614 48-90 (312)
124 TIGR01000 bacteriocin_acc bact 94.1 12 0.00026 43.7 23.2 25 662-686 99-123 (457)
125 KOG0994 Extracellular matrix g 94.1 28 0.00061 45.8 32.1 22 662-683 1421-1442(1758)
126 PF13166 AAA_13: AAA domain 94.0 17 0.00037 44.0 25.2 27 664-690 281-307 (712)
127 KOG0995 Centromere-associated 94.0 20 0.00043 43.9 31.3 26 711-736 296-321 (581)
128 TIGR01843 type_I_hlyD type I s 94.0 13 0.00027 41.5 23.9 21 661-681 82-102 (423)
129 KOG0999 Microtubule-associated 94.0 20 0.00044 43.9 25.8 145 695-876 100-252 (772)
130 PF09726 Macoilin: Transmembra 93.8 8.3 0.00018 48.0 22.2 204 662-876 420-638 (697)
131 KOG2072 Translation initiation 93.7 27 0.00058 44.6 36.8 87 829-929 674-761 (988)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.6 6.5 0.00014 39.0 17.3 13 839-851 112-124 (132)
133 PF05622 HOOK: HOOK protein; 93.6 0.02 4.4E-07 69.4 0.0 63 808-870 360-422 (713)
134 PLN03229 acetyl-coenzyme A car 93.6 13 0.00028 46.8 23.1 19 659-677 454-472 (762)
135 TIGR01005 eps_transp_fam exopo 93.5 14 0.0003 45.5 23.6 33 702-734 237-269 (754)
136 KOG0963 Transcription factor/C 93.5 10 0.00023 46.6 21.7 40 804-844 317-356 (629)
137 cd08915 V_Alix_like Protein-in 93.4 16 0.00035 41.0 26.8 34 844-878 289-322 (342)
138 PF06008 Laminin_I: Laminin Do 93.4 14 0.0003 40.2 28.2 23 867-889 234-256 (264)
139 KOG0962 DNA repair protein RAD 93.4 38 0.00082 45.1 30.6 68 801-870 1012-1079(1294)
140 KOG0946 ER-Golgi vesicle-tethe 93.4 19 0.0004 45.8 23.9 25 482-506 455-479 (970)
141 PRK10869 recombination and rep 93.3 15 0.00032 44.4 22.9 74 862-935 308-383 (553)
142 PF06008 Laminin_I: Laminin Do 93.2 15 0.00032 40.0 26.5 22 868-889 228-249 (264)
143 KOG0239 Kinesin (KAR3 subfamil 92.9 2.7 5.8E-05 51.9 16.2 89 799-888 236-324 (670)
144 KOG2751 Beclin-like protein [S 92.7 18 0.0004 43.0 21.6 93 739-868 176-268 (447)
145 PRK10929 putative mechanosensi 92.6 14 0.00031 48.3 22.4 95 659-756 22-119 (1109)
146 PF04111 APG6: Autophagy prote 92.6 2.3 4.9E-05 47.9 14.0 39 829-867 96-134 (314)
147 PF15450 DUF4631: Domain of un 92.5 32 0.00068 42.0 26.2 121 739-883 358-478 (531)
148 PLN03229 acetyl-coenzyme A car 92.4 14 0.0003 46.6 21.1 14 665-678 484-497 (762)
149 KOG4643 Uncharacterized coiled 92.3 46 0.00099 43.4 31.7 23 764-786 437-459 (1195)
150 PRK11281 hypothetical protein; 92.3 14 0.0003 48.4 22.0 99 659-765 35-147 (1113)
151 PF05483 SCP-1: Synaptonemal c 92.2 40 0.00086 42.4 32.6 109 806-914 589-710 (786)
152 PF09730 BicD: Microtubule-ass 91.9 22 0.00049 44.6 22.2 41 837-877 417-457 (717)
153 PF09755 DUF2046: Uncharacteri 91.8 29 0.00063 39.9 24.7 42 663-711 23-64 (310)
154 PF06705 SF-assemblin: SF-asse 91.8 22 0.00048 38.5 25.2 17 740-756 93-109 (247)
155 KOG1003 Actin filament-coating 91.7 23 0.0005 38.6 21.5 64 800-863 140-203 (205)
156 KOG1937 Uncharacterized conser 91.6 38 0.00082 40.8 30.2 101 799-899 384-491 (521)
157 PF10168 Nup88: Nuclear pore c 91.5 18 0.00038 45.4 21.0 85 671-756 562-649 (717)
158 PF09787 Golgin_A5: Golgin sub 91.5 38 0.00082 40.6 24.7 30 665-694 107-136 (511)
159 PF12325 TMF_TATA_bd: TATA ele 91.4 7.1 0.00015 39.0 14.4 24 885-910 97-120 (120)
160 PF06818 Fez1: Fez1; InterPro 91.2 13 0.00028 40.4 17.0 42 848-889 133-174 (202)
161 TIGR03017 EpsF chain length de 91.2 33 0.00071 39.4 23.7 12 741-752 256-267 (444)
162 PF04111 APG6: Autophagy prote 91.1 4.6 9.9E-05 45.6 14.4 66 806-871 45-110 (314)
163 KOG1937 Uncharacterized conser 91.1 42 0.00091 40.5 23.3 108 663-780 296-420 (521)
164 KOG0163 Myosin class VI heavy 91.0 54 0.0012 41.8 23.6 96 684-781 836-932 (1259)
165 COG4372 Uncharacterized protei 90.7 43 0.00093 39.8 31.5 39 689-727 96-134 (499)
166 PF15290 Syntaphilin: Golgi-lo 90.6 3.9 8.5E-05 46.2 13.0 71 708-790 74-144 (305)
167 PF14662 CCDC155: Coiled-coil 90.6 28 0.00062 37.7 25.1 60 823-882 86-145 (193)
168 PRK10884 SH3 domain-containing 90.5 4.7 0.0001 43.3 13.1 68 801-871 97-164 (206)
169 PF10234 Cluap1: Clusterin-ass 90.4 14 0.00031 41.4 17.0 84 801-884 166-249 (267)
170 PF02403 Seryl_tRNA_N: Seryl-t 90.3 2.7 5.8E-05 39.7 10.0 26 801-826 33-58 (108)
171 PF03999 MAP65_ASE1: Microtubu 90.1 0.14 3.1E-06 61.5 1.8 74 801-874 225-300 (619)
172 PRK10929 putative mechanosensi 90.0 80 0.0017 41.8 32.9 18 740-757 145-162 (1109)
173 KOG1144 Translation initiation 89.7 0.77 1.7E-05 57.0 7.2 44 1067-1110 235-278 (1064)
174 PF07106 TBPIP: Tat binding pr 89.6 5.5 0.00012 40.6 12.2 29 801-829 76-104 (169)
175 PF04782 DUF632: Protein of un 89.5 29 0.00063 39.7 18.9 155 763-938 92-257 (312)
176 PF12325 TMF_TATA_bd: TATA ele 89.3 6.1 0.00013 39.5 11.9 72 665-736 28-109 (120)
177 KOG0804 Cytoplasmic Zn-finger 89.0 8.2 0.00018 46.0 14.4 108 801-920 351-458 (493)
178 PF12252 SidE: Dot/Icm substra 89.0 33 0.00071 44.9 20.2 87 832-939 1197-1295(1439)
179 PF13514 AAA_27: AAA domain 88.7 90 0.0019 40.8 34.5 10 942-951 1001-1010(1111)
180 PF11932 DUF3450: Protein of u 88.4 26 0.00056 38.0 16.9 103 796-913 48-155 (251)
181 PF11600 CAF-1_p150: Chromatin 88.3 2.7 5.9E-05 44.7 9.4 19 1090-1108 154-172 (216)
182 PF07106 TBPIP: Tat binding pr 87.9 7.4 0.00016 39.7 11.8 20 759-778 68-87 (169)
183 PF05384 DegS: Sensor protein 87.8 39 0.00084 35.5 17.3 101 803-916 26-141 (159)
184 PF04156 IncA: IncA protein; 87.8 32 0.00069 35.3 16.4 63 804-866 88-150 (191)
185 PF06818 Fez1: Fez1; InterPro 87.4 48 0.001 36.2 20.1 68 668-735 11-78 (202)
186 PF08614 ATG16: Autophagy prot 87.4 9.8 0.00021 39.8 12.6 29 688-716 81-109 (194)
187 PF04156 IncA: IncA protein; 87.4 22 0.00049 36.4 15.0 54 672-725 79-132 (191)
188 TIGR02894 DNA_bind_RsfA transc 87.4 11 0.00023 39.8 12.7 52 808-859 101-152 (161)
189 PRK10246 exonuclease subunit S 87.4 1.1E+02 0.0023 40.1 32.9 7 914-920 889-895 (1047)
190 PRK15422 septal ring assembly 87.2 3.3 7.1E-05 39.1 8.0 63 663-725 7-76 (79)
191 PF10498 IFT57: Intra-flagella 87.2 39 0.00085 39.3 18.2 57 802-858 264-320 (359)
192 PLN03188 kinesin-12 family pro 87.1 1.3E+02 0.0027 40.6 24.8 33 839-871 1211-1243(1320)
193 PF09730 BicD: Microtubule-ass 87.0 99 0.0021 39.3 23.4 43 694-736 26-68 (717)
194 KOG0999 Microtubule-associated 86.9 90 0.002 38.7 28.7 181 666-856 7-194 (772)
195 PF08614 ATG16: Autophagy prot 86.7 9.8 0.00021 39.8 12.2 67 804-877 116-182 (194)
196 KOG0980 Actin-binding protein 86.7 1.1E+02 0.0024 39.6 29.6 47 686-732 349-395 (980)
197 KOG0804 Cytoplasmic Zn-finger 86.7 36 0.00078 40.9 17.7 22 710-731 348-369 (493)
198 KOG4643 Uncharacterized coiled 86.6 1.2E+02 0.0026 39.9 28.1 35 662-696 259-293 (1195)
199 PF05622 HOOK: HOOK protein; 86.4 0.22 4.7E-06 60.8 0.0 45 664-708 243-287 (713)
200 cd09234 V_HD-PTP_like Protein- 85.8 70 0.0015 36.4 28.9 19 766-784 194-212 (337)
201 PF06005 DUF904: Protein of un 85.6 13 0.00029 34.3 11.0 63 663-725 7-69 (72)
202 cd09235 V_Alix Middle V-domain 85.6 72 0.0016 36.3 27.2 19 766-784 194-212 (339)
203 cd07651 F-BAR_PombeCdc15_like 85.5 56 0.0012 35.0 19.7 108 813-932 109-217 (236)
204 PF02403 Seryl_tRNA_N: Seryl-t 85.4 3.9 8.5E-05 38.6 7.8 61 665-725 34-97 (108)
205 KOG4302 Microtubule-associated 85.0 1.2E+02 0.0026 38.3 23.5 33 842-874 229-261 (660)
206 cd07623 BAR_SNX1_2 The Bin/Amp 85.0 60 0.0013 34.9 20.4 153 766-921 29-196 (224)
207 cd09238 V_Alix_like_1 Protein- 85.0 77 0.0017 36.2 26.8 18 766-783 198-215 (339)
208 KOG0239 Kinesin (KAR3 subfamil 84.8 35 0.00077 42.6 17.4 40 808-847 231-270 (670)
209 KOG1962 B-cell receptor-associ 84.8 12 0.00026 41.0 11.9 81 766-870 130-210 (216)
210 PRK10361 DNA recombination pro 84.8 1E+02 0.0022 37.5 21.9 8 892-899 202-209 (475)
211 PF14915 CCDC144C: CCDC144C pr 84.5 85 0.0018 36.2 27.0 196 661-857 32-274 (305)
212 PF07946 DUF1682: Protein of u 84.5 3.5 7.5E-05 46.3 8.2 30 1048-1077 258-289 (321)
213 PF01576 Myosin_tail_1: Myosin 84.3 0.31 6.7E-06 61.0 0.0 37 745-781 298-339 (859)
214 PF15619 Lebercilin: Ciliary p 84.2 64 0.0014 34.6 21.3 18 664-681 16-33 (194)
215 PF03962 Mnd1: Mnd1 family; I 84.0 18 0.00039 38.3 12.7 65 815-880 66-130 (188)
216 PF11932 DUF3450: Protein of u 83.9 52 0.0011 35.7 16.4 10 810-819 48-57 (251)
217 PF03904 DUF334: Domain of unk 83.8 24 0.00053 39.0 13.8 18 771-788 44-61 (230)
218 PF15397 DUF4618: Domain of un 83.6 81 0.0018 35.6 17.9 128 766-913 23-158 (258)
219 PRK10698 phage shock protein P 83.5 72 0.0016 34.7 19.3 59 794-852 89-147 (222)
220 PF13851 GAS: Growth-arrest sp 83.5 68 0.0015 34.4 21.0 13 767-779 66-78 (201)
221 PF11600 CAF-1_p150: Chromatin 83.5 7.7 0.00017 41.4 9.9 9 1099-1107 156-164 (216)
222 PF05911 DUF869: Plant protein 83.1 1.5E+02 0.0033 38.0 26.4 70 807-876 123-192 (769)
223 KOG4302 Microtubule-associated 83.0 1.4E+02 0.0031 37.7 28.4 76 700-778 101-196 (660)
224 PF10146 zf-C4H2: Zinc finger- 82.8 52 0.0011 36.3 15.9 25 839-863 53-77 (230)
225 PF01576 Myosin_tail_1: Myosin 82.3 0.42 9E-06 59.9 0.0 32 92-123 61-92 (859)
226 PF06705 SF-assemblin: SF-asse 82.1 81 0.0018 34.3 25.5 47 874-921 175-221 (247)
227 KOG0810 SNARE protein Syntaxin 82.0 1E+02 0.0022 35.3 22.4 103 664-782 44-146 (297)
228 COG1842 PspA Phage shock prote 81.9 87 0.0019 34.5 19.6 16 766-781 88-103 (225)
229 PRK10698 phage shock protein P 81.9 19 0.0004 39.0 12.1 19 740-758 167-185 (222)
230 PF09787 Golgin_A5: Golgin sub 81.9 1E+02 0.0023 37.0 19.3 9 747-755 289-297 (511)
231 cd07653 F-BAR_CIP4-like The F- 81.8 78 0.0017 33.9 21.1 191 743-940 2-215 (251)
232 PF15233 SYCE1: Synaptonemal c 81.8 63 0.0014 33.5 14.8 48 767-827 10-57 (134)
233 cd07657 F-BAR_Fes_Fer The F-BA 81.6 88 0.0019 34.3 17.7 19 766-784 68-86 (237)
234 KOG2129 Uncharacterized conser 81.4 1.3E+02 0.0029 36.3 24.1 41 662-709 45-85 (552)
235 PF04849 HAP1_N: HAP1 N-termin 81.3 1.1E+02 0.0024 35.3 20.0 34 660-693 160-193 (306)
236 PF15066 CAGE1: Cancer-associa 80.5 1.5E+02 0.0032 36.2 24.4 89 767-871 433-521 (527)
237 TIGR03545 conserved hypothetic 80.4 43 0.00092 41.0 15.6 54 808-864 216-269 (555)
238 KOG0288 WD40 repeat protein Ti 80.2 53 0.0011 39.3 15.5 51 685-735 17-67 (459)
239 KOG0163 Myosin class VI heavy 80.1 7.9 0.00017 48.6 9.4 39 1042-1080 941-979 (1259)
240 PF06785 UPF0242: Uncharacteri 79.9 99 0.0021 36.4 17.2 25 712-736 88-112 (401)
241 KOG0288 WD40 repeat protein Ti 79.7 45 0.00099 39.8 14.8 128 802-934 32-169 (459)
242 KOG4438 Centromere-associated 79.7 1.5E+02 0.0033 35.8 28.7 41 740-780 280-323 (446)
243 PF06005 DUF904: Protein of un 79.7 37 0.00081 31.5 11.5 30 839-868 39-68 (72)
244 COG2433 Uncharacterized conser 79.6 23 0.00049 43.8 12.9 95 662-758 417-516 (652)
245 COG4026 Uncharacterized protei 79.6 16 0.00034 40.6 10.5 76 678-755 132-207 (290)
246 PF09766 FimP: Fms-interacting 79.5 31 0.00068 39.7 13.5 18 889-906 193-210 (355)
247 PF14197 Cep57_CLD_2: Centroso 79.3 28 0.0006 32.0 10.4 66 664-729 2-67 (69)
248 PF03962 Mnd1: Mnd1 family; I 79.3 19 0.00042 38.1 10.9 66 654-719 56-127 (188)
249 PF09738 DUF2051: Double stran 79.1 23 0.00049 40.4 12.0 99 664-764 81-179 (302)
250 KOG3647 Predicted coiled-coil 78.9 1E+02 0.0022 35.4 16.6 14 768-781 55-68 (338)
251 PF12795 MscS_porin: Mechanose 78.9 1E+02 0.0022 33.3 22.2 31 739-769 78-108 (240)
252 TIGR03017 EpsF chain length de 78.7 1.3E+02 0.0029 34.6 23.1 27 690-716 173-199 (444)
253 PRK11281 hypothetical protein; 78.7 2.4E+02 0.0053 37.6 30.4 20 740-759 164-183 (1113)
254 PF05010 TACC: Transforming ac 78.7 1.1E+02 0.0023 33.5 25.1 31 808-838 108-138 (207)
255 PF15254 CCDC14: Coiled-coil d 78.6 1.8E+02 0.0038 37.6 19.9 58 655-712 336-411 (861)
256 PF07200 Mod_r: Modifier of ru 78.5 76 0.0016 31.7 17.4 20 905-927 125-144 (150)
257 PF15290 Syntaphilin: Golgi-lo 78.4 20 0.00043 40.8 11.1 92 655-750 51-149 (305)
258 KOG1962 B-cell receptor-associ 78.3 32 0.00069 37.9 12.3 61 830-890 149-209 (216)
259 PRK09510 tolA cell envelope in 78.2 11 0.00023 44.4 9.4 12 923-934 11-22 (387)
260 PF10234 Cluap1: Clusterin-ass 78.1 42 0.00092 37.9 13.6 67 801-874 194-260 (267)
261 KOG1003 Actin filament-coating 78.1 1.1E+02 0.0025 33.6 22.9 75 803-877 108-182 (205)
262 PF10481 CENP-F_N: Cenp-F N-te 77.8 90 0.002 35.8 15.8 66 805-870 61-126 (307)
263 PRK05431 seryl-tRNA synthetase 77.1 17 0.00037 42.6 10.7 12 769-780 27-38 (425)
264 COG4026 Uncharacterized protei 77.1 27 0.00058 38.9 11.4 11 904-914 210-220 (290)
265 KOG4364 Chromatin assembly fac 77.0 10 0.00023 46.9 9.1 15 936-950 134-148 (811)
266 PF12777 MT: Microtubule-bindi 76.9 1.4E+02 0.0031 34.1 19.1 41 807-847 217-257 (344)
267 PRK10884 SH3 domain-containing 76.9 25 0.00053 38.1 11.0 68 665-732 91-162 (206)
268 KOG4360 Uncharacterized coiled 76.8 96 0.0021 38.1 16.6 146 693-866 157-302 (596)
269 cd07599 BAR_Rvs167p The Bin/Am 76.2 1.1E+02 0.0024 32.4 21.7 42 819-863 150-191 (216)
270 KOG0978 E3 ubiquitin ligase in 75.6 2.4E+02 0.0052 36.0 31.9 21 919-939 604-624 (698)
271 PF09755 DUF2046: Uncharacteri 75.4 1.7E+02 0.0036 34.1 24.9 68 801-871 226-293 (310)
272 PTZ00266 NIMA-related protein 75.4 15 0.00032 47.8 10.3 9 636-644 223-231 (1021)
273 COG3074 Uncharacterized protei 75.3 16 0.00034 34.4 7.7 58 663-720 7-71 (79)
274 TIGR02449 conserved hypothetic 75.3 30 0.00065 31.8 9.5 50 662-711 2-51 (65)
275 PTZ00266 NIMA-related protein 75.0 13 0.00029 48.1 9.8 7 507-513 123-129 (1021)
276 TIGR00414 serS seryl-tRNA synt 74.7 23 0.0005 41.5 10.9 13 769-781 29-41 (418)
277 cd07664 BAR_SNX2 The Bin/Amphi 74.6 1.4E+02 0.0031 32.9 19.9 157 742-909 25-196 (234)
278 COG4477 EzrA Negative regulato 74.6 2.3E+02 0.005 35.3 28.7 73 683-755 106-180 (570)
279 COG4717 Uncharacterized conser 74.6 2.8E+02 0.0061 36.3 24.1 71 649-724 171-241 (984)
280 smart00502 BBC B-Box C-termina 74.5 73 0.0016 29.5 17.5 63 802-864 5-68 (127)
281 PLN02678 seryl-tRNA synthetase 74.4 17 0.00036 43.4 9.8 69 664-732 37-108 (448)
282 PF05557 MAD: Mitotic checkpoi 74.2 1 2.2E-05 55.2 0.0 13 742-754 226-238 (722)
283 PF13870 DUF4201: Domain of un 74.1 1.1E+02 0.0024 31.5 19.1 43 826-868 92-134 (177)
284 PF09304 Cortex-I_coil: Cortex 74.0 97 0.0021 31.2 13.2 19 801-819 13-31 (107)
285 TIGR00414 serS seryl-tRNA synt 74.0 19 0.0004 42.2 10.0 67 664-730 34-104 (418)
286 TIGR02338 gimC_beta prefoldin, 73.8 50 0.0011 31.9 11.2 34 744-777 15-48 (110)
287 KOG4809 Rab6 GTPase-interactin 73.1 2.5E+02 0.0055 35.1 25.7 118 661-778 325-460 (654)
288 PF09304 Cortex-I_coil: Cortex 72.6 61 0.0013 32.5 11.5 31 664-694 13-43 (107)
289 KOG3054 Uncharacterized conser 72.6 11 0.00023 42.3 7.1 9 1094-1102 167-175 (299)
290 KOG4460 Nuclear pore complex, 72.4 1.3E+02 0.0029 37.4 16.3 41 769-809 601-642 (741)
291 cd09236 V_AnPalA_UmRIM20_like 72.2 1.9E+02 0.0041 33.3 27.0 34 844-878 300-333 (353)
292 TIGR01010 BexC_CtrB_KpsE polys 72.2 1.8E+02 0.0039 33.0 17.5 35 635-670 113-149 (362)
293 PLN02320 seryl-tRNA synthetase 72.0 14 0.0003 44.7 8.5 23 682-704 101-123 (502)
294 PF06810 Phage_GP20: Phage min 71.8 74 0.0016 33.0 12.6 82 665-747 18-105 (155)
295 PF15294 Leu_zip: Leucine zipp 71.7 1.9E+02 0.0041 33.1 16.6 47 663-709 128-174 (278)
296 PF04949 Transcrip_act: Transc 71.5 78 0.0017 33.5 12.5 59 808-866 81-139 (159)
297 cd09237 V_ScBro1_like Protein- 71.3 2E+02 0.0042 33.1 25.9 19 766-784 204-222 (356)
298 PF14662 CCDC155: Coiled-coil 71.0 1.7E+02 0.0036 32.1 26.5 14 766-779 84-97 (193)
299 TIGR01069 mutS2 MutS2 family p 71.0 90 0.002 39.6 15.4 42 666-707 514-555 (771)
300 PF15035 Rootletin: Ciliary ro 71.0 1.5E+02 0.0033 31.7 17.1 82 837-935 86-167 (182)
301 PRK10246 exonuclease subunit S 71.0 3.4E+02 0.0074 35.7 29.6 10 943-952 500-509 (1047)
302 cd00176 SPEC Spectrin repeats, 70.8 1.1E+02 0.0024 30.0 17.7 92 665-759 38-133 (213)
303 PLN02939 transferase, transfer 70.4 3.6E+02 0.0078 35.8 30.9 117 592-713 59-181 (977)
304 PRK05431 seryl-tRNA synthetase 70.4 20 0.00044 42.0 9.2 68 664-731 32-102 (425)
305 PRK09841 cryptic autophosphory 70.4 2.2E+02 0.0047 35.8 18.3 22 648-670 225-246 (726)
306 PF10481 CENP-F_N: Cenp-F N-te 70.3 2.1E+02 0.0046 33.0 16.6 16 769-784 73-88 (307)
307 TIGR02977 phageshock_pspA phag 69.8 1.6E+02 0.0036 31.6 19.0 48 798-845 93-140 (219)
308 KOG1144 Translation initiation 69.7 9.9 0.00022 47.9 6.7 21 1080-1100 270-290 (1064)
309 PF08826 DMPK_coil: DMPK coile 69.5 66 0.0014 29.3 10.1 50 681-730 11-60 (61)
310 COG2433 Uncharacterized conser 69.2 97 0.0021 38.8 14.5 17 682-698 343-359 (652)
311 COG3096 MukB Uncharacterized p 69.1 3.5E+02 0.0077 35.1 33.1 118 642-759 758-917 (1480)
312 PF15450 DUF4631: Domain of un 69.0 2.9E+02 0.0064 34.2 24.5 7 740-746 309-315 (531)
313 PRK03947 prefoldin subunit alp 68.9 1.3E+02 0.0028 30.0 13.8 36 830-865 99-134 (140)
314 KOG4593 Mitotic checkpoint pro 68.8 3.4E+02 0.0073 34.8 30.6 85 693-782 117-209 (716)
315 PF05557 MAD: Mitotic checkpoi 68.7 67 0.0015 40.0 13.5 39 902-943 618-657 (722)
316 KOG4438 Centromere-associated 68.5 2.8E+02 0.006 33.7 28.0 67 836-908 363-429 (446)
317 PLN02320 seryl-tRNA synthetase 68.2 29 0.00062 42.1 10.0 12 769-780 92-103 (502)
318 PF10498 IFT57: Intra-flagella 68.1 95 0.0021 36.3 13.7 130 637-771 193-339 (359)
319 cd07588 BAR_Amphiphysin The Bi 68.0 1.9E+02 0.0041 31.6 22.2 42 818-862 139-180 (211)
320 PF12795 MscS_porin: Mechanose 67.8 1.8E+02 0.004 31.4 22.2 22 827-848 187-208 (240)
321 cd00632 Prefoldin_beta Prefold 67.6 74 0.0016 30.4 10.8 29 747-775 14-42 (105)
322 cd07665 BAR_SNX1 The Bin/Amphi 67.5 2.1E+02 0.0045 31.8 20.5 164 745-921 28-206 (234)
323 KOG0963 Transcription factor/C 67.5 3.4E+02 0.0073 34.3 31.1 74 801-874 193-270 (629)
324 PF12329 TMF_DNA_bd: TATA elem 67.4 88 0.0019 29.0 10.8 58 804-868 12-69 (74)
325 PF10211 Ax_dynein_light: Axon 67.3 1.3E+02 0.0027 32.2 13.4 37 800-836 123-159 (189)
326 KOG0978 E3 ubiquitin ligase in 67.2 3.6E+02 0.0078 34.5 31.0 14 925-938 668-681 (698)
327 KOG0980 Actin-binding protein 67.1 4E+02 0.0087 35.0 28.0 11 432-442 163-173 (980)
328 PRK03947 prefoldin subunit alp 67.0 1.4E+02 0.003 29.7 12.9 30 842-871 97-126 (140)
329 PF04012 PspA_IM30: PspA/IM30 66.7 1.8E+02 0.0039 30.8 20.3 11 768-778 89-99 (221)
330 PF05262 Borrelia_P83: Borreli 66.2 19 0.00042 43.4 8.1 74 858-955 77-161 (489)
331 KOG3647 Predicted coiled-coil 66.1 2.6E+02 0.0055 32.4 20.9 63 803-872 139-201 (338)
332 PF06103 DUF948: Bacterial pro 65.8 82 0.0018 29.1 10.4 58 810-867 25-82 (90)
333 KOG4451 Uncharacterized conser 65.5 1.8E+02 0.004 32.8 14.4 29 755-783 1-29 (286)
334 PRK11519 tyrosine kinase; Prov 65.5 3E+02 0.0066 34.5 18.2 16 654-670 231-246 (719)
335 TIGR03794 NHPM_micro_HlyD NHPM 65.3 2.7E+02 0.0058 32.3 18.2 28 661-688 90-117 (421)
336 PF08647 BRE1: BRE1 E3 ubiquit 65.3 1.2E+02 0.0026 29.0 11.7 95 672-778 1-95 (96)
337 PF03993 DUF349: Domain of Unk 65.2 57 0.0012 28.8 8.9 56 856-915 12-68 (77)
338 PRK09343 prefoldin subunit bet 65.2 1E+02 0.0022 30.6 11.6 7 768-774 43-49 (121)
339 PF05010 TACC: Transforming ac 65.0 2.2E+02 0.0048 31.3 26.5 32 715-748 68-99 (207)
340 KOG3091 Nuclear pore complex, 64.6 3.5E+02 0.0075 33.4 18.3 30 343-372 64-93 (508)
341 PF09789 DUF2353: Uncharacteri 64.4 2.8E+02 0.0061 32.3 23.8 51 827-877 128-178 (319)
342 PF04912 Dynamitin: Dynamitin 64.4 2.4E+02 0.0052 32.8 16.0 17 664-680 206-222 (388)
343 COG4487 Uncharacterized protei 64.3 3.3E+02 0.0072 33.1 26.4 37 875-913 185-221 (438)
344 PRK15422 septal ring assembly 64.2 72 0.0016 30.6 9.6 14 806-819 20-33 (79)
345 PF11180 DUF2968: Protein of u 64.2 1.3E+02 0.0029 32.8 12.9 65 665-729 110-174 (192)
346 PF05529 Bap31: B-cell recepto 64.0 68 0.0015 33.4 10.6 38 839-876 154-191 (192)
347 KOG4403 Cell surface glycoprot 63.9 1.7E+02 0.0037 35.5 14.7 22 459-480 21-42 (575)
348 PF06009 Laminin_II: Laminin D 63.7 2.3 5E-05 42.4 0.0 88 805-892 18-108 (138)
349 PF03961 DUF342: Protein of un 63.0 57 0.0012 38.3 11.0 75 661-735 328-408 (451)
350 cd07627 BAR_Vps5p The Bin/Amph 63.0 2.2E+02 0.0047 30.5 23.5 111 786-913 97-210 (216)
351 KOG4603 TBP-1 interacting prot 63.0 1.6E+02 0.0034 32.1 12.9 55 800-867 119-173 (201)
352 KOG4572 Predicted DNA-binding 62.9 4.7E+02 0.01 34.4 29.4 86 843-936 1136-1227(1424)
353 PF04108 APG17: Autophagy prot 62.8 3.2E+02 0.0069 32.3 33.7 68 854-923 326-394 (412)
354 KOG1850 Myosin-like coiled-coi 62.8 3.2E+02 0.0069 32.3 29.1 48 823-870 220-267 (391)
355 KOG2991 Splicing regulator [RN 62.7 76 0.0017 36.2 11.1 114 662-783 172-305 (330)
356 cd00179 SynN Syntaxin N-termin 62.6 1.6E+02 0.0035 28.9 13.4 24 860-883 88-111 (151)
357 KOG2891 Surface glycoprotein [ 62.5 38 0.00082 38.8 8.9 15 1085-1099 384-398 (445)
358 KOG1853 LIS1-interacting prote 62.2 2.9E+02 0.0063 31.7 21.4 40 850-889 137-176 (333)
359 PLN02678 seryl-tRNA synthetase 62.0 52 0.0011 39.4 10.4 14 768-781 31-44 (448)
360 PF08581 Tup_N: Tup N-terminal 61.7 53 0.0011 31.1 8.4 45 688-732 4-48 (79)
361 KOG2412 Nuclear-export-signal 61.4 22 0.00047 43.5 7.3 12 663-674 27-38 (591)
362 PF05278 PEARLI-4: Arabidopsis 61.2 3E+02 0.0065 31.5 20.3 62 798-866 194-255 (269)
363 cd07654 F-BAR_FCHSD The F-BAR 60.9 2.8E+02 0.0062 31.2 17.6 157 766-941 73-229 (264)
364 cd07590 BAR_Bin3 The Bin/Amphi 60.8 2.7E+02 0.0058 30.8 19.1 42 818-862 145-186 (225)
365 TIGR02977 phageshock_pspA phag 60.4 83 0.0018 33.8 10.7 19 740-758 167-185 (219)
366 KOG1655 Protein involved in va 59.3 2.9E+02 0.0062 30.7 15.4 154 672-854 17-173 (218)
367 PF10473 CENP-F_leu_zip: Leuci 59.2 2.3E+02 0.005 29.5 20.4 17 765-781 2-18 (140)
368 cd07655 F-BAR_PACSIN The F-BAR 58.9 2.8E+02 0.0062 30.5 19.3 37 898-934 201-237 (258)
369 PF05531 NPV_P10: Nucleopolyhe 58.9 40 0.00086 31.9 7.0 50 804-853 11-63 (75)
370 KOG2891 Surface glycoprotein [ 58.8 40 0.00087 38.6 8.3 70 1037-1109 344-421 (445)
371 TIGR02231 conserved hypothetic 58.8 1.3E+02 0.0029 35.9 13.1 32 839-870 138-169 (525)
372 cd07686 F-BAR_Fer The F-BAR (F 58.7 3E+02 0.0065 30.7 18.6 18 896-913 205-222 (234)
373 PF13863 DUF4200: Domain of un 58.5 1.8E+02 0.0039 28.1 13.1 6 747-752 96-101 (126)
374 PF05529 Bap31: B-cell recepto 58.1 43 0.00093 34.9 8.0 30 808-837 158-187 (192)
375 TIGR00020 prfB peptide chain r 58.1 1.2E+02 0.0027 35.6 12.3 58 724-781 8-67 (364)
376 PF00901 Orbi_VP5: Orbivirus o 58.0 3.8E+02 0.0081 33.2 16.3 30 745-774 160-190 (508)
377 PRK11546 zraP zinc resistance 57.9 84 0.0018 32.8 9.8 8 860-867 96-103 (143)
378 TIGR03545 conserved hypothetic 57.6 1.4E+02 0.0031 36.8 13.3 37 827-863 221-257 (555)
379 cd07656 F-BAR_srGAP The F-BAR 57.6 3E+02 0.0066 30.4 19.5 66 824-889 130-206 (241)
380 PF11559 ADIP: Afadin- and alp 57.1 2.2E+02 0.0047 28.7 16.5 88 764-871 32-119 (151)
381 COG1842 PspA Phage shock prote 57.1 3.1E+02 0.0067 30.4 21.1 54 796-849 91-144 (225)
382 PF04728 LPP: Lipoprotein leuc 57.0 87 0.0019 28.3 8.4 42 822-863 7-48 (56)
383 PRK00578 prfB peptide chain re 56.7 1.4E+02 0.003 35.2 12.5 58 724-781 8-67 (367)
384 PF14362 DUF4407: Domain of un 56.7 3.2E+02 0.0069 30.4 17.6 30 834-863 184-213 (301)
385 PF05911 DUF869: Plant protein 56.3 5.7E+02 0.012 33.2 27.3 29 697-725 47-75 (769)
386 PRK10636 putative ABC transpor 56.3 69 0.0015 39.3 10.5 66 807-872 559-631 (638)
387 cd07651 F-BAR_PombeCdc15_like 56.3 2.9E+02 0.0062 29.8 20.1 27 911-938 175-201 (236)
388 PF06156 DUF972: Protein of un 56.1 48 0.001 32.8 7.4 34 798-831 9-42 (107)
389 PF15254 CCDC14: Coiled-coil d 56.1 5.8E+02 0.013 33.3 18.7 23 853-875 532-554 (861)
390 PRK09841 cryptic autophosphory 55.9 5.2E+02 0.011 32.6 18.0 17 933-949 400-416 (726)
391 PF07889 DUF1664: Protein of u 55.9 1.1E+02 0.0024 31.2 10.2 14 740-753 111-124 (126)
392 PF14197 Cep57_CLD_2: Centroso 55.8 1.5E+02 0.0032 27.4 10.0 37 839-875 26-62 (69)
393 TIGR03752 conj_TIGR03752 integ 55.7 1.3E+02 0.0028 36.6 12.2 17 843-859 91-107 (472)
394 TIGR02231 conserved hypothetic 55.3 1.5E+02 0.0033 35.4 12.8 18 853-870 138-155 (525)
395 COG0172 SerS Seryl-tRNA synthe 55.2 44 0.00095 40.0 8.3 68 665-732 34-105 (429)
396 PF12958 DUF3847: Protein of u 54.9 1.7E+02 0.0036 28.4 10.6 26 898-923 60-85 (86)
397 PRK00409 recombination and DNA 54.9 2.6E+02 0.0055 35.8 15.2 9 767-775 588-596 (782)
398 COG0497 RecN ATPase involved i 54.9 5.2E+02 0.011 32.4 25.6 28 860-887 342-369 (557)
399 KOG4677 Golgi integral membran 54.5 5E+02 0.011 32.0 22.6 179 739-925 337-536 (554)
400 cd07648 F-BAR_FCHO The F-BAR ( 54.2 3.2E+02 0.007 29.8 20.1 32 902-933 180-211 (261)
401 smart00503 SynN Syntaxin N-ter 53.9 1.9E+02 0.0042 27.0 13.9 19 863-881 92-110 (117)
402 cd07591 BAR_Rvs161p The Bin/Am 53.5 3.3E+02 0.0073 29.7 20.5 43 818-863 144-186 (224)
403 PRK00247 putative inner membra 53.3 50 0.0011 39.5 8.4 7 904-910 147-153 (429)
404 KOG1853 LIS1-interacting prote 52.5 4.2E+02 0.0091 30.6 17.3 52 665-716 25-80 (333)
405 KOG2150 CCR4-NOT transcription 52.5 3E+02 0.0065 34.4 14.6 50 899-950 153-213 (575)
406 PF07889 DUF1664: Protein of u 52.3 2.1E+02 0.0045 29.4 11.3 26 827-852 84-109 (126)
407 PF13870 DUF4201: Domain of un 52.2 2.9E+02 0.0063 28.6 24.0 12 856-867 155-166 (177)
408 PF09731 Mitofilin: Mitochondr 52.2 5.1E+02 0.011 31.4 25.0 31 852-882 370-400 (582)
409 PF14735 HAUS4: HAUS augmin-li 52.2 3.8E+02 0.0083 30.0 19.6 35 740-781 148-182 (238)
410 cd00890 Prefoldin Prefoldin is 52.2 1.7E+02 0.0037 27.9 10.5 35 807-841 90-124 (129)
411 PF03670 UPF0184: Uncharacteri 52.0 72 0.0016 30.8 7.6 48 674-721 26-73 (83)
412 PF12711 Kinesin-relat_1: Kine 51.9 86 0.0019 30.3 8.2 36 745-780 2-41 (86)
413 PF08429 PLU-1: PLU-1-like pro 51.8 3.9E+02 0.0084 30.0 16.5 33 739-771 152-191 (335)
414 PF03148 Tektin: Tektin family 51.8 4.6E+02 0.0099 30.8 23.4 48 830-877 322-369 (384)
415 PHA01750 hypothetical protein 51.6 73 0.0016 29.9 7.3 10 810-819 41-50 (75)
416 PRK10361 DNA recombination pro 51.5 5.5E+02 0.012 31.6 24.0 21 892-912 196-216 (475)
417 COG3074 Uncharacterized protei 51.5 1.5E+02 0.0033 28.2 9.3 9 810-818 24-32 (79)
418 PF03114 BAR: BAR domain; Int 51.0 2.7E+02 0.0059 28.0 25.3 30 827-859 170-199 (229)
419 PF01920 Prefoldin_2: Prefoldi 50.9 2.1E+02 0.0045 26.5 12.8 13 768-780 3-15 (106)
420 KOG3433 Protein involved in me 50.8 2.5E+02 0.0055 30.9 12.2 50 824-873 115-164 (203)
421 PF06717 DUF1202: Protein of u 50.4 4.7E+02 0.01 30.5 16.8 47 661-707 132-178 (308)
422 PF13949 ALIX_LYPXL_bnd: ALIX 50.4 3.7E+02 0.008 29.3 28.0 19 766-784 147-165 (296)
423 PRK11546 zraP zinc resistance 50.1 1.4E+02 0.0031 31.2 10.0 58 668-725 48-112 (143)
424 TIGR02338 gimC_beta prefoldin, 49.8 2.5E+02 0.0055 27.2 13.4 11 768-778 8-18 (110)
425 PLN02939 transferase, transfer 49.7 7.9E+02 0.017 32.9 27.4 15 912-926 444-458 (977)
426 PF03999 MAP65_ASE1: Microtubu 49.5 5.5 0.00012 48.4 0.0 37 700-736 82-118 (619)
427 PF05672 MAP7: MAP7 (E-MAP-115 49.4 1.3E+02 0.0029 32.2 9.9 23 1088-1110 111-133 (171)
428 TIGR01069 mutS2 MutS2 family p 49.3 3.5E+02 0.0075 34.7 15.1 16 596-611 323-339 (771)
429 TIGR03319 YmdA_YtgF conserved 49.1 5.9E+02 0.013 31.3 22.2 12 925-936 185-196 (514)
430 PTZ00464 SNF-7-like protein; P 49.0 4E+02 0.0087 29.3 17.8 15 665-679 16-30 (211)
431 PLN02316 synthase/transferase 48.6 36 0.00078 44.5 6.8 27 1075-1102 270-296 (1036)
432 PF15294 Leu_zip: Leucine zipp 48.3 4.9E+02 0.011 30.1 26.3 148 743-893 90-265 (278)
433 PF03961 DUF342: Protein of un 48.2 94 0.002 36.6 9.6 14 766-779 330-343 (451)
434 PRK13729 conjugal transfer pil 47.9 63 0.0014 39.2 8.1 13 856-868 107-119 (475)
435 PF14257 DUF4349: Domain of un 47.7 20 0.00042 38.9 3.8 39 722-762 161-199 (262)
436 PF06120 Phage_HK97_TLTM: Tail 47.7 5.1E+02 0.011 30.1 16.6 169 773-953 41-224 (301)
437 PF05082 Rop-like: Rop-like; 47.6 73 0.0016 29.6 6.7 61 812-872 3-63 (66)
438 PRK00409 recombination and DNA 47.4 2.7E+02 0.0058 35.7 13.8 47 664-710 517-563 (782)
439 PF13747 DUF4164: Domain of un 47.3 2.7E+02 0.0058 26.8 10.8 62 664-725 12-76 (89)
440 PF05262 Borrelia_P83: Borreli 47.0 50 0.0011 40.1 7.2 22 890-911 116-137 (489)
441 PF14712 Snapin_Pallidin: Snap 46.8 2.4E+02 0.0052 26.1 10.2 69 789-858 20-90 (92)
442 PF07426 Dynactin_p22: Dynacti 46.8 3.9E+02 0.0084 28.5 16.7 16 740-755 6-21 (174)
443 PF06632 XRCC4: DNA double-str 46.8 1.8E+02 0.0038 34.1 11.2 70 665-734 128-205 (342)
444 KOG1103 Predicted coiled-coil 46.7 5.9E+02 0.013 30.6 17.8 222 681-919 29-256 (561)
445 PRK12714 flgK flagellar hook-a 46.5 6.7E+02 0.015 31.4 16.6 64 799-865 136-207 (624)
446 PF06657 Cep57_MT_bd: Centroso 46.5 1.4E+02 0.003 28.1 8.5 53 827-879 19-76 (79)
447 PF10368 YkyA: Putative cell-w 46.3 4.2E+02 0.0091 28.8 16.5 160 766-925 35-199 (204)
448 TIGR01541 tape_meas_lam_C phag 46.2 5.4E+02 0.012 30.0 17.0 144 767-924 5-150 (332)
449 cd07623 BAR_SNX1_2 The Bin/Amp 46.1 4.2E+02 0.0091 28.7 24.9 40 785-824 104-143 (224)
450 PF01496 V_ATPase_I: V-type AT 46.1 62 0.0013 40.4 8.1 18 756-773 146-163 (759)
451 TIGR02492 flgK_ends flagellar 46.1 3.6E+02 0.0077 30.7 13.3 65 800-874 137-205 (322)
452 PF07851 TMPIT: TMPIT-like pro 45.7 1.6E+02 0.0035 34.4 10.6 52 685-736 8-59 (330)
453 PRK09343 prefoldin subunit bet 45.5 3.2E+02 0.007 27.2 13.4 22 829-850 75-96 (121)
454 TIGR01612 235kDa-fam reticuloc 45.5 1.3E+03 0.028 34.1 25.8 240 662-914 1106-1382(2757)
455 PF06156 DUF972: Protein of un 45.2 2.1E+02 0.0046 28.4 10.0 44 822-865 12-55 (107)
456 PLN03086 PRLI-interacting fact 45.0 99 0.0021 38.3 9.3 13 1060-1072 19-31 (567)
457 COG1382 GimC Prefoldin, chaper 45.0 3E+02 0.0066 28.2 11.1 81 654-735 1-110 (119)
458 PF09403 FadA: Adhesion protei 44.8 1.5E+02 0.0033 30.3 9.1 73 663-735 48-122 (126)
459 PF12729 4HB_MCP_1: Four helix 44.7 2.8E+02 0.0061 26.3 17.4 42 866-907 108-149 (181)
460 cd00584 Prefoldin_alpha Prefol 44.5 1.8E+02 0.0039 28.4 9.4 104 704-845 1-128 (129)
461 PRK15178 Vi polysaccharide exp 44.5 1.6E+02 0.0035 35.5 10.7 103 655-757 207-332 (434)
462 PF10046 BLOC1_2: Biogenesis o 44.4 3E+02 0.0065 26.5 11.9 34 720-755 63-96 (99)
463 PF04420 CHD5: CHD5-like prote 44.2 76 0.0017 32.9 7.2 24 759-782 36-59 (161)
464 PF05483 SCP-1: Synaptonemal c 44.0 8.4E+02 0.018 31.6 32.7 33 892-924 449-481 (786)
465 KOG0243 Kinesin-like protein [ 44.0 9.7E+02 0.021 32.3 31.0 73 869-941 716-788 (1041)
466 PF08826 DMPK_coil: DMPK coile 43.9 2.5E+02 0.0054 25.7 9.3 21 827-847 34-54 (61)
467 PF07851 TMPIT: TMPIT-like pro 43.9 2.6E+02 0.0057 32.7 11.9 14 918-931 118-131 (330)
468 PF09738 DUF2051: Double stran 43.7 5.1E+02 0.011 30.0 14.0 7 940-946 174-180 (302)
469 PRK08871 flgK flagellar hook-a 43.1 3.5E+02 0.0076 33.9 13.6 67 796-865 136-209 (626)
470 PF03915 AIP3: Actin interacti 43.0 4E+02 0.0087 32.2 13.5 36 854-889 247-282 (424)
471 PF03148 Tektin: Tektin family 43.0 6.2E+02 0.013 29.7 26.3 31 663-693 60-90 (384)
472 PF12777 MT: Microtubule-bindi 43.0 5.7E+02 0.012 29.4 15.7 30 873-902 81-113 (344)
473 PF03194 LUC7: LUC7 N_terminus 42.9 4.6E+02 0.01 29.4 13.3 30 859-888 218-247 (254)
474 KOG2264 Exostosin EXT1L [Signa 42.8 1.9E+02 0.0041 36.3 10.9 72 767-868 79-150 (907)
475 cd00632 Prefoldin_beta Prefold 42.8 3.1E+02 0.0068 26.3 12.2 11 769-779 5-15 (105)
476 TIGR00763 lon ATP-dependent pr 42.8 3.5E+02 0.0076 34.4 13.8 144 709-867 120-278 (775)
477 TIGR03752 conj_TIGR03752 integ 42.7 2.6E+02 0.0057 34.2 12.0 59 804-869 66-125 (472)
478 PF05278 PEARLI-4: Arabidopsis 42.5 5.9E+02 0.013 29.3 16.0 36 839-874 214-249 (269)
479 PF05266 DUF724: Protein of un 42.5 4.7E+02 0.01 28.3 13.0 96 660-757 86-184 (190)
480 PF14942 Muted: Organelle biog 42.2 4.2E+02 0.0092 27.6 14.2 19 764-782 31-49 (145)
481 PHA01750 hypothetical protein 42.2 65 0.0014 30.2 5.5 31 804-834 42-72 (75)
482 smart00030 CLb CLUSTERIN Beta 42.0 2.9E+02 0.0063 30.6 11.2 39 892-941 70-108 (206)
483 PF15030 DUF4527: Protein of u 42.0 2.7E+02 0.0057 31.8 11.1 19 739-757 9-27 (277)
484 PRK09973 putative outer membra 41.9 1.9E+02 0.0042 28.1 8.8 48 827-883 33-80 (85)
485 COG0172 SerS Seryl-tRNA synthe 41.8 1.6E+02 0.0034 35.6 10.0 102 772-876 4-105 (429)
486 cd00179 SynN Syntaxin N-termin 41.8 3.5E+02 0.0076 26.6 13.4 122 820-946 1-129 (151)
487 smart00502 BBC B-Box C-termina 41.7 2.9E+02 0.0063 25.6 15.3 113 663-777 10-126 (127)
488 PF10368 YkyA: Putative cell-w 41.5 5E+02 0.011 28.2 18.2 181 662-863 13-202 (204)
489 PF07083 DUF1351: Protein of u 41.1 5.1E+02 0.011 28.2 14.5 107 663-775 42-156 (215)
490 COG5283 Phage-related tail pro 40.9 1.1E+03 0.024 32.2 24.0 200 666-893 21-231 (1213)
491 PF08647 BRE1: BRE1 E3 ubiquit 40.8 3.4E+02 0.0073 26.1 12.0 81 809-889 1-81 (96)
492 COG1256 FlgK Flagellar hook-as 40.8 8.2E+02 0.018 30.5 16.7 147 694-879 67-213 (552)
493 KOG0972 Huntingtin interacting 40.8 4.2E+02 0.009 31.1 12.6 100 663-762 248-358 (384)
494 PRK05683 flgK flagellar hook-a 40.6 3.9E+02 0.0085 33.9 13.6 91 772-865 109-209 (676)
495 KOG2391 Vacuolar sorting prote 40.5 4.6E+02 0.01 31.2 13.0 113 662-774 220-345 (365)
496 PRK12704 phosphodiesterase; Pr 40.4 7.9E+02 0.017 30.3 21.4 164 770-937 31-203 (520)
497 COG3064 TolA Membrane protein 40.4 1.4E+02 0.0031 35.0 9.0 68 1038-1105 145-216 (387)
498 PF08581 Tup_N: Tup N-terminal 40.4 3.3E+02 0.0072 25.9 11.4 71 802-872 2-76 (79)
499 KOG0240 Kinesin (SMY1 subfamil 40.3 8.8E+02 0.019 30.8 20.8 166 697-875 336-506 (607)
500 KOG2129 Uncharacterized conser 40.2 7.9E+02 0.017 30.2 22.4 221 656-878 60-331 (552)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.76 E-value=1.2e-15 Score=164.46 Aligned_cols=206 Identities=18% Similarity=0.309 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR---------- 731 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsa---------- 731 (1113)
...+..++..+...+..++++|+.++.++++++++|++|+.+++.++++.++++..+++..+++..++..
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888888888888888888777666666555555444443332
Q ss_pred -----------Hhhcc-cCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhH
Q 001257 732 -----------INMMK-NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQK 799 (1113)
Q Consensus 732 -----------L~KLR-NAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQK 799 (1113)
++..+ +..++..|.+.|.+|+|.++|.+||+.+|+++|++|++|++....+ ...
T Consensus 88 L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~--------------~k~ 153 (294)
T COG1340 88 LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA--------------KKA 153 (294)
T ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 11110 1369999999999999999999999999999999999999987652 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqn 879 (1113)
.....+++.|.+++++++.+...++.++.+|..+.++++.++..+..+.+.+....|++.+.+-.+++..++.|..|-+.
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34456777888888877777666665555555555555555444444444444444444444444444444444444433
Q ss_pred HH
Q 001257 880 KD 881 (1113)
Q Consensus 880 RR 881 (1113)
+.
T Consensus 234 ~~ 235 (294)
T COG1340 234 QN 235 (294)
T ss_pred HH
Confidence 33
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.91 E-value=4.9e-06 Score=91.31 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001257 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 818 kKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAR 887 (1113)
.++..+.++++++.++..+++.+|.+|..+.++++.++.++|.+++.+|++.|++|..|.+++..+...+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ 227 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELH 227 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455666677777777777777777777777777777777777777777777777777777665443
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.35 E-value=0.00039 Score=79.79 Aligned_cols=74 Identities=8% Similarity=0.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
++..+...+.+++..+...+..+..+..+...++.+|..|......+......+..+|..|+.++.+..+..+.
T Consensus 331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445455555555555555555555555555666666666666666665554443
No 4
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.00083 Score=81.18 Aligned_cols=30 Identities=10% Similarity=0.353 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
.+..+|..++.++..++..+..+..+++.+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555555443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.31 E-value=0.0011 Score=81.23 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAE 696 (1113)
.+..++..+..++..+......+..++..++.+
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~ 710 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQE 710 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444444333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.26 E-value=0.00081 Score=82.37 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
.+..++..++.++..+......+..++..+
T Consensus 685 ~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~ 714 (1164)
T TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDA 714 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.22 E-value=0.0023 Score=78.03 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
.+..+++.++.++..+......+..++..+..+...+..++..+..+...+..
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555555555555555555444444444333333
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.17 E-value=0.0063 Score=70.12 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQ 691 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELk 691 (1113)
+.++..++.+++.+......+..++.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.16 E-value=0.0032 Score=76.84 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~E 720 (1113)
..++..+..++.++..+......+..++..++.+...+..++..+..+...++..+..
T Consensus 680 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1179)
T TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555555555555555444444444444443333333333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.15 E-value=0.0025 Score=80.63 Aligned_cols=108 Identities=14% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ 885 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irK 885 (1113)
+..+..++...+..+..+..++..+..++.++..++..+...+..+..........+..++++....+..+-.++.....
T Consensus 809 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 888 (1163)
T COG1196 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433333333444444444444444444444444444444444444444444444444444444433333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 001257 886 ANDLASKGDREALQHLCVNQVERVLELWNN 915 (1113)
Q Consensus 886 ARELAakgdveELeelC~~EVEkFMelWNn 915 (1113)
...... .+..-...|..+++++...|+.
T Consensus 889 l~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 889 LEEELR--ELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 222210 1112223345666666666643
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.14 E-value=0.0058 Score=74.44 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001257 850 AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1113)
Q Consensus 850 ALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELA 890 (1113)
.+....+.+-..+..|+..........-.++..+..++.+.
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 449 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666665555555555666666666533
No 12
>PRK11637 AmiB activator; Provisional
Probab=98.14 E-value=0.0034 Score=71.36 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQs 730 (1113)
..++.++++++++|+++.+....+..+++....+...+..+|..+..++......+...-.+|..++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766666665555555555555555555544444444444443333333333333
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.11 E-value=0.0039 Score=78.95 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
...+..++..++.+++.+...++.+......+..++.++..++..+..++..+......+-+.+..++..+.+....|-.
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666677767777777766666677777777777777777777777777777777
Q ss_pred hHHHHHHHHHHH
Q 001257 879 YKDDTKQANDLA 890 (1113)
Q Consensus 879 nRR~irKARELA 890 (1113)
.+..+..++...
T Consensus 472 ~~~~~~~~~~~l 483 (1163)
T COG1196 472 LQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 777776666543
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.11 E-value=0.0026 Score=83.69 Aligned_cols=171 Identities=17% Similarity=0.280 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001257 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENV 820 (1113)
Q Consensus 741 VEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKL 820 (1113)
+..+.+.+..||-.+.-.-..|..|+++..+....++... ......+..+.....++..+..+++....++..+..++
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle--~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLE--GELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL 1085 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667778888888888889999999988884333322 22223344444444556666666766666777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------------HHHHHHh
Q 001257 821 IKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW-------QSLKKQAYDK--------------NQHFWKY 879 (1113)
Q Consensus 821 kkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeL-------keLRKERDEk--------------NkeFYqn 879 (1113)
......+..+.+.+.++...|.+|.+++.+-...|.++=..+ .+|+.+.++. ...|+..
T Consensus 1086 e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l 1165 (1930)
T KOG0161|consen 1086 EDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKL 1165 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555555444333 3333333332 1244545
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 001257 880 KDDTKQANDLASKGDREALQHLCVNQVERVLELWN 914 (1113)
Q Consensus 880 RR~irKARELAakgdveELeelC~~EVEkFMelWN 914 (1113)
|+.+..+. +.....+..|+..|...+...-+..-
T Consensus 1166 ~~~leee~-~~~e~~~~~lr~~~~~~~~el~~qle 1199 (1930)
T KOG0161|consen 1166 RRDLEEET-LDHEAQIEELRKKHADSLAELQEQLE 1199 (1930)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544332 22344556666666666666555543
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.11 E-value=0.0033 Score=74.39 Aligned_cols=210 Identities=17% Similarity=0.271 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEI 744 (1113)
+..++...+++..++.+....|..+...++.+-..|...|...+.+...+.....+.......|......|. ...++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--~q~~e~ 218 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--EQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 566666666666666666666666666666655555555555554444444433333333333333222222 123455
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 745 DarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLE 824 (1113)
..+|..||..|.+-+=...+--+++.+++.++..+++... ..+..++....+......+...+..+++.++.+|..++
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~--eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA--ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5677777777665554556666677777766655554211 11133333333333333333445556666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHH
Q 001257 825 AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK--------------QAYDKNQHFWKYKDDTKQ 885 (1113)
Q Consensus 825 eklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK--------------ERDEkNkeFYqnRR~irK 885 (1113)
..+.+.. .+..-|.+++.++...||.....+-.-|= +..+....|.+-|..+..
T Consensus 297 e~lqaSq-------q~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~ 364 (546)
T PF07888_consen 297 EQLQASQ-------QEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQH 364 (546)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 44444555555555555555444333222 334444566666665543
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.04 E-value=0.0084 Score=72.74 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRS 682 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQk 682 (1113)
.+..+|..++.++..+...
T Consensus 463 ~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 463 RIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444443
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.03 E-value=0.0011 Score=70.18 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q 001257 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (1113)
Q Consensus 667 AKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDa 746 (1113)
+||..++.++.....+...+..++.....++...-.++..|..++..+-..+..--..+......|..+. +..++.++
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e--~~~de~er 78 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE--KRADESER 78 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH--HHHHHHCH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3667777777777777777777777766666666666666655544443322221111112222222211 23333333
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHH----HHHHHHh-hhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 747 SIRNMEHRIAHETLPLKEEKQIIREIKQL----KQRREQI-SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVI 821 (1113)
Q Consensus 747 rIkrLE~RIQTgSLSLvEEKKLLKEIKQL----KKqRKkV-iAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLk 821 (1113)
..+.||.+..+..-.+..=-.-|+++... ......+ ..+......+..+...-+.+..+|+.|..+|..+...++
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 33344333333211111111111111111 1111110 001112233333334445777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001257 822 KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 822 kLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAR 887 (1113)
.++..-..+..+.+.+..+|..|..+++.+-..-+.|-.....|-.+.+.....++..+.....++
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999989999999999999999999999999999999999999999999999999987777665443
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=0.0083 Score=76.94 Aligned_cols=107 Identities=15% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCC---C-hHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETL---P-LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD 814 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSL---S-LvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELD 814 (1113)
.|+++|...|..++..+..-.- . ..+-.++-++|++|+.....+ -+.+.++.+.+..+..+..+|..|..++.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el---~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL---KSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877766422 1 222244456666665554332 22344444555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1113)
Q Consensus 815 ELRkKLkkLEeklKALkKK~DEIkaEIdELQEEL 848 (1113)
.++..+..+...+..+..++..+..++..+....
T Consensus 899 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666655555555555544444444444433333
No 19
>PRK11637 AmiB activator; Provisional
Probab=98.01 E-value=0.0049 Score=70.13 Aligned_cols=72 Identities=10% Similarity=0.218 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
....++.+|..++++|..++.....+..++..+..+-..+..++..+..++......+....++|..++..|
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777776666666666655555555555555555555555555554444444443
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=97.98 E-value=0.012 Score=71.62 Aligned_cols=51 Identities=16% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~Kq 713 (1113)
..+...++.+...+..+...+..+..++..+......+..++..+..++..
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~e 395 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555555555555555544444444444444444444333
No 21
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0051 Score=76.10 Aligned_cols=171 Identities=15% Similarity=0.203 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHHh--------hcCCCChHHH--HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEHRI--------AHETLPLKEE--KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL 809 (1113)
Q Consensus 740 SVEEIDarIkrLE~RI--------QTgSLSLvEE--KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaL 809 (1113)
....+..+|..|+.+. +.+..+-++| |||=.||.+|.+... +...+...++..|..+
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~-------------~~ke~e~~lq~e~~~~ 423 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN-------------DTKEQENILQKEIEDL 423 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh-------------hhhhHHHHHHHHHHHH
Confidence 4455666777777633 2344555554 788888888887743 2345555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 810 KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
..++.+.-.+++++...+.+...++++..+++.++..+++++...|+.++.+=++||..........-.+.+.++.+-.-
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r 503 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNR 503 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777788888888888888888888899999999999999999999999999988888777776666666544221
Q ss_pred HhcCCHHHHHHHHHHHH-----HHHHHHHhCChHHHHHH
Q 001257 890 ASKGDREALQHLCVNQV-----ERVLELWNNNDEFRKEY 923 (1113)
Q Consensus 890 AakgdveELeelC~~EV-----EkFMelWNnDkeFRkDY 923 (1113)
.-..=+..+...|..-- =-.|++..-+..|+--.
T Consensus 504 ~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tav 542 (1200)
T KOG0964|consen 504 SVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAV 542 (1200)
T ss_pred hhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHH
Confidence 11122222322221110 12467777777777543
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.93 E-value=0.0027 Score=68.68 Aligned_cols=164 Identities=17% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001257 692 TIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE 771 (1113)
Q Consensus 692 akRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKE 771 (1113)
.+.-+++.++..|+.+++++..++..+..+..+++.|......+. ..+.++.++|..++.++ ...-+..+=+.|-.|
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e--~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E 97 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE--SEIQEIRERIKRAEEKL-SAVKDERELRALNIE 97 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHH
Confidence 333444455555555555555555555555556665555544443 46677788899999999 443444444667778
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1113)
Q Consensus 772 IKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkAL 851 (1113)
|..++..+..+ ..+...+.+++..|.+++..++..+..++..+.+ +... +..++..+
T Consensus 98 ~~~ak~r~~~l-------------e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e-------~~~~---~e~e~~~i 154 (239)
T COG1579 98 IQIAKERINSL-------------EDELAELMEEIEKLEKEIEDLKERLERLEKNLAE-------AEAR---LEEEVAEI 154 (239)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHHH
Confidence 88877776542 1222233444444445555555444443333333 3333 55666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001257 852 DEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1113)
Q Consensus 852 dEkRDEAYEeLkeLRKERDEkNkeFYqnRR 881 (1113)
++.+...+.++..|....+..--.||+..+
T Consensus 155 ~e~~~~~~~~~~~L~~~l~~ell~~yeri~ 184 (239)
T COG1579 155 REEGQELSSKREELKEKLDPELLSEYERIR 184 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777777888888888777776667775443
No 23
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.0091 Score=73.98 Aligned_cols=245 Identities=12% Similarity=0.229 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVE 742 (1113)
.+|.+.++.++.+|+..+++.++++..++..-..|.....+...|+.+............+.+.+....|..++ .+..
T Consensus 681 ~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~--~~l~ 758 (1200)
T KOG0964|consen 681 KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK--TSLH 758 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHH
Confidence 34666677777777777777777777777766666655555555555554444444444444444444444443 3555
Q ss_pred HHHHHHHHHHHHhhcCC---CChHHHH---HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHH-H
Q 001257 743 DIDGSIRNMEHRIAHET---LPLKEEK---QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD-S 815 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgS---LSLvEEK---KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELD-E 815 (1113)
.+...-..+|..+.+.- |++.+.. ++=.+|.+|......+.+ .+-.|...+.++...+. .
T Consensus 759 ~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~-------------er~~~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 759 KLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE-------------ERIDIETRKTALEANLNTK 825 (1200)
T ss_pred HHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 55556666666665543 5666553 344566666555433211 11112223333333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 001257 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR 895 (1113)
Q Consensus 816 LRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdv 895 (1113)
|...++.+++.+..+. ......++...+.++..+..+...+..++..|...-+...+.--+.+..+-+++.|+.....
T Consensus 826 L~~r~~~l~~ei~~~~--d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~ 903 (1200)
T KOG0964|consen 826 LYKRVNELEQEIGDLN--DSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKD 903 (1200)
T ss_pred HHhhhhHHHHHhhhcc--cccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333332 12223455555566666666666677777777777777777777777777778877543322
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhh
Q 001257 896 EALQHLCVNQVERVLELWNNNDEFRKEYVNSN 927 (1113)
Q Consensus 896 eELeelC~~EVEkFMelWNnDkeFRkDYeKrn 927 (1113)
. +. ...++|+.|.+-+.-..=|++|.++|
T Consensus 904 ~-~~--~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 904 N-IN--FDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred h-hh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 33899999999888888888888863
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=0.017 Score=74.30 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdEL 700 (1113)
....+..+|..++.++..+......+..+...+..+...|
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666665444444444444433333333
No 25
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.80 E-value=0.19 Score=61.20 Aligned_cols=207 Identities=17% Similarity=0.216 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001257 696 SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-MMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQ 774 (1113)
Q Consensus 696 ERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~-KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQ 774 (1113)
-|.+|..++..|..+...+-..++..+.+++.|+..|. ++.. .-..|-|..|+.|...=+- | =|+.|.+=..
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEk--L----SK~ql~qs~i 475 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEK--L----SKKQLAQSAI 475 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH--h----HHHHHHHHHH
Confidence 35666666666666666666666666777776666553 2221 2345567777776432110 1 1566666555
Q ss_pred HHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 001257 775 LKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN--------------VIKAEAATQAVKKLHREESEK 840 (1113)
Q Consensus 775 LKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkK--------------LkkLEeklKALkKK~DEIkaE 840 (1113)
.+++|.+...+-.+.+ ...++|+.|..|.+.|+.- +.++.+.++-..+.|...+..
T Consensus 476 IkKLRAk~ke~etl~~----------K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~ 545 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEE----------KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRAL 545 (961)
T ss_pred HHHHHHHhhhhhHHHH----------HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5555544222111111 1123444444444433332 222333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH---hCCh
Q 001257 841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW---NNND 917 (1113)
Q Consensus 841 IdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelW---NnDk 917 (1113)
+..|+.+..++.+--|.||..+ .++..|- +-..++=+..+..||+-.-.-+ -..-
T Consensus 546 ~~~le~~~~a~qat~d~a~~Dl---------------------qk~nrlk-Qdear~~~~~lvqqv~dLR~~L~~~Eq~a 603 (961)
T KOG4673|consen 546 AAALEAQALAEQATNDEARSDL---------------------QKENRLK-QDEARERESMLVQQVEDLRQTLSKKEQQA 603 (961)
T ss_pred HHHHHHHHHHHHHhhhhhhhhH---------------------HHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444422 1111110 1112222233334444332222 2345
Q ss_pred HHHHHHHHhhhhhHhhhhhccCCC
Q 001257 918 EFRKEYVNSNIRSTLRRLKTLDGR 941 (1113)
Q Consensus 918 eFRkDYeKrnl~Sl~rRqlT~DGR 941 (1113)
++|++|.+.-..-|.||+.--.-|
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998755433
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.023 Score=71.65 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=20.8
Q ss_pred cCCCCCCCcccccccccCCccccCccccccccccccCCC
Q 001257 442 RDVPGNEALVPESEVVSGSVSSIPEDVNVENVGIQHAGG 480 (1113)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1113)
.|-||--. |+|+||-.+|---..-.|-+-.|..|
T Consensus 170 iD~~~~~~-----E~vp~s~~~ItRtA~~~NsSkY~Ing 203 (1293)
T KOG0996|consen 170 IDKPGGTY-----EVVPDSEFTITRTAFRDNSSKYYING 203 (1293)
T ss_pred eccCCCce-----eecCCCeeEEEehhhhCCCceEeECC
Confidence 46665432 88888877775555555555544433
No 27
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.66 E-value=0.12 Score=62.02 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKA--EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkL--EeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
.+++.+..+++.+..+|... .+.+..+.++++++..++.++..++..+..++..+...+..|+++..........
T Consensus 398 ~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 474 (650)
T TIGR03185 398 KELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKIN 474 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555431 2345556666666666666666666666666666666666666666554444433
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.61 E-value=0.043 Score=65.15 Aligned_cols=226 Identities=16% Similarity=0.235 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSR-----DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkR-----dAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~K 734 (1113)
|..+.|..+|+.+..++.+..... .+.+.-+..++..-..|...+..+=.-++.+...+=.. ++.|+.-.++
T Consensus 165 ~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~q---l~el~~gy~~ 241 (569)
T PRK04778 165 PALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQ---LQELKAGYRE 241 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHH
Confidence 567789999999988887766532 22333444444444444333333322223333322222 3333343333
Q ss_pred ccc--C-CCHHHHHHHHHHHHHHhhc-----CCCChHHH----HHHHHHHHHHHHHHHHhh-hcccchhHHHHHhhhHHH
Q 001257 735 MKN--A-ISVDDIDGSIRNMEHRIAH-----ETLPLKEE----KQIIREIKQLKQRREQIS-SSIGEHDEVQLAFDQKDQ 801 (1113)
Q Consensus 735 LRN--A-KSVEEIDarIkrLE~RIQT-----gSLSLvEE----KKLLKEIKQLKKqRKkVi-Anaa~rAkIQESidQKEa 801 (1113)
|.. + -..-.|+.+|..|..++.. +.+.|.+= ..|-.+|.+|-...++-. +.-.....+.........
T Consensus 242 m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~ 321 (569)
T PRK04778 242 LVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEH 321 (569)
T ss_pred HHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 331 1 1222344555555544444 33333333 334444444444432110 000000000000111123
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLREN----------VIKAEAATQAVKKL--------------HREESEKLKRLLGQFKAADEIRQE 857 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkK----------LkkLEeklKALkKK--------------~DEIkaEIdELQEELkALdEkRDE 857 (1113)
+.++...|..+++.|+.. ...+..+++.+.+. |+++..++..+.+++..+...+.+
T Consensus 322 ~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e 401 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK 401 (569)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 33344444444444 444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001257 858 AYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1113)
Q Consensus 858 AYEeLkeLRKERDEkNkeFYqnRR~irKARE 888 (1113)
..+.+..||+.-......+-.++..+...+.
T Consensus 402 i~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444444443333
No 29
>PRK01156 chromosome segregation protein; Provisional
Probab=97.60 E-value=0.12 Score=63.76 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
.+..+|..+.+++.+++.....|..++..+
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 502 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666655555555544443
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.59 E-value=0.12 Score=61.60 Aligned_cols=225 Identities=15% Similarity=0.265 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 001257 663 ENLREQIKAAQSKVDE-----KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK- 736 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeE-----LKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR- 736 (1113)
|.+...|-.+...+.. .+..-+.+...|+....+-..+...|..|.......|..+...++.++.++..+-..+
T Consensus 82 ~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~ 161 (569)
T PRK04778 82 PDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRF 161 (569)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4566666666665443 3344556677777778888888888888888888888888888888888888775444
Q ss_pred -cCCCHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHH----HHHHHHHhhh-------cc-cchhHHHHHhhh
Q 001257 737 -NAISVDDIDGSIRNMEHRIAH-----ETLPLKEEKQIIREIKQ----LKQRREQISS-------SI-GEHDEVQLAFDQ 798 (1113)
Q Consensus 737 -NAKSVEEIDarIkrLE~RIQT-----gSLSLvEEKKLLKEIKQ----LKKqRKkViA-------na-a~rAkIQESidQ 798 (1113)
...+...|+.+|..||..... .+--..+=+.+|.+|+. |+..-+.+=. .+ .-.++++....+
T Consensus 162 ~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~ 241 (569)
T PRK04778 162 SFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRE 241 (569)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 236888888888888876542 23333333334333322 2221111100 00 001111111111
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Q 001257 799 K---------DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADE--------------IR 855 (1113)
Q Consensus 799 K---------EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdE--------------kR 855 (1113)
. ..|..+|..|+.++......|..++ ++.+..+++.+..+|+.|+..+..-.. ..
T Consensus 242 m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l 319 (569)
T PRK04778 242 LVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFL 319 (569)
T ss_pred HHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1 1344566666666666555555555 566666666666666665554443332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 856 QEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 856 DEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
..+-+....|..+.+..+..|.-+-.....++.+
T Consensus 320 ~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~l 353 (569)
T PRK04778 320 EHAKEQNKELKEEIDRVKQSYTLNESELESVRQL 353 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhHHHHHHH
Confidence 3334444455555555555655433334334433
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.59 E-value=0.13 Score=64.88 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAAT-QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEekl-KALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
...++..|..++++++.+++.+..++++. +.+..+..+..+++..|..+...+..+...+-.+++.++..........+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34566778888888888888888888777 66666666666666666666666666666666666666666555555444
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCCCcCCCC
Q 001257 878 KYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPD 946 (1113)
Q Consensus 878 qnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DGR~lnPD 946 (1113)
.-++.+...+-- -+.+-..|+.+...+-++.+ .|= .|+-.+|.-..||-.-.-+-..||=
T Consensus 440 ~i~~~i~~l~k~-i~~~~~~l~~lk~~k~dkvs-------~FG-~~m~~lL~~I~r~~~~f~~~P~GPl 499 (1074)
T KOG0250|consen 440 HIEGEILQLRKK-IENISEELKDLKKTKTDKVS-------AFG-PNMPQLLRAIERRKRRFQTPPKGPL 499 (1074)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcccchhh-------hcc-hhhHHHHHHHHHHHhcCCCCCCCCc
Confidence 443332221111 12234555555555554443 344 6777777777776655444444443
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=97.56 E-value=0.12 Score=63.58 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYA 701 (1113)
Q Consensus 671 eLqKEIeELKQkRdAInaELkakRAERdELi 701 (1113)
....+|..+...-..|..++..+......+.
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 503 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLK 503 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.55 E-value=0.19 Score=54.47 Aligned_cols=64 Identities=17% Similarity=0.455 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEId 726 (1113)
..+...|..++..|..+...+..+..+++.++.....+..++......+..+...+...+++++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3467777777777777777777776666666666555555555555444444444444444443
No 34
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.54 E-value=0.12 Score=62.35 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE 840 (1113)
|-.+.+-|..-+..|.+.-..++.|++.++.+..+
T Consensus 493 IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 493 ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444
No 35
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.54 E-value=0.17 Score=60.88 Aligned_cols=49 Identities=16% Similarity=0.330 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE 710 (1113)
...+.++++.+++++..+......+..++..++.++..+..++..++.+
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766666666666666666666666555443
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.53 E-value=0.051 Score=68.44 Aligned_cols=145 Identities=15% Similarity=0.272 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhccc
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR--INMMKN 737 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsa--L~KLRN 737 (1113)
++...+...|..|+.++..++..-..+....+.++....++...++.|..++.+....+..++.+|..|+.. ..-+ .
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~-~ 732 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQV-D 732 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-c
Confidence 456678888999999988888877888888888888888888888888888888888888888888888873 1111 1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHH
Q 001257 738 AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMK 807 (1113)
Q Consensus 738 AKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIK 807 (1113)
-.+++++-.+|...+..|..--.++.+.+.=+..|....+... ..|.+.+..++..+...+++.+.++
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~--~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELE--EYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3688889999999999998887777777766666665544432 2344455555555554444444443
No 37
>PTZ00121 MAEBL; Provisional
Probab=97.49 E-value=0.072 Score=68.53 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=15.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHH
Q 001257 757 HETLPLKEEKQIIREIKQLKQRRE 780 (1113)
Q Consensus 757 TgSLSLvEEKKLLKEIKQLKKqRK 780 (1113)
-+-++..||.|.+.||.+.+..|.
T Consensus 1239 aEEAkraEEeR~~EE~Rk~Eear~ 1262 (2084)
T PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARM 1262 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777766666664
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.11 Score=66.08 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 848 LkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
+..+..++.++-.++..||++...++...+..|
T Consensus 551 l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 551 LPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443333333333333
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.47 E-value=0.16 Score=60.74 Aligned_cols=44 Identities=9% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~ 711 (1113)
+...|.+....+++....+..++..+.........++..|..+.
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333333333333333333
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.41 E-value=0.17 Score=67.67 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
..++.+..++.....+..++.+.+.++..+..++++.+..+..+++.++.+...+.++-+.+.+.|..+.+.-+.++...
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~ 1131 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLS 1131 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777777788888888889999999999999999999999999999999999999999988888777666
Q ss_pred HHHH
Q 001257 881 DDTK 884 (1113)
Q Consensus 881 R~ir 884 (1113)
..+.
T Consensus 1132 ~ele 1135 (1930)
T KOG0161|consen 1132 EELE 1135 (1930)
T ss_pred HHHH
Confidence 6554
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.38 E-value=0.19 Score=62.40 Aligned_cols=233 Identities=13% Similarity=0.221 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cc-----CCCHHHHHHHHHHHHH
Q 001257 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-------KN-----AISVDDIDGSIRNMEH 753 (1113)
Q Consensus 686 InaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL-------RN-----AKSVEEIDarIkrLE~ 753 (1113)
+...+.++..+..-|.+.+.+|+.++......+..|.+.+..++..+..+ +. -.-+.-|..+|..|+.
T Consensus 327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666666666666666666666555555543322 11 0122223333444443
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 001257 754 RIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKF--------LRKEADSLRENVIKAEA 825 (1113)
Q Consensus 754 RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKa--------LKKELDELRkKLkkLEe 825 (1113)
.+- ..++++-..-..|..+ ..+...-.....+.+++..++.+...|.. ...+++.+++++..++.
T Consensus 407 ~l~------ekd~ql~~~k~Rl~~~-~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~ 479 (775)
T PF10174_consen 407 QLR------EKDRQLDEEKERLSSQ-ADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA 479 (775)
T ss_pred HHH------HHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2344444444444410 00001111223334444444444444333 35667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-CHHHH------
Q 001257 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG-DREAL------ 898 (1113)
Q Consensus 826 klKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakg-dveEL------ 898 (1113)
.+..+.+++.+-...+..+..+.-.+.....+.+..|..|.......+..+-.-...+.+++..+-.. .+..|
T Consensus 480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~ 559 (775)
T PF10174_consen 480 KLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTR 559 (775)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHH
Confidence 78888888888777777788888888888888888888888888888887777666666643222111 22122
Q ss_pred ----HHHHHHHHHHHHHHHhCChHHHHHHHH
Q 001257 899 ----QHLCVNQVERVLELWNNNDEFRKEYVN 925 (1113)
Q Consensus 899 ----eelC~~EVEkFMelWNnDkeFRkDYeK 925 (1113)
-.-|.+||||.|...-.-..-+.+-.+
T Consensus 560 ~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ 590 (775)
T PF10174_consen 560 YREESEKAQAEVERLLDILREAENEKNDKEK 590 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 335789999999877555555555444
No 42
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.26 E-value=0.073 Score=66.70 Aligned_cols=219 Identities=16% Similarity=0.245 Sum_probs=102.5
Q ss_pred ccCceEEecCCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHH
Q 001257 648 KQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTR----SRDAIRDDIQTI-------R----ASYKEYAEKLEAAISDER 712 (1113)
Q Consensus 648 K~pFyYfVKVPRPDDEeLKAKIdeLqKEIeELKQ----kRdAInaELkak-------R----AERdELiEQLKeLReE~K 712 (1113)
+.|+|| +-=-.+....+...++.+..+|..+-+ .|=.=.++|... | .+.-.+...|..|+...+
T Consensus 113 k~S~y~-iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~ 191 (1072)
T KOG0979|consen 113 KESKYF-INDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEK 191 (1072)
T ss_pred CCccee-eccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Confidence 568884 555556777888888888888877664 222222222221 1 234555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh------cc
Q 001257 713 SARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS------SI 786 (1113)
Q Consensus 713 qlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViA------na 786 (1113)
++...+..+-..++.|.+.+.++. ++|+-+ .+..+....|.-|.+.++.|.- |.
T Consensus 192 ~Le~~~~~~~~~l~~L~~~~~~l~--kdVE~~------------------rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~ 251 (1072)
T KOG0979|consen 192 SLEDKLTTKTEKLNRLEDEIDKLE--KDVERV------------------RERERKKSKIELLEKKKKWVEYKKHDREYN 251 (1072)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHH------------------HHHHHHHHHHHHHHHhccccchHhhhHHHH
Confidence 666666666555555555555543 233322 2333444444444443332211 00
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 787 GEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 787 a~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
+-++...-...+...+.+.++.+...+..|+++..+...+.+.....+++....+.++.+.++.+.+...+++..+..|+
T Consensus 252 ~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 252 AYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000011111111222222222222222333333334444444444445555555555555566666666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 001257 867 KQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 867 KERDEkNkeFYqnRR~irKAR 887 (1113)
++........-+.+..+..++
T Consensus 332 ~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 332 KAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555554433
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.25 E-value=0.45 Score=61.31 Aligned_cols=73 Identities=16% Similarity=0.394 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
+.+.|+++++.+...|..+.....++...+.....+...+...+..+..+.+..+..+.....+...++..+.
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999988888888888877777777777777777666666666666666555555443
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.25 E-value=0.83 Score=59.04 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 681 QkRdAInaELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
+.+..++.+++.+++.-..+..+|+.|..++..|..
T Consensus 306 e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~ 341 (1201)
T PF12128_consen 306 ELRDELNKELSALNADLARIKSELDEIEQQKKDYED 341 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666555543
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.062 Score=65.82 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 001257 694 RASYKEYAEKLEA 706 (1113)
Q Consensus 694 RAERdELiEQLKe 706 (1113)
|++|.++..|...
T Consensus 415 rar~qem~~Qk~r 427 (1118)
T KOG1029|consen 415 RARRQEMLNQKNR 427 (1118)
T ss_pred HHHHHHHHhhhhH
Confidence 4777777766654
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.17 E-value=0.6 Score=54.64 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIds 727 (1113)
.-....++++.+++|.+++.+......+.+++..+...+...+..+..++.+.-..+....+.|..
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 333345666666676666666555555555555555555555555555544444444444333333
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.13 E-value=0.47 Score=51.54 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 001257 746 GSIRNMEHRIA 756 (1113)
Q Consensus 746 arIkrLE~RIQ 756 (1113)
.+|..|..+++
T Consensus 142 eEi~~L~~~~~ 152 (312)
T PF00038_consen 142 EEIEELREQIQ 152 (312)
T ss_dssp HHHHTTSTT--
T ss_pred hhhhhhhhccc
Confidence 34555555554
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.23 Score=62.57 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
....+|..|+.+++.++.++...+...+++..++.++++.+..+..++..+-...++...+.....-++.++...+-
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~ 916 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT 916 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence 33344445555555555555555544555554444444444444444444444444444444444444444444443
No 49
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.05 E-value=0.81 Score=54.77 Aligned_cols=225 Identities=16% Similarity=0.293 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 001257 663 ENLREQIKAAQSKVD-----EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK- 736 (1113)
Q Consensus 663 EeLKAKIdeLqKEIe-----ELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR- 736 (1113)
+++...+..+...+. +.++.-..+...+.....+-..+...|..|.......|..+....+.++.++..+-..+
T Consensus 78 ~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~ 157 (560)
T PF06160_consen 78 PEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF 157 (560)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555555443 23334445666666667777777777777777777777777777777777777665444
Q ss_pred -cCCCHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHH----HHHHHHHhhhc-------c-cchhHHHHHhhh
Q 001257 737 -NAISVDDIDGSIRNMEHRIAH-----ETLPLKEEKQIIREIKQ----LKQRREQISSS-------I-GEHDEVQLAFDQ 798 (1113)
Q Consensus 737 -NAKSVEEIDarIkrLE~RIQT-----gSLSLvEEKKLLKEIKQ----LKKqRKkViAn-------a-a~rAkIQESidQ 798 (1113)
...+.+.|+.++..||....+ .+--..+=+.+|.+|+. |+..-+.+=.+ + ...+++++...+
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~ 237 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYRE 237 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 236788888887777765542 22233333444444432 22221111000 0 001111111111
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Q 001257 799 K---------DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD--------------EIR 855 (1113)
Q Consensus 799 K---------EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd--------------EkR 855 (1113)
. ..+..+|+.++..+......|..++ ++.+....+++..+|+.|+..+..=. ...
T Consensus 238 m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~--l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l 315 (560)
T PF06160_consen 238 MEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLE--LDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYL 315 (560)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 1344566666666666666666655 66666666666666666654444322 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 856 QEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 856 DEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
..+...-+.|..+.+.....|.-+-..+..++.|
T Consensus 316 ~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l 349 (560)
T PF06160_consen 316 EHAKEQNKELKEELERVSQSYTLNHNELEIVREL 349 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 3333344444444444444444444444444444
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.02 E-value=1.6 Score=56.41 Aligned_cols=101 Identities=11% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q 001257 668 QIKAAQSKVDEKTRSRDAIRD-DIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAIna-ELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDa 746 (1113)
.+.+|+..|.+++..+..+.. +...+..+.+++..++...+++++.+...+..+..+++-++.....++ .+.+.+..
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~--~~~~kv~~ 543 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA--DSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHH
Confidence 334444455555555555553 323334555666666777777777777777777777776666554443 24444444
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHH
Q 001257 747 SIRNMEHRIAHETLPLKEEKQIIR 770 (1113)
Q Consensus 747 rIkrLE~RIQTgSLSLvEEKKLLK 770 (1113)
.-+.|+-+..-..--..+++++-.
T Consensus 544 ~rk~le~~~~d~~~e~~~~~kl~~ 567 (1317)
T KOG0612|consen 544 LRKQLEEAELDMRAESEDAGKLRK 567 (1317)
T ss_pred HHHHHHHhhhhhhhhHHHHhhHhh
Confidence 444444444443333444444433
No 51
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.01 E-value=0.51 Score=56.42 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
.-+..|..++..|......-..|...++.+...=..-+..+..|+..++.+|.
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK 150 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555543333333344444444443333
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.01 E-value=1.4 Score=58.89 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=103.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 758 ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQK-DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE 836 (1113)
Q Consensus 758 gSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQK-EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DE 836 (1113)
....+.+=+++-.+|.+|+...... -...+.+...+... +.++.+++.+..++..+.+++..++..-..+...+.+
T Consensus 1302 k~~d~~~~~kL~~ei~~Lk~el~~k---e~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e 1378 (1822)
T KOG4674|consen 1302 KDSDKNDYEKLKSEISRLKEELEEK---ENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSE 1378 (1822)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677788888888776521 11223333333322 4666777777777777777777777766777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HH
Q 001257 837 ESEKLKRLLGQFKAADEIR-----------QEAY--KHWQSLKKQAYDKNQHFWKYKDDTKQAN--------------DL 889 (1113)
Q Consensus 837 IkaEIdELQEELkALdEkR-----------DEAY--EeLkeLRKERDEkNkeFYqnRR~irKAR--------------EL 889 (1113)
.++++-++.....+.+..+ .++| .++..|++++.+.+.-+-..+....+.. .-
T Consensus 1379 ~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e 1458 (1822)
T KOG4674|consen 1379 KNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTE 1458 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHH
Confidence 7777666665555555443 2223 5556666666554333333222221111 11
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhC----ChHHHHHHHHhhhhhHhhhhhccCCCcCCCCCCCC
Q 001257 890 ASKGDREALQHLCVNQVERVLELWNN----NDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAP 950 (1113)
Q Consensus 890 AakgdveELeelC~~EVEkFMelWNn----DkeFRkDYeKrnl~Sl~rRqlT~DGR~lnPDEkPp 950 (1113)
--...+..+....+......-....+ .+.++++|..--.+.+..-.-..+=|+|-|.+.-+
T Consensus 1459 ~~~~~i~~~~e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~ 1523 (1822)
T KOG4674|consen 1459 RLLEEIKKLLETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQY 1523 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 11122333344444433333333333 34445555554455555556677888999998843
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.00 E-value=0.92 Score=54.62 Aligned_cols=36 Identities=6% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (1113)
Q Consensus 674 KEIeELKQkRdAInaELkakRAERdELiEQLKeLRe 709 (1113)
++|..||.+..-.+.+++-+-++-..|.-.|..|+.
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555555443
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.99 E-value=0.5 Score=62.34 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=47.4
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIR------------------------------DDIQTIRASYKEYAEK 703 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAIn------------------------------aELkakRAERdELiEQ 703 (1113)
|..+|.+-..+.++.|..|+.+++.+-..-..+. ..|..++.+|.++..+
T Consensus 773 ~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~ 852 (1486)
T PRK04863 773 FPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERA 852 (1486)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4777778899999999999998887765322221 2334446677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 704 LEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 704 LKeLReE~KqlReel~EKIKEId 726 (1113)
|..+..+..+.+..+..-...+.
T Consensus 853 l~~~~~~~~~~~~~~~~~~~~~~ 875 (1486)
T PRK04863 853 LADHESQEQQQRSQLEQAKEGLS 875 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666654444443333
No 55
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.97 E-value=0.6 Score=61.09 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK 703 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQ 703 (1113)
..+|++|+.+|.++......+.+++..+.+++..|...
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444444444333
No 56
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.94 E-value=0.52 Score=57.66 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA 695 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRA 695 (1113)
++.+++-.+|+.|.+.++.+...|++++.+++.+|.
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566677788888888888888888888888887653
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.92 E-value=2.5 Score=56.26 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH----HHHHHHHHHHhhhcccchhH--HHHHhhhH-------HHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE----IKQLKQRREQISSSIGEHDE--VQLAFDQK-------DQIEEK 805 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKE----IKQLKKqRKkViAnaa~rAk--IQESidQK-------EaIqEQ 805 (1113)
-|.++|...+...+.+++.-.-.+.+-++-+.. +++|++....+....+.... .|...-.. ..+-++
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 488899999888888887777666655444433 34444444444333222211 11111100 011122
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLRENVIK---AEAAT--------------QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 806 IKaLKKELDELRkKLkk---LEekl--------------KALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
+-.++.++.+|+..+.. +..-+ ..+..-..+..+.+..+......+.+.|...-..+..|..+
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~ 594 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333331111 00011 12222233333444555555555666666665555555555
Q ss_pred HHHHHH---HHHHhHHHHHHHHHHH
Q 001257 869 AYDKNQ---HFWKYKDDTKQANDLA 890 (1113)
Q Consensus 869 RDEkNk---eFYqnRR~irKARELA 890 (1113)
...... .|.++...+.+-++..
T Consensus 595 i~~l~~~ap~W~~a~~al~~L~eq~ 619 (1486)
T PRK04863 595 IQRLAARAPAWLAAQDALARLREQS 619 (1486)
T ss_pred HHHHHHhChHHHhhHHHHHHHHHhc
Confidence 544443 7888888888777774
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.90 E-value=0.3 Score=53.47 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
+|+.++.++..+.-++..+...+++++++...++..+-++..+...+...+...-.++..+++.+.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777766666666666655555555555555443
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.87 E-value=0.3 Score=60.11 Aligned_cols=140 Identities=21% Similarity=0.344 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 001257 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1113)
Q Consensus 686 InaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEE 765 (1113)
|+++|+..|..=.+|+.+|..|..-.+.++..+..++++.+.|+..+..|.. +-..=...|..||.+ |.+|
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~--aRq~DKq~l~~LEkr-------L~eE 500 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ--ARQQDKQSLQQLEKR-------LAEE 500 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------HHHH
Confidence 4455555566666666666666665566666666677777776666655531 111112236666666 4455
Q ss_pred HHHHHHH-HHHHHHHH---Hhhhcccchh--HHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREI-KQLKQRRE---QISSSIGEHD--EVQLAF-DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHR 835 (1113)
Q Consensus 766 KKLLKEI-KQLKKqRK---kViAnaa~rA--kIQESi-dQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~D 835 (1113)
++.=..+ +||...|+ ..... +.++ ..+... +--+....+.+.|..|++.||.+++..++.+..+...+.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~-aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEK-AARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHh-hhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333 23333332 21110 1111 000001 111234445555555666666655555555555544443
No 60
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.85 E-value=0.97 Score=53.74 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDE 857 (1113)
.++..+..|+.+|...+..+..++.........+..+..++..+..++..+...-.+
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 444444455555555555555555444444444455555555555555444433333
No 61
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.83 E-value=2 Score=52.47 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 844 LQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
++.++..+.+.....-.++..|..+++.....+-+|.
T Consensus 207 l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 207 LQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444443
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.82 E-value=1.5 Score=51.44 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAER 697 (1113)
.+...|..+.+.|....+.+..|..+|+.+..+-
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i 75 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 63
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=1 Score=57.21 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 897 ALQHLCVNQVERVLELW 913 (1113)
Q Consensus 897 ELeelC~~EVEkFMelW 913 (1113)
+-+..|++|+..++..|
T Consensus 878 ~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 878 AKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHhhhHHHhhhhhHH
Confidence 33444555555555555
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.75 E-value=0.9 Score=50.84 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT--------I----RASYKEYAEKLEAAIS 709 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELka--------k----RAERdELiEQLKeLRe 709 (1113)
|..+-+.--..+|.+-|.+-+..-..+.+++.. + -..|..+..+++-++.
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~ 129 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKT 129 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344444444445555555544444444444322 1 1456667777766654
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.75 E-value=0.29 Score=58.65 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF 848 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEEL 848 (1113)
+++..++-.++.||.++.+++..-..+.+++++|+.++.+-+..+
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~ 340 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF 340 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh
Confidence 334444444444444444444444444545555444443333333
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.73 E-value=1.7 Score=58.21 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1113)
Q Consensus 667 AKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQs 730 (1113)
.....+.+.|..+.++-..+..+.+.+|.+++.++.+|..+..++..+.-.+.....++..|+.
T Consensus 52 q~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~ 115 (1822)
T KOG4674|consen 52 QQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRR 115 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 3344555566666666666666666666666666666666666555555554444444444443
No 67
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.41 Score=60.70 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 798 QKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
....++++++.++..+..+...++.+...++++..-+.++...+++|+...-.+..+-.++..++..++.+.......++
T Consensus 403 ~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~ 482 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRH 482 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 34577788899999998888998999988999998999999999999999988888888888999988888888888888
Q ss_pred HhHHHHHHHH
Q 001257 878 KYKDDTKQAN 887 (1113)
Q Consensus 878 qnRR~irKAR 887 (1113)
..-|.++...
T Consensus 483 e~sR~~~~~e 492 (1141)
T KOG0018|consen 483 EGSRRSRKQE 492 (1141)
T ss_pred ccHHHHHHHH
Confidence 7776665443
No 68
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.71 E-value=2.8 Score=52.73 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 001257 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkV 782 (1113)
...+|..+...|+..+++- +.......+=..++.|...+..+
T Consensus 601 ~~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~l 642 (908)
T COG0419 601 KLKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEKL 642 (908)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777 55555555556666666665553
No 69
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.68 E-value=0.4 Score=59.99 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHH
Q 001257 834 HREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLC 902 (1113)
Q Consensus 834 ~DEIkaEIdELQEELk-ALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC 902 (1113)
++++++++.+.+.++. .|.++.|.+--+++.|..+.+......|.+--.|.|.|+|.++-+ ..|+++.
T Consensus 477 lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~ 545 (1243)
T KOG0971|consen 477 LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELT 545 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445566555555544 677888889888899999999999999999999999999976542 3344443
No 70
>PRK09039 hypothetical protein; Validated
Probab=96.67 E-value=0.47 Score=53.72 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
|...|...++++..+...-.++-..+.--+.....+...|..++.++..++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5666777777777776666666666666778888888888888777665444
No 71
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.61 E-value=1.6 Score=49.68 Aligned_cols=116 Identities=14% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 001257 665 LREQIKA---AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI---------------------SDERSARESLKS 720 (1113)
Q Consensus 665 LKAKIde---LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLR---------------------eE~KqlReel~E 720 (1113)
|..|.++ +.++++++...|++....+..++.++..|..+.+++. .-+...|..-..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 3444443 3456777777777777777777666666655555544 111233333333
Q ss_pred HHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 001257 721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 721 KIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKqRKkV 782 (1113)
...|+..|++.+..+. ..+.-|...|+++.-..+.... .+.+--.+|.++..++.+..++
T Consensus 84 L~~Ev~~Lrqkl~E~q--GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQ--GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHh--chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443332 2333344444443332222221 1255567777777777776553
No 72
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.53 E-value=2.9 Score=54.25 Aligned_cols=39 Identities=31% Similarity=0.298 Sum_probs=32.1
Q ss_pred cchhhhccccCCCCcccccccccccccccccccccccch
Q 001257 387 TEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTA 425 (1113)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1113)
.-|||||...+|-++--...|--.+--|.-+-+|.+.|.
T Consensus 243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF 281 (1317)
T KOG0612|consen 243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF 281 (1317)
T ss_pred cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence 469999999999888878888888888888888887775
No 73
>PTZ00121 MAEBL; Provisional
Probab=96.51 E-value=4.9 Score=53.13 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=6.2
Q ss_pred cccCccccccccc
Q 001257 462 SSIPEDVNVENVG 474 (1113)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (1113)
..-|.-.++.|..
T Consensus 908 tKCPPR~PLkn~k 920 (2084)
T PTZ00121 908 EKCPPRFPLKSKS 920 (2084)
T ss_pred ccCCCCCCCCCCc
Confidence 3445445555543
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=3 Score=52.05 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
+++.+++.|...+..+|-.+-..+..+..+.+.++-.-.+|+.|+.+++++.+.-.++.-+.+.|
T Consensus 448 tLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444444444444444444444444444444444444444444444433333333333
No 75
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.43 E-value=2.8 Score=53.47 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=29.5
Q ss_pred cccCCccccCccccccccccc-cCCCCCCccchhHHhhhccccccCCcCCchhHHHHh
Q 001257 456 VVSGSVSSIPEDVNVENVGIQ-HAGGEKDDHRSKELEENMETEFTGEESDDLVCKEVL 512 (1113)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1113)
.++|||+.| .++|.-+- |.---.-. -=||----.|..-++++|-=+|
T Consensus 17 f~~GsIvrI----~l~NF~Ty~~~e~~pgp------sLNmIiGpNGSGKSSiVcAIcL 64 (1072)
T KOG0979|consen 17 FPDGSIVRI----ELHNFLTYDHTEFLPGP------SLNMIIGPNGSGKSSIVCAICL 64 (1072)
T ss_pred CCCCceEEE----EEeeeeeeeeeeecCCC------ceeeEECCCCCCchHHHHHHHH
Confidence 678999998 77776542 11000000 1266666678888999998765
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.40 E-value=1.8 Score=53.01 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 001257 846 GQFKAADEIRQEAYKHWQ-------SLKKQAYDKNQHFWKYKDDTKQANDLASKGD 894 (1113)
Q Consensus 846 EELkALdEkRDEAYEeLk-------eLRKERDEkNkeFYqnRR~irKARELAakgd 894 (1113)
.++..+...|+..+.+++ .|-.+...++..|+.--..+...+-.-.+|.
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~ 278 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK 278 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444455555544444 4455666777776655555555554444443
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.40 E-value=1.1 Score=47.97 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdEL 700 (1113)
..++..+...+.....++..+-+++..+..+..-|
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l 48 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL 48 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555544433333
No 78
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.30 E-value=1.4 Score=52.51 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001257 861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1113)
Q Consensus 861 eLkeLRKERDEkNkeFYqnRR~irKARELA 890 (1113)
.+..|.++..+..+.|..+-..+.+.|.-+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777766666666555
No 79
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.28 E-value=1.6 Score=56.82 Aligned_cols=192 Identities=10% Similarity=0.159 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN 819 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkK 819 (1113)
..+....+|..+-....|......-...+..|-..+...+..+..- ....+....+.......+..++.++-
T Consensus 796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke---~E~~~k~~~~~~~~i~~l~~~~~e~k----- 867 (1294)
T KOG0962|consen 796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKE---IECLQKEVIEQEREISRLINLRNELK----- 867 (1294)
T ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4455566777777777775555554455555555533333222110 00011111111111112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 001257 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ 899 (1113)
Q Consensus 820 LkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELe 899 (1113)
.....+...-.+...+..++..|+++...++..++++-+.+..|+...++....|++-....+. -++.++..+..+.
T Consensus 868 --~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~in 944 (1294)
T KOG0962|consen 868 --EEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDIN 944 (1294)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 2222233333455566688888999999999999999999999999999999999987766554 3343444444443
Q ss_pred HHHHHHHHHHHHHHhCChHHHH----HHHHhhhhhHhhhhhccCCCcCCCC
Q 001257 900 HLCVNQVERVLELWNNNDEFRK----EYVNSNIRSTLRRLKTLDGRSLGPD 946 (1113)
Q Consensus 900 elC~~EVEkFMelWNnDkeFRk----DYeKrnl~Sl~rRqlT~DGR~lnPD 946 (1113)
.=+..|.....-+..||. +|-..+++....|+..+|+|++.--
T Consensus 945 ----e~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~ 991 (1294)
T KOG0962|consen 945 ----EKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIK 991 (1294)
T ss_pred ----HHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777775 3445677889999999998887543
No 80
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.28 E-value=3.4 Score=48.37 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ 885 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irK 885 (1113)
+..+.+|+......+...-+.+....++++....+|..-.+.+.+--.+-+.+-....-|-.+.....++|..|++....
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q 291 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443333333344444444444444444444444433444444445555555666677777778887765
Q ss_pred HHHHHhcCCHHH
Q 001257 886 ANDLASKGDREA 897 (1113)
Q Consensus 886 ARELAakgdveE 897 (1113)
+--+. .|.+-+
T Consensus 292 ~~a~~-rGQvla 302 (499)
T COG4372 292 AAATQ-RGQVLA 302 (499)
T ss_pred HHHHH-HHHHHH
Confidence 54443 455443
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.21 E-value=2.2 Score=45.39 Aligned_cols=89 Identities=15% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID 745 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEID 745 (1113)
--+|..|+.+|..+...-.++..+.+.++.-..---..|.........+=..+...-.|++.|+..|++... ..-++.
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~--~~r~~~ 88 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE--QERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345666666666666666666666666553222222222222223344444566777777778877766542 334444
Q ss_pred HHHHHHHHHhh
Q 001257 746 GSIRNMEHRIA 756 (1113)
Q Consensus 746 arIkrLE~RIQ 756 (1113)
.+|...+..+.
T Consensus 89 ~klk~~~~el~ 99 (194)
T PF15619_consen 89 RKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 82
>PRK09039 hypothetical protein; Validated
Probab=96.20 E-value=0.81 Score=51.89 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
.++..+..++...+......+..+..|+.++..++.++..|+..+.++.++..++...|..|.......
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555556666666666666666666666666666666666666665554443
No 83
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.17 E-value=4.3 Score=48.48 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
..+..+..+|+..+..|......+..+...+.-|+.+|.....++..+...-..+...+..|..+......
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 34555566666666666555555555555555555555555555555555444444444444444444333
No 84
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.16 E-value=2.9 Score=49.86 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--------------HHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTI----------RASYKEYAEKLEAAISDER--------------SARES 717 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkak----------RAERdELiEQLKeLReE~K--------------qlRee 717 (1113)
...|+..|..-..+|+.++..|+.|..++... -++|-+|...|..+..+.. +.-..
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 34566777777777777777777776666553 2566666655554433333 23334
Q ss_pred HHHHHHHHHHHHHHHhhcc-------c-----------C-----------CCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 001257 718 LKSKRQEIDSVQSRINMMK-------N-----------A-----------ISVDDIDGSIRNMEHRIAHETLPLKEEKQI 768 (1113)
Q Consensus 718 l~EKIKEIdsLQsaL~KLR-------N-----------A-----------KSVEEIDarIkrLE~RIQTgSLSLvEEKKL 768 (1113)
+..+...++.|...|..-+ + + +++.+|+..|..+-+..+..+|+|.|-..-
T Consensus 412 lek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~ 491 (622)
T COG5185 412 LEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN 491 (622)
T ss_pred HHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhh
Confidence 4555556666666554332 1 0 489999999999999999999999988665
Q ss_pred HHH-HHHHHHHH
Q 001257 769 IRE-IKQLKQRR 779 (1113)
Q Consensus 769 LKE-IKQLKKqR 779 (1113)
++- |..|....
T Consensus 492 ~~~~i~El~~~l 503 (622)
T COG5185 492 LKHDINELTQIL 503 (622)
T ss_pred HHhHHHHHHHHH
Confidence 543 44444443
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.16 E-value=3.6 Score=53.21 Aligned_cols=99 Identities=14% Similarity=0.264 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCHHHHHHHHHH
Q 001257 673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA--ISVDDIDGSIRN 750 (1113)
Q Consensus 673 qKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNA--KSVEEIDarIkr 750 (1113)
+.+|...+..-.++...+...+.+-++...+-+.+..+-+..+...++-+++++.|.+.++.+-.. .+.+.| +.
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si----~~ 1496 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSI----EE 1496 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH----HH
Confidence 333333333333344444444444444445555555555666666666666676666666554321 233333 23
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 001257 751 MEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (1113)
Q Consensus 751 LE~RIQTgSLSLvEEKKLLKEIKQLKKqRK 780 (1113)
|=.++---.|+|.- .+|.+|-....
T Consensus 1497 vA~~vL~l~lp~tp-----eqi~~L~~~I~ 1521 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTP-----EQIQQLTGEIQ 1521 (1758)
T ss_pred HHHHHHhccCCCCH-----HHHHHHHHHHH
Confidence 33333334455543 35666665543
No 86
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.14 E-value=1.6 Score=53.14 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
.+-.+...||++++.+..+-+.-|.-..+|
T Consensus 509 KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 509 KILSDTRELQKEINSLTGKLDRTFTVTDEL 538 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333455566666666666666666655544
No 87
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.14 E-value=3.2 Score=46.75 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ 882 (1113)
.+..+...-..++.++..+..+|++..+-|..-++-+......+++....+..|-++-......|-.+-..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~ 273 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKA 273 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55556656666667777777777777777777777777777888888777777766655555555444433
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.08 E-value=2.4 Score=47.10 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSR 683 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkR 683 (1113)
+...+..++..++.++..+....
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEV 97 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH
Confidence 33455556666666655554443
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.06 E-value=3.6 Score=46.59 Aligned_cols=50 Identities=8% Similarity=-0.065 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT--------I----RASYKEYAEKLEAAIS 709 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELka--------k----RAERdELiEQLKeLRe 709 (1113)
|..+-+.---.+|.+-|.+-+..-.++.++... + -..|.-+..|++-++.
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~ 124 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKT 124 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445444444445555555444433333333322 1 1456666666665544
No 90
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.00 E-value=1.4 Score=50.97 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 702 EKLEAAISDERSARESLKSKRQEIDSVQSR 731 (1113)
Q Consensus 702 EQLKeLReE~KqlReel~EKIKEIdsLQsa 731 (1113)
+++..+..++...+..+......++.|++.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333344433
No 91
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.00 E-value=2.5 Score=47.54 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=59.2
Q ss_pred HHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 779 REQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (1113)
Q Consensus 779 RKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEA 858 (1113)
|.++-.|...+.+.++++. ...+-+...++|++...+++..++.....+..+++..+..|-.+.++...........
T Consensus 215 r~QL~~Y~~Kf~efq~tL~---kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~ 291 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQDTLN---KSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKL 291 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777776555 3345566788899988888888888888888888888888888877766555444444
Q ss_pred HHHHHHH
Q 001257 859 YKHWQSL 865 (1113)
Q Consensus 859 YEeLkeL 865 (1113)
-..+..|
T Consensus 292 ~~k~~kL 298 (309)
T PF09728_consen 292 KKKIEKL 298 (309)
T ss_pred HHHHHHH
Confidence 4433333
No 92
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.86 E-value=7.8 Score=48.84 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR 694 (1113)
.+.+.+..++..|..+++.++...+.+..+.
T Consensus 132 ~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~ 162 (775)
T PF10174_consen 132 RLRKTLEELQLRIETQQQTLDKADEEIEKLQ 162 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554443
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.83 E-value=5.9 Score=52.32 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY 700 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdEL 700 (1113)
-..+|..+|+.++.+|..+...+.++...+..+..++..+
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567788888888888877777777777777766554443
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.69 E-value=1.2 Score=45.08 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 690 LkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
|..+|.+.+....+...+.++.+.+......+=.+|.+|+..+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777776666766666666666666543
No 95
>PF13514 AAA_27: AAA domain
Probab=95.59 E-value=11 Score=48.64 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=6.4
Q ss_pred hhccccccccC
Q 001257 108 AELGDQKFESG 118 (1113)
Q Consensus 108 ~~~~~~~~~~~ 118 (1113)
-++|..-|..|
T Consensus 112 gdlg~~Lf~ag 122 (1111)
T PF13514_consen 112 GDLGQLLFSAG 122 (1111)
T ss_pred hHHHHHHHHhc
Confidence 34666666655
No 96
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=8.2 Score=47.03 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 742 EEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKk 781 (1113)
+-|...+..|.++|.--.++..+=+++-.|-.+|.+....
T Consensus 311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777788888888888887777777554
No 97
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=7.9 Score=49.94 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
+.|+.+.+.|..+|.++..+|. ++......+..|...++-++-+..+.+..+.....|+..+.+.+.++
T Consensus 655 ~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677888888888888888555 66677777777877777777777777777777777777666665544
No 98
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.51 E-value=10 Score=47.81 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqn 879 (1113)
++..|+-.|-+.|-++..+.+++.+|.|+.+.+-..+..|++.+..+....+.+....-++..|.|+.....|.+
T Consensus 331 qkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444444444444444455555555565555566666666666666666666655555566666655555443
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.48 E-value=11 Score=47.75 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
|.-.|+..+.+++.+|..+..+-..+-.+++++.+-+..+.++++...-++...+..+...++++
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455666666666666665555555555555555555555555555444444444444443333
No 100
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.44 E-value=3.9 Score=47.46 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELka 692 (1113)
|+..+.+.+..++.++..+...+..|.++++.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888887777777666654
No 101
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.40 E-value=11 Score=47.53 Aligned_cols=9 Identities=22% Similarity=0.483 Sum_probs=6.6
Q ss_pred CCCCCCccC
Q 001257 945 PDEEAPLIR 953 (1113)
Q Consensus 945 PDEkPpvip 953 (1113)
|++..||--
T Consensus 456 ~~~~CPvCg 464 (908)
T COG0419 456 AGEKCPVCG 464 (908)
T ss_pred CCCCCCCCC
Confidence 788888743
No 102
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.38 E-value=8.4 Score=46.75 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 810 KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
-++|+++++.+..+-+.+.+-...|..+...+..+.+.+..+.....++.++++.||+.--+
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~ 414 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELE 414 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44455555555555444555555667777777778888888888888888888888875444
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.35 E-value=6.3 Score=44.32 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKT 680 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELK 680 (1113)
+|+..|.+-+..+.++.
T Consensus 79 EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 79 ELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444443
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.24 E-value=4 Score=50.81 Aligned_cols=101 Identities=15% Similarity=0.320 Sum_probs=60.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccCCCH
Q 001257 666 REQIKAAQSK-VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES---LKSKRQEIDSVQSRINMMKNAISV 741 (1113)
Q Consensus 666 KAKIdeLqKE-IeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRee---l~EKIKEIdsLQsaL~KLRNAKSV 741 (1113)
..-+..++.+ |..+...|.+|...++.++.++..-..+|..+.++++.++.. +.++++++..-|+.|
T Consensus 542 ~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L--------- 612 (717)
T PF10168_consen 542 SQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL--------- 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3344445555 566666788888888888877777777777777766665543 345555555444433
Q ss_pred HHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHRIAH--ETLPLKEEKQIIREIKQLKQRR 779 (1113)
Q Consensus 742 EEIDarIkrLE~RIQT--gSLSLvEEKKLLKEIKQLKKqR 779 (1113)
.+|++.|=..++. -.|+. .||++.+|+..++...
T Consensus 613 ---~~R~~~vl~~l~~~~P~LS~-AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 613 ---MKRVDRVLQLLNSQLPVLSE-AEREFKKELERMKDQL 648 (717)
T ss_pred ---HHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHHH
Confidence 3344444333333 22443 3588888877776654
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=1.6 Score=54.56 Aligned_cols=71 Identities=7% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
++...+++..+.+++..+..+..++..++..-.+|.-+.+.|.++...+........++++-|+..|++.+
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34445566666667776666666666666665666555566666655555555566666666666666443
No 106
>PF13166 AAA_13: AAA domain
Probab=95.19 E-value=10 Score=45.85 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=6.7
Q ss_pred CChHHHHHHHHH
Q 001257 660 YDDENLREQIKA 671 (1113)
Q Consensus 660 PDDEeLKAKIde 671 (1113)
|..++++.+|..
T Consensus 265 ~l~~~~~~~l~~ 276 (712)
T PF13166_consen 265 PLSEERKERLEK 276 (712)
T ss_pred CCcHHHHHHHHH
Confidence 345566666654
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.14 E-value=2.3 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlR 715 (1113)
+....+.+.+...++.+.+....+-.+|.++..+...|-.+|..+..++..++
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554444444444444433333
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=7.5 Score=43.55 Aligned_cols=52 Identities=8% Similarity=0.266 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (1113)
Q Consensus 669 IdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~E 720 (1113)
|.+++++...+...-..|.+++..+..+++++..++..+.++.+.++..+..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444433333
No 109
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=94.94 E-value=6.6 Score=42.37 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 846 EELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
.++..+-..-..+|..+..|+....++.. ||
T Consensus 241 ~~r~~~~~~l~~a~~~y~el~~~l~eG~~-FY 271 (296)
T PF13949_consen 241 KERESALQRLEAAYDAYKELSSNLEEGLK-FY 271 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH
Confidence 44455555566777888888887777777 55
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=8.2 Score=43.29 Aligned_cols=38 Identities=21% Similarity=0.466 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEA 706 (1113)
Q Consensus 669 IdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKe 706 (1113)
|...+.++..+...-..|-.+|+.+-++-.++..+++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~ 70 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDE 70 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 111
>PRK10869 recombination and repair protein; Provisional
Probab=94.87 E-value=7.6 Score=46.80 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001257 861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1113)
Q Consensus 861 eLkeLRKERDEkNkeFYqnRR~irKARELA 890 (1113)
.+..|.++..+..+.|......+.++|.-+
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444443
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.83 E-value=9.4 Score=43.58 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001257 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 810 KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAR 887 (1113)
..+....+.+|..+-.++-.+..++..+..+-.+|+..+.+.++.....-.++..|++.+.+...-|...+..+++-|
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444555555555666666667777788888888888888888888888888887777777776665443
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.72 E-value=3.6 Score=47.73 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHH----HHHHHHHHHHHHHHH
Q 001257 743 DIDGSIRNMEHRIAHETLPLKEE----KQIIREIKQLKQRRE 780 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgSLSLvEE----KKLLKEIKQLKKqRK 780 (1113)
.+..+|..|+-++..-.....++ +.+-++|..|++...
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 44444555544444322222221 344456666666543
No 114
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=94.66 E-value=3.5 Score=52.87 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 001257 862 WQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD--REALQHLCVNQ 905 (1113)
Q Consensus 862 LkeLRKERDEkNkeFYqnRR~irKARELAakgd--veELeelC~~E 905 (1113)
..++|++.-+.+..|..-+.+.-+.-+|.++-+ +-.|++||..-
T Consensus 1300 a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1300 AQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345566666667777776666666666665553 67889999864
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.50 E-value=7.7 Score=47.66 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=27.7
Q ss_pred CceEEecCCCCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 650 PFYFLVKVPRYDDENLREQIKAAQSKVDE---KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 650 pFyYfVKVPRPDDEeLKAKIdeLqKEIeE---LKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
+..+-|.+.- .+|++-+.|..+-.+.-- +..++........-+..+..++..++.....+...|+.
T Consensus 154 s~ii~Is~~~-~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 154 TRIIAIEFRS-EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred cEEEEEEEec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555 456666666543332211 11112222222233344445555555554444444443
No 116
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.49 E-value=12 Score=43.21 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHH-HhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRRE-QISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1113)
Q Consensus 766 KKLLKEIKQLKKqRK-kViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdEL 844 (1113)
|.+|.++.+-..+.+ +..-|++.+.+.|..+. ...+-+...+.|+..+-+++.+++.+.--...+++..+..+-.|
T Consensus 207 k~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~---KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~l 283 (391)
T KOG1850|consen 207 KIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLA---KSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQL 283 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445555555444433 23346666666665544 22344556677888888888888866666677777777666555
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 001257 845 LGQF-------KAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR 895 (1113)
Q Consensus 845 QEEL-------kALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdv 895 (1113)
..+. ..+..+++.+-.=.++|+.+|.+.|. .++++.+++..
T Consensus 284 a~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~----------~~~~~e~~v~~ 331 (391)
T KOG1850|consen 284 AEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNK----------KLEDLEAQVSA 331 (391)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----------HHHHHhcccch
Confidence 5442 22333333333333445555555554 56667555543
No 117
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=16 Score=44.61 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHh
Q 001257 902 CVNQVERVLELWN 914 (1113)
Q Consensus 902 C~~EVEkFMelWN 914 (1113)
++++|++.+++..
T Consensus 440 aqaevdrlLeilk 452 (654)
T KOG4809|consen 440 AQAEVDRLLEILK 452 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 3566777766653
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.42 E-value=8.3 Score=41.11 Aligned_cols=100 Identities=16% Similarity=0.326 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q 001257 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746 (1113)
Q Consensus 667 AKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDa 746 (1113)
+.|..|..+|..++..-......+..+..+-..|.+-|+.+..+...++..+.. +..-+..|..++ .....++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k--~rl~~~ek 100 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLK--ARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHH
Confidence 456666666666666555555566666666666666666666665555553333 333333333333 24556788
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 001257 747 SIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 747 rIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkV 782 (1113)
+|..|.|..+- +.+...+|.+.|..+
T Consensus 101 ~l~~Lk~e~ev----------L~qr~~kle~ErdeL 126 (201)
T PF13851_consen 101 ELKDLKWEHEV----------LEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 88888886553 445566666666654
No 119
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.39 E-value=10 Score=43.52 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCC--CChH----HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHET--LPLK----EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE 812 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgS--LSLv----EEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKE 812 (1113)
..+.+||+||..||..|.+++ |+.- .-+-|+.-|..|......+- -...+.|..+++.|..+
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~------------~~~Ld~i~~rl~~L~~~ 276 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLD------------PAKLDSIERRLKSLLSE 276 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHH
Confidence 478999999999999999943 2222 25678888888888754421 02345777888888888
Q ss_pred HHHHHHHH
Q 001257 813 ADSLRENV 820 (1113)
Q Consensus 813 LDELRkKL 820 (1113)
++.|.+..
T Consensus 277 ~~~l~~~~ 284 (388)
T PF04912_consen 277 LEELAEKR 284 (388)
T ss_pred HHHHHhcc
Confidence 88776543
No 120
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.37 E-value=16 Score=44.10 Aligned_cols=41 Identities=7% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 001257 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 741 VEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKk 781 (1113)
++.|...|..|.+++..-.+++.+=+.+.+|=.+|-+....
T Consensus 346 i~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 346 IKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDK 386 (622)
T ss_pred HHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455567888888888888888888888888888777654
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.34 E-value=22 Score=45.68 Aligned_cols=255 Identities=18% Similarity=0.261 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR-----------------ASYKEYAEKLEAAISDERSARESLKSKRQ 723 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakR-----------------AERdELiEQLKeLReE~KqlReel~EKIK 723 (1113)
+...|.+++.+|..+++.++.+|.+=..++..+- .+...|..+|+..|.+.+++.+.-.....
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888888899999888888887666665541 23334444444444444444444444444
Q ss_pred HHHHHHHHHhhccc--------C----CCHHHHHHHHHHHHH-------HhhcC-----CCChHHHHHHHHHHHHHHHHH
Q 001257 724 EIDSVQSRINMMKN--------A----ISVDDIDGSIRNMEH-------RIAHE-----TLPLKEEKQIIREIKQLKQRR 779 (1113)
Q Consensus 724 EIdsLQsaL~KLRN--------A----KSVEEIDarIkrLE~-------RIQTg-----SLSLvEEKKLLKEIKQLKKqR 779 (1113)
+|..+...+-.+-= + .-++-+..+|..|+- .|+-+ ..+-.+=|+|=.+=.+|+...
T Consensus 305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 44433332221110 0 122233333333322 22211 123333344433333343332
Q ss_pred HHhhhccc-chhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001257 780 EQISSSIG-EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD------ 852 (1113)
Q Consensus 780 KkViAnaa-~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd------ 852 (1113)
=.++...+ .+- .+..+-+|+.-.+.++..++.....|+.+++.....|..|+++++++-
T Consensus 385 VrLRDlsA~ek~--------------d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV 450 (1243)
T KOG0971|consen 385 VRLRDLSASEKQ--------------DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMV 450 (1243)
T ss_pred HHHHhcchHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 22111110 000 011233444445555555555555566666666666666666666543
Q ss_pred ----------HHHHH----HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 001257 853 ----------EIRQE----AY---KHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNN 915 (1113)
Q Consensus 853 ----------EkRDE----AY---EeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNn 915 (1113)
+.|-+ -. +.+..+-+++-+.|. +.-.++++--|++ +|.+++|+.--.+..|...-+-.+
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~---ele~DLreEld~~-~g~~kel~~r~~aaqet~yDrdqT 526 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNR---ELELDLREELDMA-KGARKELQKRVEAAQETVYDRDQT 526 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHHHH
Confidence 11111 12 222222233333332 2233445555554 788899988888888888777777
Q ss_pred ChHHHHHHHHhhhhhHhhhh
Q 001257 916 NDEFRKEYVNSNIRSTLRRL 935 (1113)
Q Consensus 916 DkeFRkDYeKrnl~Sl~rRq 935 (1113)
=..||+---+ |.+.++-+
T Consensus 527 I~KfRelva~--Lqdqlqe~ 544 (1243)
T KOG0971|consen 527 IKKFRELVAH--LQDQLQEL 544 (1243)
T ss_pred HHHHHHHHHH--HHHHHHHH
Confidence 7888876544 44444433
No 122
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.24 E-value=1.2 Score=48.39 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=36.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 789 HDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 789 rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
...|.+.+...+....-|..+++|++.|..+.....+++..|+ .+|+.|..-++.+...|.+..+.+..|+
T Consensus 17 k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~-------~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 17 KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN-------QDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443344344556666666666666555555555555 5555555555555544544444444333
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.21 E-value=1.2 Score=50.25 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=27.5
Q ss_pred ccccceeeeeCcccccccccccCCCccccccccccccCCCCCCCcccccc
Q 001257 565 DKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVE 614 (1113)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (1113)
+-+---+|+.|-+.+.--|...-.|-|++.+- .+|.+-|.+++
T Consensus 48 ~~sl~~~v~A~~~~iP~LElY~~sC~EL~~~I-------~egr~~~~~~E 90 (312)
T smart00787 48 DCSLDQYVVAGYCTVPLLELYQFSCKELKKYI-------SEGRDLFKEIE 90 (312)
T ss_pred CCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33444567777788777777888888887653 24455555543
No 124
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.09 E-value=12 Score=43.65 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAI 686 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAI 686 (1113)
...++.++..++.++..+...+..+
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777777777776666543
No 125
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.05 E-value=28 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSR 683 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkR 683 (1113)
+..|..++++++.-+.-+.+.+
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~ 1442 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAK 1442 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666555554443
No 126
>PF13166 AAA_13: AAA domain
Probab=94.02 E-value=17 Score=44.05 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDI 690 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaEL 690 (1113)
.+...+..+...++.+......+...+
T Consensus 281 ~~~~~~~~l~~~~~~~~~~~~~~~~~l 307 (712)
T PF13166_consen 281 EYEKLIEELEKAIKKLEKAIENIIEQL 307 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554444443333
No 127
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=20 Score=43.92 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 711 ERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 711 ~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
...+...+.+|..|++.|++....|+
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665554444
No 128
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.96 E-value=13 Score=41.50 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTR 681 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQ 681 (1113)
+...++.++..++.++..+..
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888777766544
No 129
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=20 Score=43.88 Aligned_cols=145 Identities=14% Similarity=0.247 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHH-----HHHHHHHHHhhcCCCChHHHHHHH
Q 001257 695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID-----GSIRNMEHRIAHETLPLKEEKQII 769 (1113)
Q Consensus 695 AERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEID-----arIkrLE~RIQTgSLSLvEEKKLL 769 (1113)
++-..|..++-.|..+++++|..+..++.|.+.|-+...++....+--|++ ..|+.+-+ .|-++|
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~Kf----------RE~Rll 169 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKF----------REARLL 169 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 455567777788888888888888888888877776655554211111221 12222222 244555
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL---RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1113)
Q Consensus 770 KEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaL---KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQE 846 (1113)
.+-+.|+..- -.++.++..| .-|+..+|-.++-+++.+.-++ .++.+...
T Consensus 170 seYSELEEEN--------------------IsLQKqVs~LR~sQVEyEglkheikRleEe~elln-------~q~ee~~~ 222 (772)
T KOG0999|consen 170 SEYSELEEEN--------------------ISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN-------SQLEEAIR 222 (772)
T ss_pred HHHHHHHHhc--------------------chHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 5555554431 1233334344 2355666666666665555544 23222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 847 QFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 847 ELkALdEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
-..-+..+..+|..-++.=|+++..+.+.+
T Consensus 223 Lk~IAekQlEEALeTlq~EReqk~alkkEL 252 (772)
T KOG0999|consen 223 LKEIAEKQLEEALETLQQEREQKNALKKEL 252 (772)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222334456677777665555555544433
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.76 E-value=8.3 Score=48.02 Aligned_cols=204 Identities=16% Similarity=0.248 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSV 741 (1113)
-..|++.|..|+.+|+..++.=.+|+.++..+-+....+..+|..++.+..+++..+....+....=++.|..+- +-+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE--krL 497 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE--KRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 346778888888888888877777888877777766678888888888777666644443332222111111111 112
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD-QKDQIEEKMKFLRKEADSLRENV 820 (1113)
Q Consensus 742 EEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESid-QKEaIqEQIKaLKKELDELRkKL 820 (1113)
.+..+.=..||.+ |.+||+-=++=.. ...|....+ ...+.+-.+..- .+.+++.+++.|+.|+......+
T Consensus 498 ~eE~~~R~~lEkQ-------L~eErk~r~~ee~-~aar~~~~~-~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 498 AEERRQRASLEKQ-------LQEERKARKEEEE-KAARALAQA-QATRQECAESCRQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHhHHHH-hhhhccccc-hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444444 3444433222100 111211000 111111112122 22355556666666666666666
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 821 IKAEAATQAVKK--------------LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 821 kkLEeklKALkK--------------K~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
..++.++.++.+ .+..++++-.-|.+.|.+=+..+.++|..|..-|.|........
T Consensus 569 ~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 569 RELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQL 638 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555544442 22222233333333333444555556666665555555544433
No 131
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=27 Score=44.55 Aligned_cols=87 Identities=7% Similarity=0.086 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAA-DEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVE 907 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkAL-dEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVE 907 (1113)
++.|.-.++...+..+.+.++-+ .+.|-+..--|.+-.+++-..-..||..+..-+..... ++-|
T Consensus 674 el~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~--------------ae~e 739 (988)
T KOG2072|consen 674 ELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAI--------------AERE 739 (988)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HHHH
Confidence 44444444444444444444432 25566666666666666666667888665554433333 4557
Q ss_pred HHHHHHhCChHHHHHHHHhhhh
Q 001257 908 RVLELWNNNDEFRKEYVNSNIR 929 (1113)
Q Consensus 908 kFMelWNnDkeFRkDYeKrnl~ 929 (1113)
.-|..|+.-.-|+.+|.+--..
T Consensus 740 ~~vk~k~~l~rm~~d~~~f~e~ 761 (988)
T KOG2072|consen 740 SAVKDKKRLSRMYDDRDKFKEH 761 (988)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 7799999988888888774333
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.61 E-value=6.5 Score=38.99 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAA 851 (1113)
Q Consensus 839 aEIdELQEELkAL 851 (1113)
..+..|..+.+-|
T Consensus 112 ~r~~dL~~QN~lL 124 (132)
T PF07926_consen 112 QRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 133
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.57 E-value=0.02 Score=69.37 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
.++..+..++.++..++.++.....+++.+.-++..|.+++.++...+.....++..||....
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555666666555555555555555554333
No 134
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.56 E-value=13 Score=46.79 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.5
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 001257 659 RYDDENLREQIKAAQSKVD 677 (1113)
Q Consensus 659 RPDDEeLKAKIdeLqKEIe 677 (1113)
.|..+.|..+|+.|..+++
T Consensus 454 ~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 454 KPSELALNEMIEKLKKEID 472 (762)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 4556667777776666655
No 135
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.54 E-value=14 Score=45.55 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001257 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1113)
Q Consensus 702 EQLKeLReE~KqlReel~EKIKEIdsLQsaL~K 734 (1113)
.+|..|..++...+..+......++.++..+..
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777776666666666666666543
No 136
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.45 E-value=10 Score=46.56 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdEL 844 (1113)
.+|..|-+++...+..|..++.+++.- .-|++|+.++.-|
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiL 356 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSIL 356 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHH
Confidence 334444444444444333333333332 2444555444433
No 137
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=93.40 E-value=16 Score=40.96 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 844 LQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
...++..+-..-..||..+..|+.-..++.+ ||+
T Consensus 289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~-FY~ 322 (342)
T cd08915 289 SLDPREEALQDLEASYKKYLELKENLNEGSK-FYN 322 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 3455566666677778888888887777776 553
No 138
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.38 E-value=14 Score=40.16 Aligned_cols=23 Identities=30% Similarity=0.318 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001257 867 KQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 867 KERDEkNkeFYqnRR~irKAREL 889 (1113)
.+........-+.+..+..|..+
T Consensus 234 ~~~~~~~~~L~~a~~~L~~a~~l 256 (264)
T PF06008_consen 234 EQQNEVSETLKEAEDLLDQANDL 256 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444
No 139
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.38 E-value=38 Score=45.10 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
.+..+++.+..++..+..++.... +.....++.-|..++..+..+..-+.......-..+..+|.++.
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677777776666665555 44444444444444444444444444444444444555555444
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=19 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCccchhHHhhhccccccCCcCCch
Q 001257 482 KDDHRSKELEENMETEFTGEESDDL 506 (1113)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1113)
.+||++.+|-+---+--||...+++
T Consensus 455 dn~~~kEeLlrV~l~~~~gn~p~tl 479 (970)
T KOG0946|consen 455 DNDQLKEELLRVPLAVDTGNDPDTL 479 (970)
T ss_pred HhHHHHHHHHhhhhcccCCCCchHH
Confidence 3567777777766666666665554
No 141
>PRK10869 recombination and repair protein; Provisional
Probab=93.32 E-value=15 Score=44.39 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhh
Q 001257 862 WQSLKKQAYDKNQHFWKYKDDTKQANDL-ASK-GDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRL 935 (1113)
Q Consensus 862 LkeLRKERDEkNkeFYqnRR~irKAREL-Aak-gdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRq 935 (1113)
|+.|...+.---.....|+..+.+--+. ... .+..+|+..+..--+.++.+=..-...|+.+-+....++..-+
T Consensus 308 l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L 383 (553)
T PRK10869 308 QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESM 383 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433334555555554332222 111 1466677666666677777777778889888887766664433
No 142
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.21 E-value=15 Score=39.97 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 001257 868 QAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 868 ERDEkNkeFYqnRR~irKAREL 889 (1113)
+........-.....+..|+.+
T Consensus 228 k~~~l~~~~~~~~~~L~~a~~~ 249 (264)
T PF06008_consen 228 KKQELSEQQNEVSETLKEAEDL 249 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444
No 143
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.88 E-value=2.7 Score=51.94 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
...+..+|..|..++..++..+..+......+...+.+....+..++.++..+...-.+.+ ....+|+++...--++--
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 3445556777777777777777777777777777777777666666555555555555555 444444443333333333
Q ss_pred hHHHHHHHHH
Q 001257 879 YKDDTKQAND 888 (1113)
Q Consensus 879 nRR~irKARE 888 (1113)
|-|+....|-
T Consensus 315 nIRV~CRvRP 324 (670)
T KOG0239|consen 315 NIRVFCRVRP 324 (670)
T ss_pred CceEEEEecC
Confidence 4444433333
No 144
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=92.68 E-value=18 Score=43.03 Aligned_cols=93 Identities=13% Similarity=0.286 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRk 818 (1113)
.+++++..+.+.|.+ ||++++++++.|.+....+ ...+..+..+..
T Consensus 176 ~~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l--------------------~~~l~e~~~~~~---- 221 (447)
T KOG2751|consen 176 VSEEDLLKELKNLKE----------EEERLLQQLEELEKEEAEL--------------------DHQLKELEFKAE---- 221 (447)
T ss_pred cchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH----
Confidence 466777766666653 7888888888888876543 122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 819 KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
.+.++-..+.+.|...+-++-+.+.+++.+..+|.=+-..++.||+.
T Consensus 222 ---~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 222 ---RLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 22223345556666667777778899999999999999999988885
No 145
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.56 E-value=14 Score=48.31 Aligned_cols=95 Identities=12% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT---IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 659 RPDDEeLKAKIdeLqKEIeELKQkRdAInaELka---kRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
.|+...++.+++++.+. +.-. ...+...++. .-.+.+++..+.+.+......+-....+..+++..+++.....
T Consensus 22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~ 98 (1109)
T PRK10929 22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSV 98 (1109)
T ss_pred CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 37778899998887663 1111 1112222211 1233344444444444444333333333333333222211111
Q ss_pred ccCCCHHHHHHHHHHHHHHhh
Q 001257 736 KNAISVDDIDGSIRNMEHRIA 756 (1113)
Q Consensus 736 RNAKSVEEIDarIkrLE~RIQ 756 (1113)
..-.|..+|+.++.....+++
T Consensus 99 ~~~~s~~~Leq~l~~~~~~L~ 119 (1109)
T PRK10929 99 PPNMSTDALEQEILQVSSQLL 119 (1109)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 011467888877776666543
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.56 E-value=2.3 Score=47.93 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
.+-..++.+.-++..++++++.+..+.+-+..++..||+
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555556666666666666666655554
No 147
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.52 E-value=32 Score=41.95 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE 818 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRk 818 (1113)
..+.+|+.+|-.|-|++.| .|+-+=..|..++...... ++.++. .|..=-+.+.+.+..++.
T Consensus 358 ~~lkDLd~~~~aLs~rld~------qEqtL~~rL~e~~~e~~~~---------~r~~le---kl~~~q~e~~~~l~~v~e 419 (531)
T PF15450_consen 358 RQLKDLDDHILALSWRLDL------QEQTLNLRLSEAKNEWESD---------ERKSLE---KLDQWQNEMEKHLKEVQE 419 (531)
T ss_pred HHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677778888888887654 2444444555554433211 111111 111111233444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 819 KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
+++.+-..+..|+.+++-++.+++- -++.+-..-|..+.++|.++.......--.+...
T Consensus 420 KVd~LpqqI~~vs~Kc~~~Ksd~d~------kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~ 478 (531)
T PF15450_consen 420 KVDSLPQQIEEVSDKCDLHKSDSDT------KIDTEGKAREREVGAVRQELATLLSSVQLLKEDN 478 (531)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhhh------hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5555555555666555555544322 2344556668888889998888777655444443
No 148
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.39 E-value=14 Score=46.55 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDE 678 (1113)
Q Consensus 665 LKAKIdeLqKEIeE 678 (1113)
|+.+++-|+.++.+
T Consensus 484 Lk~kL~~Lr~E~sK 497 (762)
T PLN03229 484 LQERLENLREEFSK 497 (762)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544443
No 149
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.34 E-value=46 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 001257 764 EEKQIIREIKQLKQRREQISSSI 786 (1113)
Q Consensus 764 EEKKLLKEIKQLKKqRKkViAna 786 (1113)
.+|.++.|-.+|...-..+...+
T Consensus 437 ~~K~L~~E~ekl~~e~~t~~~s~ 459 (1195)
T KOG4643|consen 437 LEKKLQFELEKLLEETSTVTRSL 459 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 35666666666666555443333
No 150
>PRK11281 hypothetical protein; Provisional
Probab=92.33 E-value=14 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 659 RYDDENLREQIKAAQSKVDEKTRSRD----------AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (1113)
Q Consensus 659 RPDDEeLKAKIdeLqKEIeELKQkRd----------AInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsL 728 (1113)
.|+...++++|+++.+. +....... ....+++..+++.++|..++..+-++.+..+ ++++.+
T Consensus 35 ~p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~-------~~Le~L 106 (1113)
T PRK11281 35 LPTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ-------AELEAL 106 (1113)
T ss_pred CCCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHh
Confidence 47777788888887652 11111111 1222223333444444444444444433333 334333
Q ss_pred HHHHhhcc----cCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 001257 729 QSRINMMK----NAISVDDIDGSIRNMEHRIAHETLPLKEE 765 (1113)
Q Consensus 729 QsaL~KLR----NAKSVEEIDarIkrLE~RIQTgSLSLvEE 765 (1113)
++...... ...|..+|+.++.+++..++...=.|.+.
T Consensus 107 k~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 107 KDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred hccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33111110 12577889999998888777765555555
No 151
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.21 E-value=40 Score=42.39 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK----- 880 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR----- 880 (1113)
|+.+...+..||+++..-..-+.++...-..++.++..-.+++..+.-+..+.-.++..+.+.+.+++..|..--
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~ 668 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSI 668 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 344444444444443333333333444444444444444444555555555555566666666666666555422
Q ss_pred ------HHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHh
Q 001257 881 ------DDTKQANDLASK--GDREALQHLCVNQVERVLELWN 914 (1113)
Q Consensus 881 ------R~irKARELAak--gdveELeelC~~EVEkFMelWN 914 (1113)
....++|-.|.. +..++..--|+-.+--+++|.-
T Consensus 669 ~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALME 710 (786)
T PF05483_consen 669 SEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALME 710 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 223455555433 3566666677766655555553
No 152
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.88 E-value=22 Score=44.64 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 837 ESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 837 IkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
-.+.+..|.+++..+...-.+....|...++++-.....++
T Consensus 417 ~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA 457 (717)
T PF09730_consen 417 DQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA 457 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34677777788888887778877777777777655554433
No 153
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.79 E-value=29 Score=39.91 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~ 711 (1113)
+.+..+|..|+++ -..++.++...|.+...|...++.|++..
T Consensus 23 ~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 44466678888888888888888887654
No 154
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.76 E-value=22 Score=38.47 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHHhh
Q 001257 740 SVDDIDGSIRNMEHRIA 756 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQ 756 (1113)
.++.|..+|..|+..++
T Consensus 93 ~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444554444443
No 155
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.69 E-value=23 Score=38.58 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
+....+|+.+-..|.+--.....++-.+..|.+.++++..++.....++..+....|.++..+.
T Consensus 140 d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 140 EKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666555554444444555556666666666666666666666666666666665553
No 156
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=38 Score=40.82 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD---EIRQ----EAYKHWQSLKKQAYD 871 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd---EkRD----EAYEeLkeLRKERDE 871 (1113)
+.....+|+++.+-+...+..|-+.-..+++|+|+.+-+...++--..=.+.+- .+.| .||+-+..|-.-..+
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~e 463 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCME 463 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777777777888777777766443332222221 2222 344444444333333
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 001257 872 KNQHFWKYKDDTKQANDLASKGDREALQ 899 (1113)
Q Consensus 872 kNkeFYqnRR~irKARELAakgdveELe 899 (1113)
...-.-.+=+..++.++|..+=..+.+.
T Consensus 464 i~E~i~~tg~~~revrdlE~qI~~E~~k 491 (521)
T KOG1937|consen 464 ILEMIRETGALKREVRDLESQIYVEEQK 491 (521)
T ss_pred HHHHHHHcchHHHHHHHHHHHHhHHHHH
Confidence 3334444455667788886555544443
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.51 E-value=18 Score=45.38 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCHHH--HHHH
Q 001257 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM-MKNAISVDD--IDGS 747 (1113)
Q Consensus 671 eLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~K-LRNAKSVEE--IDar 747 (1113)
++++.+..++..+..-..+|..++.+|..+.+.-..|.++++.+.+.-....+.++.+...+.. ++ ..|.+| .-++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P-~LS~AEr~~~~E 640 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLP-VLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 3444444555555555556666666666666666666666555555444444444444333322 12 134433 3334
Q ss_pred HHHHHHHhh
Q 001257 748 IRNMEHRIA 756 (1113)
Q Consensus 748 IkrLE~RIQ 756 (1113)
++.|..+++
T Consensus 641 L~~~~~~l~ 649 (717)
T PF10168_consen 641 LERMKDQLQ 649 (717)
T ss_pred HHHHHHHHH
Confidence 555555443
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.48 E-value=38 Score=40.63 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakR 694 (1113)
+..++..+.-.+.++.+.+..++.++..++
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~ 136 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQ 136 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444454443
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.40 E-value=7.1 Score=39.05 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001257 885 QANDLASKGDREALQHLCVNQVERVL 910 (1113)
Q Consensus 885 KARELAakgdveELeelC~~EVEkFM 910 (1113)
.+.+| +.|+..|+.+|..||+..|
T Consensus 97 ~veEL--~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 97 EVEEL--RADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhC
Confidence 44555 6788999999999998653
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.23 E-value=13 Score=40.40 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 848 FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 848 LkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
...+...-+.+-.+|..+|..++.....|-.-|+.+..=|+-
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKek 174 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEK 174 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677777788888888888888888888765554
No 161
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.20 E-value=33 Score=39.36 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 001257 741 VDDIDGSIRNME 752 (1113)
Q Consensus 741 VEEIDarIkrLE 752 (1113)
+..+..+|..++
T Consensus 256 i~~l~~~l~~le 267 (444)
T TIGR03017 256 IQNLKTDIARAE 267 (444)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.12 E-value=4.6 Score=45.57 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
+..+.+++..+..+...+.++++++.+...++..++..+..+...+.....+.+...+.+.-++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~ 110 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIE 110 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555566666666666666666666666666555544444
No 163
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=42 Score=40.49 Aligned_cols=108 Identities=19% Similarity=0.394 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRS----RDAIRDDIQTIRASYKEY------AEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQk----RdAInaELkakRAERdEL------iEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
.+|..++..+++.+..+++. |-.+-.+.-.+|.....+ +.++..+.+.+.+.-..++.+-.....|++.|
T Consensus 296 aKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsel 375 (521)
T KOG1937|consen 296 AKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSEL 375 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555566666665555553 333333322222211110 34455555555555555555555555677777
Q ss_pred hhcccC-------CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 001257 733 NMMKNA-------ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780 (1113)
Q Consensus 733 ~KLRNA-------KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRK 780 (1113)
.++... .-+.||+.-|+.++--|. ||+.+-.+|+++..
T Consensus 376 e~lp~dv~rk~ytqrikEi~gniRKq~~DI~----------Kil~etreLqkq~n 420 (521)
T KOG1937|consen 376 EKLPDDVQRKVYTQRIKEIDGNIRKQEQDIV----------KILEETRELQKQEN 420 (521)
T ss_pred hcCCchhHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 766531 367788888888776665 45555555555543
No 164
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.95 E-value=54 Score=41.81 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChH
Q 001257 684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLK 763 (1113)
Q Consensus 684 dAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLv 763 (1113)
.++..++.+++..-.+.++-+-.|..-+..++..++....+|+.|.+.|..-+ .+-.+++..+..+..-+++-+-.|.
T Consensus 836 i~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~--~tq~~~~~~~d~~~~~~e~~~~~l~ 913 (1259)
T KOG0163|consen 836 IAGIRKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPR--ITQREMNSEYDVAVKNYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444333344443333333344556666666667777766654322 5678888888888887777777776
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 001257 764 -EEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 764 -EEKKLLKEIKQLKKqRKk 781 (1113)
.|++.+.+.+.|++.-+.
T Consensus 914 sk~~q~~~e~er~rk~qE~ 932 (1259)
T KOG0163|consen 914 SKEQQQIEELERLRKIQEL 932 (1259)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 788888887777776544
No 165
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.68 E-value=43 Score=39.84 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 689 DIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1113)
Q Consensus 689 ELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIds 727 (1113)
++...+.+|..-+.+|...+.+.+..+..+..-.+++-+
T Consensus 96 ~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~k 134 (499)
T COG4372 96 EKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666555555554444444433
No 166
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.64 E-value=3.9 Score=46.15 Aligned_cols=71 Identities=34% Similarity=0.479 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhccc
Q 001257 708 ISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIG 787 (1113)
Q Consensus 708 ReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa 787 (1113)
+.++++-...+.++--||+.|+..|.+|+ .+=|+.+-.+.|.++. | |.+=+||+||++-.+.+.++.+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQLA-----L---KEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQLA-----L---KEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444455556677888888888887 3456666666666643 4 3455788899888887766555
Q ss_pred chh
Q 001257 788 EHD 790 (1113)
Q Consensus 788 ~rA 790 (1113)
.++
T Consensus 142 ekD 144 (305)
T PF15290_consen 142 EKD 144 (305)
T ss_pred hhh
Confidence 443
No 167
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.61 E-value=28 Score=37.69 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001257 823 AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (1113)
Q Consensus 823 LEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ 882 (1113)
+-++.+.+.+....+-.+|..|+++...+...++..-.....|..+........|.|-..
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444433333333333333333
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.48 E-value=4.7 Score=43.33 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
.++.++..++.+++.++.+.+ +...++..++.+....+.+|.++.+.|.++-..+-.++..|+.+.+.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554433 22334444444444445555555555555444444444444444333
No 169
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.37 E-value=14 Score=41.43 Aligned_cols=84 Identities=7% Similarity=0.183 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
.++..|+.+..++..++..+..+...-..|..|++.-+.++.-.++.++.|...|=...++...|-.++.+....|+..=
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kf 245 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777777777766777777788888888888888888888888888888888888888777666544
Q ss_pred HHHH
Q 001257 881 DDTK 884 (1113)
Q Consensus 881 R~ir 884 (1113)
|++.
T Consensus 246 RNl~ 249 (267)
T PF10234_consen 246 RNLD 249 (267)
T ss_pred HhHH
Confidence 4443
No 170
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.35 E-value=2.7 Score=39.71 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAA 826 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEek 826 (1113)
.+..+.+.+..+++.++.+.+.+..+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444445555555544443333
No 171
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=90.11 E-value=0.14 Score=61.47 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES-EKLKRLLGQFKAADEIRQEAYKHW-QSLKKQAYDKNQ 874 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIk-aEIdELQEELkALdEkRDEAYEeL-keLRKERDEkNk 874 (1113)
....++..|+.++..|...|+.+.+.+...-.....+. ..|..+..+++-|.+.|.+....+ ..+|.+..+.++
T Consensus 225 ~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd 300 (619)
T PF03999_consen 225 EREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWD 300 (619)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33455666677777777766666555553322222211 334445555555544443333322 333444444333
No 172
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.97 E-value=80 Score=41.83 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHhhc
Q 001257 740 SVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQT 757 (1113)
...+..+++..++.+++.
T Consensus 145 ~~~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 145 QQTEARRQLNEIERRLQT 162 (1109)
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 337778888888888777
No 173
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=89.69 E-value=0.77 Score=57.02 Aligned_cols=44 Identities=34% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 001257 1067 RLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKVRRLK 1110 (1113)
Q Consensus 1067 r~ee~~Kak~a~eRKkk~aeK~a~~A~~ra~KEAEkKeKErEKK 1110 (1113)
|++|-+-++++++|++++.+-++++-+.+++||+|+..++|-|.
T Consensus 235 reeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~Ka 278 (1064)
T KOG1144|consen 235 REEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKA 278 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333335556666666666666665666777777666655543
No 174
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.56 E-value=5.5 Score=40.55 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQA 829 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKA 829 (1113)
.+..+|..|+.++..++..++.++.++..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333
No 175
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=89.55 E-value=29 Score=39.71 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 763 KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (1113)
Q Consensus 763 vEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEId 842 (1113)
.-||||.+|++.-++.|..- .-.-..++ ..+.+.+-...|...|+.+..|..++.-.-..++.+.++|+.++++
T Consensus 92 aWEKKLY~EVKa~E~~r~~y---eKK~~~Lr-~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDe-- 165 (312)
T PF04782_consen 92 AWEKKLYDEVKAEEKLRIEY---EKKCKQLR-KQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDE-- 165 (312)
T ss_pred HHHHHHHHHHHccHHHHHHH---HHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 57999999999888887541 11111111 1122222223444555555555555555554455555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhC
Q 001257 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY----KDDTKQANDLASK---GDREALQHLCVNQVERVLELWNN 915 (1113)
Q Consensus 843 ELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqn----RR~irKARELAak---gdveELeelC~~EVEkFMelWNn 915 (1113)
++|-.|.+|-.=+-.|++.+|+. ...+..++-|... .-..+.......|.|.-+..|+.
T Consensus 166 --------------EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~ 231 (312)
T PF04782_consen 166 --------------ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHS 231 (312)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766654 3345556644322 24456666677777777777776
Q ss_pred Ch----HHHHHHHHhhhhhHhhhhhcc
Q 001257 916 ND----EFRKEYVNSNIRSTLRRLKTL 938 (1113)
Q Consensus 916 Dk----eFRkDYeKrnl~Sl~rRqlT~ 938 (1113)
.. ..=++|++. |..-+++-+..
T Consensus 232 sF~~~i~~Qk~YV~a-Ln~WL~~~l~~ 257 (312)
T PF04782_consen 232 SFCKWIKAQKSYVKA-LNGWLKLCLMQ 257 (312)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 54 456788885 45556665543
No 176
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.30 E-value=6.1 Score=39.53 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA----------SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA----------ERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~K 734 (1113)
+.-++..++.++..+...|+.++++|-.+.. +...|..+++.|..++..+...+.+|-.+++.|+..+..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4455666666666677777777777666533 333445555555555555555666666666666655544
Q ss_pred cc
Q 001257 735 MK 736 (1113)
Q Consensus 735 LR 736 (1113)
++
T Consensus 108 lK 109 (120)
T PF12325_consen 108 LK 109 (120)
T ss_pred HH
Confidence 43
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.02 E-value=8.2 Score=46.02 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
...+....+..+.++++...+.+++..+.+..++.+++.++..++++++.+.+.-..+.+....++..+.+++...-..+
T Consensus 351 n~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 351 NQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33345556677788888888888888888889999999999999999999998888888888888888888776333222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHH
Q 001257 881 DDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFR 920 (1113)
Q Consensus 881 R~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFR 920 (1113)
. +++. .+.+|+ .|+--.|-..-+...|-
T Consensus 431 ~----s~d~----~I~dLq----EQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 431 G----SKDE----KITDLQ----EQLRDLMFFLEAQQKLK 458 (493)
T ss_pred H----HHHH----HHHHHH----HHHHhHheehhhhhhhh
Confidence 2 2222 355555 56777777766655543
No 178
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=89.01 E-value=33 Score=44.86 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 001257 832 KLHREESEKLKRLLGQFKAADEIRQEA------------YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ 899 (1113)
Q Consensus 832 KK~DEIkaEIdELQEELkALdEkRDEA------------YEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELe 899 (1113)
+.+.+++..+..+.+.+..+.-.|++. +..+.+|+.++...|.+.... .++..|...
T Consensus 1197 KnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~--LIn~iR~sl--------- 1265 (1439)
T PF12252_consen 1197 KNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKA--LINTIRVSL--------- 1265 (1439)
T ss_pred CchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHH--HHHHHHHHH---------
Confidence 344456666666666666666666655 456778888888877755532 233333332
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccC
Q 001257 900 HLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLD 939 (1113)
Q Consensus 900 elC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~D 939 (1113)
+|++ ++...--+.|.+.|+.-|..=.-|+|
T Consensus 1266 ----nqme------~~tf~~q~~eiq~n~~ll~~L~~tlD 1295 (1439)
T PF12252_consen 1266 ----NQME------VKTFEEQEKEIQQNLQLLDKLEKTLD 1295 (1439)
T ss_pred ----HHhh------hhhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 2222 22223346788888888877777777
No 179
>PF13514 AAA_27: AAA domain
Probab=88.73 E-value=90 Score=40.76 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.5
Q ss_pred cCCCCCCCCc
Q 001257 942 SLGPDEEAPL 951 (1113)
Q Consensus 942 ~lnPDEkPpv 951 (1113)
+.++|..+|+
T Consensus 1001 ~~d~d~~~~~ 1010 (1111)
T PF13514_consen 1001 RVDEDGDKPV 1010 (1111)
T ss_pred eeccccCccc
Confidence 4566665544
No 180
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.38 E-value=26 Score=37.97 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001257 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ- 874 (1113)
Q Consensus 796 idQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk- 874 (1113)
.+++..+..++..+.++++.++.. .+.+.+.++..+.++.+|+.++..+...+.+..--+...-+.+...-.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~-------~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~ 120 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVY-------NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVEL 120 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555555 444444555555666666666666666666555544444444433222
Q ss_pred ----HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 001257 875 ----HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1113)
Q Consensus 875 ----eFYqnRR~irKARELAakgdveELeelC~~EVEkFMelW 913 (1113)
..-+.+.-+..-+.+....++.- .|+|..+|
T Consensus 121 d~Pf~~~eR~~Rl~~L~~~l~~~dv~~--------~ek~r~vl 155 (251)
T PF11932_consen 121 DLPFLLEERQERLARLRAMLDDADVSL--------AEKFRRVL 155 (251)
T ss_pred CCCCChHHHHHHHHHHHHhhhccCCCH--------HHHHHHHH
Confidence 11122333345556665666433 35555555
No 181
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=88.32 E-value=2.7 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 1090 TRAALRAQKEAEQKEKVRR 1108 (1113)
Q Consensus 1090 ~~A~~ra~KEAEkKeKErE 1108 (1113)
++.+.+.+|+.+++.++.+
T Consensus 154 ~k~eek~~keeekr~~eE~ 172 (216)
T PF11600_consen 154 AKEEEKRKKEEEKRKKEEE 172 (216)
T ss_pred hHHHHHHHHHHHHHhhHHH
Confidence 4445555566655555443
No 182
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.85 E-value=7.4 Score=39.66 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=9.6
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 001257 759 TLPLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 759 SLSLvEEKKLLKEIKQLKKq 778 (1113)
+++..+-..+=.+|.+|+..
T Consensus 68 ~~s~eel~~ld~ei~~L~~e 87 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREE 87 (169)
T ss_pred CCCchhHHHHHHHHHHHHHH
Confidence 34444444444455555444
No 183
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.84 E-value=39 Score=35.50 Aligned_cols=101 Identities=20% Similarity=0.348 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------------HHHH
Q 001257 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQ--------------SLKK 867 (1113)
Q Consensus 803 qEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd-EkRDEAYEeLk--------------eLRK 867 (1113)
..+...+++||.+++.++...-+..+.+..+.-..+..+.+....+.... +.+.+||++.. .||.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~ 105 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRE 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666655555555555555555555555555444444333 33455555544 4555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCC
Q 001257 868 QAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNN 916 (1113)
Q Consensus 868 ERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnD 916 (1113)
.||..-...-+....+.+|..|+ +||-=.|++..+|
T Consensus 106 rRD~LErrl~~l~~tierAE~l~-------------sqi~vvl~yL~~d 141 (159)
T PF05384_consen 106 RRDELERRLRNLEETIERAENLV-------------SQIGVVLNYLSGD 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhh
Confidence 55555555555555556666663 5555555555444
No 184
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.78 E-value=32 Score=35.31 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
.++..+.++++.+...+......+..+...+............+++.++......+..+..|+
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444
No 185
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.45 E-value=48 Score=36.18 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
+|+-|..++.+....-+.-..+|-.+|....+++.++.....+...++..+..|--++......|...
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 46666666555555555555556666777777777777776677777777777777776666555443
No 186
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.38 E-value=9.8 Score=39.82 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 688 DDIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 688 aELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
.++..+...|.++..+|..+..+...++.
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccchhhh
Confidence 33333344444444444444333333333
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.38 E-value=22 Score=36.40 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 672 LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+..++.+.++....+..++..+...-.++...+..++......+..+......+
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 132 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERL 132 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444455555555555555555555444444443333333333
No 188
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.37 E-value=11 Score=39.80 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAY 859 (1113)
.+..|...++.++..+..+.+.|.+++..+..++..+++.+.++...++.|-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554455555555555555555666666666666666665553
No 189
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.35 E-value=1.1e+02 Score=40.05 Aligned_cols=7 Identities=43% Similarity=0.938 Sum_probs=3.8
Q ss_pred hCChHHH
Q 001257 914 NNNDEFR 920 (1113)
Q Consensus 914 NnDkeFR 920 (1113)
++.+.||
T Consensus 889 ~~g~kf~ 895 (1047)
T PRK10246 889 KEGDKFR 895 (1047)
T ss_pred ccCchHH
Confidence 3445666
No 190
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.20 E-value=3.3 Score=39.15 Aligned_cols=63 Identities=13% Similarity=0.253 Sum_probs=50.5
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKA-------AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 663 EeLKAKIde-------LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+.|.+||.+ |+-+|++++.+-..+..+++.+++.|.+|..+...|++++..|...+...+-.|
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666554 567889999999999999999999999999999999999999887655554433
No 191
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.16 E-value=39 Score=39.31 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEA 858 (1113)
|..++..+..++..++.++.....+.+.++.-+.+...+++.|.+++..++.++++.
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555555555555555555555566666666666665555544
No 192
>PLN03188 kinesin-12 family protein; Provisional
Probab=87.09 E-value=1.3e+02 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
....--+++...+-.+-.++|..|.+|++.++.
T Consensus 1211 ea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~ 1243 (1320)
T PLN03188 1211 EALTVAQKRAMDAEQEAAEAYKQIDKLKRKHEN 1243 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666777788999999999988744
No 193
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.02 E-value=99 Score=39.30 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 694 RAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
.++=..|..+|.+|..+.++.|..+.....|.+-|......++
T Consensus 26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~ 68 (717)
T PF09730_consen 26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELR 68 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777766666666666665554444
No 194
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.89 E-value=90 Score=38.73 Aligned_cols=181 Identities=12% Similarity=0.165 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA---ISVD 742 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNA---KSVE 742 (1113)
....+.++.+|..+...-.+...+.-....==-++.++--.|..++..+...++.-+.||+.+++++++.+.. ....
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555556655555544433322111111112233334455555666666666777788888877766520 0111
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHH----HHHHHHHHHH
Q 001257 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKF----LRKEADSLRE 818 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKa----LKKELDELRk 818 (1113)
.+. +=|..++- |-..|--++..|-.|+...++.+.-.. ..++..+........++. +-.+.-.+|.
T Consensus 87 g~e----~EesLLqE---SaakE~~yl~kI~eleneLKq~r~el~---~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~ 156 (772)
T KOG0999|consen 87 GEE----REESLLQE---SAAKEEYYLQKILELENELKQLRQELT---NVQEENERLEKVHSDLKESNAAVEDQRRRLRD 156 (772)
T ss_pred chh----hHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 111 11111221 234455566666666555554322111 111111111111111111 1112222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQ 856 (1113)
Q Consensus 819 KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRD 856 (1113)
+|+.++-.-.-+-..|.++..+--.||+..-.|..-.-
T Consensus 157 elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQV 194 (772)
T KOG0999|consen 157 ELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQV 194 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhh
Confidence 33333322233445677777777778887777665443
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.74 E-value=9.8 Score=39.82 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
..|..|..++..++.++..++..+++..+-++.+++++..|+-++..+. +++..|.++...+-.-|-
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e-------~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLE-------EKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666555555555555555544443 334444444444444443
No 196
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.70 E-value=1.1e+02 Score=39.62 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 686 InaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
+-+.+...|.....|..++.++.-++.+.+-..++-+.+-..|+..+
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el 395 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNEL 395 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344555555556666665555444444444444444444433
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.66 E-value=36 Score=40.94 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 710 DERSARESLKSKRQEIDSVQSR 731 (1113)
Q Consensus 710 E~KqlReel~EKIKEIdsLQsa 731 (1113)
|++..+..+..++.+.++|...
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~ 369 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQE 369 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhh
Confidence 5555555556666666655543
No 198
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.59 E-value=1.2e+02 Score=39.89 Aligned_cols=35 Identities=9% Similarity=0.305 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAE 696 (1113)
.+-++.+..+|...-.-+-....-+.++|+.+|++
T Consensus 259 s~fykdRveelkedN~vLleekeMLeeQLq~lrar 293 (1195)
T KOG4643|consen 259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRAR 293 (1195)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 33355555555555444444444555555555543
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.36 E-value=0.22 Score=60.77 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLR 708 (1113)
.+++++..++.++.++...|+.+..++..+..+-.+|+.+...|.
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777766666666555555544444444444444443
No 200
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=85.79 E-value=70 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.625 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 766 KQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViA 784 (1113)
+.+|.++..|+..|..++.
T Consensus 194 r~ll~kl~~lk~eR~~l~~ 212 (337)
T cd09234 194 KRILNKVNEMRKQRRSLEQ 212 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6688888888888887644
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.57 E-value=13 Score=34.29 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+.|..||..|-.-|..++..-..+..+-..+..++..|..+...|+.++.++..-+...+..|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667776666666666666666666666666677777777777666666665555444444
No 202
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=85.56 E-value=72 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 766 KQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViA 784 (1113)
+.+|.++..|++.|..+..
T Consensus 194 r~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 194 RQLMEQVETIKAEREVIES 212 (339)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888899999999887533
No 203
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=85.53 E-value=56 Score=35.03 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 001257 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (1113)
Q Consensus 813 LDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd-EkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAa 891 (1113)
+..+.+........+...+++|+..-.++..+..+.+.+. ...+++-.++.............|..+...++..
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~----- 183 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL----- 183 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3344444444444455555666655555555544432221 2234444444444444444444444444433333
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHh
Q 001257 892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL 932 (1113)
Q Consensus 892 kgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~ 932 (1113)
...+..+|-.++..+-.-.+.|-.+.|.++|+..
T Consensus 184 -------~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 184 -------NEIWNREWKAALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777778889999998887754
No 204
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.38 E-value=3.9 Score=38.61 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA---ERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+..+...+..+++.++..|+.+..++..++. .+.+|..+.+.++.+.+.+...+.....++
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554433 345555555555555444444443333333
No 205
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.02 E-value=1.2e+02 Score=38.34 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 842 dELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
..|.+-+..+.+.+.+-..+++.|+.+.-+++.
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn 261 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN 261 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666667777777776666544
No 206
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=85.02 E-value=60 Score=34.93 Aligned_cols=153 Identities=11% Similarity=0.202 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAA-TQAVKKLHREESEKLKRL 844 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEek-lKALkKK~DEIkaEIdEL 844 (1113)
|++.+.+..|-+.|+.+....+.++..-..++.-+. ...+...-..+-.+-.++..+... ...-.-.+-+.=.++-.+
T Consensus 29 k~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~-~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~ 107 (224)
T cd07623 29 RKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE-HTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGL 107 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888776666655544333332221 011222222222232333332211 222222233333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHH
Q 001257 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQH------------FWKYKDDTKQAND--LASKGDREALQHLCVNQVERVL 910 (1113)
Q Consensus 845 QEELkALdEkRDEAYEeLkeLRKERDEkNke------------FYqnRR~irKARE--LAakgdveELeelC~~EVEkFM 910 (1113)
....+.+-..|.++|..|+.+...+.++... +.+....+..+.. -.++.+...+-..+..|+.+|-
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~ 187 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFE 187 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777888887777766655554443 3333444433332 2335578888999999999997
Q ss_pred HHHhCChHHHH
Q 001257 911 ELWNNNDEFRK 921 (1113)
Q Consensus 911 elWNnDkeFRk 921 (1113)
..+. ..||.
T Consensus 188 ~erv--~dfk~ 196 (224)
T cd07623 188 KNRV--KDFKD 196 (224)
T ss_pred HHHH--HHHHH
Confidence 6553 34544
No 207
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=84.95 E-value=77 Score=36.17 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001257 766 KQIIREIKQLKQRREQIS 783 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkVi 783 (1113)
+.+|.++..|+..|..+.
T Consensus 198 r~~l~~l~~lk~eR~~l~ 215 (339)
T cd09238 198 RSNLEELEALGNERAGIE 215 (339)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 448888888888887643
No 208
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.84 E-value=35 Score=42.62 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
.+......++++++.+..++.++.+++.+++..+..++.+
T Consensus 231 ~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~ 270 (670)
T KOG0239|consen 231 PLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTRE 270 (670)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444443333444444334333
No 209
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.81 E-value=12 Score=41.04 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQ 845 (1113)
+++++++.+|++.-..-.. +..|.+.+.+++..+++++++..++++....+..+|.
T Consensus 130 ~~~~~~~~~lk~~~~~~~~------------------------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK------------------------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred HHHHHHHHHHHHhhhcccc------------------------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777543111 2222333333333333334444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 846 GQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 846 EELkALdEkRDEAYEeLkeLRKERD 870 (1113)
++.+.+..+-|.+.++-..||++..
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555543
No 210
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=84.80 E-value=1e+02 Score=37.45 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=4.4
Q ss_pred cCCHHHHH
Q 001257 892 KGDREALQ 899 (1113)
Q Consensus 892 kgdveELe 899 (1113)
+|+..|++
T Consensus 202 rG~WGE~q 209 (475)
T PRK10361 202 QGNWGEVV 209 (475)
T ss_pred CcchHHHH
Confidence 45555654
No 211
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.49 E-value=85 Score=36.25 Aligned_cols=196 Identities=19% Similarity=0.283 Sum_probs=100.7
Q ss_pred ChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--
Q 001257 661 DDENLREQIKAAQSKVD----EKTRSRDAIRDDIQTIRASYKEYAEKLEA-------AISDERSARESLKSKRQEIDS-- 727 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIe----ELKQkRdAInaELkakRAERdELiEQLKe-------LReE~KqlReel~EKIKEIds-- 727 (1113)
|.+.++.+.+.|++.|+ .+++.....+.++..++++-.-|.++|.. |-.+..+|+..+..-+.+.+.
T Consensus 32 diei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq 111 (305)
T PF14915_consen 32 DIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQ 111 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45567777777777654 34444555566666666555555555522 222333444444444443332
Q ss_pred -------------------HHHHH----hhccc-----CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHH-----HHHHH
Q 001257 728 -------------------VQSRI----NMMKN-----AISVDDIDGSIRNMEHRIAHETLPLKEEKQII-----REIKQ 774 (1113)
Q Consensus 728 -------------------LQsaL----~KLRN-----AKSVEEIDarIkrLE~RIQTgSLSLvEEKKLL-----KEIKQ 774 (1113)
|+..+ ..++. ..-...-+.++..|+..+.+..-.|.| |-++ ++.+|
T Consensus 112 ~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrE-KtL~lE~~QrdL~Q 190 (305)
T PF14915_consen 112 TSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALRE-KTLALESVQRDLSQ 190 (305)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 22111 11110 012233345577777777777666653 3332 22333
Q ss_pred HHHHHHHhhh-cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 775 LKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADE 853 (1113)
Q Consensus 775 LKKqRKkViA-naa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdE 853 (1113)
-..+.+.+.. |-..++++...++..+.++++|-.|..|--=||.+|+++..+...-.+-+-.+...+..+...+++=.+
T Consensus 191 tq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~e 270 (305)
T PF14915_consen 191 TQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESE 270 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333332222 334567777788888888888777666655666666666544444344455555555555555555444
Q ss_pred HHHH
Q 001257 854 IRQE 857 (1113)
Q Consensus 854 kRDE 857 (1113)
++.=
T Consensus 271 kq~l 274 (305)
T PF14915_consen 271 KQVL 274 (305)
T ss_pred HHHH
Confidence 4333
No 212
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=84.47 E-value=3.5 Score=46.35 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=12.1
Q ss_pred HHHHHhhhHHHHHHHH--HHHHHHHHHHHHHH
Q 001257 1048 RKAEEKRKEEATAKLR--EQRRLEEKAKAQEA 1077 (1113)
Q Consensus 1048 ~k~~~~~~e~~~ak~k--E~kr~ee~~Kak~a 1077 (1113)
+|+...|.++.++-.| ++.|+|+.+.+|++
T Consensus 258 ~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e 289 (321)
T PF07946_consen 258 KKAKKNREEEEEKILKEAHQERQEEAQEKKEE 289 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333 33444444333333
No 213
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=84.30 E-value=0.31 Score=61.01 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCChHH---H--HHHHHHHHHHHHHHHH
Q 001257 745 DGSIRNMEHRIAHETLPLKE---E--KQIIREIKQLKQRREQ 781 (1113)
Q Consensus 745 DarIkrLE~RIQTgSLSLvE---E--KKLLKEIKQLKKqRKk 781 (1113)
...|..+-.++.+..+...+ | |++.++|..|......
T Consensus 298 ~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 298 NAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554222 2 5777777777766554
No 214
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.20 E-value=64 Score=34.64 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTR 681 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQ 681 (1113)
.|...|..++..++.+..
T Consensus 16 ~L~n~l~elq~~l~~l~~ 33 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRK 33 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666665555544
No 215
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.98 E-value=18 Score=38.33 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 815 ELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
.++..+..+.+.+..+.+++.++..+|...... +.-...|.+..+++..|+++...+.+.+-.|+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443344444444444444555555555322 23347788888888888888888777665443
No 216
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.87 E-value=52 Score=35.68 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 001257 810 RKEADSLREN 819 (1113)
Q Consensus 810 KKELDELRkK 819 (1113)
..+...+..+
T Consensus 48 ~~e~~~L~~e 57 (251)
T PF11932_consen 48 DDEKQELLAE 57 (251)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 217
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.84 E-value=24 Score=39.02 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhcccc
Q 001257 771 EIKQLKQRREQISSSIGE 788 (1113)
Q Consensus 771 EIKQLKKqRKkViAnaa~ 788 (1113)
||+.|+++-+-+.+++..
T Consensus 44 e~~eLk~qnkli~K~l~e 61 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSE 61 (230)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 889999988766555443
No 218
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.63 E-value=81 Score=35.59 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL----RKEADSLRENVIKAEAATQAVKKLHREESEKL 841 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaL----KKELDELRkKLkkLEeklKALkKK~DEIkaEI 841 (1113)
+.++++|...+.+ .-.++...+.+.+.+..-+..| .+.+...+.+|...+++.. .++
T Consensus 23 ~~L~~~IqdtE~s---------t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e----------~~l 83 (258)
T PF15397_consen 23 KELIKEIQDTEDS---------TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEE----------SKL 83 (258)
T ss_pred HHHHHHHHhHHhh---------HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH----------hHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 001257 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ----HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1113)
Q Consensus 842 dELQEELkALdEkRDEAYEeLkeLRKERDEkNk----eFYqnRR~irKARELAakgdveELeelC~~EVEkFMelW 913 (1113)
..|+.++..++++..++.+++.-|+-=.|.-.- ..++-.+.+..+++.. +-+..+|.+.|..+...|-..|
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~q-qdEldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQ-QDELDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 219
>PRK10698 phage shock protein PspA; Provisional
Probab=83.55 E-value=72 Score=34.68 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 794 LAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (1113)
Q Consensus 794 ESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd 852 (1113)
.++.++.....++..|..+++.....+..+...+..|..+|.+.+.+-..|....+.+.
T Consensus 89 ~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 89 AALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777777777777777666666666666666666666555555555444
No 220
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.54 E-value=68 Score=34.41 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRR 779 (1113)
Q Consensus 767 KLLKEIKQLKKqR 779 (1113)
++..|...|++..
T Consensus 66 ~a~~e~~eL~k~L 78 (201)
T PF13851_consen 66 KAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 221
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=83.46 E-value=7.7 Score=41.41 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=3.2
Q ss_pred HHHHHHHhh
Q 001257 1099 EAEQKEKVR 1107 (1113)
Q Consensus 1099 EAEkKeKEr 1107 (1113)
+.|+..|+.
T Consensus 156 ~eek~~kee 164 (216)
T PF11600_consen 156 EEEKRKKEE 164 (216)
T ss_pred HHHHHHHHH
Confidence 333333333
No 222
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.08 E-value=1.5e+02 Score=38.03 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 807 KaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
..|.......-.++..+...+..+.|....++=++..+++++.--+..|+=-......-++|+-+.-+..
T Consensus 123 ~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkki 192 (769)
T PF05911_consen 123 AELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKI 192 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444445555556666677777777777788888888888877777776666666666666554433
No 223
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.96 E-value=1.4e+02 Score=37.66 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------C----------CCHHHHHHHHHHHHHHhhcCC
Q 001257 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN----------A----------ISVDDIDGSIRNMEHRIAHET 759 (1113)
Q Consensus 700 LiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRN----------A----------KSVEEIDarIkrLE~RIQTgS 759 (1113)
|..++..|...+.++|...+++++|+..|...+.++.. + ...+++..+|..|+... +
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek---~ 177 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK---S 177 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH---H
Confidence 56777888888889999999999999888887766641 0 23455555555555433 3
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 001257 760 LPLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 760 LSLvEEKKLLKEIKQLKKq 778 (1113)
..|.+=-.++.+|..|-..
T Consensus 178 ~Rlekv~~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 178 DRLEKVLELKEEIKSLCSV 196 (660)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554
No 224
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.82 E-value=52 Score=36.28 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLk 863 (1113)
++|..+...++.+......+-.+..
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 225
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=82.25 E-value=0.42 Score=59.89 Aligned_cols=32 Identities=34% Similarity=0.384 Sum_probs=0.0
Q ss_pred cchhhhhcccccchhhhhccccccccCCcccc
Q 001257 92 SCADQENQLLNLSAKEAELGDQKFESGGAESG 123 (1113)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1113)
.++--+.+--.|+.--.+|.++-=++||+-..
T Consensus 61 ~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~a 92 (859)
T PF01576_consen 61 ARAKAEKQRRDLSEELEELKERLEEAGGATQA 92 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHh
Confidence 34444555556666666666666666666443
No 226
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.11 E-value=81 Score=34.25 Aligned_cols=47 Identities=6% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001257 874 QHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRK 921 (1113)
Q Consensus 874 keFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRk 921 (1113)
..+...+..+...+..- ...-..++.+...|+..+-.-.+--..=|.
T Consensus 175 ~~~~~l~~~le~~~~~~-~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~ 221 (247)
T PF06705_consen 175 SKLSELRSELEEVKRRR-EKGDEQFQNFVLEEIAALKNALALESQERE 221 (247)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444332 222234444444444444444433333343
No 227
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=1e+02 Score=35.32 Aligned_cols=103 Identities=8% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEE 743 (1113)
.++.-|+.+...++++.+.=..+.......++-|+.|...+..++..-+.++. |++.++.-.......+.+...
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~----kL~~~e~~~~~~~~~~~~~~~-- 117 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKT----KLKALEKENEADETQNRSSAG-- 117 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccccCCCCcc--
Confidence 45555555555444444433333333333345555555555555555444444 555555444443332211111
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 001257 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 744 IDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkV 782 (1113)
.++ ++.||++++ |++..-|...+..+...
T Consensus 118 --~r~----rrtq~~~~~----kkf~~~M~~f~~~~~~~ 146 (297)
T KOG0810|consen 118 --LRT----RRTQTSALS----KKLKELMNEFNRTQSKY 146 (297)
T ss_pred --chh----HHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 112 345666666 88888888888887653
No 228
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.92 E-value=87 Score=34.47 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQ 781 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKk 781 (1113)
+.+|.+|..|+.+.+.
T Consensus 88 r~al~~~~~le~~~~~ 103 (225)
T COG1842 88 REALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777643
No 229
>PRK10698 phage shock protein PspA; Provisional
Probab=81.91 E-value=19 Score=39.01 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHhhcC
Q 001257 740 SVDDIDGSIRNMEHRIAHE 758 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTg 758 (1113)
-.+.++.+|.+||.+.+..
T Consensus 167 ~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 167 RFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 4456888899999888874
No 230
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.87 E-value=1e+02 Score=37.04 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 001257 747 SIRNMEHRI 755 (1113)
Q Consensus 747 rIkrLE~RI 755 (1113)
+|..|+.+|
T Consensus 289 e~~~l~~Qi 297 (511)
T PF09787_consen 289 EIQLLERQI 297 (511)
T ss_pred HHHHHHHHH
Confidence 344444444
No 231
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=81.84 E-value=78 Score=33.87 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhh-------------------hcccchhHHHHHhhhHHHHH
Q 001257 743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS-------------------SSIGEHDEVQLAFDQKDQIE 803 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkVi-------------------Anaa~rAkIQESidQKEaIq 803 (1113)
+|-..+..|..+++.|.--+.+=..++++-..++...-+-. .+......+..........+
T Consensus 2 ~L~d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H 81 (251)
T cd07653 2 ELWDQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH 81 (251)
T ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001257 804 EKMKF-LRKEA-DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881 (1113)
Q Consensus 804 EQIKa-LKKEL-DELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR 881 (1113)
.++.. |..++ +.|..-+...+..++.+..-+..+...+..+..++......=..++......+..+..........+.
T Consensus 82 ~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~ 161 (251)
T cd07653 82 ELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKA 161 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCC
Q 001257 882 DTKQANDLASKG--DREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDG 940 (1113)
Q Consensus 882 ~irKARELAakg--dveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DG 940 (1113)
.+.|++....+. .....+.-|...|..+ -.+...|+..-++.++.++...++
T Consensus 162 ~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~-------N~~~~~~y~~~~p~~~~~~q~le~ 215 (251)
T cd07653 162 DVEKAKANANLKTQAAEEAKNEYAAQLQKF-------NKEQRQHYSTDLPQIFDKLQELDE 215 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHhH
No 232
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=81.80 E-value=63 Score=33.46 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAAT 827 (1113)
Q Consensus 767 KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEekl 827 (1113)
-+|..|..|.+.+++... .....+.-..+|.+|+|.|..+.-.++..+
T Consensus 10 ~LInrInelQQaKKk~~E-------------ELgEa~~l~eaL~~ELDsL~~EkvhLeeil 57 (134)
T PF15233_consen 10 DLINRINELQQAKKKSSE-------------ELGEAQALWEALQRELDSLNGEKVHLEEIL 57 (134)
T ss_pred HHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 378888888887766321 122333445577777777777644444333
No 233
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=81.63 E-value=88 Score=34.34 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 766 KQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViA 784 (1113)
..+|.++.++=++|+.+..
T Consensus 68 ~~iL~ete~~A~~~~~~ae 86 (237)
T cd07657 68 KEIMDSTDQLSKLIKQHAE 86 (237)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888776533
No 234
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.39 E-value=1.3e+02 Score=36.27 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLRe 709 (1113)
.+.|.++|.-|. ++-..+..++..++..|.-+.+.-..|+.
T Consensus 45 ~e~l~~rv~sls-------q~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 45 GESLGARVSSLS-------QRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHH-------hhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 445555555444 44445677777777777777666555543
No 235
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.34 E-value=1.1e+02 Score=35.34 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
+..+.|..|+..|+.+-..++.....|..+-..+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 3567778888777777666666655555544433
No 236
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.46 E-value=1.5e+02 Score=36.25 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1113)
Q Consensus 767 KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQE 846 (1113)
+.+.||++-.+.--+ -.+|..++.+++.=-+++..||.++...-.. -++-|+..-+.-..++-.||+
T Consensus 433 ry~~eiQqKnksvsq-------clEmdk~LskKeeeverLQ~lkgelEkat~S------ALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 433 RYMTEIQQKNKSVSQ-------CLEMDKTLSKKEEEVERLQQLKGELEKATTS------ALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHHHHhhhHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 466777776665433 2334445566654345666666666632211 112222222333355555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 847 QFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 847 ELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
+++...+ +-.+++++|+-.+.+
T Consensus 500 EfQk~ek---enl~ERqkLKs~leK 521 (527)
T PF15066_consen 500 EFQKHEK---ENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHH---hhHHHHHHHHHHHHH
Confidence 6554332 224455555554444
No 237
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=80.36 E-value=43 Score=41.05 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLke 864 (1113)
..+++++.|+++++...+.++.++ ++++.....++.++.++....++-|..|..
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~---~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAK---NDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 334455555554444443344433 233333444666666666666666666653
No 238
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.18 E-value=53 Score=39.30 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 685 AInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
.++.++..--.+...+++|+-.++++.+.+++.+..+-.+|+.||..+..+
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555666666666666666666666666554433
No 239
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=80.06 E-value=7.9 Score=48.59 Aligned_cols=39 Identities=38% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 1042 EEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALER 1080 (1113)
Q Consensus 1042 Eeee~~~k~~~~~~e~~~ak~kE~kr~ee~~Kak~a~eR 1080 (1113)
|++|+.|.+++..+.-++.+...+|-+||++|++++.+|
T Consensus 941 Eaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~ 979 (1259)
T KOG0163|consen 941 EAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEER 979 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 444544444443333334444445555556655554443
No 240
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.93 E-value=99 Score=36.38 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 712 RSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 712 KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
+..++.+.+...|++.|+....+|.
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~ 112 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLK 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445556666666666665544443
No 241
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.73 E-value=45 Score=39.82 Aligned_cols=128 Identities=15% Similarity=0.218 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKL-------KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEI-------dELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
+.+|.-.++++.+.+++++...+..+..|++....++++. .-+..+..-+...|-....++.+||++.-+...
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n 111 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFEN 111 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3344444455555555554444444444444444444332 223334444445555556666666666555332
Q ss_pred ---HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhh
Q 001257 875 ---HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRR 934 (1113)
Q Consensus 875 ---eFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rR 934 (1113)
..-.-|+.++-+..|+....--.|+.+.-.+|...|..-+. .-++..-++|..-+
T Consensus 112 ~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~~~~~-----d~~v~~~lpS~~~~ 169 (459)
T KOG0288|consen 112 AELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVPRTED-----DHFVEDTLPSRALF 169 (459)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCccccC-----chhhhcccchhhhh
Confidence 33344445555555554333333444444455555444333 23344444554433
No 242
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.67 E-value=1.5e+02 Score=35.80 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEHRIAHET---LPLKEEKQIIREIKQLKQRRE 780 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgS---LSLvEEKKLLKEIKQLKKqRK 780 (1113)
+..-|......+-..++... =++.-.-..+++|..|..+.+
T Consensus 280 ~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e 323 (446)
T KOG4438|consen 280 NLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIE 323 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555 455666666777777777755
No 243
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.66 E-value=37 Score=31.45 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
.+...|..+...+...|...+.+|+.|=..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445555555555555443
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.61 E-value=23 Score=43.84 Aligned_cols=95 Identities=9% Similarity=0.299 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcccC
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER---SARESLKSKRQEIDSVQSRINMMKNA 738 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~K---qlReel~EKIKEIdsLQsaL~KLRNA 738 (1113)
.-.+...|..+...++.+......|..++..++..-..|.++|..++.+.+ ..+..+..+..+|..|...|...+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~-- 494 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK-- 494 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 334455555555555555555555555555555555555555544443322 112223334444445554443332
Q ss_pred CCHHHHHHHHHHHH--HHhhcC
Q 001257 739 ISVDDIDGSIRNME--HRIAHE 758 (1113)
Q Consensus 739 KSVEEIDarIkrLE--~RIQTg 758 (1113)
+-+++|.+++.+|. |.|+++
T Consensus 495 ~~ve~L~~~l~~l~k~~~lE~s 516 (652)
T COG2433 495 KRVEELERKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 46677777777766 555554
No 245
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.58 E-value=16 Score=40.62 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHh
Q 001257 678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (1113)
Q Consensus 678 ELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RI 755 (1113)
.++..+..++.+++....+..+|+.++..+..++...+..+.....|.-.|...++++. .-+..|..+...|+-.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHhcccc
Confidence 44555666777777777777777777777777777777666666666655666555554 35667777777776554
No 246
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=79.48 E-value=31 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 001257 889 LASKGDREALQHLCVNQV 906 (1113)
Q Consensus 889 LAakgdveELeelC~~EV 906 (1113)
+.-.|+..+.+.+.....
T Consensus 193 v~I~G~~~~A~~~~~~~~ 210 (355)
T PF09766_consen 193 VEIVGDEEEAKAFERQQE 210 (355)
T ss_pred EEEEecHHHHHHHHhccc
Confidence 445688777776665543
No 247
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.31 E-value=28 Score=32.01 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQ 729 (1113)
.|++.+..|+..+..+..+-......++.++.+|+....+|..+..+...++..+....++++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777666666666666777778888888888888887777777777777777766544
No 248
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.28 E-value=19 Score=38.10 Aligned_cols=66 Identities=14% Similarity=0.307 Sum_probs=49.8
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR------ASYKEYAEKLEAAISDERSARESLK 719 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakR------AERdELiEQLKeLReE~KqlReel~ 719 (1113)
+-.+|.-....++.+++.|++++..++.....+..++...+ .+|..+..++..|..+.+.++..+.
T Consensus 56 YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 56 YWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred EEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777778999999999999999999999999998886 3566666666666655555555444
No 249
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.11 E-value=23 Score=40.41 Aligned_cols=99 Identities=12% Similarity=0.225 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD 743 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEE 743 (1113)
.|+..+.+++....+..-.-.+|.++...+.=+-+-|..+|..+.+.+-+++..+.+|+.+++-++..+..++ .-..+
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~--~e~~~ 158 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR--EELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 4455555555555554444444444444444444445555555555555555555667777766666665555 35566
Q ss_pred HHHHHHHHHHHhhcCCCChHH
Q 001257 744 IDGSIRNMEHRIAHETLPLKE 764 (1113)
Q Consensus 744 IDarIkrLE~RIQTgSLSLvE 764 (1113)
|...|...+..|+--.|-|..
T Consensus 159 Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 159 LREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHCCeeeCC
Confidence 666676666666554444443
No 250
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=78.90 E-value=1e+02 Score=35.40 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 001257 768 IIREIKQLKQRREQ 781 (1113)
Q Consensus 768 LLKEIKQLKKqRKk 781 (1113)
|=..|..|++.|..
T Consensus 55 i~~k~~e~r~~r~l 68 (338)
T KOG3647|consen 55 IGDKIEELRKAREL 68 (338)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566667776664
No 251
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.85 E-value=1e+02 Score=33.34 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQII 769 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLL 769 (1113)
.|.++|+.+|......++.-.-.|......|
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l 108 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQL 108 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888777766665444444433333
No 252
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.72 E-value=1.3e+02 Score=34.60 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 690 IQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 690 LkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
+.-+..+..++..+|.....++..|+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555544
No 253
>PRK11281 hypothetical protein; Provisional
Probab=78.67 E-value=2.4e+02 Score=37.65 Aligned_cols=20 Identities=0% Similarity=0.061 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 001257 740 SVDDIDGSIRNMEHRIAHET 759 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgS 759 (1113)
-..+...++..+..+++.+.
T Consensus 164 ~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 164 ALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 44677778888888887743
No 254
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.67 E-value=1.1e+02 Score=33.55 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREES 838 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIk 838 (1113)
.+++.-..|++.+..+.+.++....+|+.++
T Consensus 108 ~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 108 GYKKNEETLKKCIEEYEERLKKEEQRYQALK 138 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444444444444444444444444
No 255
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=78.56 E-value=1.8e+02 Score=37.55 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=29.6
Q ss_pred ecCCCCChHHHHHHHHHH-HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 655 VKVPRYDDENLREQIKAA-QSKVDEKTRSRDA-----------------IRDDIQTIRASYKEYAEKLEAAISDER 712 (1113)
Q Consensus 655 VKVPRPDDEeLKAKIdeL-qKEIeELKQkRdA-----------------InaELkakRAERdELiEQLKeLReE~K 712 (1113)
||.-+|-.-+|++-+... +-+|+.|...--+ |-=.++.+|.+-..|+.+|+.|-++++
T Consensus 336 Vrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 336 VRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 333444555666655533 3344444443222 223345566666666666666655443
No 256
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=78.52 E-value=76 Score=31.72 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCChHHHHHHHHhh
Q 001257 905 QVERVLELWNNNDEFRKEYVNSN 927 (1113)
Q Consensus 905 EVEkFMelWNnDkeFRkDYeKrn 927 (1113)
.|+.|+... .+-|+.|+.|-
T Consensus 125 d~~~Fl~~f---~~~R~~yH~R~ 144 (150)
T PF07200_consen 125 DVDDFLKQF---KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHH---HHHHHHHHHHH
Confidence 355555444 45677777754
No 257
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.37 E-value=20 Score=40.84 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=49.8
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001257 655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD-------ERSARESLKSKRQEIDS 727 (1113)
Q Consensus 655 VKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE-------~KqlReel~EKIKEIds 727 (1113)
||+|.| +.+-.=+.+-.--|..++.+..+-...|...-.+-.+|..||-..++. +=+.+-++++-++||++
T Consensus 51 ikPP~P--EQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQ 128 (305)
T PF15290_consen 51 IKPPNP--EQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQ 128 (305)
T ss_pred CCCCCH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 333333333344444444444444444444445556666666555442 23455567778888888
Q ss_pred HHHHHhhcccCCCHHHHHHHHHH
Q 001257 728 VQSRINMMKNAISVDDIDGSIRN 750 (1113)
Q Consensus 728 LQsaL~KLRNAKSVEEIDarIkr 750 (1113)
|++.+.-+|+ |..+-|+-|+.
T Consensus 129 LkQvieTmrs--sL~ekDkGiQK 149 (305)
T PF15290_consen 129 LKQVIETMRS--SLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHh--hhchhhhhHHH
Confidence 8888777763 44454554443
No 258
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.35 E-value=32 Score=37.86 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001257 830 VKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA 890 (1113)
Q Consensus 830 LkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELA 890 (1113)
+..+.+..++++..|.++++.....-+.+-++-.+|++|.+..+..|.+.-....+-++-.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4445566667777777777777777778888888889999998888887766655555443
No 259
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=78.19 E-value=11 Score=44.36 Aligned_cols=12 Identities=17% Similarity=0.027 Sum_probs=5.0
Q ss_pred HHHhhhhhHhhh
Q 001257 923 YVNSNIRSTLRR 934 (1113)
Q Consensus 923 YeKrnl~Sl~rR 934 (1113)
|.+.++.|+.--
T Consensus 11 ~~~aiiiSv~LH 22 (387)
T PRK09510 11 LKRAIIISVVLH 22 (387)
T ss_pred chhHHHHHHHHH
Confidence 334444444333
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=78.14 E-value=42 Score=37.87 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
.+..+|+-.+.|++-.++.+..+....=+.. +++..|..+++.+++.=-..|.++.-|..+++..|.
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfm-------dEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFM-------DEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666677777766666555554444444 666777777888888888899999999999888665
No 261
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=78.13 E-value=1.1e+02 Score=33.55 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 803 qEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
..++..|-.++..+.+.++.+...-..+..+.+....+|..+..+++++.-.=.-+-....+|-+++|.+-...+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 345666666777777777777766666666666666666666666665554433334444555555555444433
No 262
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.81 E-value=90 Score=35.83 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
++..|+.|...|...++.++...+.|.-.+.--...+.-|..++...+......-.++..++.++.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444333333344444445555554444444444444444443
No 263
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.10 E-value=17 Score=42.62 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 001257 769 IREIKQLKQRRE 780 (1113)
Q Consensus 769 LKEIKQLKKqRK 780 (1113)
|.+|-.|.+.|+
T Consensus 27 vd~i~~ld~~~r 38 (425)
T PRK05431 27 VDELLELDEERR 38 (425)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 264
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.08 E-value=27 Score=38.91 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=8.7
Q ss_pred HHHHHHHHHHh
Q 001257 904 NQVERVLELWN 914 (1113)
Q Consensus 904 ~EVEkFMelWN 914 (1113)
.+-+.||-+|.
T Consensus 210 ~e~~~i~dl~~ 220 (290)
T COG4026 210 PEEELISDLVK 220 (290)
T ss_pred hHHHHHHHHHH
Confidence 56678999995
No 265
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=76.99 E-value=10 Score=46.95 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=9.7
Q ss_pred hccCCCcCCCCCCCC
Q 001257 936 KTLDGRSLGPDEEAP 950 (1113)
Q Consensus 936 lT~DGR~lnPDEkPp 950 (1113)
..-||-.++|+++-.
T Consensus 134 e~~d~p~~~~~~eq~ 148 (811)
T KOG4364|consen 134 ENVDAPVLEDDSEQC 148 (811)
T ss_pred cccCCcccCchhhhh
Confidence 445777777777644
No 266
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.95 E-value=1.4e+02 Score=34.06 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 807 KaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
+.++..+..+..++...++.+.++..++.++.++|..|+.+
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333433334333333333333333333
No 267
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.88 E-value=25 Score=38.06 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA----ERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
+..++..+++++.+++++.+.+....+...+ +-.....++..|.++.++++..+....++++.|...+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444444433332211 1111222233344444455554444444444444433
No 268
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.83 E-value=96 Score=38.14 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001257 693 IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772 (1113)
Q Consensus 693 kRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEI 772 (1113)
.+..-..|..+|+.+..+.-++|....-.+-|- |-.=+|.+++-.|=+.+++-+=.+|
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et----------------------~~~~~keq~~y~~~~KelrdtN~q~ 214 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLKTET----------------------LTYEEKEQQLYGDCVKELRDTNTQA 214 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh----------------------cchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 773 KQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (1113)
Q Consensus 773 KQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd 852 (1113)
..+.+.... .-.+..-.....-.+..+|..+++++..++=+...+.+-+.+.++.-+++.+++.+++++.-+.-
T Consensus 215 ~s~~eel~~------kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 215 RSGQEELQS------KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 001257 853 EIRQEAYKHWQSLK 866 (1113)
Q Consensus 853 EkRDEAYEeLkeLR 866 (1113)
+.--++-++|+.||
T Consensus 289 ~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 289 QMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHhhc
No 269
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=76.23 E-value=1.1e+02 Score=32.42 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 819 KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
++.+++.++......|+.++.. |..++-.+.+.+...+..+-
T Consensus 150 kl~kae~~l~~a~~~y~~lN~~---Lk~eLP~l~~~~~~~~~~~~ 191 (216)
T cd07599 150 QLAKLERKLEEAKEEYEALNEL---LKSELPKLLALADEFLPPLF 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Confidence 3455566677777777777766 77788888888888887775
No 270
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=2.4e+02 Score=36.00 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhhHhhhhhccC
Q 001257 919 FRKEYVNSNIRSTLRRLKTLD 939 (1113)
Q Consensus 919 FRkDYeKrnl~Sl~rRqlT~D 939 (1113)
+|-+=+=-+++-..+|+...+
T Consensus 604 ~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 604 KRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 444444444555666665554
No 271
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.44 E-value=1.7e+02 Score=34.09 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
.+...|..|+.|+.-||.++-....+..+ +...+-.+...+..+..-+..+-..-.+..-+|...+.+
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~---k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQEHSE---KMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888887766533332 222222333334444444443333344444444444433
No 272
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=75.42 E-value=15 Score=47.82 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.2
Q ss_pred ccccccccc
Q 001257 636 ASESRNIGV 644 (1113)
Q Consensus 636 A~d~~~~~~ 644 (1113)
++|-|-.+.
T Consensus 223 KSDVWSLG~ 231 (1021)
T PTZ00266 223 KSDMWALGC 231 (1021)
T ss_pred hhHHHHHHH
Confidence 345555443
No 273
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.33 E-value=16 Score=34.38 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=45.5
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKA-------AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720 (1113)
Q Consensus 663 EeLKAKIde-------LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~E 720 (1113)
+.|.+||.+ |+-+|++++.+.+.+..+.+.++..|..|..+-..|+++...|+..+..
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666554 4668889999999999999999999999988888888888888764433
No 274
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.29 E-value=30 Score=31.80 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~ 711 (1113)
...|..||+.|-...++++..-..++.++..+.++|..|++++...+.+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999988888899999999999998888877765543
No 275
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=75.01 E-value=13 Score=48.14 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=3.3
Q ss_pred hHHHHhh
Q 001257 507 VCKEVLE 513 (1113)
Q Consensus 507 ~~~~~~~ 513 (1113)
.|.++|.
T Consensus 123 Ia~QIL~ 129 (1021)
T PTZ00266 123 ITRQLLH 129 (1021)
T ss_pred HHHHHHH
Confidence 3445544
No 276
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=74.71 E-value=23 Score=41.51 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 001257 769 IREIKQLKQRREQ 781 (1113)
Q Consensus 769 LKEIKQLKKqRKk 781 (1113)
|.+|-.|.+.|.+
T Consensus 29 vd~i~~ld~~~r~ 41 (418)
T TIGR00414 29 LEKLIALDDERKK 41 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544443
No 277
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=74.64 E-value=1.4e+02 Score=32.91 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVI 821 (1113)
Q Consensus 742 EEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLk 821 (1113)
+++..-|..||.++ |++.+-+..|-+.|+.+....+.++..-..++.- +....+...-..+-++..++.
T Consensus 25 ~~~k~yi~~Le~~L----------k~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~-E~~~~ls~~l~~laev~~ki~ 93 (234)
T cd07664 25 EEKQQQFENLDQQL----------RKLHASVESLVCHRKELSANTAAFAKSAAMLGNS-EDHTALSRALSQLAEVEEKID 93 (234)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHH
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHH
Q 001257 822 K-AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD--------------DTKQA 886 (1113)
Q Consensus 822 k-LEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR--------------~irKA 886 (1113)
. +..+.....-.+.+.=.++-.+....+.+-..|.++|..|..+...+.++....-..+. ...+.
T Consensus 94 ~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~ 173 (234)
T cd07664 94 QLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEA 173 (234)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Q 001257 887 NDLASKGDREALQHLCVNQVERV 909 (1113)
Q Consensus 887 RELAakgdveELeelC~~EVEkF 909 (1113)
+--.+..+.+.+-.....|+++|
T Consensus 174 ~~~~a~~~fe~Is~~~k~El~rF 196 (234)
T cd07664 174 KVQQGERDFEQISKTIRKEVGRF 196 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 278
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.56 E-value=2.3e+02 Score=35.26 Aligned_cols=73 Identities=12% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHHh
Q 001257 683 RDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NAISVDDIDGSIRNMEHRI 755 (1113)
Q Consensus 683 RdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR--NAKSVEEIDarIkrLE~RI 755 (1113)
-+.|...|..+-..-..+..-++.|..+.+..+..+..-+.-+..|+..+-.-+ ...+..+|++++..++-.+
T Consensus 106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l 180 (570)
T COG4477 106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEEL 180 (570)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344444444444444455555555555554444444444444444444331111 1256666666666665544
No 279
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=74.56 E-value=2.8e+02 Score=36.32 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=33.1
Q ss_pred cCceEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 649 QPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (1113)
Q Consensus 649 ~pFyYfVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKE 724 (1113)
-.|| =..=+.|-...+.++|.++..+|++-..+-..+...+ ..|+....++.+++.++++.+..+..+...
T Consensus 171 d~Ly-KP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lL----e~r~~~~~rl~~l~~elr~~~~~i~~~~~~ 241 (984)
T COG4717 171 DSLY-KPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLL----ESRRAEHARLAELRSELRADRDHIRALRDA 241 (984)
T ss_pred HHhc-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 3444445444555555544444444433333332222 444445555555555555555544444443
No 280
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.53 E-value=73 Score=29.52 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-AADEIRQEAYKHWQS 864 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk-ALdEkRDEAYEeLke 864 (1113)
|...+..++..+..+...+..+......+...++..+..|..-...+. .|.+.++.....+..
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445554555555555555555544433333 333344444444443
No 281
>PLN02678 seryl-tRNA synthetase
Probab=74.42 E-value=17 Score=43.37 Aligned_cols=69 Identities=9% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR---AERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
.+..+...+..+++.++.+|+.+..++..++ ..+.+|+++++.|+++.+.+...+.....++..+...|
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666777788888888888888876533 44567777777777777777776666666665544433
No 282
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.16 E-value=1 Score=55.16 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHR 754 (1113)
Q Consensus 742 EEIDarIkrLE~R 754 (1113)
.+.+..|..|+..
T Consensus 226 ~e~e~~i~~Le~e 238 (722)
T PF05557_consen 226 AEAEQKIKELEAE 238 (722)
T ss_dssp -------------
T ss_pred hhHHHHHHHHHHH
Confidence 3444555555543
No 283
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=74.08 E-value=1.1e+02 Score=31.51 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 826 klKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
....+...+......+..+.+++..+...|+++......|+.+
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444444444444444433
No 284
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.04 E-value=97 Score=31.17 Aligned_cols=19 Identities=5% Similarity=0.342 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLREN 819 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkK 819 (1113)
+++.++..|..+|...+..
T Consensus 13 el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 285
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=73.98 E-value=19 Score=42.24 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---S-YKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRA---E-RdELiEQLKeLReE~KqlReel~EKIKEIdsLQs 730 (1113)
.+..+..++..+++.++..|+.+..++..++. . +.+|.++++.|+++.+.+...+.....++..+-.
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888888888888888866432 2 5677777777777777766655555555544333
No 286
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.75 E-value=50 Score=31.94 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001257 744 IDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (1113)
Q Consensus 744 IDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKK 777 (1113)
+..+|..|-.+++.=...+.|=+..+++|+.|..
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~ 48 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEAEKALEELERLPD 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444444444444444444555555555543
No 287
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.08 E-value=2.5e+02 Score=35.08 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS-------DERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLRe-------E~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
|.-+..++|+..+++.+.+++.-+++..++..+-+....|.+..-.|.+ +++.+--.+..|..++-.+...|.
T Consensus 325 derE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 325 DERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999988888888887776666666555544432 445666667777777766666655
Q ss_pred hccc----CCCHHHHHHHHHHHHHHhhc----CCCChHHHHHHH---HHHHHHHHH
Q 001257 734 MMKN----AISVDDIDGSIRNMEHRIAH----ETLPLKEEKQII---REIKQLKQR 778 (1113)
Q Consensus 734 KLRN----AKSVEEIDarIkrLE~RIQT----gSLSLvEEKKLL---KEIKQLKKq 778 (1113)
+..+ +.---+.+.+|+.||..+.. ..+--.+++++| +|.++++.-
T Consensus 405 kAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnD 460 (654)
T KOG4809|consen 405 KAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKND 460 (654)
T ss_pred HHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4432 33334566677777765432 234445666654 455555444
No 288
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.63 E-value=61 Score=32.50 Aligned_cols=31 Identities=10% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR 694 (1113)
.|..++..|+..|+..+-.+..|..+-+.++
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~ 43 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLR 43 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Confidence 4555666666666655555555443333333
No 289
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.58 E-value=11 Score=42.35 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 001257 1094 LRAQKEAEQ 1102 (1113)
Q Consensus 1094 ~ra~KEAEk 1102 (1113)
.++|||.|.
T Consensus 167 E~arkeheE 175 (299)
T KOG3054|consen 167 EEARKEHEE 175 (299)
T ss_pred HHHHHHHHH
Confidence 334444443
No 290
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=1.3e+02 Score=37.36 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhcccchhH-HHHHhhhHHHHHHHHHHH
Q 001257 769 IREIKQLKQRREQISSSIGEHDE-VQLAFDQKDQIEEKMKFL 809 (1113)
Q Consensus 769 LKEIKQLKKqRKkViAnaa~rAk-IQESidQKEaIqEQIKaL 809 (1113)
+++|+.++..|+.++.++..-++ +.+++...+.+..+++.|
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555554443332221 233344445555555554
No 291
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=72.21 E-value=1.9e+02 Score=33.28 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 844 LQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
..+++..+-.....+|..+..|..-..++.+ ||+
T Consensus 300 ~~~~re~~lq~L~~ay~~y~el~~nl~eG~k-FY~ 333 (353)
T cd09236 300 ATKERERALQSLDLAYFKYKEIVSNLDEGRK-FYN 333 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3445555566667777777777777777766 553
No 292
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=72.18 E-value=1.8e+02 Score=33.00 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=18.2
Q ss_pred cccccccccccc--cccCceEEecCCCCChHHHHHHHH
Q 001257 635 DASESRNIGVEV--VKQPFYFLVKVPRYDDENLREQIK 670 (1113)
Q Consensus 635 DA~d~~~~~~ev--~K~pFyYfVKVPRPDDEeLKAKId 670 (1113)
++.+-|...+.+ ...+-++-|++.-+| |+.-++|.
T Consensus 113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~d-P~~A~~ia 149 (362)
T TIGR01010 113 AFYRYYKKRLSVDVDSVSGILTLNVTAFD-AEEAQKIN 149 (362)
T ss_pred HHHHHHHhceEEeecCCCCeEEEEEEecC-HHHHHHHH
Confidence 455555444443 234445567777744 45555554
No 293
>PLN02320 seryl-tRNA synthetase
Probab=72.00 E-value=14 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 682 SRDAIRDDIQTIRASYKEYAEKL 704 (1113)
Q Consensus 682 kRdAInaELkakRAERdELiEQL 704 (1113)
.|.++..+++.+|++|+.+..++
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 294
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.82 E-value=74 Score=32.99 Aligned_cols=82 Identities=12% Similarity=0.259 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcccC
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEID---SVQSRINMMKNA 738 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA---ERdELiEQLKeLReE~KqlReel~EKIKEId---sLQsaL~KLRNA 738 (1113)
.+.+...+..++..++......+..|..++. .-.+|..++..|..+.+.....+..++.++. .|..+|.... +
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ak-a 96 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAK-A 96 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 4444555555555555554445555555554 5666677777777777766666666666654 3555555443 3
Q ss_pred CCHHHHHHH
Q 001257 739 ISVDDIDGS 747 (1113)
Q Consensus 739 KSVEEIDar 747 (1113)
++...|-+.
T Consensus 97 kn~~av~al 105 (155)
T PF06810_consen 97 KNPKAVKAL 105 (155)
T ss_pred CCHHHHHHh
Confidence 555444433
No 295
>PF15294 Leu_zip: Leucine zipper
Probab=71.68 E-value=1.9e+02 Score=33.14 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS 709 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLRe 709 (1113)
+-+...|..|+.+-++++.+-..+....-....++..|..+|+.++.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777666666666665666666666666666543
No 296
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=71.46 E-value=78 Score=33.53 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
.+++++.-||++|+...-+++.+.+-+..-..++....+.+++.+....-+...|..|-
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv 139 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELV 139 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444444444444444444444555555444443
No 297
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=71.32 E-value=2e+02 Score=33.05 Aligned_cols=19 Identities=11% Similarity=0.539 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 766 KQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViA 784 (1113)
+.+|.++..|+..|..++.
T Consensus 204 ~~ll~~l~~lk~eR~~~~~ 222 (356)
T cd09237 204 EELLEDLNLIKEERQRVLK 222 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776543
No 298
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.03 E-value=1.7e+02 Score=32.13 Aligned_cols=14 Identities=14% Similarity=0.544 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRR 779 (1113)
Q Consensus 766 KKLLKEIKQLKKqR 779 (1113)
++++.+-.+|++.-
T Consensus 84 ~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 84 RSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 299
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.02 E-value=90 Score=39.64 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeL 707 (1113)
..-|..|..+..++.+.+..+...+..+...+.+|..+++.+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 300
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.97 E-value=1.5e+02 Score=31.66 Aligned_cols=82 Identities=20% Similarity=0.375 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCC
Q 001257 837 ESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNN 916 (1113)
Q Consensus 837 IkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnD 916 (1113)
++.++.......++|.....++-..+..||.++......|+ ..-..+..|...|=.++|.||-.=
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~---------------~ee~~~~~y~~~eh~rll~LWr~v 150 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR---------------EEEENFNQYLSSEHSRLLSLWREV 150 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhhhcccccHHHHHHHHH
Confidence 33344444444444444444444444445554444444443 333445677889999999999999
Q ss_pred hHHHHHHHHhhhhhHhhhh
Q 001257 917 DEFRKEYVNSNIRSTLRRL 935 (1113)
Q Consensus 917 keFRkDYeKrnl~Sl~rRq 935 (1113)
-.||..|.. +++.-.|=
T Consensus 151 ~~lRr~f~e--lr~~Terd 167 (182)
T PF15035_consen 151 VALRRQFAE--LRTATERD 167 (182)
T ss_pred HHHHHHHHH--HHHHHHhh
Confidence 999999977 66555443
No 301
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=70.96 E-value=3.4e+02 Score=35.70 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=5.6
Q ss_pred CCCCCCCCcc
Q 001257 943 LGPDEEAPLI 952 (1113)
Q Consensus 943 lnPDEkPpvi 952 (1113)
|-|++-=||-
T Consensus 500 L~~GePCPVC 509 (1047)
T PRK10246 500 LQAGQPCPLC 509 (1047)
T ss_pred CCCCCCcCCC
Confidence 4556655553
No 302
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.84 E-value=1.1e+02 Score=29.95 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA----SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA----ERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKS 740 (1113)
+..++..+..++......-..++...+.+.. ....+...+..|......+......+...+.........+. .
T Consensus 38 ~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~---~ 114 (213)
T cd00176 38 LLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFR---D 114 (213)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3344455555666555555666665555544 34556666666666666666666666665554333332222 1
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 001257 741 VDDIDGSIRNMEHRIAHET 759 (1113)
Q Consensus 741 VEEIDarIkrLE~RIQTgS 759 (1113)
.-++..-|...+..+....
T Consensus 115 ~~~l~~wl~~~e~~l~~~~ 133 (213)
T cd00176 115 ADDLEQWLEEKEAALASED 133 (213)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 2225555666666555443
No 303
>PLN02939 transferase, transferring glycosyl groups
Probab=70.45 E-value=3.6e+02 Score=35.76 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=71.0
Q ss_pred ccccccccccCCCCCCCcccccccccccccccccCCCCCCCcc------cccccccccccccccCceEEecCCCCChHHH
Q 001257 592 VKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTV------DASESRNIGVEVVKQPFYFLVKVPRYDDENL 665 (1113)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~s~k------DA~d~~~~~~ev~K~pFyYfVKVPRPDDEeL 665 (1113)
..-|.+.|.+|-|+|+-.-....|+ .++++..+|.....-. ++....+...+.-...= -.+-..-.+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 133 (977)
T PLN02939 59 RSSNSKLQSNTDENGQLENTSLRTV--MELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDG---EQLSDFQLEDL 133 (977)
T ss_pred cccccccccCccccccccccccccc--cccccCCCCccccccchhhcchhhhccccHhhhhccccc---cccccccHHHH
Confidence 3468899999999998654444443 2333333333222111 11111111111100000 00111235567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~Kq 713 (1113)
---|..+++.|=-+++.|-.....++++..++..|+.+++-|.-.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 134 VGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 778889999999999999999999999999999999999988665543
No 304
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.38 E-value=20 Score=42.02 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSR 731 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRA---ERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsa 731 (1113)
++..+..+++.+++.++..|+++..++...+. ...+|..+.+.|+++.+.+...+.....++..+-..
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666677788888888888888888876432 345677777777777777766655555555444433
No 305
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.38 E-value=2.2e+02 Score=35.82 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=11.0
Q ss_pred ccCceEEecCCCCChHHHHHHHH
Q 001257 648 KQPFYFLVKVPRYDDENLREQIK 670 (1113)
Q Consensus 648 K~pFyYfVKVPRPDDEeLKAKId 670 (1113)
+.+...-+.+.-+ +|+.-+.|.
T Consensus 225 ~~s~ii~Is~~~~-dP~~Aa~il 246 (726)
T PRK09841 225 KESGMLELTMTGD-DPQLITRIL 246 (726)
T ss_pred CCCCeEEEEEeCC-CHHHHHHHH
Confidence 4454434555553 445555553
No 306
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=70.25 E-value=2.1e+02 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 001257 769 IREIKQLKQRREQISS 784 (1113)
Q Consensus 769 LKEIKQLKKqRKkViA 784 (1113)
+..-..|.+.|.++..
T Consensus 73 ~e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 73 MESCENLEKTRQKLSH 88 (307)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 3444667777766433
No 307
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.85 E-value=1.6e+02 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1113)
Q Consensus 798 QKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQ 845 (1113)
++....+++..|..+++.++..+..++..+..+..++.+.+.+-..|.
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444444444444444444444333333
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=69.73 E-value=9.9 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001257 1080 RKKRIAEKAQTRAALRAQKEA 1100 (1113)
Q Consensus 1080 RKkk~aeK~a~~A~~ra~KEA 1100 (1113)
|.|++.-|++-+-.-+.||++
T Consensus 270 kek~er~KaeGklLTakQK~~ 290 (1064)
T KOG1144|consen 270 KEKKERKKAEGKLLTAKQKEE 290 (1064)
T ss_pred HHHHHHHhhhcccchHhhHHH
Confidence 333333333333333334443
No 309
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.49 E-value=66 Score=29.26 Aligned_cols=50 Identities=18% Similarity=0.475 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1113)
Q Consensus 681 QkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQs 730 (1113)
..+-.|..+|...++.--.+-.+|++...+.+.+...+....++|+.+++
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445677777777777777777777777777777777777777776663
No 310
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.18 E-value=97 Score=38.75 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 682 SRDAIRDDIQTIRASYK 698 (1113)
Q Consensus 682 kRdAInaELkakRAERd 698 (1113)
.|++|-+.+++..+=+.
T Consensus 343 ~RDALAAA~kAY~~yk~ 359 (652)
T COG2433 343 ERDALAAAYKAYLAYKP 359 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888777777654333
No 311
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.12 E-value=3.5e+02 Score=35.15 Aligned_cols=118 Identities=11% Similarity=0.292 Sum_probs=61.5
Q ss_pred ccccccccCceE--EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHH
Q 001257 642 IGVEVVKQPFYF--LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDD 689 (1113)
Q Consensus 642 ~~~ev~K~pFyY--fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAI------------------------------naE 689 (1113)
+.+++.++.+-| |.-+|-|-....+..+..|..+-..+.+.-..+ -+.
T Consensus 758 VvVqi~dRq~RYSrfPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~ 837 (1480)
T COG3096 758 VVVKIADRQWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAE 837 (1480)
T ss_pred eEEEechhhhhhhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344555555532 355555666677777776666554443321111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c---CCCHHHHHHHHHHHH----HHhhcCC
Q 001257 690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK---N---AISVDDIDGSIRNME----HRIAHET 759 (1113)
Q Consensus 690 LkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR---N---AKSVEEIDarIkrLE----~RIQTgS 759 (1113)
+..++.+|+++...|.....+..++|..++.-...+..|...+-.+. . ..-++||..++..++ +..|||.
T Consensus 838 ~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~qhG~ 917 (1480)
T COG3096 838 IRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQQHGN 917 (1480)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44456778888777777776666777665554444433333222221 0 024556665555443 3445553
No 312
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=69.01 E-value=2.9e+02 Score=34.20 Aligned_cols=7 Identities=0% Similarity=0.335 Sum_probs=2.7
Q ss_pred CHHHHHH
Q 001257 740 SVDDIDG 746 (1113)
Q Consensus 740 SVEEIDa 746 (1113)
.+++|..
T Consensus 309 k~eeL~~ 315 (531)
T PF15450_consen 309 KAEELAT 315 (531)
T ss_pred hHHHHHH
Confidence 3333333
No 313
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=68.93 E-value=1.3e+02 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 830 VKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 830 LkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
+.++++.+...+..|.+.+..+.+..+..+..+..|
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443344433333333
No 314
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.83 E-value=3.4e+02 Score=34.78 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCCh-HH
Q 001257 693 IRASYKEYAEKLEAAISDERSARE-------SLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL-KE 764 (1113)
Q Consensus 693 kRAERdELiEQLKeLReE~KqlRe-------el~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSL-vE 764 (1113)
.+.+...|.+++...+.+.++.+. .+..++.++..|+..+. .+..++..+..-.+.+...-...| .+
T Consensus 117 ~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~d-----ss~s~~q~e~~~~~~~~~~~~s~l~~~ 191 (716)
T KOG4593|consen 117 LKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLD-----SSLSELQWEVMLQEMRAKRLHSELQNE 191 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555544443333 33333333333333211 233333333332222222222222 34
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001257 765 EKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 765 EKKLLKEIKQLKKqRKkV 782 (1113)
||++=+.+.+|...-..+
T Consensus 192 eke~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 192 EKELDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665543
No 315
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.69 E-value=67 Score=39.97 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHhhhhhHhhhhhccCCCcC
Q 001257 902 CVNQVERVLELWNN-NDEFRKEYVNSNIRSTLRRLKTLDGRSL 943 (1113)
Q Consensus 902 C~~EVEkFMelWNn-DkeFRkDYeKrnl~Sl~rRqlT~DGR~l 943 (1113)
+..-..|.++.|+. ..+||.=.+.--=+..+. ..+||++
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~av~~llGyki~~---~~~~~~r 657 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREAVYSLLGYKIDF---MPNGRVR 657 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE---ETTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeee---cCCCeEE
Confidence 45667788888864 568997766633333332 5556554
No 316
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.46 E-value=2.8e+02 Score=33.70 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVER 908 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEk 908 (1113)
+..+.++.+.+..+.+..+|++.|.++.+-...- ++++.| -..++-..+| .-++.++.-.|....-+
T Consensus 363 ~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~i-k~~e~~---l~~~~~r~e~--~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 363 SVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEI-KKIELF---LEIARGREEL--ESQIVAITLECILLKMH 429 (446)
T ss_pred HHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH-HHHHhh---hHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555554322211 222223 1222223333 44566666666554443
No 317
>PLN02320 seryl-tRNA synthetase
Probab=68.19 E-value=29 Score=42.11 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 001257 769 IREIKQLKQRRE 780 (1113)
Q Consensus 769 LKEIKQLKKqRK 780 (1113)
|.+|-+|...|+
T Consensus 92 vd~l~~ld~~~r 103 (502)
T PLN02320 92 LELVLELYENML 103 (502)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 318
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.05 E-value=95 Score=36.30 Aligned_cols=130 Identities=15% Similarity=0.271 Sum_probs=70.4
Q ss_pred cccccccccccccCceEEecCCCCChHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 637 SESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRS-----------RDAIRDDIQTIRASYKEYAEKLE 705 (1113)
Q Consensus 637 ~d~~~~~~ev~K~pFyYfVKVPRPDDEeLKAKIdeLqKEIeELKQk-----------RdAInaELkakRAERdELiEQLK 705 (1113)
..+|.--.+-+-+.+=..+| .|-..+..-+++.+.....+... ...|...+..+.++=.-|+.+|.
T Consensus 193 ~~eWklEvERV~PqLKv~~~---~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 193 PAEWKLEVERVLPQLKVTIR---ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred HHHHHHHHHHHhhhheeecc---CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34676666654455521222 34456666666665554444433 23333444444555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcC------CCChHHHHHHHHH
Q 001257 706 AAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHE------TLPLKEEKQIIRE 771 (1113)
Q Consensus 706 eLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTg------SLSLvEEKKLLKE 771 (1113)
.+++++++.+..+.+-..+++.+...+..+. ....+|..++..+-..|+-. +=||+.=|+.|..
T Consensus 270 ~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t--~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~k 339 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQEKYKQASEGVSERT--RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTK 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 8877777777777777776666555444332 23444444444444444333 2356665655543
No 319
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=67.97 E-value=1.9e+02 Score=31.59 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1113)
Q Consensus 818 kKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeL 862 (1113)
.+|.++++++...+..|+.++++ |.++|-.+.+.|...|...
T Consensus 139 ~KL~kae~el~~Ak~~Ye~lN~~---L~~ELP~L~~~ri~f~~p~ 180 (211)
T cd07588 139 QKLTKAEEELQQAKKVYEELNTE---LHEELPALYDSRIAFYVDT 180 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhhHHHHHH
Confidence 44556777788888888888877 8888888888887776544
No 320
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=67.82 E-value=1.8e+02 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQF 848 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEEL 848 (1113)
++-+..++..+...+..|+..+
T Consensus 187 rdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 187 RDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 321
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.57 E-value=74 Score=30.43 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001257 747 SIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (1113)
Q Consensus 747 rIkrLE~RIQTgSLSLvEEKKLLKEIKQL 775 (1113)
.+..|--+++.=...+.|=+.++.||..|
T Consensus 14 ~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 14 QLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333444444444444444
No 322
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=67.47 E-value=2.1e+02 Score=31.84 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 745 DarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLE 824 (1113)
...|..||.++ |++.+-+..|-+.|+.+....+.+++.-..++.-+. ...+...-..+-.+..++..+.
T Consensus 28 ~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~-~~~Ls~als~laev~~~i~~~~ 96 (234)
T cd07665 28 LQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSED-NTALSRALSQLAEVEEKIEQLH 96 (234)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 33455555555 677888888999999887777777765444443321 0112222223333333333322
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHH--HHHH
Q 001257 825 A-ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW------------KYKDDTKQ--ANDL 889 (1113)
Q Consensus 825 e-klKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY------------qnRR~irK--AREL 889 (1113)
+ +.....-.+.+.=.++-.+...++.+-..|.++|..|..+...+..+....- +....++. +|=.
T Consensus 97 ~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~ 176 (234)
T cd07665 97 QEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVT 176 (234)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 1 1122222344444666667777888889999999988888665555444322 22222221 1112
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001257 890 ASKGDREALQHLCVNQVERVLELWNNNDEFRK 921 (1113)
Q Consensus 890 AakgdveELeelC~~EVEkFMelWNnDkeFRk 921 (1113)
.++.+...+-..+..|++||-..-. ..||.
T Consensus 177 ~a~~~fe~is~~ik~El~rFe~er~--~Dfk~ 206 (234)
T cd07665 177 QYERDFERISATVRKEVIRFEKEKS--KDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 2355777888889999999977643 45665
No 323
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.46 E-value=3.4e+02 Score=34.31 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKL----HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK----~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
..+.++..+.+.+..+...+.....++-.+..+ .....++|.-+..++.-+....-.+=.+.-.||.++...|.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444445555544444333333333333323 33344556666666666667777777777778888777665
No 324
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.43 E-value=88 Score=28.97 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
++|..|..|-..|..+-..+...++.|. .++..+...+..+.....++-..+..|+..
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr-------~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLR-------AKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555555554 333344444444444455555555555543
No 325
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.33 E-value=1.3e+02 Score=32.16 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE 836 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DE 836 (1113)
..+..+|..|..++..|..++..+......+.++..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555445544444333
No 326
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=3.6e+02 Score=34.54 Aligned_cols=14 Identities=7% Similarity=-0.092 Sum_probs=7.8
Q ss_pred HhhhhhHhhhhhcc
Q 001257 925 NSNIRSTLRRLKTL 938 (1113)
Q Consensus 925 Krnl~Sl~rRqlT~ 938 (1113)
.|+-..+..||...
T Consensus 668 ~Cvq~r~etRqRKC 681 (698)
T KOG0978|consen 668 ECVQTRYETRQRKC 681 (698)
T ss_pred HHHHHHHHHhcCCC
Confidence 45555666666544
No 327
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=67.12 E-value=4e+02 Score=35.04 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=4.8
Q ss_pred hhhhhhhcccc
Q 001257 432 EIENAYVLSFR 442 (1113)
Q Consensus 432 ~~~~~~~~~~~ 442 (1113)
+.-.++..+|-
T Consensus 163 ~lq~~vF~s~~ 173 (980)
T KOG0980|consen 163 ELQQTVFSSMN 173 (980)
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 328
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.03 E-value=1.4e+02 Score=29.74 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 842 dELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
.-|.+.++.+...+++....+..++++...
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 329
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.66 E-value=1.8e+02 Score=30.81 Aligned_cols=11 Identities=9% Similarity=0.326 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001257 768 IIREIKQLKQR 778 (1113)
Q Consensus 768 LLKEIKQLKKq 778 (1113)
+|.++..++..
T Consensus 89 al~~k~~~e~~ 99 (221)
T PF04012_consen 89 ALQRKADLEEQ 99 (221)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 330
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=66.23 E-value=19 Score=43.40 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHhhhhhHh
Q 001257 858 AYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWN-----NNDEFRKEYVNSNIRSTL 932 (1113)
Q Consensus 858 AYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWN-----nDkeFRkDYeKrnl~Sl~ 932 (1113)
-|.||+.||.=.......=|.|...- |.-|| +|++.+| +-.-|++-|-..-+.
T Consensus 77 ~vdhI~nlrrIiagyl~~aygY~~~~--a~~lA-----------------~fit~YNAv~R~~~~~~~~~Y~~~v~~--- 134 (489)
T PF05262_consen 77 RVDHINNLRRIIAGYLEAAYGYSDED--AETLA-----------------TFITIYNAVYRGDLDYFKKKYKNVVIK--- 134 (489)
T ss_pred CccHHHHHHHHHHHHHHHhcCCChhh--HHHHH-----------------HHHHHHHHHHcCCHHHHHHHhhHHHHh---
Confidence 37888888887777666556554432 22232 4666655 445566666554443
Q ss_pred hhhhccC--CCcCCCCCCC----CccCcc
Q 001257 933 RRLKTLD--GRSLGPDEEA----PLIRPF 955 (1113)
Q Consensus 933 rRqlT~D--GR~lnPDEkP----pvip~~ 955 (1113)
-||.+ |=+|..++=| +|||-.
T Consensus 135 --~l~~~k~Gls~~y~eWpG~tqI~IPL~ 161 (489)
T PF05262_consen 135 --NLTPEKAGLSRRYSEWPGKTQIVIPLS 161 (489)
T ss_pred --hcChhhcccccccccCCCCceEEEecc
Confidence 34444 4445555544 467653
No 331
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=66.06 E-value=2.6e+02 Score=32.40 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 803 qEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
..+|.--+.|+...|+.+..|...+=+.-..|+....+ ++.+++.==..|..+.-|+.+++..
T Consensus 139 ~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Eee-------Lqkly~~Y~l~f~nl~yL~~qldd~ 201 (338)
T KOG3647|consen 139 GSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEE-------LQKLYQRYFLRFHNLDYLKSQLDDR 201 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444445555555555555554444444444443333 2222222333455555555555543
No 332
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=65.77 E-value=82 Score=29.13 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 810 KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
++-++++++-++.++.++..+.++.+++-.+.+.+.+..+.-.+.-+..+.....+-.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444554444433
No 333
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=65.52 E-value=1.8e+02 Score=32.80 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=21.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHhh
Q 001257 755 IAHETLPLKEEKQIIREIKQLKQRREQIS 783 (1113)
Q Consensus 755 IQTgSLSLvEEKKLLKEIKQLKKqRKkVi 783 (1113)
|.|.-|+-..|.-+++..+..+..|.+..
T Consensus 1 ma~~~i~~s~e~~~~~Kle~ik~Ir~ktl 29 (286)
T KOG4451|consen 1 MAHQPIPRSSEFLFLQKLELIKSIRSKTL 29 (286)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888877777776543
No 334
>PRK11519 tyrosine kinase; Provisional
Probab=65.49 E-value=3e+02 Score=34.51 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=8.2
Q ss_pred EecCCCCChHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIK 670 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKId 670 (1113)
-|.+.- .||.+-+.|.
T Consensus 231 ~Is~~~-~dP~~Aa~ia 246 (719)
T PRK11519 231 SLTYTG-EDREQIRDIL 246 (719)
T ss_pred EEEEEc-CCHHHHHHHH
Confidence 345554 3555555554
No 335
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=65.30 E-value=2.7e+02 Score=32.33 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRD 688 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAIna 688 (1113)
+.+.+...+..++..+..+......+..
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655544443
No 336
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=65.29 E-value=1.2e+02 Score=29.02 Aligned_cols=95 Identities=11% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Q 001257 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNM 751 (1113)
Q Consensus 672 LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrL 751 (1113)
|+.++..+.+.+..+...+..+..+-..+.+.+..|..+.......+..-.+.++.|...+.+++ ....-=..-|..|
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~--~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN--TQLSKSSELIEQL 78 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHhHHHHHHH
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001257 752 EHRIAHETLPLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 752 E~RIQTgSLSLvEEKKLLKEIKQLKKq 778 (1113)
.. =|+.++..|+.|+++
T Consensus 79 ~~----------~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 79 KE----------TEKEFVRKLKNLEKE 95 (96)
T ss_pred HH----------HHHHHHHHHHHhhcc
No 337
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=65.22 E-value=57 Score=28.75 Aligned_cols=56 Identities=11% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 001257 856 QEAYKHWQSLKKQAYDKNQ-HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNN 915 (1113)
Q Consensus 856 DEAYEeLkeLRKERDEkNk-eFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNn 915 (1113)
+..|..++++.++++.... .+-..+..+.+++.|+...+...+- .++..++..|+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~----~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 12 DAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAA----EEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHHHHHHHH
Confidence 3444444444444444333 4555666778899999888855544 777788888864
No 338
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.17 E-value=1e+02 Score=30.64 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001257 768 IIREIKQ 774 (1113)
Q Consensus 768 LLKEIKQ 774 (1113)
.+.|++.
T Consensus 43 ~~~EL~~ 49 (121)
T PRK09343 43 ALEELEK 49 (121)
T ss_pred HHHHHHc
Confidence 3333333
No 339
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=65.01 E-value=2.2e+02 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 001257 715 RESLKSKRQEIDSVQSRINMMKNAISVDDIDGSI 748 (1113)
Q Consensus 715 Reel~EKIKEIdsLQsaL~KLRNAKSVEEIDarI 748 (1113)
...+...+.+.+.+.+.|..+- +|..++-++-
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E--~sfsdl~~ry 99 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLE--KSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--hhHHHHHHHH
Confidence 3345555555555555555443 3444444443
No 340
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.63 E-value=3.5e+02 Score=33.44 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=17.0
Q ss_pred ccccccccccccccCCCCCcccccCccccc
Q 001257 343 GNGPVRDDLVSVFHNSDAKSETETGFDSVD 372 (1113)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1113)
|+.+----+-|.|-.+-++.-+...|-+--
T Consensus 64 G~~~~~~~~gs~~~~s~~t~~g~g~fgs~~ 93 (508)
T KOG3091|consen 64 GTASTGTAAGSGFGTSTATGAGGGFFGSQS 93 (508)
T ss_pred cCCCCCcccccccccCCccCCccCcccccc
Confidence 344444445566666667666666665543
No 341
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.45 E-value=2.8e+02 Score=32.34 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
...+-..++.++.++..|+..++++.+...++..+++..|......|..+.
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777777777777777777777553
No 342
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.42 E-value=2.4e+02 Score=32.77 Aligned_cols=17 Identities=0% Similarity=0.001 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKT 680 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELK 680 (1113)
..-+++..|++.|..+-
T Consensus 206 ~~la~~a~LE~RL~~LE 222 (388)
T PF04912_consen 206 QQLARAADLEKRLARLE 222 (388)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34566666766666553
No 343
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.30 E-value=3.3e+02 Score=33.10 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 001257 875 HFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW 913 (1113)
Q Consensus 875 eFYqnRR~irKARELAakgdveELeelC~~EVEkFMelW 913 (1113)
.||+++..+.-.+-. -.+...+.++|..|+.-+-...
T Consensus 185 e~~e~~e~~~s~~~~--~k~~k~~ae~~~qq~q~~a~~~ 221 (438)
T COG4487 185 EFKENEEQRESKWAI--LKKLKRRAELGSQQVQGEALEL 221 (438)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHhc
Confidence 577666655433322 2344566778888877766544
No 344
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.20 E-value=72 Score=30.60 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLREN 819 (1113)
Q Consensus 806 IKaLKKELDELRkK 819 (1113)
|..|+-|+++++.+
T Consensus 20 I~LLqmEieELKek 33 (79)
T PRK15422 20 ITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555544444
No 345
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=64.16 E-value=1.3e+02 Score=32.79 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQ 729 (1113)
|.+....++..|..-..+-..|...++-.+.++......-+..+.+...++.....-..+|+.|+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ 174 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556655555555666776666665555555444444444444443333333333333
No 346
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.98 E-value=68 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
.+...+.+++..+.++..++-.++..|++|....+++|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445566666666666667777778888877776654
No 347
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.91 E-value=1.7e+02 Score=35.53 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=12.0
Q ss_pred CCccccCccccccccccccCCC
Q 001257 459 GSVSSIPEDVNVENVGIQHAGG 480 (1113)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (1113)
|...++-.---+-|+.+-|||.
T Consensus 21 Gr~~~~sas~~at~~aa~~agd 42 (575)
T KOG4403|consen 21 GRSLWISASELATNVAAVVAGD 42 (575)
T ss_pred chhhhhHHHHhhcchhhhhcCC
Confidence 4444444444556666666665
No 348
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=63.67 E-value=2.3 Score=42.44 Aligned_cols=88 Identities=10% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD---KNQHFWKYKD 881 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE---kNkeFYqnRR 881 (1113)
.+..+...++..+..+..+...++.+...+......+......+..|......++.+++.|...... .....-+-|+
T Consensus 18 ~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~Ire 97 (138)
T PF06009_consen 18 RLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRE 97 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3334444444444444444444444444444555555555555555555566666666666665555 6667777777
Q ss_pred HHHHHHHHHhc
Q 001257 882 DTKQANDLASK 892 (1113)
Q Consensus 882 ~irKARELAak 892 (1113)
.+..||+.|.+
T Consensus 98 lI~qAR~~An~ 108 (138)
T PF06009_consen 98 LIAQARDAANR 108 (138)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 88888888754
No 349
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.04 E-value=57 Score=38.29 Aligned_cols=75 Identities=15% Similarity=0.358 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS------YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAE------RdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~K 734 (1113)
+.+.+..++..|..++++++.....|...+..++.. ..+....++.++..+..+...+.+...++..|++.+..
T Consensus 328 ~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 328 DRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446888999999999999988888888887776542 23444555556566666666666666666666665544
Q ss_pred c
Q 001257 735 M 735 (1113)
Q Consensus 735 L 735 (1113)
.
T Consensus 408 ~ 408 (451)
T PF03961_consen 408 S 408 (451)
T ss_pred h
Confidence 3
No 350
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=63.01 E-value=2.2e+02 Score=30.52 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=54.4
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 786 IGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 786 aa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
.....-+...+.++..+...+..+.+.++.++.++.++...-+.-.+|+..+..+|.+++.....+.. .+..+
T Consensus 97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~-------~~e~i 169 (216)
T cd07627 97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKK-------EFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33344444556666666666667777777777776665421111123444444444444444333332 23222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HHHH
Q 001257 866 KKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERV---LELW 913 (1113)
Q Consensus 866 RKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkF---MelW 913 (1113)
-+....-...|.. .++.++ ...|..|...+++.+ +++|
T Consensus 170 s~~~k~El~rF~~-----~r~~df-----k~~l~~~~e~~ie~~k~~ie~W 210 (216)
T cd07627 170 SELIKSELERFER-----ERVEDF-----RNSVEIYLESAIESQKELIELW 210 (216)
T ss_pred HHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333432 223334 345667777777765 5666
No 351
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.97 E-value=1.6e+02 Score=32.13 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
+++++.|..|+++....++.|..+++-+..+. -+....++..++++...|++.|.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vt-------------pedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVT-------------PEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555555444443332222 13344566666666666654443
No 352
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=62.86 E-value=4.7e+02 Score=34.36 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--HHHHHHHH----HHHHHHHHHHHhCC
Q 001257 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD--REALQHLC----VNQVERVLELWNNN 916 (1113)
Q Consensus 843 ELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgd--veELeelC----~~EVEkFMelWNnD 916 (1113)
++..++..-...-+.+.+++.+|-...-+.-+ ..--+|-++|..|+ .++|+.-- -.+=+++.+...+-
T Consensus 1136 elfneheeeS~ifdaa~nKiakiHe~AfEiek------nlkeQaielank~dpeLraiead~deeitQkdee~eaiIa~l 1209 (1424)
T KOG4572|consen 1136 ELFNEHEEESGIFDAAGNKIAKIHEIAFEIEK------NLKEQAIELANKGDPELRAIEADIDEEITQKDEETEAIIAML 1209 (1424)
T ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCchHHHHHhhhhHHHHhhhHHHHHHHHHH
Confidence 34444444555555555555555444333222 12235667777774 34443221 12223344444444
Q ss_pred hHHHHHHHHhhhhhHhhhhh
Q 001257 917 DEFRKEYVNSNIRSTLRRLK 936 (1113)
Q Consensus 917 keFRkDYeKrnl~Sl~rRql 936 (1113)
+-||..-+..+ --+||||
T Consensus 1210 d~d~dh~~de~--ekdreqL 1227 (1424)
T KOG4572|consen 1210 DIDIDHDRDEI--EKDREQL 1227 (1424)
T ss_pred HHHHHhhHHHH--HHHHHHH
Confidence 55555444432 2355554
No 353
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=62.80 E-value=3.2e+02 Score=32.33 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHhCChHHHHHH
Q 001257 854 IRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLE-LWNNNDEFRKEY 923 (1113)
Q Consensus 854 kRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMe-lWNnDkeFRkDY 923 (1113)
........+..|+.=+..-...|..+-..+ +|.......++.+-..|..|+.++.+ --.....||.+|
T Consensus 326 ~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev--~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~ 394 (412)
T PF04108_consen 326 SIQAYIDELEQLCEFYEGFLSAYDSLLLEV--ERRRAVRDKMKKIIREANEELDKLREEEQRRREAFLKEY 394 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444445444444444444433333 23333355666777778888888765 233445555555
No 354
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=62.80 E-value=3.2e+02 Score=32.34 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 823 AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 823 LEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
+..++..+..+|++...-+..-++-|........+...++..|-++--
T Consensus 220 lK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l 267 (391)
T KOG1850|consen 220 LKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETL 267 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677788888877777777777777777777777776665433
No 355
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=62.68 E-value=76 Score=36.17 Aligned_cols=114 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR------------ASYKEYAEKLEAAISDERSARESLKSKRQEID--- 726 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakR------------AERdELiEQLKeLReE~KqlReel~EKIKEId--- 726 (1113)
||++......+..+++..+.+..++.++|.+|+ ++|+-|+.+-.+| -+..-..+|.++.
T Consensus 172 DPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeEl------G~q~s~Gria~Le~eL 245 (330)
T KOG2991|consen 172 DPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEEL------GHQASEGRIAELEIEL 245 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHH------HhhhhcccHHHHHHHH
Q ss_pred HHHHHH-hhcccCCCHHHHHHHHHHHHH---HhhcCCCChHHH-HHHHHHHHHHHHHHHHhh
Q 001257 727 SVQSRI-NMMKNAISVDDIDGSIRNMEH---RIAHETLPLKEE-KQIIREIKQLKQRREQIS 783 (1113)
Q Consensus 727 sLQsaL-~KLRNAKSVEEIDarIkrLE~---RIQTgSLSLvEE-KKLLKEIKQLKKqRKkVi 783 (1113)
.||+.. ..++ +|-++|+.-|..|.. .|++..|-|.++ |..=++|.+|++-..++.
T Consensus 246 AmQKs~seElk--ssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 246 AMQKSQSEELK--SSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHhhHHHHH--HhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=62.60 E-value=1.6e+02 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 860 KHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 860 EeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
.....|+..+......|...+...
T Consensus 88 ~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 88 TQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544443
No 357
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.49 E-value=38 Score=38.80 Aligned_cols=15 Identities=47% Similarity=0.496 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001257 1085 AEKAQTRAALRAQKE 1099 (1113)
Q Consensus 1085 aeK~a~~A~~ra~KE 1099 (1113)
.||..++-+.|-||+
T Consensus 384 fekieareerrkqke 398 (445)
T KOG2891|consen 384 FEKIEAREERRKQKE 398 (445)
T ss_pred HHHHHHHHHHHhhhH
Confidence 334444433333333
No 358
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=62.21 E-value=2.9e+02 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 850 AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 850 ALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
.+-.+-+.|.+..--|--++|++..-...-.|....||+|
T Consensus 137 DfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardl 176 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3345567788888888889999888888888888888888
No 359
>PLN02678 seryl-tRNA synthetase
Probab=61.97 E-value=52 Score=39.39 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 001257 768 IIREIKQLKQRREQ 781 (1113)
Q Consensus 768 LLKEIKQLKKqRKk 781 (1113)
+|.+|-+|...|.+
T Consensus 31 ~id~il~ld~~~r~ 44 (448)
T PLN02678 31 LVDEVIALDKEWRQ 44 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666655544
No 360
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=61.72 E-value=53 Score=31.07 Aligned_cols=45 Identities=11% Similarity=0.337 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 688 DDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 688 aELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
.-|+.+|++-+.+..++..++.+...|...+...+.||..++..+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v 48 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555555555555555433
No 361
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=61.37 E-value=22 Score=43.49 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQS 674 (1113)
Q Consensus 663 EeLKAKIdeLqK 674 (1113)
|.+.+.|+.+.+
T Consensus 27 pdl~a~~as~~~ 38 (591)
T KOG2412|consen 27 PDLVAEIASVEK 38 (591)
T ss_pred hhHHHHhhhhhh
Confidence 345555554443
No 362
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.17 E-value=3e+02 Score=31.54 Aligned_cols=62 Identities=19% Similarity=0.385 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 798 QKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
.++....+|...+.|+..+..++...+++++++. .+|.++...+-.+..++-+....+..++
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~-------~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIK-------ERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666677777777776666665555555 4444444445555555555555554443
No 363
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.89 E-value=2.8e+02 Score=31.16 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQ 845 (1113)
..+|.+..++-+.|..+..++. ..|-..++.++..++.++++..... ..+...+...-.++....
T Consensus 73 ~~~L~qt~~~A~~~~~~ae~l~------------~~i~~~l~~l~~~~~~~~Kk~~e~~---~~lq~el~~~~~eL~ksK 137 (264)
T cd07654 73 GAWLEGLDAVAQSRQNRCEAYR------------RYISEPAKTGRSAKEQQLKKCTEQL---QRAQAEVQQTVRELSKSR 137 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3455666666666665422211 1333455566666666655433322 233323333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 001257 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVN 925 (1113)
Q Consensus 846 EELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeK 925 (1113)
+.+..+-..-..++.+...--++.......|+..|..+.|+++-+.....+.-..+..+--|=.+.+-..|..-.+.|..
T Consensus 138 K~Y~~~~~~~~~ar~K~~~a~~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY~~ 217 (264)
T cd07654 138 KTYFEREQVAHLAREKAADVQAREARSDLSIFQSRTSLQKASVKLSARKAECSSKATAARNDYLLNLAATNAHQDRYYQT 217 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332222222223333221111222233555556655555544433322222223334444445555555555444443
Q ss_pred hhhhhHhhhhhccCCC
Q 001257 926 SNIRSTLRRLKTLDGR 941 (1113)
Q Consensus 926 rnl~Sl~rRqlT~DGR 941 (1113)
-+|-+..+ .||+
T Consensus 218 -dLP~lld~---ld~~ 229 (264)
T cd07654 218 -DLPAIIKA---LDGE 229 (264)
T ss_pred -hHHHHHHH---Hhcc
Confidence 45555443 5544
No 364
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.81 E-value=2.7e+02 Score=30.81 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1113)
Q Consensus 818 kKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeL 862 (1113)
.+|...++.+...+..|+.++.+ |..+|-.+.+.|-..|...
T Consensus 145 ~KL~kae~el~~Ak~~ye~~N~~---L~~ELP~l~~~r~~f~~p~ 186 (225)
T cd07590 145 AKLEQAEKALAAARADFEKQNIK---LLEELPKFYNGRTDYFQPC 186 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHccHHHHHH
Confidence 45556666677777777777766 7788888888887765543
No 365
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.45 E-value=83 Score=33.78 Aligned_cols=19 Identities=5% Similarity=0.202 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHhhcC
Q 001257 740 SVDDIDGSIRNMEHRIAHE 758 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTg 758 (1113)
+.+.|+.+|.++|.+.+..
T Consensus 167 ~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 167 RFEQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5566777777777776654
No 366
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.35 E-value=2.9e+02 Score=30.72 Aligned_cols=154 Identities=11% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CHHHHHHHH
Q 001257 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS--DERSARESLKSKRQEIDSVQSRINMMKNAI-SVDDIDGSI 748 (1113)
Q Consensus 672 LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLRe--E~KqlReel~EKIKEIdsLQsaL~KLRNAK-SVEEIDarI 748 (1113)
|+..|..++++-+.|..+|+.+-++...|+.+|+..|. .+..++...-.-+++-+-.-.....|.+.+ +.+...-.+
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 749 RNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQ 828 (1113)
Q Consensus 749 krLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklK 828 (1113)
..|-.-+.|- --+=.=-++|++..++| .|++.+.+++++.-|-...++|..
T Consensus 97 e~LKdtq~Tv-------~AmK~~~k~mK~~ykkv------------nId~IedlQDem~Dlmd~a~EiQE---------- 147 (218)
T KOG1655|consen 97 ESLKDTQATV-------AAMKDTNKEMKKQYKKV------------NIDKIEDLQDEMEDLMDQADEIQE---------- 147 (218)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHccC------------CHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAADEI 854 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkALdEk 854 (1113)
+|.--|+...-....|-.+|.+|-..
T Consensus 148 ~Lgr~y~~peide~dL~aELdaL~~E 173 (218)
T KOG1655|consen 148 VLGRNYNTPDIDEADLDAELDALGQE 173 (218)
T ss_pred HHhhccCCCCcCHHHHHHHHHHHHhH
No 367
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.15 E-value=2.3e+02 Score=29.52 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 765 EKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 765 EKKLLKEIKQLKKqRKk 781 (1113)
+++.+.-...|++.+..
T Consensus 2 e~K~l~v~~kLK~~~~e 18 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESE 18 (140)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 45666666666666543
No 368
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=58.90 E-value=2.8e+02 Score=30.54 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhh
Q 001257 898 LQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRR 934 (1113)
Q Consensus 898 LeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rR 934 (1113)
++..+..+|..+...+-.-.+-|-.+.|.+++....=
T Consensus 201 ~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 201 YNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888899899999999999999998874
No 369
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=58.86 E-value=40 Score=31.88 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAAT---QAVKKLHREESEKLKRLLGQFKAADE 853 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEekl---KALkKK~DEIkaEIdELQEELkALdE 853 (1113)
+.|+++..+.++|+..++.++..+ .++.+|++.+...+..++..+.++..
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333 24666666666666666665555443
No 370
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.82 E-value=40 Score=38.61 Aligned_cols=70 Identities=36% Similarity=0.345 Sum_probs=33.6
Q ss_pred CCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001257 1037 PKLTKEEEEMARKAEEKRKEEATAKLREQRRLE-------EKAKAQ-EALERKKRIAEKAQTRAALRAQKEAEQKEKVRR 1108 (1113)
Q Consensus 1037 pk~~KEeee~~~k~~~~~~e~~~ak~kE~kr~e-------e~~Kak-~a~eRKkk~aeK~a~~A~~ra~KEAEkKeKErE 1108 (1113)
.++.++.+|..| ++++...+.+....+.+|++ +.+|.. .++.||+|..||-+++ ...-||-|.|-|+.|
T Consensus 344 kkr~eeaeerqr-aeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeeklk~e--~qkikeleek~~eee 420 (445)
T KOG2891|consen 344 KKREEEAEERQR-AEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKLKAE--EQKIKELEEKIKEEE 420 (445)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344444455444 33333333444445555555 222222 3345566666665544 334466666666555
Q ss_pred h
Q 001257 1109 L 1109 (1113)
Q Consensus 1109 K 1109 (1113)
.
T Consensus 421 d 421 (445)
T KOG2891|consen 421 D 421 (445)
T ss_pred H
Confidence 3
No 371
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.81 E-value=1.3e+02 Score=35.93 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
.++.++..++.++..++.++-++|..|+.++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 372
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=58.69 E-value=3e+02 Score=30.71 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001257 896 EALQHLCVNQVERVLELW 913 (1113)
Q Consensus 896 eELeelC~~EVEkFMelW 913 (1113)
..||.++..=|-.+...|
T Consensus 205 d~lQ~l~E~rv~~ln~i~ 222 (234)
T cd07686 205 DSLQKMQEEMIKALKGIL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666666
No 373
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=58.53 E-value=1.8e+02 Score=28.09 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001257 747 SIRNME 752 (1113)
Q Consensus 747 rIkrLE 752 (1113)
.|..|+
T Consensus 96 ~~~k~e 101 (126)
T PF13863_consen 96 EISKLE 101 (126)
T ss_pred HHHHHH
Confidence 333333
No 374
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.12 E-value=43 Score=34.88 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREE 837 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEI 837 (1113)
.+..|+..+++++.+.+..+++++++.+.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 375
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=58.12 E-value=1.2e+02 Score=35.62 Aligned_cols=58 Identities=12% Similarity=0.356 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 001257 724 EIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 724 EIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKqRKk 781 (1113)
.++.|...+..+..+-.++.+..++..|+..+....+ ....=.+++++++.|+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~ 67 (364)
T TIGR00020 8 RIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDT 67 (364)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555557889999999999999988876 455556788888888877654
No 376
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=58.04 E-value=3.8e+02 Score=33.18 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhcCC-CChHHHHHHHHHHHH
Q 001257 745 DGSIRNMEHRIAHET-LPLKEEKQIIREIKQ 774 (1113)
Q Consensus 745 DarIkrLE~RIQTgS-LSLvEEKKLLKEIKQ 774 (1113)
+..|.+|-.-++.+. +.-.+|+++|.+..+
T Consensus 160 ~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ 190 (508)
T PF00901_consen 160 NKQLDRLARALQKESRERTQDERKMVEEYRQ 190 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445667777777665 688899999887654
No 377
>PRK11546 zraP zinc resistance protein; Provisional
Probab=57.91 E-value=84 Score=32.79 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001257 860 KHWQSLKK 867 (1113)
Q Consensus 860 EeLkeLRK 867 (1113)
.+|..||.
T Consensus 96 kEI~~Lr~ 103 (143)
T PRK11546 96 KEMENLRQ 103 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 378
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.61 E-value=1.4e+02 Score=36.76 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
++++++.+....+.|..+..++....+.....+.++.
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333433333334444444444444444444444443
No 379
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.57 E-value=3e+02 Score=30.44 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Q 001257 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQ----------EAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN-DL 889 (1113)
Q Consensus 824 EeklKALkKK~DEIkaEIdELQEELkALdEkRD----------EAYEeLkeLRKERDEkNkeFYqnRR~irKAR-EL 889 (1113)
-..+....+.|.....+-......++.+...+. ..+..+..+++..++....|.+..-.+.+|| +|
T Consensus 130 ~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~akNeY 206 (241)
T cd07656 130 LNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEY 206 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555554444555555554444 2344455566666666666776666666666 44
No 380
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.14 E-value=2.2e+02 Score=28.67 Aligned_cols=88 Identities=15% Similarity=0.286 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 764 EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843 (1113)
Q Consensus 764 EEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdE 843 (1113)
.=.++|.=|-.|=..|.. .+..++.+..++..+..++..+...+..++.++..+. .++..
T Consensus 32 ~~~~vin~i~~Ll~~~~r-------------~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e-------re~~~ 91 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDR-------------DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE-------RELAS 91 (151)
T ss_pred cHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 335566666666666543 3456667777778888888877777666555555555 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 844 LLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 844 LQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
++.....+......+-..++.++++...
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 92 AEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 381
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.11 E-value=3.1e+02 Score=30.38 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1113)
Q Consensus 796 idQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk 849 (1113)
+..+..+.+.++.+...+..+......++..+.++..+|.+++.+...+.....
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666665566666555555555554444433
No 382
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.95 E-value=87 Score=28.33 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 822 KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 822 kLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
.|...+..|+.+++.|..+++.|.....++.++=..|...|+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555556666666555555554444444443
No 383
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=56.70 E-value=1.4e+02 Score=35.20 Aligned_cols=58 Identities=10% Similarity=0.381 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 001257 724 EIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 724 EIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKqRKk 781 (1113)
.++.|...+..+...-.++.+..++..|+..+....+ ....=++++++++.|+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~ 67 (367)
T PRK00578 8 RLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDT 67 (367)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555456788899999999999987765 444445677777777666543
No 384
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=56.68 E-value=3.2e+02 Score=30.40 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 834 ~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
+...+..++..+.+++.+...++.+...++
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444445555555555555555554444
No 385
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.31 E-value=5.7e+02 Score=33.19 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 697 YKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 697 RdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
-.-|-.-||+...|++..|.....+|.+.
T Consensus 47 ~~hld~aLkec~~qlr~~ree~eq~i~~~ 75 (769)
T PF05911_consen 47 VSHLDGALKECMRQLRQVREEQEQKIHEA 75 (769)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445555555556665555555555433
No 386
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.28 E-value=69 Score=39.30 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 807 KFLRKEADSLRENVIKAEAATQAVKKLHREE-------SEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 807 KaLKKELDELRkKLkkLEeklKALkKK~DEI-------kaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
+.+++++..+..+|..+++++.++..++.+- ..++.++.+++.++....+++|.+|.+|-.++.+.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555554444221 12577777888888888888888888777655543
No 387
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=56.26 E-value=2.9e+02 Score=29.77 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=16.0
Q ss_pred HHHhCChHHHHHHHHhhhhhHhhhhhcc
Q 001257 911 ELWNNNDEFRKEYVNSNIRSTLRRLKTL 938 (1113)
Q Consensus 911 elWNnDkeFRkDYeKrnl~Sl~rRqlT~ 938 (1113)
...+.-..+|..|+... +.++.++...
T Consensus 175 ~~v~~~~~~~~~~~~~~-~~~~~~~Q~l 201 (236)
T cd07651 175 NAVKALRELNEIWNREW-KAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33334456677787765 5666666544
No 388
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.13 E-value=48 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (1113)
Q Consensus 798 QKEaIqEQIKaLKKELDELRkKLkkLEeklKALk 831 (1113)
+...+.++|..|-.++.+|+..+..+-++-.+|.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555444443333333
No 389
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=56.12 E-value=5.8e+02 Score=33.28 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 853 EIRQEAYKHWQSLKKQAYDKNQH 875 (1113)
Q Consensus 853 EkRDEAYEeLkeLRKERDEkNke 875 (1113)
.+||.-.++|++|-.-+..-+..
T Consensus 532 rQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 532 RQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777677777666655554443
No 390
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.91 E-value=5.2e+02 Score=32.62 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=10.6
Q ss_pred hhhhccCCCcCCCCCCC
Q 001257 933 RRLKTLDGRSLGPDEEA 949 (1113)
Q Consensus 933 rRqlT~DGR~lnPDEkP 949 (1113)
.-.-..+-|+.+|-.-|
T Consensus 400 ~a~~~~~~rIid~A~~p 416 (726)
T PRK09841 400 KSSAIGNVRIIDPAVTQ 416 (726)
T ss_pred hccCCCceeeccCCCCC
Confidence 33444677888877644
No 391
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.86 E-value=1.1e+02 Score=31.21 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEH 753 (1113)
Q Consensus 740 SVEEIDarIkrLE~ 753 (1113)
.+.-|+.+|.+||+
T Consensus 111 ~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 111 MVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhc
Confidence 34445555555554
No 392
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.76 E-value=1.5e+02 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNke 875 (1113)
..+..|..+.+.+-.....||..+..|+.+....-+.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555666666666665554443
No 393
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.71 E-value=1.3e+02 Score=36.61 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 843 RLLGQFKAADEIRQEAY 859 (1113)
Q Consensus 843 ELQEELkALdEkRDEAY 859 (1113)
.|+++...++.+.+.+.
T Consensus 91 ~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 91 RLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 34444444444444443
No 394
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.28 E-value=1.5e+02 Score=35.43 Aligned_cols=18 Identities=0% Similarity=-0.097 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001257 853 EIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 853 EkRDEAYEeLkeLRKERD 870 (1113)
+++.+++..+..|..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 138 SEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 395
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.20 E-value=44 Score=39.97 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR--AS--YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakR--AE--RdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
+..+.-.+..+++.++.+|+.+..++.... .. ...|+++++.|..+++.+...+.+...+++.+...+
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 445555556666666666666666665321 12 355666666666666666666666655555544443
No 396
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=54.95 E-value=1.7e+02 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHH
Q 001257 898 LQHLCVNQVERVLELWNNNDEFRKEY 923 (1113)
Q Consensus 898 LeelC~~EVEkFMelWNnDkeFRkDY 923 (1113)
...|...|+..||.......++|.-|
T Consensus 60 ~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 60 PKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred chhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 44566899999999999998888755
No 397
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.90 E-value=2.6e+02 Score=35.84 Aligned_cols=9 Identities=56% Similarity=1.043 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 001257 767 QIIREIKQL 775 (1113)
Q Consensus 767 KLLKEIKQL 775 (1113)
++|++++++
T Consensus 588 ~~i~~lk~~ 596 (782)
T PRK00409 588 EIIKELRQL 596 (782)
T ss_pred HHHHHHHHh
Confidence 344444443
No 398
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.88 E-value=5.2e+02 Score=32.37 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001257 860 KHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 860 EeLkeLRKERDEkNkeFYqnRR~irKAR 887 (1113)
.++..|.++.......|.+.-..+.+.|
T Consensus 342 ~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 342 ESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333
No 399
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=54.51 E-value=5e+02 Score=32.02 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH-HHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRR-EQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR 817 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqR-KkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELR 817 (1113)
+-+.+|++.|..|+...++.-..+-++|.-+.=+..+-... +-. +....+.-+..--+....+-+|....-||..++
T Consensus 337 s~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~--~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~ 414 (554)
T KOG4677|consen 337 SQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECF--YHETEAEGTFSSRVNLKKQSKIPDKQYELTKLA 414 (554)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHH--HHHHHHhhhhhhhccchhhccCcchHHHHHHHH
Confidence 35566677777777766666666666666554443332221 100 000000001111122233333443344444444
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH---------HHH
Q 001257 818 ENVI--KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD---------KNQ---------HFW 877 (1113)
Q Consensus 818 kKLk--kLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE---------kNk---------eFY 877 (1113)
+.+. ......+++....+.+..-+-..|-.+..+....+.....+..|.+.-.- .|. ..|
T Consensus 415 ~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~v~~l~ 494 (554)
T KOG4677|consen 415 ARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDVVIDLY 494 (554)
T ss_pred HHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhccccccceeeccCCCcccccccchHh
Confidence 4322 12223455555555555555555556666666666666666666654330 011 344
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 001257 878 KYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVN 925 (1113)
Q Consensus 878 qnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeK 925 (1113)
..-.++.+.|..+..=|... .+.+.|..+.-.-+=|=..|+-
T Consensus 495 ~d~~~~~q~r~a~s~VD~~s------~~l~~~lr~~psArif~~~Yma 536 (554)
T KOG4677|consen 495 RDLKDRQQLRAARSKVDKGS------AELEKILRLLPSARIFWKNYMA 536 (554)
T ss_pred hhhhhhHHHHHHHhhcchhh------HHHHHHHhcCchhHHHHHHHHH
Confidence 44444445554444444333 4567777777777777777774
No 400
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.21 E-value=3.2e+02 Score=29.77 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhhhhHhh
Q 001257 902 CVNQVERVLELWNNNDEFRKEYVNSNIRSTLR 933 (1113)
Q Consensus 902 C~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~r 933 (1113)
+..+|..+...+-.-.+-|=++.|.+++....
T Consensus 180 ~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~ 211 (261)
T cd07648 180 FETKMTDSCKRFQEIEESHLRQMKEFLASYAE 211 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555567788888887777554
No 401
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=53.89 E-value=1.9e+02 Score=27.02 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001257 863 QSLKKQAYDKNQHFWKYKD 881 (1113)
Q Consensus 863 keLRKERDEkNkeFYqnRR 881 (1113)
..|...+......|...++
T Consensus 92 ~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 92 EKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 402
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=53.51 E-value=3.3e+02 Score=29.71 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 818 kKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
.+|.+++.++......|+.+++. |.++|-.+...|...|..+-
T Consensus 144 ~kL~kae~el~~a~~~Ye~lN~~---Lk~ELP~l~~~r~~~l~~~f 186 (224)
T cd07591 144 TKLPRAEKELDEAKEVYETLNDQ---LKTELPQLVDLRIPYLDPSF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Confidence 55666777777777778887766 77788888887777776653
No 403
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=53.32 E-value=50 Score=39.49 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001257 904 NQVERVL 910 (1113)
Q Consensus 904 ~EVEkFM 910 (1113)
.+|..|+
T Consensus 147 ~~v~sfl 153 (429)
T PRK00247 147 EEVESFL 153 (429)
T ss_pred HHHHHHH
Confidence 3444444
No 404
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.50 E-value=4.2e+02 Score=30.56 Aligned_cols=52 Identities=6% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRD----DIQTIRASYKEYAEKLEAAISDERSARE 716 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAIna----ELkakRAERdELiEQLKeLReE~KqlRe 716 (1113)
++-...+.+.++.+....-.+|-+ +|+.+..+-..|......|+-++..++.
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Ke 80 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKE 80 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666554444433 3333444444444444444444433333
No 405
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=52.47 E-value=3e+02 Score=34.44 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhCC----------hHHHHHHHHhhhh-hHhhhhhccCCCcCCCCCCCC
Q 001257 899 QHLCVNQVERVLELWNNN----------DEFRKEYVNSNIR-STLRRLKTLDGRSLGPDEEAP 950 (1113)
Q Consensus 899 eelC~~EVEkFMelWNnD----------keFRkDYeKrnl~-Sl~rRqlT~DGR~lnPDEkPp 950 (1113)
-++++...|-.|.+..|+ ..+=.+||.+|.- --..+..-.|+ +|-++.|.
T Consensus 153 h~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~--l~le~~e~ 213 (575)
T KOG2150|consen 153 HRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDD--LNLEELEA 213 (575)
T ss_pred HHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhc--cCchhhhh
Confidence 345555566666555443 4566677777765 44455555554 34444443
No 406
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.34 E-value=2.1e+02 Score=29.41 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAAD 852 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALd 852 (1113)
.+.+.++..+++..+..+..+++.++
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444333334444444444433333
No 407
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.25 E-value=2.9e+02 Score=28.60 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 001257 856 QEAYKHWQSLKK 867 (1113)
Q Consensus 856 DEAYEeLkeLRK 867 (1113)
...-..+..|+.
T Consensus 155 ~~l~~~i~~l~r 166 (177)
T PF13870_consen 155 EELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 408
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.24 E-value=5.1e+02 Score=31.44 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001257 852 DEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882 (1113)
Q Consensus 852 dEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ 882 (1113)
..+|+.-..+|.+|+.....+...+......
T Consensus 370 ~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 370 EQERNGRLAKLAELNSRLKALEEALDARSEA 400 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655555555443333
No 409
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=52.23 E-value=3.8e+02 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKk 781 (1113)
.-+-+..+|+-++..|.+.+.+.. -|..|++.|..
T Consensus 148 kceam~lKLr~~~~~iL~~TYTpe-------~v~Al~~Ir~~ 182 (238)
T PF14735_consen 148 KCEAMILKLRVLELEILSDTYTPE-------TVPALRKIRDH 182 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHH-------hHHHHHHHHHH
Confidence 445667788999999999988853 36677776654
No 410
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.21 E-value=1.7e+02 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841 (1113)
Q Consensus 807 KaLKKELDELRkKLkkLEeklKALkKK~DEIkaEI 841 (1113)
+.+.+.++.+++.++.++..+..+.++++.+...+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444444444444444444443
No 411
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=51.99 E-value=72 Score=30.77 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (1113)
Q Consensus 674 KEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EK 721 (1113)
.++..++...++|+..|+.+-.+.+.|..+|+.|.+-.++.|..+.+.
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777788888888888888889999988888777777654443
No 412
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=51.94 E-value=86 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcC---CCChHHH-HHHHHHHHHHHHHHH
Q 001257 745 DGSIRNMEHRIAHE---TLPLKEE-KQIIREIKQLKQRRE 780 (1113)
Q Consensus 745 DarIkrLE~RIQTg---SLSLvEE-KKLLKEIKQLKKqRK 780 (1113)
+.+|.+||..+..+ ...+.+| +.+..||+-|+.+.+
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVE 41 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 45788898887433 3345566 889999999998865
No 413
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=51.82 E-value=3.9e+02 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCC-------CChHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHET-------LPLKEEKQIIRE 771 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgS-------LSLvEEKKLLKE 771 (1113)
..+..|...|.+++|.-.... ++|.+=+.+|++
T Consensus 152 pel~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~ 191 (335)
T PF08429_consen 152 PELDQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDE 191 (335)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHh
Confidence 477777888888887644332 566555555543
No 414
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.81 E-value=4.6e+02 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 830 VKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 830 LkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
|..++..|..-+..|+.++..+....+.++.....|-....-++...|
T Consensus 322 L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 322 LIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666666666666666666666666666666555555
No 415
>PHA01750 hypothetical protein
Probab=51.64 E-value=73 Score=29.89 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 001257 810 RKEADSLREN 819 (1113)
Q Consensus 810 KKELDELRkK 819 (1113)
++|++.|+.+
T Consensus 41 ~~ELdNL~~e 50 (75)
T PHA01750 41 NSELDNLKTE 50 (75)
T ss_pred HHHHHHHHHH
Confidence 4445544444
No 416
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.53 E-value=5.5e+02 Score=31.60 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q 001257 892 KGDREALQHLCVNQVERVLEL 912 (1113)
Q Consensus 892 kgdveELeelC~~EVEkFMel 912 (1113)
+|+.+-=-.+---+.++.++.
T Consensus 196 kgd~K~rG~WGE~qLerILE~ 216 (475)
T PRK10361 196 KGDNKTQGNWGEVVLTRVLEA 216 (475)
T ss_pred cCCCCcCcchHHHHHHHHHHH
Confidence 344333333334445555543
No 417
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.48 E-value=1.5e+02 Score=28.18 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001257 810 RKEADSLRE 818 (1113)
Q Consensus 810 KKELDELRk 818 (1113)
.-|+++|+.
T Consensus 24 QmEieELKE 32 (79)
T COG3074 24 QMEIEELKE 32 (79)
T ss_pred HHHHHHHHH
Confidence 333333333
No 418
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=51.04 E-value=2.7e+02 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAY 859 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALdEkRDEAY 859 (1113)
+.....+|+.++.. +..++..+...+...+
T Consensus 170 l~~a~~~f~~~~~~---l~~~l~~l~~~~~~~l 199 (229)
T PF03114_consen 170 LEEAKEEFEALNEE---LKEELPKLFAKRQDIL 199 (229)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33444444444444 4445555555555444
No 419
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.89 E-value=2.1e+02 Score=26.50 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 001257 768 IIREIKQLKQRRE 780 (1113)
Q Consensus 768 LLKEIKQLKKqRK 780 (1113)
++.++..|+....
T Consensus 3 ~~~~~~~l~~~l~ 15 (106)
T PF01920_consen 3 LQNKFQELNQQLQ 15 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 420
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.75 E-value=2.5e+02 Score=30.86 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1113)
Q Consensus 824 EeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkN 873 (1113)
++..++|.++++.++..+..|+.++-.+..--..+|..+..+++...+.-
T Consensus 115 Eer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaa 164 (203)
T KOG3433|consen 115 EERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAA 164 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 33334555555555555555555555555556666777777666654433
No 421
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=50.42 E-value=4.7e+02 Score=30.50 Aligned_cols=47 Identities=9% Similarity=0.243 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeL 707 (1113)
++..|..+|.+++..+.+.+.....|+.+++++..++.-+..+++..
T Consensus 132 n~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~y 178 (308)
T PF06717_consen 132 NDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRY 178 (308)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778889999999998888888888888888888888777777654
No 422
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=50.39 E-value=3.7e+02 Score=29.31 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001257 766 KQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViA 784 (1113)
+.+|.++..|+..|..+..
T Consensus 147 ~~ll~~l~~l~~eR~~~~~ 165 (296)
T PF13949_consen 147 RELLNKLEELKKEREELLE 165 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888888876533
No 423
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.08 E-value=1.4e+02 Score=31.15 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY-------AEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAInaELkakRAERdEL-------iEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+.+.+++-+++...+-..|+.+|-+++.+.+.| ..++++|..+...+|..+.+++-++
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555554444444433 2334444444444444444444333
No 424
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.79 E-value=2.5e+02 Score=27.22 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001257 768 IIREIKQLKQR 778 (1113)
Q Consensus 768 LLKEIKQLKKq 778 (1113)
++.+.++|+..
T Consensus 8 ~~~~~q~~q~~ 18 (110)
T TIGR02338 8 QLAQLQQLQQQ 18 (110)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 425
>PLN02939 transferase, transferring glycosyl groups
Probab=49.66 E-value=7.9e+02 Score=32.87 Aligned_cols=15 Identities=20% Similarity=0.829 Sum_probs=12.0
Q ss_pred HHhCChHHHHHHHHh
Q 001257 912 LWNNNDEFRKEYVNS 926 (1113)
Q Consensus 912 lWNnDkeFRkDYeKr 926 (1113)
-|..+...++-|..+
T Consensus 444 ~~~~~~~~~~~~~~~ 458 (977)
T PLN02939 444 VWKRDGRIREAYLSC 458 (977)
T ss_pred HHhhhhhHHHHHHHH
Confidence 488888888888764
No 426
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=49.46 E-value=5.5 Score=48.39 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 700 LiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
|...+..|+.++..++....+.++++..|+..+..+.
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~ 118 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLC 118 (619)
T ss_dssp -------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666777777777777777777777776655443
No 427
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=49.37 E-value=1.3e+02 Score=32.24 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhC
Q 001257 1088 AQTRAALRAQKEAEQKEKVRRLK 1110 (1113)
Q Consensus 1088 ~a~~A~~ra~KEAEkKeKErEKK 1110 (1113)
....|.++|+-+|++.-+++|+.
T Consensus 111 Qkeeae~ka~EeAek~r~ErE~~ 133 (171)
T PF05672_consen 111 QKEEAEAKAREEAEKQRKERERI 133 (171)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999988888764
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.29 E-value=3.5e+02 Score=34.69 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=7.8
Q ss_pred ccccccCCCC-CCCccc
Q 001257 596 RGIQLTGGED-GDRTFQ 611 (1113)
Q Consensus 596 ~~~~~~~~~~-~~~~~~ 611 (1113)
+.+-|||-.. |--||-
T Consensus 323 ~~liItGpNg~GKSTlL 339 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTL 339 (771)
T ss_pred eEEEEECCCCCCchHHH
Confidence 4556666443 333443
No 429
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.14 E-value=5.9e+02 Score=31.27 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=7.3
Q ss_pred HhhhhhHhhhhh
Q 001257 925 NSNIRSTLRRLK 936 (1113)
Q Consensus 925 Krnl~Sl~rRql 936 (1113)
++|+.+...|+.
T Consensus 185 ~~i~~~aiqr~a 196 (514)
T TIGR03319 185 KEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHhcc
Confidence 556666666654
No 430
>PTZ00464 SNF-7-like protein; Provisional
Probab=48.96 E-value=4e+02 Score=29.27 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEK 679 (1113)
Q Consensus 665 LKAKIdeLqKEIeEL 679 (1113)
+...|..++..+..+
T Consensus 16 ~~d~~~~l~~r~~~l 30 (211)
T PTZ00464 16 LEDASKRIGGRSEVV 30 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 431
>PLN02316 synthase/transferase
Probab=48.63 E-value=36 Score=44.50 Aligned_cols=27 Identities=44% Similarity=0.465 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 1075 QEALERKKRIAEKAQTRAALRAQKEAEQ 1102 (1113)
Q Consensus 1075 k~a~eRKkk~aeK~a~~A~~ra~KEAEk 1102 (1113)
+++++..++++||||.+ |-|+|..||-
T Consensus 270 ~~~ee~~r~~~~kaa~~-a~~a~akae~ 296 (1036)
T PLN02316 270 RQAEEQRRREEEKAAME-ADRAQAKAEV 296 (1036)
T ss_pred HHHHHHHHHHHHhhhhh-hhhhhhhHHH
Confidence 33344444444554444 5555555553
No 432
>PF15294 Leu_zip: Leucine zipper
Probab=48.31 E-value=4.9e+02 Score=30.06 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcCCC------------ChHHH---HHHHHHHHHHHHHHHHhhhc-ccchhHHHHHhhhHHHHHHHH
Q 001257 743 DIDGSIRNMEHRIAHETL------------PLKEE---KQIIREIKQLKQRREQISSS-IGEHDEVQLAFDQKDQIEEKM 806 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgSL------------SLvEE---KKLLKEIKQLKKqRKkViAn-aa~rAkIQESidQKEaIqEQI 806 (1113)
++-.+|+++|...-+.+. ||.+. --+-+||..|+..-..+..- ..........++++..|+.+|
T Consensus 90 eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L 169 (278)
T PF15294_consen 90 ELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL 169 (278)
T ss_pred HHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777663 33333 12567777777554433221 111122233456677777777
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 001257 807 KFLRKEADSLRE---------NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN---Q 874 (1113)
Q Consensus 807 KaLKKELDELRk---------KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkN---k 874 (1113)
+.|+......+. .+.+++.++.+++..++. .+.......+++...-..+...+-.++.++...- .
T Consensus 170 ~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek---~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe 246 (278)
T PF15294_consen 170 KELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK---ALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELE 246 (278)
T ss_pred HHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH
Confidence 777764443333 122344444444322222 2233334444444444444444444444433221 1
Q ss_pred HHHHhHHHHHHHHHHHhcC
Q 001257 875 HFWKYKDDTKQANDLASKG 893 (1113)
Q Consensus 875 eFYqnRR~irKARELAakg 893 (1113)
..|+.....+..+++..++
T Consensus 247 kKfqqT~ay~NMk~~ltkK 265 (278)
T PF15294_consen 247 KKFQQTAAYRNMKEILTKK 265 (278)
T ss_pred HHhCccHHHHHhHHHHHhc
Confidence 3445566667777766655
No 433
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.21 E-value=94 Score=36.57 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRR 779 (1113)
Q Consensus 766 KKLLKEIKQLKKqR 779 (1113)
..+.+++++|+...
T Consensus 330 ~~l~~~~~~l~~~~ 343 (451)
T PF03961_consen 330 PELKEKLEELEEEL 343 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 434
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.94 E-value=63 Score=39.20 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 001257 856 QEAYKHWQSLKKQ 868 (1113)
Q Consensus 856 DEAYEeLkeLRKE 868 (1113)
++.=.++..|+.+
T Consensus 107 keLEaE~~~Lk~Q 119 (475)
T PRK13729 107 EKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 435
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.73 E-value=20 Score=38.91 Aligned_cols=39 Identities=8% Similarity=0.461 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCCh
Q 001257 722 RQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPL 762 (1113)
Q Consensus 722 IKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSL 762 (1113)
..++-.+...|...+ ..++.+..+++.|+.++...+++|
T Consensus 161 ~~d~l~ie~~L~~v~--~eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 161 VEDLLEIERELSRVR--SEIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhceEEEEE
Confidence 444445555555554 366677778888899988888654
No 436
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.66 E-value=5.1e+02 Score=30.11 Aligned_cols=169 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 773 KQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD 852 (1113)
Q Consensus 773 KQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd 852 (1113)
++-++.|+..+.|+...+++.+.+..-..++ |+..+..++..|......+..+.++++.++..|..++..+..-.
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~q-----l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQ-----LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH----H---HHHHHHHHHhCCh
Q 001257 853 EIRQEAYKH--------WQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCV----N---QVERVLELWNNND 917 (1113)
Q Consensus 853 EkRDEAYEe--------LkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~----~---EVEkFMelWNnDk 917 (1113)
.--+..... ...|.+..+++...=++.-....++... +.-+..+.+... . |..+...-|..-.
T Consensus 116 ~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~--q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~~ 193 (301)
T PF06120_consen 116 ITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASET--QATLNDLTEQRIDLIRQKAAEQAGAYNSLKGMN 193 (301)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHhhhhhHhhhhhccCCCcCCCCCCCCccC
Q 001257 918 EFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIR 953 (1113)
Q Consensus 918 eFRkDYeKrnl~Sl~rRqlT~DGR~lnPDEkPpvip 953 (1113)
.+=.+|-+ +-.+..+++.-. .++--.||.||
T Consensus 194 g~~~ef~~--l~~l~n~~~~~~---q~l~~~p~~ip 224 (301)
T PF06120_consen 194 GAHAEFNR--LMGLGNQLLAAR---QGLANSPPRIP 224 (301)
T ss_pred ccHHHHHH--HHHHHHHHHHhh---cccccCCCCCC
No 437
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=47.57 E-value=73 Score=29.57 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
++++|+++++++..+.-...-.+.++.+++..=..++-.+-.+==.+|..|..+|+++...
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555445555555566666666666777777777778888888888877654
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.44 E-value=2.7e+02 Score=35.69 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE 710 (1113)
.+..-|..|..+..++.+++..+...+......+.+|..+.+.+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444333
No 439
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.34 E-value=2.7e+02 Score=26.78 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTR---SRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQ---kRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
.|..+|+.|+.-|..... .++.+..+++.+...|..|-.+|.........+...-.+-...+
T Consensus 12 rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466777777776665443 45677777777888888888888777666555444333333333
No 440
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=47.05 E-value=50 Score=40.08 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHH
Q 001257 890 ASKGDREALQHLCVNQVERVLE 911 (1113)
Q Consensus 890 AakgdveELeelC~~EVEkFMe 911 (1113)
.++|+..-...-|..-|=++++
T Consensus 116 v~R~~~~~~~~~Y~~~v~~~l~ 137 (489)
T PF05262_consen 116 VYRGDLDYFKKKYKNVVIKNLT 137 (489)
T ss_pred HHcCCHHHHHHHhhHHHHhhcC
Confidence 3466666666666666655544
No 441
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=46.83 E-value=2.4e+02 Score=26.11 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 789 HDEVQLAFDQKDQIEEKMKFLRKEADSLRE--NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858 (1113)
Q Consensus 789 rAkIQESidQKEaIqEQIKaLKKELDELRk--KLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEA 858 (1113)
.+.+++....+..+..+|..+..++..+.. .+.++-.... ...|+..++.++..+.+.++.+..+-.+.
T Consensus 20 ~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 20 DQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 442
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=46.83 E-value=3.9e+02 Score=28.52 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHh
Q 001257 740 SVDDIDGSIRNMEHRI 755 (1113)
Q Consensus 740 SVEEIDarIkrLE~RI 755 (1113)
.++-|++||..||+++
T Consensus 6 ~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 6 ALDILEKRIEELERRV 21 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667888888888888
No 443
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.82 E-value=1.8e+02 Score=34.06 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhh
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--------RSARESLKSKRQEIDSVQSRINM 734 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~--------KqlReel~EKIKEIdsLQsaL~K 734 (1113)
|..-|+-+-..+..+...-..+..+-..++.+.+.+..+|+.+.... ..+...+++|...|+.|+..|..
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44445444444444444333344444445555555556665554433 34444566666666666655443
No 444
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.70 E-value=5.9e+02 Score=30.57 Aligned_cols=222 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHHHhhc
Q 001257 681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK---NAISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 681 QkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR---NAKSVEEIDarIkrLE~RIQT 757 (1113)
+.|+.++..|+-.+-+--=+.++...+ .++.-+-..+..+.-|...+..-+ +.-|.=+|=..+-.-...+|.
T Consensus 29 eARd~VIdaLKraqhkd~fiE~kYGK~-----NinDP~~ALqRDf~~l~Ek~D~EK~p~ct~spl~iL~~mM~qcKnmQe 103 (561)
T KOG1103|consen 29 EARDDVIDALKRAQHKDLFIEAKYGKL-----NINDPFAALQRDFAILGEKIDEEKIPQCTESPLDILDKMMAQCKNMQE 103 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc-----ccCChHHHHHHHHHHHhccccccccceeccChhHHHHHHHHHHHHHHH
Q ss_pred CCCCh--HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 758 ETLPL--KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFD-QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (1113)
Q Consensus 758 gSLSL--vEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESid-QKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~ 834 (1113)
.-++| .-||+--+=|+.|+.-|..-..+++.-+.+...+. +++.++.+|..-+.+........++++-++.+-.++.
T Consensus 104 ~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 104 NAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Q 001257 835 REESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWN 914 (1113)
Q Consensus 835 DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWN 914 (1113)
..|.-= |.-+ +.++..+.-+++....+.+-...+-..-..+-.+-++....+.|| ..+|||+.++.+.
T Consensus 184 eqis~m---LilE-------cKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglq--teaqvek~i~Efd 251 (561)
T KOG1103|consen 184 EQISLM---LILE-------CKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQ--TEAQVEKLIEEFD 251 (561)
T ss_pred HHHHHH---HHHH-------HHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccc--hHHHHHHHHHHHH
Q ss_pred CChHH
Q 001257 915 NNDEF 919 (1113)
Q Consensus 915 nDkeF 919 (1113)
-..+|
T Consensus 252 iEre~ 256 (561)
T KOG1103|consen 252 IEREF 256 (561)
T ss_pred HHHHH
No 445
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=46.54 E-value=6.7e+02 Score=31.41 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA--------ADEIRQEAYKHWQSL 865 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkA--------LdEkRDEAYEeLkeL 865 (1113)
-+.+-.+++.+...|+.++..++ .++...-++++.+-.+|..|.+++.. |.++||.+..+|.+|
T Consensus 136 A~~La~~f~~~~~~L~~~~~~~n---~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~ 207 (624)
T PRK12714 136 GNSLATRFKQLNGQMDSLSNEVN---SGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGY 207 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 34444556666666666555432 23444454555555555555555533 445555555555443
No 446
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=46.48 E-value=1.4e+02 Score=28.11 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAAD-----EIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALd-----EkRDEAYEeLkeLRKERDEkNkeFYqn 879 (1113)
++++.+.+..++-++.+|+..++.++ .+|...-.+|..|-+....+....|..
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333 456666666776666666666655543
No 447
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=46.26 E-value=4.2e+02 Score=28.76 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--cchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001257 766 KQIIREIKQLKQRREQISSSI--GEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK-LK 842 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAna--a~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE-Id 842 (1113)
....+.|..|++.-..+-.-+ ........-...-+.+...+..=.+.+...+..|......++.+.+-++.|.++ +.
T Consensus 35 ~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~k 114 (204)
T PF10368_consen 35 KEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEKLK 114 (204)
T ss_dssp HHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhCChHHH
Q 001257 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTK-QANDLASKG-DREALQHLCVNQVERVLELWNNNDEFR 920 (1113)
Q Consensus 843 ELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ir-KARELAakg-dveELeelC~~EVEkFMelWNnDkeFR 920 (1113)
+..+++..+...|-++|..+-.-+...=..-+.||.+-..-. ...+|..+- .+.....-...+.+.|-..-+.=-.-+
T Consensus 115 ~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K 194 (204)
T PF10368_consen 115 KQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEK 194 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 001257 921 KEYVN 925 (1113)
Q Consensus 921 kDYeK 925 (1113)
.+|++
T Consensus 195 ~~~y~ 199 (204)
T PF10368_consen 195 QDFYK 199 (204)
T ss_dssp HHH--
T ss_pred HHHHh
No 448
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=46.20 E-value=5.4e+02 Score=29.99 Aligned_cols=144 Identities=8% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1113)
Q Consensus 767 KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQE 846 (1113)
++-.+|+.++-..-. ..-++.+-.+..+-.....++..+++.+++.....+++.... .........
T Consensus 5 ~~~~q~a~~~lk~~~--------~~~qk~l~~~~~l~~~~~k~~~~~e~~~~k~~~~~~~~~~~~------~~~~~~~~~ 70 (332)
T TIGR01541 5 LLTQQIADRKLKKLN--------TADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEAT------ASIRAQNKR 70 (332)
T ss_pred HHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHH
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 001257 847 QFKAAD--EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYV 924 (1113)
Q Consensus 847 ELkALd--EkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYe 924 (1113)
++..+- .+..+-|..+..++..+.+....+-+........-+=.++.....|+.....++......|..-+..|.+|+
T Consensus 71 ~la~~G~g~~~~~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw~ 150 (332)
T TIGR01541 71 QLDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYAAEDALQGDWL 150 (332)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 449
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=46.14 E-value=4.2e+02 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=20.7
Q ss_pred cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 785 SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 785 naa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLE 824 (1113)
|....+-+...+.++..+-.....+...+...|.++.++.
T Consensus 104 Y~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~ 143 (224)
T cd07623 104 YIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLE 143 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544444455555666666666655554
No 450
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=46.11 E-value=62 Score=40.44 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=5.7
Q ss_pred hcCCCChHHHHHHHHHHH
Q 001257 756 AHETLPLKEEKQIIREIK 773 (1113)
Q Consensus 756 QTgSLSLvEEKKLLKEIK 773 (1113)
-.|+++...-.++-+.+.
T Consensus 146 ~~G~I~~~~~~~f~~~l~ 163 (759)
T PF01496_consen 146 IAGVIPREKIESFERILW 163 (759)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred EEEEEehhhHHHHHHHHH
Confidence 356666555444444443
No 451
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=46.09 E-value=3.6e+02 Score=30.65 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYK----HWQSLKKQAYDKNQ 874 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYE----eLkeLRKERDEkNk 874 (1113)
+.+-.+|+.+...|+.++..++ .+++..-++ |+.|.+++..|+.++..+.. .-..|+++||..-+
T Consensus 137 ~~l~~~~n~~~~~L~~~~~~~~---~~i~~~V~~-------iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~ 205 (322)
T TIGR02492 137 QALANSFNQTSNELQDLRKGIN---AEIKSAVTE-------INSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLK 205 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHH
Confidence 3444566666666666665422 233444433 44444444444444443322 45678888887544
No 452
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.69 E-value=1.6e+02 Score=34.41 Aligned_cols=52 Identities=13% Similarity=0.351 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 685 AInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
.+..+-+.+....+.|..++.++..-++..-..+..+++.+..|...|.+.+
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555556666777777777777777777777788888887777664
No 453
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.54 E-value=3.2e+02 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKA 850 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkA 850 (1113)
.+.++++-+..+|..|.++...
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~ 96 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKK 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333
No 454
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=45.54 E-value=1.3e+03 Score=34.14 Aligned_cols=240 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHhhc
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE--SLKSKRQEIDSVQS----RINMM 735 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlRe--el~EKIKEIdsLQs----aL~KL 735 (1113)
......+|..++..|..+.+.-+....+|..++..-..|...++..+.+++.--. ......++|+..+. .++++
T Consensus 1106 N~k~~~eI~kik~~i~~l~~~ID~~i~kl~~ikkks~~~~~e~~~~~~~~ek~~~kt~~n~~~k~Iek~~~~~~~ki~~~ 1185 (2757)
T TIGR01612 1106 NIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKK 1185 (2757)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcchhhhhcchhhcccCHHHHHHHHhhhhhhhHHH
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001257 736 KNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADS 815 (1113)
Q Consensus 736 RNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDE 815 (1113)
+ .--++|..-...|+. ..++|-.+.++++.+=+..+ .-.--...+|.+....-+.+.+.|...++++|.
T Consensus 1186 k--~IYe~m~kl~~El~e--------ie~~k~s~e~V~~i~l~Y~r-~li~~fl~~I~eEk~Ka~~~ie~ie~y~~~iD~ 1254 (2757)
T TIGR01612 1186 K--NIYDEIKKLLNEIAE--------IEKDKTSLEEVKGINLSYGK-NLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDE 1254 (2757)
T ss_pred H--HHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 816 LRENVIK---------------------------AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 816 LRkKLkk---------------------------LEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
++++... .....+.-.+.+.++...-..+.+..... ...+..=..++.--..
T Consensus 1255 Ikkks~e~~~~~~~~~~~~~e~~~~ni~~~~~~~~~~~ak~~~~~I~~i~ekS~kl~~~~s~~-s~i~~IKk~lq~nlq~ 1333 (2757)
T TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEE-SDINDIKKELQKNLLD 1333 (2757)
T ss_pred HHhcCchhhhhhhhhhhhHHHHHHhccccchhHHHHHHHHhhHHHHHHHHHhhHHhhhhhcch-hhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHh
Q 001257 869 AYDKNQHFWKYKDDTKQANDLASKGD----REALQHLCVNQVERVLELWN 914 (1113)
Q Consensus 869 RDEkNkeFYqnRR~irKARELAakgd----veELeelC~~EVEkFMelWN 914 (1113)
....+...-+++..+.-..+|.-... .+++..+... .++|-.+.+
T Consensus 1334 a~~~nn~I~~~L~~Ikn~~~iL~snn~~~Ii~~IkkyT~e-~e~~~k~~k 1382 (2757)
T TIGR01612 1334 AQKHNSDINLYLNEIANIYNILKLNKIKKIIDEVKEYTKE-IEENNKNIK 1382 (2757)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHH
No 455
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.23 E-value=2.1e+02 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 822 KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 822 kLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
.+++++..+...+.+++..+.+|.++-.+|.-+-+.+++.+..+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 456
>PLN03086 PRLI-interacting factor K; Provisional
Probab=45.02 E-value=99 Score=38.33 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001257 1060 AKLREQRRLEEKA 1072 (1113)
Q Consensus 1060 ak~kE~kr~ee~~ 1072 (1113)
.+.+.+.|++.-+
T Consensus 19 ~~~~~~~~~~~~~ 31 (567)
T PLN03086 19 RKQRAKLKLERER 31 (567)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 457
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=3e+02 Score=28.16 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI-----------------------------RASYKEYAEKL 704 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkak-----------------------------RAERdELiEQL 704 (1113)
+..+| |...+.-++..+|+.++..+...|..+-..|+.. -.-.++|..++
T Consensus 1 ~~~lp-p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~ 79 (119)
T COG1382 1 MEQLP-PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERK 79 (119)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 705 EAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 705 KeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
.-|.-+.+.+...-.....+++.|++.|.++
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.77 E-value=1.5e+02 Score=30.27 Aligned_cols=73 Identities=11% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR--ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakR--AERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
...++.-+.|++.+.++++....+...+..++ ...+=|..+.+.|..+++.++..++..+.+-......+.++
T Consensus 48 ~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i 122 (126)
T PF09403_consen 48 NEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKI 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=44.72 E-value=2.8e+02 Score=26.30 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001257 866 KKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVE 907 (1113)
Q Consensus 866 RKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVE 907 (1113)
+...++....|-.|+....++-+++..|+..+...+...++.
T Consensus 108 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 108 KQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 445555666777778888889999999999888888877764
No 460
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.52 E-value=1.8e+02 Score=28.39 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH------
Q 001257 704 LEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ------ 777 (1113)
Q Consensus 704 LKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKK------ 777 (1113)
+..|...++.++..+....+++..|+..+..+. .++.-|+.|..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~------------------------------~~~~~l~~l~~~~~~~~ 50 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYE------------------------------QAKETLETLKKADEGKE 50 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHhcCCCCCe
Q ss_pred ------------------HHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 778 ------------------RREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESE 839 (1113)
Q Consensus 778 ------------------qRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIka 839 (1113)
.+-.|-=..+-+.+. .+.+-++.+.+.++.|.+.++.+...+..+.+.++.+..
T Consensus 51 ~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~--------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 51 TLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEK--------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred EEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEe--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001257 840 KLKRLL 845 (1113)
Q Consensus 840 EIdELQ 845 (1113)
.+..++
T Consensus 123 ~l~~~~ 128 (129)
T cd00584 123 ELQELQ 128 (129)
T ss_pred HHHHhc
No 461
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=44.45 E-value=1.6e+02 Score=35.47 Aligned_cols=103 Identities=9% Similarity=0.163 Sum_probs=50.6
Q ss_pred ecCCCCChHH----HHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Q 001257 655 VKVPRYDDEN----LREQIKAAQSKVDEKTRS--RDAIR---DDIQTIRASYKEYAEKLEAAISDE---------RSARE 716 (1113)
Q Consensus 655 VKVPRPDDEe----LKAKIdeLqKEIeELKQk--RdAIn---aELkakRAERdELiEQLKeLReE~---------KqlRe 716 (1113)
+++.-|+-+. -++-++..+..|++++.+ ++++. .++.....+..+-+..|-+.+.+. .....
T Consensus 207 l~V~AF~PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~ 286 (434)
T PRK15178 207 LNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQ 286 (434)
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHH
Confidence 5555555332 334455566667766653 33332 233333334444444444443321 12222
Q ss_pred HHHHHHHHHHHHHHHHhhcc-----cCCCHHHHHHHHHHHHHHhhc
Q 001257 717 SLKSKRQEIDSVQSRINMMK-----NAISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 717 el~EKIKEIdsLQsaL~KLR-----NAKSVEEIDarIkrLE~RIQT 757 (1113)
.+.....++-.++..|..++ +...+..|+.+|..|+.+|..
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~ 332 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGE 332 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 33333344444444444332 357888888888888877653
No 462
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=44.38 E-value=3e+02 Score=26.52 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHh
Q 001257 720 SKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI 755 (1113)
Q Consensus 720 EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RI 755 (1113)
..++.|+.+-..+.+|- ..+..||.-+.+||.++
T Consensus 63 ~~l~~Id~Ie~~V~~LE--~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 63 PYLQQIDQIEEQVTELE--QTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 34445555555554443 46777888888888765
No 463
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=44.20 E-value=76 Score=32.85 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHh
Q 001257 759 TLPLKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 759 SLSLvEEKKLLKEIKQLKKqRKkV 782 (1113)
+-...+++++.+||.+|++....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC
Confidence 445677888888888888887654
No 464
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=44.04 E-value=8.4e+02 Score=31.60 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 001257 892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYV 924 (1113)
Q Consensus 892 kgdveELeelC~~EVEkFMelWNnDkeFRkDYe 924 (1113)
.+.+-.|+....+.++.=..+.......+.+..
T Consensus 449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE 481 (786)
T PF05483_consen 449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELE 481 (786)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445666666655555555555555555555544
No 465
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.04 E-value=9.7e+02 Score=32.30 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCCC
Q 001257 869 AYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGR 941 (1113)
Q Consensus 869 RDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DGR 941 (1113)
.+..+..||+.....-+...=-+......+...|.+.-.+|-+..+..+.+=.+|.+-......+-....|+.
T Consensus 716 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~ 788 (1041)
T KOG0243|consen 716 LSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIA 788 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666655543322222344445566677777777777555666777788776666555555555544
No 466
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.92 E-value=2.5e+02 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEE 847 (1113)
+++..++..++..+|..|.++
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333443333333
No 467
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.89 E-value=2.6e+02 Score=32.74 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhH
Q 001257 918 EFRKEYVNSNIRST 931 (1113)
Q Consensus 918 eFRkDYeKrnl~Sl 931 (1113)
.+.+||+|=-+..|
T Consensus 118 ~yKdEYEkFKl~~t 131 (330)
T PF07851_consen 118 KYKDEYEKFKLYLT 131 (330)
T ss_pred chhhhHHHHHHHHH
Confidence 44577776544443
No 468
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.69 E-value=5.1e+02 Score=29.99 Aligned_cols=7 Identities=57% Similarity=0.781 Sum_probs=4.6
Q ss_pred CCcCCCC
Q 001257 940 GRSLGPD 946 (1113)
Q Consensus 940 GR~lnPD 946 (1113)
|-+++||
T Consensus 174 GlVlv~~ 180 (302)
T PF09738_consen 174 GLVLVPD 180 (302)
T ss_pred CeeeCCC
Confidence 5567776
No 469
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.07 E-value=3.5e+02 Score=33.91 Aligned_cols=67 Identities=3% Similarity=0.027 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 001257 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-------AADEIRQEAYKHWQSL 865 (1113)
Q Consensus 796 idQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk-------ALdEkRDEAYEeLkeL 865 (1113)
+.+-+.+-.+++.+...|+.++..++ .++...-.+++.+-.+|..|.+++. .|.++||.+..+|.+|
T Consensus 136 l~~A~~La~~fn~~~~~L~~~~~~vn---~qi~~~V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~ 209 (626)
T PRK08871 136 LEKAKLISQTLNDFHETVRQQKDVTN---KKLDLGVERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQY 209 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 33334555566666666666655433 3344445555555566666665553 4445555555555544
No 470
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=43.01 E-value=4e+02 Score=32.19 Aligned_cols=36 Identities=11% Similarity=-0.107 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001257 854 IRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889 (1113)
Q Consensus 854 kRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAREL 889 (1113)
+.......|..+.+...++..+|=.-+..|.+.-+-
T Consensus 247 qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~ 282 (424)
T PF03915_consen 247 QLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES 282 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 334555666666666666666666666666655443
No 471
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=43.00 E-value=6.2e+02 Score=29.74 Aligned_cols=31 Identities=6% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
.+|...+..+..+|..+...+..+...+..+
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~ 90 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEAL 90 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677778888888888888888887777775
No 472
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.96 E-value=5.7e+02 Score=29.37 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHH---hcCCHHHHHHHH
Q 001257 873 NQHFWKYKDDTKQANDLA---SKGDREALQHLC 902 (1113)
Q Consensus 873 NkeFYqnRR~irKARELA---akgdveELeelC 902 (1113)
...+-.....+.+|.+-. .++++.+|+.|.
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~ 113 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISEIKSYA 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 334444444444444332 234555555543
No 473
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=42.93 E-value=4.6e+02 Score=29.38 Aligned_cols=30 Identities=0% Similarity=0.127 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001257 859 YKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1113)
Q Consensus 859 YEeLkeLRKERDEkNkeFYqnRR~irKARE 888 (1113)
|--+..+|+.+.++...+-..|...+..++
T Consensus 218 HlGy~~IR~~l~el~e~~~~~~~~~R~~~~ 247 (254)
T PF03194_consen 218 HLGYAKIREKLKELKEKREERREKERRRRE 247 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 334444455555555544444444444444
No 474
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.84 E-value=1.9e+02 Score=36.29 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1113)
Q Consensus 767 KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQE 846 (1113)
++|.|+.+.+.+-.. |+-++..+..++...+.++..|+++++..|...|-
T Consensus 79 r~~~e~~RI~~sVs~------------------------------EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~ 128 (907)
T KOG2264|consen 79 RILREQKRILASVSL------------------------------ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL 128 (907)
T ss_pred HHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 847 QFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 847 ELkALdEkRDEAYEeLkeLRKE 868 (1113)
++-+|+.....+-..+.+||.+
T Consensus 129 eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 129 ELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
No 475
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.84 E-value=3.1e+02 Score=26.28 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 001257 769 IREIKQLKQRR 779 (1113)
Q Consensus 769 LKEIKQLKKqR 779 (1113)
+.++++|+...
T Consensus 5 ~~~~q~l~~~~ 15 (105)
T cd00632 5 LAQLQQLQQQL 15 (105)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 476
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=42.82 E-value=3.5e+02 Score=34.35 Aligned_cols=144 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChH--HHHHHHHHHHHHHHHH
Q 001257 709 SDERSARESLKSKRQEI-------DSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLK--EEKQIIREIKQLKQRR 779 (1113)
Q Consensus 709 eE~KqlReel~EKIKEI-------dsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLv--EEKKLLKEIKQLKKqR 779 (1113)
.+...+...+.+..+++ ..-...+..+.+..+...|=..|..+ |++. ++|+-|=|...+....
T Consensus 120 ~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~--------L~l~~~~eKQ~LLE~~d~~~RL 191 (775)
T TIGR00763 120 EEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAAS--------LQLKEKDELQEVLETVNIEKRL 191 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHh--------cCCCcHHHHHHHHhcCCHHHHH
Q ss_pred HHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---H
Q 001257 780 EQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE---ESEKLKRLLGQFKAAD---E 853 (1113)
Q Consensus 780 KkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DE---IkaEIdELQEELkALd---E 853 (1113)
..+..+....-++. .++.+|...-++--.-..+---+++++++|++++.+ ...++.++.++++++. +
T Consensus 192 ~~l~~lL~~ele~l-------~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~ 264 (775)
T TIGR00763 192 KKALELLKKELELL-------KLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEE 264 (775)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHH
Q ss_pred HHHHHHHHHHHHHH
Q 001257 854 IRQEAYKHWQSLKK 867 (1113)
Q Consensus 854 kRDEAYEeLkeLRK 867 (1113)
.++.++.+++.|+.
T Consensus 265 ~~~~~~~e~~~~~~ 278 (775)
T TIGR00763 265 VKKVIEKELTKLSL 278 (775)
T ss_pred HHHHHHHHHHHHHc
No 477
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.74 E-value=2.6e+02 Score=34.22 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQA 869 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk-ALdEkRDEAYEeLkeLRKER 869 (1113)
.+++.++++++.|..+=+.+.++-+.|.++-.. +..+++ ++...|.++-.++..|..++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~-------id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQS-------IDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444445555554444433333333333333333 333333 33344444444444444443
No 478
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.53 E-value=5.9e+02 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
.++....++++.+.++.-+.-.++..|-.++..+++
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555444
No 479
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.46 E-value=4.7e+02 Score=28.26 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 660 YDDENLREQIKAAQSKVD---EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIe---ELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
||...+..+|..|-.--. ++...|..+-.++......+.++-+.+..|..+.-.++........+.....+.+.++.
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCHHHHHHHHHHHHHHhhc
Q 001257 737 NAISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 737 NAKSVEEIDarIkrLE~RIQT 757 (1113)
+....|+..|..++.+-++
T Consensus 166 --s~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 166 --SEAEALKEEIENAELEFQS 184 (190)
T ss_pred --HHHHHHHHHHHHHHHHHHH
No 480
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=42.23 E-value=4.2e+02 Score=27.64 Aligned_cols=19 Identities=42% Similarity=0.462 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001257 764 EEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 764 EEKKLLKEIKQLKKqRKkV 782 (1113)
|||+-.+|+..|......+
T Consensus 31 E~KRgdRE~~~L~~~~~~~ 49 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMI 49 (145)
T ss_pred HHccCcHHHHHHHHHHHHH
Confidence 5788888888888887764
No 481
>PHA01750 hypothetical protein
Probab=42.22 E-value=65 Score=30.20 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLH 834 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~ 834 (1113)
.++..|+.++.+++.+++.++.+++++++++
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555544443
No 482
>smart00030 CLb CLUSTERIN Beta chain.
Probab=41.97 E-value=2.9e+02 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCCC
Q 001257 892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGR 941 (1113)
Q Consensus 892 kgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DGR 941 (1113)
..+.++-+.+|+ +.+|++|- ==|--|.+||+|+-||-=|
T Consensus 70 e~kL~E~~~vCn---etm~alWe--------ECKpCLk~tCmkfYsr~Cr 108 (206)
T smart00030 70 EEKLKESQGVCN---ETMMALWE--------ECKPCLKQTCMKFYARVCR 108 (206)
T ss_pred HHHHHHHHHHHH---HHHHHHHH--------HhHHHHHHHHHHHHHHhcC
Confidence 445677788897 67899992 3355688899998885433
No 483
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=41.96 E-value=2.7e+02 Score=31.83 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 001257 739 ISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQT 757 (1113)
.+.+++.=+|++|.+++.|
T Consensus 9 ~~eed~rL~v~~LhHQvlT 27 (277)
T PF15030_consen 9 ASEEDLRLRVQQLHHQVLT 27 (277)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 5788899999999998876
No 484
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.94 E-value=1.9e+02 Score=28.05 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
+..|+.+.+.+..+++.++...+++.++=.+|..+|+ |-.||..-|-+
T Consensus 33 V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD---------N~~~~~~~~~~ 80 (85)
T PRK09973 33 VQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD---------AQDYFDCLRCL 80 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHH
Confidence 3344444444445555555555555544444444443 55677655443
No 485
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.83 E-value=1.6e+02 Score=35.55 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1113)
Q Consensus 772 IKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkAL 851 (1113)
|+-|+...+.+......+......++..-++..+.+.+..+++.|+.+.+.+-.++....++-.+ ....|..+.+.+
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l 80 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKEL 80 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 852 DEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 852 dEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
.++...+-..+.++..+.+.....|
T Consensus 81 ~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 81 KEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhC
No 486
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=41.78 E-value=3.5e+02 Score=26.58 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------
Q 001257 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG------ 893 (1113)
Q Consensus 820 LkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakg------ 893 (1113)
+.........|...+..++..+..|......+-...+.--.-...|..-.+..+.-+..-+..+...+......
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s 80 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGS 80 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q ss_pred -CHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCCCcCCCC
Q 001257 894 -DREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPD 946 (1113)
Q Consensus 894 -dveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DGR~lnPD 946 (1113)
..+.-+..+..-..+|...++.=-.-..+|..+.....-|+ -++.+||
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq-----~~i~~~~ 129 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ-----LEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCC
No 487
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.68 E-value=2.9e+02 Score=25.59 Aligned_cols=113 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHhhcccCCC
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE-RSARESLKSKRQEID-SVQSRINMMKNAIS 740 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~-KqlReel~EKIKEId-sLQsaL~KLRNAKS 740 (1113)
..+..++..+...+..+......+.......+.+-...+..|..+..+. +.+-..++....+.. .|...+..+. ..
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~--~~ 87 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLT--QK 87 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 001257 741 VDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQ 777 (1113)
Q Consensus 741 VEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKK 777 (1113)
...+...|..+++.+.+++- =|..-+.++..+..|.+
T Consensus 88 l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l~~ 126 (127)
T smart00502 88 QEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNLLK 126 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
No 488
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=41.53 E-value=5e+02 Score=28.23 Aligned_cols=181 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKL--------EAAISDERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQL--------KeLReE~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
+..-.+.+-..-..+...-+.-......|..+-..-.+|..++ ..+.....++-..+..+.+.|+....+|.
T Consensus 13 ~~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~ 92 (204)
T PF10368_consen 13 GKKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIE 92 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH-HhhhcccchhHHHHHhhhHHHHHHHHHHHHHH
Q 001257 734 MMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE-QISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE 812 (1113)
Q Consensus 734 KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRK-kViAnaa~rAkIQESidQKEaIqEQIKaLKKE 812 (1113)
.... +..--+..+.--+.+.+-++..+|....+ .-.++-.......+++.....+=..++.-...
T Consensus 93 ~a~~--------------e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~ 158 (204)
T PF10368_consen 93 KAKE--------------EFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTT 158 (204)
T ss_dssp HHHH--------------HHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--
T ss_pred HHHH--------------HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 813 LDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
++.|..+ ++.|++.|.++........+..+.+++.+...|....
T Consensus 159 ~~~l~~k-------i~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~y~~a~ 202 (204)
T PF10368_consen 159 QKQLDEK-------IKAINQSYKEVNKQKEKFNEYTKKYNEEKQDFYKKAG 202 (204)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 489
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=41.12 E-value=5.1e+02 Score=28.21 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcc
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT----IRASYKEYAEKLEAAISDERSARESLKSKRQEID--SVQSRINMMK 736 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELka----kRAERdELiEQLKeLReE~KqlReel~EKIKEId--sLQsaL~KLR 736 (1113)
+.-++-++.|++....+..+|.++..++.. ......+|...++.+...+..-...+.++.++.+ .++..+..+-
T Consensus 42 k~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~ 121 (215)
T PF07083_consen 42 KDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMA 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -cCC-CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001257 737 -NAI-SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775 (1113)
Q Consensus 737 -NAK-SVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQL 775 (1113)
.+. ....++.. +...--..|+++.. ++.+|..+
T Consensus 122 ~~~~v~~~~fe~~---~~~~wlnks~s~kk---~~eei~~~ 156 (215)
T PF07083_consen 122 EEYGVDPEPFERI---IKPKWLNKSYSLKK---IEEEIDDQ 156 (215)
T ss_pred HHcCCChHHHhhh---cchHHhhcCCcHHH---HHHHHHHH
No 490
>COG5283 Phage-related tail protein [Function unknown]
Probab=40.88 E-value=1.1e+03 Score=32.18 Aligned_cols=200 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHH
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID 745 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEID 745 (1113)
...|..|...|...++.-..+-.+++.-+.--..-..++..|.+-.......+.+..+|+.++...+...+ +...+++
T Consensus 21 ~~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~--kay~e~~ 98 (1213)
T COG5283 21 VKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASK--KAYQEYN 98 (1213)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHhhcCCCChH----------HH-HHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHH
Q 001257 746 GSIRNMEHRIAHETLPLK----------EE-KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD 814 (1113)
Q Consensus 746 arIkrLE~RIQTgSLSLv----------EE-KKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELD 814 (1113)
+++-+.|....+-+-.+. +| .++=.+|+.|.+. |++.+...++-..++......+.
T Consensus 99 ~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~-------------maaQ~~l~eqt~n~~g~a~~~~~ 165 (1213)
T COG5283 99 AQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKS-------------MAAQARLLEQTGNKFGTADAKVV 165 (1213)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhh-------------hHHHHHHHHHhhhHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 001257 815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG 893 (1113)
Q Consensus 815 ELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakg 893 (1113)
.++. -...+...++.+ +..-.+.....+.-+.+....|-.+...++..+-..|..+...+.+-.++
T Consensus 166 gl~e----------sf~~q~~aln~q---~~~t~k~~~~~~~~l~e~qq~~~q~~~a~~~~L~~s~~q~~~s~~qlsk~ 231 (1213)
T COG5283 166 GLRE----------SFGRQTEALNKQ---LERTKKVADALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGKR 231 (1213)
T ss_pred hHhH----------HHHHHHHHHHHH---HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
No 491
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=40.81 E-value=3.4e+02 Score=26.10 Aligned_cols=81 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001257 809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888 (1113)
Q Consensus 809 LKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARE 888 (1113)
|..||..+....+.+...+......+-.+...+..|..+...++.+.-.+....+.|..+....+..+-.++..+.+..+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred H
Q 001257 889 L 889 (1113)
Q Consensus 889 L 889 (1113)
+
T Consensus 81 ~ 81 (96)
T PF08647_consen 81 T 81 (96)
T ss_pred H
No 492
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=40.80 E-value=8.2e+02 Score=30.53 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001257 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773 (1113)
Q Consensus 694 RAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIK 773 (1113)
|..=.-|..|+...-.+...+.. +...|..|.+.+.... |.-+-.-|.
T Consensus 67 R~~d~fl~~q~~~a~s~~s~~~t----~~~~L~~le~ll~~~~----------------------------~~sl~~~L~ 114 (552)
T COG1256 67 RLRDEFLTNQYRNANSQSSYLDT----RASQLSQLESLLSEPS----------------------------ESSLSTLLN 114 (552)
T ss_pred ehHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhCCCc----------------------------cccHHHHHH
Q ss_pred HHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 774 QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADE 853 (1113)
Q Consensus 774 QLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdE 853 (1113)
.+-.....+..+...-+.-+..+..-+.+-.+|+..-..|..+++ .+..++...-++++.+-.+|.+|++++..+
T Consensus 115 ~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~---~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~-- 189 (552)
T COG1256 115 DFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRK---DINAEIAATVDEVNSLLKQIADLNKQIRKV-- 189 (552)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 854 IRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 854 kRDEAYEeLkeLRKERDEkNkeFYqn 879 (1113)
..+-..-+.|+++||.+-+++-++
T Consensus 190 --~~~g~~~NdLlDqRD~Lv~eLs~~ 213 (552)
T COG1256 190 --KAAGNDPNDLLDQRDQLVDELSQL 213 (552)
T ss_pred --ccCCCCchhHHHHHHHHHHHHHhh
No 493
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=40.79 E-value=4.2e+02 Score=31.15 Aligned_cols=100 Identities=10% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK------ 736 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR------ 736 (1113)
+-|++--.++.+.+++.--+-..|+++|..+..+-+.+..+|-+|+..++++...+.+.-..++.+-..+.+++
T Consensus 248 ~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 248 PYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -----cCCCHHHHHHHHHHHHHHhhcCCCCh
Q 001257 737 -----NAISVDDIDGSIRNMEHRIAHETLPL 762 (1113)
Q Consensus 737 -----NAKSVEEIDarIkrLE~RIQTgSLSL 762 (1113)
...++--|...|..|....++..+-+
T Consensus 328 G~~msDGaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 328 GAKMSDGAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHhhhhhe
No 494
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.55 E-value=3.9e+02 Score=33.86 Aligned_cols=91 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001257 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK-- 849 (1113)
Q Consensus 772 IKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk-- 849 (1113)
|..+-.....+..+-...+.-+..+.+-+.+-.+++.+...|+.++. .+..++...-++++.+-.+|..|..++.
T Consensus 109 L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~---~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 109 LQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNS---NINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --------HHHHHHHHHHHHHHHH
Q 001257 850 --------AADEIRQEAYKHWQSL 865 (1113)
Q Consensus 850 --------ALdEkRDEAYEeLkeL 865 (1113)
.|.++||.+..+|.+|
T Consensus 186 ~~~G~~~NdLlDqRD~Ll~eLS~~ 209 (676)
T PRK05683 186 SASGATPNDLLDARDEAVRQLNEL 209 (676)
T ss_pred hcCCCCchHhHHHHHHHHHHHHhh
No 495
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.45 E-value=4.6e+02 Score=31.22 Aligned_cols=113 Identities=9% Similarity=0.166 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS----------- 730 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQs----------- 730 (1113)
+...++++..+.++.+.++..-..|+.-.+++++.+..|-.++-.|.....=+.....+-+..++.+..
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~ 299 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTA 299 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccc
Q ss_pred --HHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001257 731 --RINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQ 774 (1113)
Q Consensus 731 --aL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQ 774 (1113)
.-..+.+.---..|+.-|..|+.-..-|+|.|..==|-++-.++
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHH
No 496
>PRK12704 phosphodiesterase; Provisional
Probab=40.44 E-value=7.9e+02 Score=30.27 Aligned_cols=164 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 770 REIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSL----RENVIKAEAATQAVKKLHREESEKLKRLL 845 (1113)
Q Consensus 770 KEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDEL----RkKLkkLEeklKALkKK~DEIkaEIdELQ 845 (1113)
+.+.+.++.-+.+...+...++-. ....+.+.+.++...+.+++.- +.++...+..+..-...++.-...|....
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eAke~-~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke 109 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAI-KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHH
Q 001257 846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT-----KQANDLASKGDREALQHLCVNQVERVLELWNNNDEFR 920 (1113)
Q Consensus 846 EELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~i-----rKARELAakgdveELeelC~~EVEkFMelWNnDkeFR 920 (1113)
.++..-.+...+.-+.+.+++.+.+++.......-..+ ..||+..-..=..+++.-+..-+-++...-...-
T Consensus 110 ~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a--- 186 (520)
T PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEA--- 186 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHhhhhhHhhhhhc
Q 001257 921 KEYVNSNIRSTLRRLKT 937 (1113)
Q Consensus 921 kDYeKrnl~Sl~rRqlT 937 (1113)
+.+-++|+.+...|+.+
T Consensus 187 ~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 187 DKKAKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHHHHhhcc
No 497
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=40.44 E-value=1.4e+02 Score=34.97 Aligned_cols=68 Identities=37% Similarity=0.369 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 1038 KLTKEEEEMARKAEEKRK----EEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEK 1105 (1113)
Q Consensus 1038 k~~KEeee~~~k~~~~~~----e~~~ak~kE~kr~ee~~Kak~a~eRKkk~aeK~a~~A~~ra~KEAEkKeK 1105 (1113)
++++.|++.+...++..+ .++..+..+.+..++-+|+|-+...-|+.+|..+..|+..+..|++-|.+
T Consensus 145 ~kk~aE~a~aka~aEA~k~Ka~aeAkkkAe~a~kA~eeAkaKAe~a~~k~kaEaEAkaa~ekAk~e~~aka~ 216 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAK 216 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 498
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.44 E-value=3.3e+02 Score=25.91 Aligned_cols=71 Identities=8% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD----EIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALd----EkRDEAYEeLkeLRKERDEk 872 (1113)
+.+-+..++.|++.+-.++..++...+.+..++..--.++..|...+-.+- ..++..=++|..||.++...
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=40.33 E-value=8.8e+02 Score=30.77 Aligned_cols=166 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCHHHHH-HHHHHHHHHhhcCCCChHHHHH-HHHH
Q 001257 697 YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA---ISVDDID-GSIRNMEHRIAHETLPLKEEKQ-IIRE 771 (1113)
Q Consensus 697 RdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNA---KSVEEID-arIkrLE~RIQTgSLSLvEEKK-LLKE 771 (1113)
+-.+--..++...+++-........+.++..+...|...++. ...+++. ..-+.+.-..-...+++.-++- .-.+
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~ 415 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEE 415 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHH
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1113)
Q Consensus 772 IKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkAL 851 (1113)
+..|......+ -.|.++...+|+..-+....|+.++.+.++.+.--...++.+..++..+|+..+.+
T Consensus 416 ~~~~~e~~~~L-------------~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~ 482 (607)
T KOG0240|consen 416 EDILTERIESL-------------YQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAA 482 (607)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 852 DEIRQEAYKHWQSLKKQAYDKNQH 875 (1113)
Q Consensus 852 dEkRDEAYEeLkeLRKERDEkNke 875 (1113)
..+-.+....+.+|+..++.....
T Consensus 483 ~~e~~e~~~al~el~~~~~~~~~~ 506 (607)
T KOG0240|consen 483 KDEVKEVLTALEELAVNYDQKSEE 506 (607)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
No 500
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.24 E-value=7.9e+02 Score=30.21 Aligned_cols=221 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH------------HHH---HHHHHHHHH
Q 001257 656 KVPRYDDENLREQIKAAQSKVDEKTRS---------------RDAIRDDIQTI------------RAS---YKEYAEKLE 705 (1113)
Q Consensus 656 KVPRPDDEeLKAKIdeLqKEIeELKQk---------------RdAInaELkak------------RAE---RdELiEQLK 705 (1113)
|+-+-+.+.++-+-..++.+-..+.++ -+-|..+++++ +.+ -+.|-.+++
T Consensus 60 kvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~ 139 (552)
T KOG2129|consen 60 KVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLK 139 (552)
T ss_pred hhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccc-----CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Q 001257 706 AAISDERSARESLKSKR-QEIDSVQSRINMMKN-----AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRR 779 (1113)
Q Consensus 706 eLReE~KqlReel~EKI-KEIdsLQsaL~KLRN-----AKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqR 779 (1113)
.|+.+.=.+-.-+..-+ =..+.|-..++|+-| ..+.+.|..+.=.||..++.+.=-|+ .+|.+.|.+|+..+
T Consensus 140 qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalv--N~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 140 QLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALV--NSLWKRMDKLEQEK 217 (552)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred H-------HhhhcccchhHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 001257 780 E-------QISSSIGEHDEVQ----LAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES----EKLKRL 844 (1113)
Q Consensus 780 K-------kViAnaa~rAkIQ----ESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIk----aEIdEL 844 (1113)
. +-...-..-..|. -..+.-.....-|..|+.|+.-||+.+..+.....+--.+|-+.. .+...|
T Consensus 218 r~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl 297 (552)
T KOG2129|consen 218 RYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL 297 (552)
T ss_pred HHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 845 LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 845 QEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
|..+..--++|...-..+.+-+.-+...-..||+
T Consensus 298 QrkL~~e~erRealcr~lsEsesslemdeery~N 331 (552)
T KOG2129|consen 298 QRKLINELERREALCRMLSESESSLEMDEERYLN 331 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Done!