Query 001257
Match_columns 1113
No_of_seqs 153 out of 225
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.7 0.00023 7.9E-09 69.0 34.7 71 663-733 2-72 (284)
2 1c1g_A Tropomyosin; contractIl 98.5 0.0011 3.8E-08 64.3 33.6 43 665-707 18-60 (284)
3 3na7_A HP0958; flagellar bioge 98.1 0.00065 2.2E-08 70.9 23.4 84 694-780 24-107 (256)
4 3na7_A HP0958; flagellar bioge 97.8 0.0048 1.6E-07 64.5 23.8 86 670-755 14-106 (256)
5 1i84_S Smooth muscle myosin he 97.6 8.4E-06 2.9E-10 100.4 0.0 49 663-711 916-964 (1184)
6 1i84_S Smooth muscle myosin he 97.6 0.00013 4.3E-09 90.2 9.6 25 472-496 579-603 (1184)
7 2dfs_A Myosin-5A; myosin-V, in 96.1 0.23 8E-06 61.6 20.9 27 471-497 546-572 (1080)
8 3vkg_A Dynein heavy chain, cyt 95.8 2.4 8E-05 58.3 29.6 65 804-868 2021-2085(3245)
9 2dfs_A Myosin-5A; myosin-V, in 95.8 1.1 3.9E-05 55.7 25.0 39 800-838 980-1018(1080)
10 3oja_B Anopheles plasmodium-re 94.9 0.25 8.5E-06 55.6 13.8 27 805-831 531-557 (597)
11 3o0z_A RHO-associated protein 94.3 5.3 0.00018 40.8 21.4 45 801-845 94-138 (168)
12 3vkg_A Dynein heavy chain, cyt 94.3 13 0.00044 51.5 29.6 18 21-38 1016-1035(3245)
13 2jee_A YIIU; FTSZ, septum, coi 92.8 0.6 2.1E-05 42.7 9.6 63 663-725 9-78 (81)
14 3oja_B Anopheles plasmodium-re 92.6 1.6 5.4E-05 49.2 15.0 49 826-874 531-579 (597)
15 3ghg_A Fibrinogen alpha chain; 92.5 0.92 3.2E-05 52.8 12.8 21 804-824 131-151 (562)
16 3u59_A Tropomyosin beta chain; 91.6 3.4 0.00012 38.2 13.3 93 662-756 4-96 (101)
17 3u1c_A Tropomyosin alpha-1 cha 91.6 3.3 0.00011 38.5 13.2 75 800-874 5-79 (101)
18 2v71_A Nuclear distribution pr 91.5 14 0.00049 38.2 23.3 85 805-889 89-173 (189)
19 3u59_A Tropomyosin beta chain; 91.3 3.7 0.00013 37.9 13.2 75 800-874 5-79 (101)
20 2efr_A General control protein 90.6 15 0.00053 36.9 20.4 66 800-865 73-138 (155)
21 2efr_A General control protein 90.2 17 0.00057 36.6 19.1 87 800-886 38-124 (155)
22 3q8t_A Beclin-1; autophagy, AT 89.9 11 0.00037 35.0 14.9 78 763-867 18-95 (96)
23 3u1c_A Tropomyosin alpha-1 cha 89.8 6 0.00021 36.8 13.3 69 662-730 4-72 (101)
24 1ic2_A Tropomyosin alpha chain 89.4 5.3 0.00018 35.6 12.1 71 801-871 3-73 (81)
25 3hnw_A Uncharacterized protein 89.3 2.3 8E-05 41.7 10.6 47 801-847 79-125 (138)
26 2xs1_A Programmed cell death 6 89.2 42 0.0014 39.9 26.8 112 766-878 559-684 (704)
27 2nrj_A HBL B protein; enteroto 86.5 43 0.0015 36.9 20.1 46 804-849 250-295 (346)
28 1l8d_A DNA double-strand break 86.1 9.4 0.00032 34.9 12.0 34 836-869 68-101 (112)
29 3ghg_A Fibrinogen alpha chain; 85.9 8.1 0.00028 45.3 13.9 21 762-782 56-76 (562)
30 3bas_A Myosin heavy chain, str 85.2 17 0.00057 33.1 13.0 70 804-873 14-83 (89)
31 3o0z_A RHO-associated protein 84.5 34 0.0012 35.0 16.2 76 796-871 61-136 (168)
32 3ol1_A Vimentin; structural ge 84.1 17 0.00056 34.7 13.0 68 658-725 11-78 (119)
33 3haj_A Human pacsin2 F-BAR; pa 82.0 62 0.0021 36.5 18.9 23 857-879 189-211 (486)
34 1deq_A Fibrinogen (alpha chain 80.7 8.8 0.0003 43.4 11.2 29 664-692 64-92 (390)
35 3oja_A Leucine-rich immune mol 79.2 49 0.0017 36.6 16.6 6 743-748 325-330 (487)
36 1cii_A Colicin IA; bacteriocin 78.4 53 0.0018 38.4 16.5 60 674-733 349-408 (602)
37 2jee_A YIIU; FTSZ, septum, coi 78.0 18 0.00062 33.2 10.4 19 806-824 22-40 (81)
38 2efk_A CDC42-interacting prote 77.8 67 0.0023 33.0 21.7 26 822-847 127-152 (301)
39 2lw1_A ABC transporter ATP-bin 77.8 8.7 0.0003 34.7 8.3 55 812-866 23-83 (89)
40 3hnw_A Uncharacterized protein 77.4 26 0.00087 34.4 12.1 54 820-873 77-130 (138)
41 1ic2_A Tropomyosin alpha chain 76.9 30 0.001 30.8 11.4 58 800-857 16-73 (81)
42 3iyk_A VP5; icosahedral virus; 76.6 55 0.0019 38.4 16.2 103 663-774 93-196 (526)
43 1wle_A Seryl-tRNA synthetase; 75.3 9.5 0.00032 44.1 9.8 62 665-726 75-147 (501)
44 2fxo_A Myosin heavy chain, car 75.2 59 0.002 31.1 16.4 39 833-871 84-122 (129)
45 3cvf_A Homer-3, homer protein 75.2 15 0.0005 33.6 9.0 62 674-735 13-74 (79)
46 2dq0_A Seryl-tRNA synthetase; 74.3 12 0.0004 42.7 10.1 20 836-855 80-99 (455)
47 3a7p_A Autophagy protein 16; c 73.0 55 0.0019 33.1 13.3 67 804-877 68-134 (152)
48 4etp_A Kinesin-like protein KA 72.7 8.8 0.0003 43.0 8.5 47 821-867 13-59 (403)
49 3a7p_A Autophagy protein 16; c 72.5 39 0.0013 34.1 12.1 35 829-863 100-134 (152)
50 1wt6_A Myotonin-protein kinase 72.5 28 0.00097 32.0 10.1 59 671-729 14-72 (81)
51 1l8d_A DNA double-strand break 72.5 51 0.0018 30.0 12.2 29 842-870 67-95 (112)
52 1wle_A Seryl-tRNA synthetase; 72.2 21 0.00071 41.4 11.6 9 771-779 71-79 (501)
53 1m1j_B Fibrinogen beta chain; 71.8 35 0.0012 39.4 13.2 61 665-725 98-158 (464)
54 3cve_A Homer protein homolog 1 71.5 41 0.0014 30.3 10.8 64 666-736 6-69 (72)
55 2dq0_A Seryl-tRNA synthetase; 71.2 8.5 0.00029 43.8 8.1 64 664-727 35-101 (455)
56 1x79_B RAB GTPase binding effe 71.1 33 0.0011 33.1 10.8 65 805-872 39-103 (112)
57 2ocy_A RAB guanine nucleotide 70.0 72 0.0025 32.2 13.4 84 795-878 11-97 (154)
58 3i00_A HIP-I, huntingtin-inter 69.6 45 0.0016 32.2 11.5 65 805-872 16-80 (120)
59 2zqm_A Prefoldin beta subunit 69.0 68 0.0023 29.1 13.8 13 767-779 10-22 (117)
60 1m1j_B Fibrinogen beta chain; 68.5 44 0.0015 38.7 13.1 11 764-774 118-128 (464)
61 3swk_A Vimentin; cytoskeleton, 68.0 51 0.0017 30.0 10.9 31 839-869 49-79 (86)
62 2v4h_A NF-kappa-B essential mo 67.7 70 0.0024 30.9 12.1 69 656-728 20-88 (110)
63 3mq9_A Bone marrow stromal ant 67.3 1.5E+02 0.0052 32.6 17.4 25 740-764 349-373 (471)
64 4ad8_A DNA repair protein RECN 67.2 1.5E+02 0.0052 33.3 17.0 12 740-751 228-239 (517)
65 3qne_A Seryl-tRNA synthetase, 66.1 13 0.00045 43.0 8.3 63 665-727 38-103 (485)
66 3tnu_A Keratin, type I cytoske 65.5 97 0.0033 29.6 12.9 30 802-831 43-72 (131)
67 1m1j_A Fibrinogen alpha subuni 64.5 41 0.0014 39.0 11.7 19 664-682 62-80 (491)
68 1ses_A Seryl-tRNA synthetase; 64.5 10 0.00035 42.7 6.9 63 664-726 32-95 (421)
69 3tnu_B Keratin, type II cytosk 64.3 1E+02 0.0034 29.4 13.6 30 802-831 41-70 (129)
70 3ol1_A Vimentin; structural ge 64.2 1E+02 0.0034 29.3 15.8 87 768-874 18-104 (119)
71 2v4h_A NF-kappa-B essential mo 63.8 55 0.0019 31.6 10.6 62 812-884 25-86 (110)
72 3u06_A Protein claret segregat 63.8 15 0.00053 41.3 8.2 53 808-867 7-59 (412)
73 3aco_A Pacsin2, protein kinase 61.4 1.4E+02 0.0047 32.0 14.6 177 762-939 38-244 (350)
74 2v66_B Nuclear distribution pr 60.7 80 0.0028 30.4 11.2 81 668-748 4-86 (111)
75 2v71_A Nuclear distribution pr 60.7 1.6E+02 0.0055 30.5 23.0 17 855-871 156-172 (189)
76 3qh9_A Liprin-beta-2; coiled-c 59.9 91 0.0031 28.8 10.8 54 679-732 24-77 (81)
77 3abh_A Pacsin2, protein kinase 59.5 1.7E+02 0.0059 30.5 17.9 177 762-939 38-244 (312)
78 2p22_C Protein SRN2; endosome, 59.2 1.7E+02 0.0057 30.2 15.7 21 904-927 158-178 (192)
79 2dq3_A Seryl-tRNA synthetase; 58.3 11 0.00038 42.4 5.8 12 808-819 41-52 (425)
80 3qne_A Seryl-tRNA synthetase, 58.1 16 0.00056 42.2 7.2 22 834-855 80-101 (485)
81 4fla_A Regulation of nuclear P 57.6 1.2E+02 0.0043 30.1 12.5 116 654-781 16-142 (152)
82 2fxo_A Myosin heavy chain, car 57.5 1.3E+02 0.0046 28.6 16.9 54 816-869 60-113 (129)
83 2eqb_B RAB guanine nucleotide 57.5 1.3E+02 0.0045 28.5 13.6 39 802-840 24-62 (97)
84 4dyl_A Tyrosine-protein kinase 57.5 2.3E+02 0.0079 31.3 18.3 17 916-932 216-232 (406)
85 3swk_A Vimentin; cytoskeleton, 56.8 1.2E+02 0.004 27.6 11.6 48 827-874 30-77 (86)
86 2efl_A Formin-binding protein 56.6 1.8E+02 0.0061 29.8 21.8 32 816-847 128-159 (305)
87 3lss_A Seryl-tRNA synthetase; 56.6 29 0.001 40.1 8.9 29 665-693 42-70 (484)
88 1u4q_A Spectrin alpha chain, b 55.3 1.9E+02 0.0064 29.6 24.2 236 702-940 36-286 (322)
89 2fic_A Bridging integrator 1; 54.5 1.9E+02 0.0064 29.4 23.4 37 821-860 182-218 (251)
90 2efk_A CDC42-interacting prote 54.5 1.9E+02 0.0067 29.6 20.2 18 916-933 217-234 (301)
91 2i1j_A Moesin; FERM, coiled-co 54.1 8.3 0.00029 45.0 4.0 79 649-729 288-369 (575)
92 1gqe_A Release factor 2, RF2; 53.2 82 0.0028 35.5 11.4 43 739-781 25-69 (365)
93 4e61_A Protein BIM1; EB1-like 53.1 40 0.0014 32.3 7.7 45 663-707 7-51 (106)
94 2b5u_A Colicin E3; high resolu 52.8 3.5E+02 0.012 32.0 20.3 28 649-677 281-308 (551)
95 2w83_C C-JUN-amino-terminal ki 52.5 1E+02 0.0034 28.3 9.7 64 806-869 11-74 (77)
96 3q8t_A Beclin-1; autophagy, AT 52.2 1.5E+02 0.005 27.5 15.3 57 812-868 12-68 (96)
97 3l4q_C Phosphatidylinositol 3- 51.9 2.1E+02 0.0073 29.2 16.3 26 836-861 128-153 (170)
98 1jcd_A Major outer membrane li 51.1 66 0.0023 27.3 7.9 34 829-862 15-48 (52)
99 2q6q_A Spindle POLE BODY compo 50.5 57 0.0019 29.4 7.7 24 801-824 7-30 (74)
100 3lay_A Zinc resistance-associa 50.2 24 0.00083 35.9 6.2 10 721-730 118-127 (175)
101 2wt7_B Transcription factor MA 50.1 68 0.0023 29.9 8.5 24 799-822 50-73 (90)
102 2dq3_A Seryl-tRNA synthetase; 49.7 9.2 0.00031 43.0 3.4 63 665-727 35-100 (425)
103 1deq_A Fibrinogen (alpha chain 49.3 1.6E+02 0.0056 33.5 13.0 29 792-820 54-83 (390)
104 1fxk_C Protein (prefoldin); ar 49.1 1.7E+02 0.0059 27.4 11.5 34 808-841 92-125 (133)
105 2eqb_B RAB guanine nucleotide 48.8 1.8E+02 0.0062 27.5 13.8 58 661-718 6-63 (97)
106 1cii_A Colicin IA; bacteriocin 48.6 2.5E+02 0.0086 33.0 14.4 30 839-868 370-399 (602)
107 3tnu_A Keratin, type I cytoske 48.5 1.4E+02 0.0049 28.5 10.9 62 664-725 42-107 (131)
108 4fye_A SIDF, inhibitor of grow 48.2 2.3E+02 0.008 32.3 13.9 23 871-893 594-616 (761)
109 1g8x_A Myosin II heavy chain f 47.9 4.3E+02 0.015 33.2 17.6 34 739-778 851-884 (1010)
110 3tnu_B Keratin, type II cytosk 47.1 1.7E+02 0.0058 27.8 11.2 39 672-710 34-72 (129)
111 4fla_A Regulation of nuclear P 47.1 2.3E+02 0.0079 28.2 13.1 55 672-726 73-127 (152)
112 2efl_A Formin-binding protein 46.9 2.5E+02 0.0086 28.6 20.1 18 915-932 223-240 (305)
113 2ke4_A CDC42-interacting prote 46.7 1.1E+02 0.0037 28.7 9.4 32 663-694 18-49 (98)
114 3lss_A Seryl-tRNA synthetase; 44.9 49 0.0017 38.3 8.3 20 836-855 115-134 (484)
115 4dyl_A Tyrosine-protein kinase 44.6 3.6E+02 0.012 29.8 18.6 22 918-939 196-217 (406)
116 1m1j_C Fibrinogen gamma chain; 44.6 37 0.0013 38.6 7.2 8 809-816 89-96 (409)
117 2d4y_A HAP1, flagellar HOOK-as 44.6 2.5E+02 0.0087 31.5 13.8 77 797-878 71-147 (463)
118 4efa_E V-type proton ATPase su 44.4 1.3E+02 0.0045 30.8 10.6 34 1058-1091 42-75 (233)
119 3bas_A Myosin heavy chain, str 44.2 1.8E+02 0.0063 26.3 12.0 59 689-756 29-87 (89)
120 3s84_A Apolipoprotein A-IV; fo 44.1 3.3E+02 0.011 29.2 23.6 19 895-913 229-247 (273)
121 2lw1_A ABC transporter ATP-bin 43.9 1E+02 0.0034 27.7 8.6 47 801-847 26-78 (89)
122 4gkw_A Spindle assembly abnorm 43.8 2.6E+02 0.009 28.0 21.2 12 804-815 119-130 (167)
123 2no2_A HIP-I, huntingtin-inter 42.3 2.3E+02 0.0078 26.8 11.2 75 768-844 27-101 (107)
124 3etw_A Adhesin A; antiparallel 42.1 2.5E+02 0.0087 27.3 14.2 11 857-867 99-109 (119)
125 3htk_A Structural maintenance 42.1 1.5E+02 0.005 24.5 8.7 33 689-721 20-52 (60)
126 3tul_A Cell invasion protein S 42.1 2.8E+02 0.0096 28.2 12.0 15 739-753 20-34 (158)
127 4emc_A Monopolin complex subun 41.9 1.2E+02 0.0043 31.5 9.8 62 664-725 10-71 (190)
128 1i4d_A Arfaptin 2, partner of 41.6 3.4E+02 0.012 28.7 16.8 124 789-915 68-194 (224)
129 1yvl_A Signal transducer and a 40.7 4.2E+02 0.014 32.2 15.4 103 800-902 140-263 (683)
130 2js5_A Uncharacterized protein 40.5 44 0.0015 30.1 5.5 60 813-872 5-64 (71)
131 2b5u_A Colicin E3; high resolu 40.4 5.3E+02 0.018 30.6 17.0 16 320-335 32-47 (551)
132 3csx_A Putative uncharacterize 40.3 39 0.0013 31.1 5.3 60 813-872 17-76 (81)
133 3cvf_A Homer-3, homer protein 39.9 1.7E+02 0.0056 26.8 9.2 49 835-883 23-71 (79)
134 3sjb_C Golgi to ER traffic pro 39.5 70 0.0024 30.1 6.9 26 759-784 19-44 (93)
135 3hhm_B NISH2 P85alpha; PI3KCA, 39.2 4.5E+02 0.015 29.4 15.6 15 923-937 304-318 (373)
136 4e61_A Protein BIM1; EB1-like 39.1 96 0.0033 29.8 7.9 26 839-864 25-50 (106)
137 3hhm_B NISH2 P85alpha; PI3KCA, 39.0 4.5E+02 0.016 29.4 15.3 26 706-731 144-169 (373)
138 2w83_C C-JUN-amino-terminal ki 38.9 2.3E+02 0.0079 26.0 10.3 24 665-688 7-30 (77)
139 1y1u_A Signal transducer and a 38.7 2E+02 0.0069 34.2 12.3 46 846-891 123-174 (585)
140 3cve_A Homer protein homolog 1 37.7 2.3E+02 0.0079 25.5 10.8 52 832-883 14-65 (72)
141 1m1j_C Fibrinogen gamma chain; 37.5 1.8E+02 0.0061 33.1 11.2 18 665-682 36-53 (409)
142 4etp_A Kinesin-like protein KA 37.3 83 0.0029 35.3 8.5 42 667-708 3-44 (403)
143 3rmi_A Chorismate mutase prote 37.3 1.8E+02 0.006 27.5 9.4 74 835-908 15-90 (114)
144 2v0o_A FCHO2, FCH domain only 37.2 3.4E+02 0.012 27.4 20.4 30 748-777 20-49 (276)
145 2j69_A Bacterial dynamin-like 37.2 5.9E+02 0.02 30.2 17.2 13 939-951 505-517 (695)
146 3a7o_A Autophagy protein 16; c 36.7 2E+02 0.0069 26.1 9.0 54 801-854 15-68 (75)
147 3ghg_C Fibrinogen gamma chain; 36.7 71 0.0024 36.5 7.8 92 664-757 35-137 (411)
148 1g6u_A Domain swapped dimer; d 36.6 1.1E+02 0.0037 25.3 6.7 11 808-818 4-14 (48)
149 1m1j_A Fibrinogen alpha subuni 36.5 3.7E+02 0.013 31.5 13.5 25 792-816 52-77 (491)
150 2oto_A M protein; helical coil 35.6 3.2E+02 0.011 26.6 14.6 54 765-824 24-77 (155)
151 2b9c_A Striated-muscle alpha t 35.3 2.6E+02 0.0089 27.7 10.7 137 661-850 11-147 (147)
152 3haj_A Human pacsin2 F-BAR; pa 34.3 5.5E+02 0.019 28.9 26.7 66 811-879 185-251 (486)
153 3nmd_A CGMP dependent protein 34.3 1.4E+02 0.0049 26.9 7.8 26 711-736 42-67 (72)
154 3uun_A Dystrophin; triple heli 32.7 2.5E+02 0.0085 24.5 10.5 114 767-880 6-119 (119)
155 2d4y_A HAP1, flagellar HOOK-as 32.4 3.5E+02 0.012 30.3 12.5 83 695-777 64-150 (463)
156 1wt6_A Myotonin-protein kinase 32.3 1.9E+02 0.0066 26.7 8.4 40 810-849 30-69 (81)
157 1ik9_A DNA repair protein XRCC 32.3 2.9E+02 0.01 28.8 11.0 76 655-730 111-196 (213)
158 2wt7_B Transcription factor MA 32.1 3.2E+02 0.011 25.5 10.6 62 674-735 21-88 (90)
159 2zqm_A Prefoldin beta subunit 32.1 2.9E+02 0.0098 25.0 13.8 16 804-819 20-35 (117)
160 2xnx_M M protein, M1-BC1; cell 31.9 54 0.0019 33.0 5.2 65 807-871 69-133 (146)
161 2e7s_A RAB guanine nucleotide 31.5 81 0.0028 31.3 6.3 53 834-892 41-93 (135)
162 3d5a_X RF1, peptide chain rele 31.5 1.8E+02 0.0061 32.8 9.8 40 742-781 6-47 (354)
163 1sig_A Sigma70, RNA polymerase 31.2 5.1E+02 0.017 27.6 14.9 31 907-937 298-335 (339)
164 3nmd_A CGMP dependent protein 31.0 1.5E+02 0.0052 26.8 7.4 23 827-849 42-64 (72)
165 3fhn_A Protein transport prote 30.1 5.9E+02 0.02 31.0 14.5 38 897-934 245-287 (706)
166 4dnd_A Syntaxin-10, SYN10; str 29.1 3.4E+02 0.012 26.3 10.2 95 650-757 28-130 (130)
167 4dk0_A Putative MACA; alpha-ha 27.9 2.2E+02 0.0076 30.0 9.5 33 660-692 63-95 (369)
168 2ap3_A Conserved hypothetical 27.4 4.4E+02 0.015 27.5 11.2 26 827-852 164-189 (199)
169 3mtu_A Tropomyosin alpha-1 cha 27.1 1.7E+02 0.0058 26.1 7.1 34 829-862 6-39 (75)
170 2k48_A Nucleoprotein; viral pr 27.0 4.3E+02 0.015 25.5 11.0 38 785-824 25-62 (107)
171 3jsv_C NF-kappa-B essential mo 27.0 4.1E+02 0.014 25.1 11.0 30 855-884 35-64 (94)
172 3tul_A Cell invasion protein S 26.7 5.2E+02 0.018 26.3 11.6 28 853-880 107-134 (158)
173 2e7s_A RAB guanine nucleotide 26.6 2E+02 0.0069 28.6 8.1 37 804-840 46-82 (135)
174 3ghg_C Fibrinogen gamma chain; 26.6 1.9E+02 0.0064 33.2 9.0 10 767-776 59-68 (411)
175 1bg1_A Protein (transcription 26.5 9E+02 0.031 29.0 15.8 61 842-902 75-141 (596)
176 3s84_A Apolipoprotein A-IV; fo 26.3 6.2E+02 0.021 27.0 21.8 15 683-697 39-53 (273)
177 2avr_X Adhesion A; antiparalle 26.3 2.4E+02 0.0082 27.6 8.4 72 664-735 31-104 (119)
178 2xs1_A Programmed cell death 6 26.2 8.9E+02 0.03 28.8 22.9 18 907-924 667-684 (704)
179 3fb2_A Spectrin alpha chain, b 26.1 4.7E+02 0.016 25.6 11.8 44 843-887 89-132 (218)
180 3ryc_E Stathmin-4; alpha-tubul 26.0 5.1E+02 0.018 26.0 13.2 15 660-674 43-57 (143)
181 4avm_A Bridging integrator 2; 25.7 5.7E+02 0.019 26.4 18.4 39 820-861 162-200 (237)
182 3q0x_A Centriole protein; cent 25.3 3.4E+02 0.012 28.9 10.1 66 654-722 154-219 (228)
183 3i2w_A Syndapin, LD46328P; EFC 25.2 5.7E+02 0.02 26.2 16.1 25 910-934 215-239 (290)
184 1quu_A Human skeletal muscle a 25.2 5.3E+02 0.018 25.8 18.9 115 664-778 52-177 (250)
185 3fpp_A Macrolide-specific effl 24.9 3.4E+02 0.012 28.3 10.1 33 661-693 63-95 (341)
186 1jcd_A Major outer membrane li 24.7 3.2E+02 0.011 23.2 7.9 14 833-846 12-25 (52)
187 2ocy_A RAB guanine nucleotide 24.7 5.5E+02 0.019 25.9 18.5 42 799-840 53-94 (154)
188 1ecm_A Endo-oxabicyclic transi 24.7 2.5E+02 0.0084 25.7 8.0 79 834-912 7-87 (109)
189 3kyp_A Pfnaps, nucleosome asse 24.6 1.4E+02 0.0049 30.3 7.0 27 858-884 19-45 (193)
190 3ghg_B Fibrinogen beta chain; 24.3 2E+02 0.0067 33.5 8.7 15 766-780 115-129 (461)
191 1gl2_D Syntaxin 8, vesicle tra 24.0 2.9E+02 0.01 23.2 7.7 52 812-863 10-61 (65)
192 3mq9_A Bone marrow stromal ant 23.7 7.5E+02 0.026 27.1 15.8 43 832-877 418-460 (471)
193 3etw_A Adhesin A; antiparallel 23.3 4.1E+02 0.014 25.9 9.4 17 665-681 7-23 (119)
194 3ghg_B Fibrinogen beta chain; 22.7 1.1E+02 0.0039 35.4 6.4 31 664-694 92-122 (461)
195 3aon_A V-type sodium ATPase su 22.6 2.4E+02 0.0082 29.1 8.3 52 656-707 13-64 (217)
196 2yy0_A C-MYC-binding protein; 22.3 1.4E+02 0.0049 25.2 5.3 12 808-819 23-34 (53)
197 3viq_B Mating-type switching p 22.3 1.8E+02 0.0063 26.9 6.5 24 801-824 5-28 (85)
198 4h22_A Leucine-rich repeat fli 22.2 3.9E+02 0.013 25.6 8.8 83 772-857 1-83 (103)
199 3frt_A Charged multivesicular 22.0 5.3E+02 0.018 27.0 10.8 29 740-778 22-50 (218)
200 3f1i_H Hepatocyte growth facto 21.8 5.3E+02 0.018 24.6 9.9 58 813-874 36-93 (98)
201 2vkl_A RV0948C/MT0975; helical 21.7 1.6E+02 0.0054 26.7 6.0 37 660-696 12-48 (90)
202 2e50_A Protein SET; histone ch 21.4 2.5E+02 0.0086 29.3 8.2 26 858-883 49-74 (225)
203 3onj_A T-snare VTI1; helix, HA 21.4 4.7E+02 0.016 23.9 9.6 22 683-704 32-53 (97)
204 3sja_C Golgi to ER traffic pro 21.3 2.2E+02 0.0075 25.3 6.5 22 763-784 6-27 (65)
205 2ke4_A CDC42-interacting prote 21.3 5.1E+02 0.017 24.2 10.3 20 853-872 62-81 (98)
206 1gmj_A ATPase inhibitor; coile 21.1 5E+02 0.017 24.1 10.4 7 795-801 21-27 (84)
207 3iv1_A Tumor susceptibility ge 21.1 4.8E+02 0.016 23.9 10.1 59 664-726 15-73 (78)
208 3q0x_A Centriole protein; cent 21.0 4.1E+02 0.014 28.3 9.7 13 649-661 75-87 (228)
209 3i00_A HIP-I, huntingtin-inter 21.0 4.8E+02 0.016 25.2 9.4 17 801-817 44-60 (120)
210 3iox_A AGI/II, PA; alpha helix 20.9 1.1E+03 0.037 27.9 18.8 32 902-952 95-126 (497)
211 1bf5_A Signal transducer and a 20.8 1.1E+03 0.036 28.3 14.0 29 844-872 64-92 (575)
212 2inr_A DNA topoisomerase 4 sub 20.6 1.1E+03 0.037 27.8 14.7 32 281-312 30-61 (514)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.67 E-value=0.00023 Score=69.05 Aligned_cols=71 Identities=8% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
+.|++++..+..++..+......+..++..++.....+...+..+..++..++..+.....++..++..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLE 72 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777777777777777777777666666666666666555555555555444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.47 E-value=0.0011 Score=64.27 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeL 707 (1113)
+...++.+..++..+......+...+..++.....+...+..+
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333333333333333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.07 E-value=0.00065 Score=70.92 Aligned_cols=84 Identities=13% Similarity=0.249 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001257 694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773 (1113)
Q Consensus 694 RAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIK 773 (1113)
+.+|..+-.++..|..+...++..+.....++..+...+.++. ..++++..+|.+.+.++...+ +-.|=..+.+||.
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e--~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie 100 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE--QTLQDTNAKIASIQKKMSEIK-SERELRSLNIEED 100 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444443333 245555666777777776554 4444455666666
Q ss_pred HHHHHHH
Q 001257 774 QLKQRRE 780 (1113)
Q Consensus 774 QLKKqRK 780 (1113)
.++....
T Consensus 101 ~~~~~i~ 107 (256)
T 3na7_A 101 IAKERSN 107 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.79 E-value=0.0048 Score=64.48 Aligned_cols=86 Identities=8% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccCCCHH
Q 001257 670 KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-------MMKNAISVD 742 (1113)
Q Consensus 670 deLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~-------KLRNAKSVE 742 (1113)
+.++.+|..+...|..+-.++..+..+...+..++..+..+...+...+...-.++..++..+. ..++.+-..
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~ 93 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR 93 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3555666666666666667777766666666666666666665555555555555555544443 333334455
Q ss_pred HHHHHHHHHHHHh
Q 001257 743 DIDGSIRNMEHRI 755 (1113)
Q Consensus 743 EIDarIkrLE~RI 755 (1113)
.|.++|..++.++
T Consensus 94 aL~kEie~~~~~i 106 (256)
T 3na7_A 94 SLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555666555443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.61 E-value=8.4e-06 Score=100.36 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~ 711 (1113)
..+..++..+..++.++......+..++..+..+...+..++..+..++
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~el 964 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655555555544444444444444443333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.58 E-value=0.00013 Score=90.15 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=13.5
Q ss_pred ccccccCCCCCCccchhHHhhhccc
Q 001257 472 NVGIQHAGGEKDDHRSKELEENMET 496 (1113)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1113)
..+|.|..|.-.-.-..-|+.|+.+
T Consensus 579 ~F~i~Hyag~V~Y~~~gfl~kN~d~ 603 (1184)
T 1i84_S 579 EFCILHYAGKVTYNASAWLTKNMDP 603 (1184)
T ss_dssp EEEEECSSCEEEEECTTHHHHHHCC
T ss_pred cEEEECCCceEEeccCCchhhccCc
Confidence 3555666665555555555555543
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.12 E-value=0.23 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=18.0
Q ss_pred cccccccCCCCCCccchhHHhhhcccc
Q 001257 471 ENVGIQHAGGEKDDHRSKELEENMETE 497 (1113)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1113)
...+|.|..|.-.-.-..-|+.|..+-
T Consensus 546 ~~F~I~HyAG~V~Y~~~gfleKN~D~l 572 (1080)
T 2dfs_A 546 KAFIIKHFADKVEYQCEGFLEKNKDTV 572 (1080)
T ss_dssp SEEEEECSSCEEEEECTTHHHHHBCCC
T ss_pred CceEEEecceEEEEehhhHHHhccccc
Confidence 356777777776666666777776643
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.84 E-value=2.4 Score=58.33 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
+++....+++.+++.++..+++++..++.+|++...+-..|+.+.+....+.+.|-.=+..|-.|
T Consensus 2021 ~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34444444444445554455555555555555554444555555554444444444444444433
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.82 E-value=1.1 Score=55.66 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES 838 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIk 838 (1113)
.....+++.|.++++.++.++.++..+.+++..+++.+.
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666555555555555555544444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.86 E-value=0.25 Score=55.59 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVK 831 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALk 831 (1113)
++..++++++.+++++..++..++..+
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 333444444444444333333333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.33 E-value=5.3 Score=40.77 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL 845 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQ 845 (1113)
.++.+|..|..+++.++..+..+....+.+..++..+..+...+.
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677788888888888877777777777777776666655554
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.25 E-value=13 Score=51.55 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=10.7
Q ss_pred CCCCCccc--ccceEEEEec
Q 001257 21 LPNGNAIA--DSSCVFVEVS 38 (1113)
Q Consensus 21 ~~~~~~~~--~~~~~~~~~~ 38 (1113)
||||-.|. +.-.+++||.
T Consensus 1016 L~nGErI~l~~~~~liFEv~ 1035 (3245)
T 3vkg_A 1016 LPNGERLALPNNVRVMFEVQ 1035 (3245)
T ss_dssp CTTSCCEECCTTEEEEEEES
T ss_pred cCCCCeeecCCCCEEEEEec
Confidence 67777664 3344556664
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.81 E-value=0.6 Score=42.74 Aligned_cols=63 Identities=13% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQS-------KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 663 EeLKAKIdeLqK-------EIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+.|.+||..|-. +|++++.+...+..+...+++.|..|..+...|++++..|+..+...+..|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777776655 888888888999999999999999999999999888888887666555444
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.63 E-value=1.6 Score=49.16 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 826 ATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 826 klKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
.+++..+.++.++.++..+...++...++..+...+...++.+..+...
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444445555554444444
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.46 E-value=0.92 Score=52.82 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLE 824 (1113)
.+|+.|+.-|+.++.+|..|+
T Consensus 131 snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.56 E-value=3.4 Score=38.15 Aligned_cols=93 Identities=9% Similarity=0.231 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISV 741 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSV 741 (1113)
-+.|+.||..++.+......+-..+..+++....++..+-..+.+|.-+.+.+...+..-...+...+..|.... +..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e--k~~ 81 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE--KKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 357899999999888888888888888888888888888888888877777777766665555555554443221 122
Q ss_pred HHHHHHHHHHHHHhh
Q 001257 742 DDIDGSIRNMEHRIA 756 (1113)
Q Consensus 742 EEIDarIkrLE~RIQ 756 (1113)
.+-+..+..|..+||
T Consensus 82 ~~AE~evasLnRriq 96 (101)
T 3u59_A 82 TDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344455555444
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.56 E-value=3.3 Score=38.49 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
+.|..+|..|+.+.+....+...++..++....+......+|.+|+..++.+-...+.+-..+......+....+
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888888888888888888888888888888887777766665555444
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.52 E-value=14 Score=38.17 Aligned_cols=85 Identities=9% Similarity=0.103 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTK 884 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ir 884 (1113)
.|..|.+++..++.....+...+..|.-.-|++....-.+...+..+-.+-+.+++..--|-.+.+++-.--....|...
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkd 168 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKD 168 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555566666666666666677777777777777777777765554445556666
Q ss_pred HHHHH
Q 001257 885 QANDL 889 (1113)
Q Consensus 885 KAREL 889 (1113)
.+|+|
T Consensus 169 E~rDL 173 (189)
T 2v71_A 169 EARDL 173 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66666
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.32 E-value=3.7 Score=37.94 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
+.|..+|..|+.+.+....+...++..++.+..+......+|..|+..++.+-...+.+-..+..+...+....+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888888777777766665555433
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.60 E-value=15 Score=36.87 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSL 865 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeL 865 (1113)
+.+.++|+.|...+.+.-......+-.+..+.+.++.+.+++..-...+..+.+..+..|..+..+
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788888888888777777777777788888888888887777777777888888777777765
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.17 E-value=17 Score=36.62 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqn 879 (1113)
+....++..|-.++..+-..++.++..-.....+-+.+..+|..|..+++++...=..|=.....|-+..+..-..++..
T Consensus 38 e~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777777777777777777777777777777777777766655
Q ss_pred HHHHHHH
Q 001257 880 KDDTKQA 886 (1113)
Q Consensus 880 RR~irKA 886 (1113)
+......
T Consensus 118 Kek~~~i 124 (155)
T 2efr_A 118 KLKYKAI 124 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.89 E-value=11 Score=34.99 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 763 KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842 (1113)
Q Consensus 763 vEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEId 842 (1113)
.+|.++++++..|.+.+..+ ...|..+..+...+..+ -...-..|+..+-++.
T Consensus 18 ~eE~~L~~eL~~lEke~~~l--------------------~~el~~le~E~~~L~~e-------E~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVV--------------------AENLEKVQAEAERLDQE-------EAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH--------------------HHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHH
Confidence 57888888888888887542 23444555555544443 3445566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 843 RLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 843 ELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
..+++++.+..+.+=+-..+..||+
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999888888888888875
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.82 E-value=6 Score=36.76 Aligned_cols=69 Identities=7% Similarity=0.146 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS 730 (1113)
Q Consensus 662 DEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQs 730 (1113)
.+.|+.||..++.+......+-..+..+++....++..+-..+.+|.-+.+.+...+..-...+...+.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888888888877777777777766666666655554444443333
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.40 E-value=5.3 Score=35.57 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
.|..+|..|+.+.+....++..++..++...++......+|..|+..++.+-...+++-+.+...-..+..
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777776666655554443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.31 E-value=2.3 Score=41.68 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
.+..++..+.+|+..|+.++..+..++..+.+++.+++.++++|+.+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433444443333333333333333
No 26
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=89.20 E-value=42 Score=39.87 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc-hhHHHHHhhhH-H---HH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRREQISSSIGE-HDEVQLAFDQK-D---QI-EEKM--KFLRKEADSLRENVIKAEAATQAVKKLHREE 837 (1113)
Q Consensus 766 KKLLKEIKQLKKqRKkViAnaa~-rAkIQESidQK-E---aI-qEQI--KaLKKELDELRkKLkkLEeklKALkKK~DEI 837 (1113)
|.+|.++..|+..|..+..-+-. .+.|...+... . .+ .+.| +.|.+.++.+...+...-..-..|-+.+...
T Consensus 559 ~~~l~~l~~l~~~R~~~~~~lk~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~ 638 (704)
T 2xs1_A 559 KSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVS 638 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999998876442210 01111111100 0 00 0111 1222333444444333322233333333344
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 838 SEKLKR------LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK 878 (1113)
Q Consensus 838 kaEIdE------LQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq 878 (1113)
+.++.. -+.++..+-.....+|....+|+....++.+ ||+
T Consensus 639 ~~~f~~~~~~~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~-FY~ 684 (704)
T 2xs1_A 639 HQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTK-FYN 684 (704)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 444322 2355566666677788888888888888777 663
No 27
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=86.50 E-value=43 Score=36.88 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk 849 (1113)
..+..+...++.+...+..+..-+..+......+..+|..|..-++
T Consensus 250 ~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~ 295 (346)
T 2nrj_A 250 RVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIE 295 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555665555555555555444443
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.09 E-value=9.4 Score=34.93 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkRDEAYEeLkeLRKER 869 (1113)
.+..++..+..++..+.......-..+..|+.++
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.92 E-value=8.1 Score=45.27 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 001257 762 LKEEKQIIREIKQLKQRREQI 782 (1113)
Q Consensus 762 LvEEKKLLKEIKQLKKqRKkV 782 (1113)
+.-|+-+.+-|..|+.+.+.+
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 556777777777777776654
No 30
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.22 E-value=17 Score=33.09 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkN 873 (1113)
+.++.+..++..++..+...+..++++..++..+..+.+.|+.++..+.+.+.........|-.+..+++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888877777788888788888888888887766666666555555555555554443
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.53 E-value=34 Score=34.98 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 796 FDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 796 idQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
-..+..++.++..|...++.-|.......+.+..+.-++..+..++..+...+..+...+..+-+.+..|-++...
T Consensus 61 ~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 61 ENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666777777777777666666666666666666666666666666666666666666666666665444
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.05 E-value=17 Score=34.68 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 658 PRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 658 PRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
|..+.+-+...|..|+.+|..+...+..|..+++.++..-..+..+...-...+......+...++.+
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 44567788999999999999999999999999988887777777666554444433333333333333
No 33
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=82.01 E-value=62 Score=36.54 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001257 857 EAYKHWQSLKKQAYDKNQHFWKY 879 (1113)
Q Consensus 857 EAYEeLkeLRKERDEkNkeFYqn 879 (1113)
++..++.+.+.+..+....|..+
T Consensus 189 K~~~k~~k~~~~~~~a~~~Y~~~ 211 (486)
T 3haj_A 189 KLQDKIEKCKQDVLKTKEKYEKS 211 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.68 E-value=8.8 Score=43.41 Aligned_cols=29 Identities=3% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELka 692 (1113)
.|+.+|+.|+..+..+.+.-..+..-+..
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~ 92 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKN 92 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57777777777777776654444443333
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.18 E-value=49 Score=36.62 Aligned_cols=6 Identities=0% Similarity=-0.457 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001257 743 DIDGSI 748 (1113)
Q Consensus 743 EIDarI 748 (1113)
+..+++
T Consensus 325 eF~~Ev 330 (487)
T 3oja_A 325 TERLEC 330 (487)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 333333
No 36
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=78.39 E-value=53 Score=38.37 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001257 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN 733 (1113)
Q Consensus 674 KEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~ 733 (1113)
.+...++|+-+.+++++..+-+.++.++.++..+..+.+..+..+..+.++-..++..+.
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a 408 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLS 408 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777888888888888888888888888888888888888877777665543
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.97 E-value=18 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLE 824 (1113)
|..|+-|+++||.+-..+.
T Consensus 22 I~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555444433333
No 38
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=77.84 E-value=67 Score=33.02 Aligned_cols=26 Identities=4% Similarity=0.055 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 822 KAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 822 kLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
.....+...+++|+....++......
T Consensus 127 ~~~~~l~KaKk~Y~~~~~e~e~a~~~ 152 (301)
T 2efk_A 127 NGFKQLENSKRKFERDCREAEKAAQT 152 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455444444443333
No 39
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=77.77 E-value=8.7 Score=34.66 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHRE------ESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DE------IkaEIdELQEELkALdEkRDEAYEeLkeLR 866 (1113)
+++.|-.+|..+++++.+|..++.+ -..++..+..++.++....+.+|..|-.|=
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444454444432 125677788888888888888999887763
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.45 E-value=26 Score=34.42 Aligned_cols=54 Identities=7% Similarity=-0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873 (1113)
Q Consensus 820 LkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkN 873 (1113)
...++..++++.+.+..++.++.+++.++..+.....++-+++++|..+..+..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555555555555555555555555555544443
No 41
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.90 E-value=30 Score=30.80 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE 857 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDE 857 (1113)
+...++...+...+..........+..+..|++++..+..++....+.+..+..+-..
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555566666666666666666666666665555544433
No 42
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=76.63 E-value=55 Score=38.35 Aligned_cols=103 Identities=10% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD 742 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVE 742 (1113)
-.+..||.+|+.+ ++++.++.+..++-.++ +-..|..++.-.+.--..-....+|++-|..++..+. +=+.
T Consensus 93 ~~~~~Kl~eLE~e-----~k~d~~~~khn~~I~~k--~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~--~i~~ 163 (526)
T 3iyk_A 93 RGIQAKLKELEDE-----QRNELVRLKYNDKIKEK--FGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYN--KILT 163 (526)
T ss_pred HHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HHHH
Confidence 3678888888776 33333333333332222 2233333322221111111223344544444443332 1223
Q ss_pred HHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHH
Q 001257 743 DIDGSIRNMEHRIAHET-LPLKEEKQIIREIKQ 774 (1113)
Q Consensus 743 EIDarIkrLE~RIQTgS-LSLvEEKKLLKEIKQ 774 (1113)
+=+.+|.+|-.-++.+. +.-.+|+++|.+..+
T Consensus 164 ~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~ 196 (526)
T 3iyk_A 164 EEDLQMRRLATALQKEIGERTHAETVMVKEYRD 196 (526)
T ss_pred HHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 33456777777777765 688899999988654
No 43
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.33 E-value=9.5 Score=44.13 Aligned_cols=62 Identities=3% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA-----------SYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA-----------ERdELiEQLKeLReE~KqlReel~EKIKEId 726 (1113)
+..+...++.+++.++..|+++..++..++. +..+|+++++.|+++++.+...+.+..+++.
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666777777777766665432 3345666666666666655555444444443
No 44
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.20 E-value=59 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 833 K~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
++.++...+.........+...+.++-..+..|+++.+.
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444445555555555555555544
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.18 E-value=15 Score=33.62 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 674 SKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 674 KEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
..++.+-.+...+...+..+..+-..-..+-..++.+.+.+...++-||.+|..|+..|.++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33333333333444444444444444444444555555666778888999999999888776
No 46
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=74.30 E-value=12 Score=42.71 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIR 855 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkR 855 (1113)
+++++|..|.+++.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.03 E-value=55 Score=33.08 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
..|..|++++..++.++..++..+++-.+-++.+++++..|+-++..+. .++..|.++-+.+-.-|.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE-------~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ-------QKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4666777888888888777777777766666666666666665544444 445555555555555554
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.67 E-value=8.8 Score=43.00 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 821 IKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 821 kkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
..++++..++...+.++..++..+.+++......|.++|+.+.+|+-
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333344444555555567777777777777888888999888763
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.55 E-value=39 Score=34.14 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
.+.+.+..++-+++.+..+++.+.+.-+++...|-
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555553
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.51 E-value=28 Score=32.03 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 671 AAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ 729 (1113)
Q Consensus 671 eLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQ 729 (1113)
.|+..++.-++.+..|..+|...|+.--.+..+|++...+.+.+...+..+.++|+.|+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556667788888888888888888899888888888888888888887765
No 51
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.50 E-value=51 Score=30.03 Aligned_cols=29 Identities=3% Similarity=0.040 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAY 870 (1113)
Q Consensus 842 dELQEELkALdEkRDEAYEeLkeLRKERD 870 (1113)
..+..++..+......+...+..|..+..
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 52
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.24 E-value=21 Score=41.38 Aligned_cols=9 Identities=22% Similarity=-0.093 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001257 771 EIKQLKQRR 779 (1113)
Q Consensus 771 EIKQLKKqR 779 (1113)
+|-.|...|
T Consensus 71 ~~~~ld~~~ 79 (501)
T 1wle_A 71 GIISTWQEL 79 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.77 E-value=35 Score=39.42 Aligned_cols=61 Identities=5% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
++..|.+|+..+..+-+.-.....-+..++..-.....++..+....+++...+..+...+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3444444444444443333332233333333344444444444444444444444444333
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.46 E-value=41 Score=30.29 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 666 KAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
-.++..+...-..+...-..+...|..-+.+|. .++.+.+.+...++-||.+|..|+..|.++-
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~-------~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD-------AFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 344444444444444433344444444444444 4444555567788889999999998887763
No 55
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=71.24 E-value=8.5 Score=43.80 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR---AERdELiEQLKeLReE~KqlReel~EKIKEIds 727 (1113)
++..+...++.+++.++..|+++..++..++ .+..+|+++++.|+++.+.+...+.+..+++..
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777777776644 235566667777766666666655555555543
No 56
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.09 E-value=33 Score=33.07 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
+-..-++++..|...+...+..+..+.+.|...+.. .+.++..|..-|...+.++..|..+-+.+
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 334456778888888888888888999888888866 88999999999999999999888765543
No 57
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.05 E-value=72 Score=32.18 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=53.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 795 AFDQKDQIEEKMKFLRKEADSLRENVIKAE---AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 795 SidQKEaIqEQIKaLKKELDELRkKLkkLE---eklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
+|...-.+.+.+..+++++...+..+..++ ..+..+.........++..|...+..-...|-.+=.....+-.+...
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444444322 23333444444566777777788888888888888888888888888
Q ss_pred HHHHHHH
Q 001257 872 KNQHFWK 878 (1113)
Q Consensus 872 kNkeFYq 878 (1113)
...++|.
T Consensus 91 LTasLFe 97 (154)
T 2ocy_A 91 LTASLFD 97 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888774
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.56 E-value=45 Score=32.23 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 805 QIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
.|..|+.+++.|+.++..+. -+....+..+...|..|..++..-...+++|......||.+....
T Consensus 16 ~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888777765 344556788889999999999999999999999999999887764
No 59
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.97 E-value=68 Score=29.13 Aligned_cols=13 Identities=8% Similarity=0.347 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRR 779 (1113)
Q Consensus 767 KLLKEIKQLKKqR 779 (1113)
.++.+.++|+...
T Consensus 10 ~~i~~~~~l~~~~ 22 (117)
T 2zqm_A 10 AMLGQLESYQQQL 22 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.47 E-value=44 Score=38.66 Aligned_cols=11 Identities=18% Similarity=0.136 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 001257 764 EEKQIIREIKQ 774 (1113)
Q Consensus 764 EEKKLLKEIKQ 774 (1113)
+.+++|+.|+.
T Consensus 118 ~~~~~i~~Iq~ 128 (464)
T 1m1j_B 118 TMYQYVNMIDN 128 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 61
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.95 E-value=51 Score=29.98 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKER 869 (1113)
.++..|.+.++.++-.|-..=.++..|+++.
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=67.71 E-value=70 Score=30.90 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=44.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV 728 (1113)
Q Consensus 656 KVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsL 728 (1113)
|+.+.....|+.++..+++.+..+....+.+..++.. +++-.+++.=|++|..-|+.-+..-+...+.+
T Consensus 20 ~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 20 HMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 3444557789999999999999888888777776655 44444556666666555555444444443333
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.34 E-value=1.5e+02 Score=32.58 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHH
Q 001257 740 SVDDIDGSIRNMEHRIAHETLPLKE 764 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgSLSLvE 764 (1113)
...++...|...-..+-.|.++..+
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~ee 373 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDE 373 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 4455666666666667777777654
No 64
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=67.20 E-value=1.5e+02 Score=33.34 Aligned_cols=12 Identities=0% Similarity=0.304 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNM 751 (1113)
Q Consensus 740 SVEEIDarIkrL 751 (1113)
-.++|...+..|
T Consensus 228 E~e~L~~~~~~L 239 (517)
T 4ad8_A 228 EEEGLNTELSRL 239 (517)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 344444444444
No 65
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.05 E-value=13 Score=42.97 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakRA---ERdELiEQLKeLReE~KqlReel~EKIKEIds 727 (1113)
+..+...++.+++.++.+|+++..++..++. ...+|+++++.|+++++.+...+.+...++..
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777777765542 24566667777766666666655555555543
No 66
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.54 E-value=97 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALk 831 (1113)
+.-.|..|..+++.++.....++..+..+.
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444555555555555445554444443
No 67
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.55 E-value=41 Score=39.02 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRS 682 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQk 682 (1113)
.++.+|..|+..+..+.+.
T Consensus 62 dv~~rI~kLkn~L~~~s~s 80 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNK 80 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777553
No 68
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.53 E-value=10 Score=42.68 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT-IRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELka-kRAERdELiEQLKeLReE~KqlReel~EKIKEId 726 (1113)
++..+...++.+++.++..|+++..++.. ...+..+|+++++.|+++.+.+...+.+...++.
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777653 2244566666777776666666665555554443
No 69
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.25 E-value=1e+02 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVK 831 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALk 831 (1113)
+.-.|..|..+++.++.....++..+..+.
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444555555555555555554444443
No 70
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.17 E-value=1e+02 Score=29.33 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 768 LLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
+-.+|..|+++...+ ...+..+.-+|..++..++.+|.+...-- ........+|..|.+.
T Consensus 18 ye~~I~~LR~qid~~-------------~~e~a~l~leldn~~~~~edfk~KyE~E~-------~~r~~~E~di~~lrK~ 77 (119)
T 3ol1_A 18 YEEEMRELRRQVDQL-------------TNDKARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHhhhc
Confidence 345666666665432 11222333444555555555555422211 1222333555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 848 FKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 848 LkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
++.++-.|-.+=.++..|+++..-+.+
T Consensus 78 lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 78 VDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665566666666666666555444
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.82 E-value=55 Score=31.63 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTK 884 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~ir 884 (1113)
+++.|+.++..+++.+.+-...+++++.++. ++++..+.+.-|+.|.+-....|..-|.++-
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~-----------q~~~~lE~I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAE-----------QHKIVMETVPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHccchhhHH
Confidence 5666777766666555554444444443322 2666678899999999999999987776554
No 72
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.78 E-value=15 Score=41.30 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK 867 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRK 867 (1113)
.|..|+..++.+ .+++..++..+..++..+.+++......|.++|+.+..|+.
T Consensus 7 ~l~~el~~~~~~-------~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 7 ALSTEVVHLRQR-------TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555554 44444444455577777777777778888899999988864
No 73
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=61.38 E-value=1.4e+02 Score=31.99 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001257 762 LKEEKQIIREIKQLKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHR-EESE 839 (1113)
Q Consensus 762 LvEEKKLLKEIKQLKKqRKkViA-naa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~D-EIka 839 (1113)
+....+++++|..+=+.|-.+.. |+....++......+-.-...+..+..-.+.++.++..+-.....+...+. ++-.
T Consensus 38 ~~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~ 117 (350)
T 3aco_A 38 IDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFE 117 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH------------
Q 001257 840 KLKRL------------LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR------------ 895 (1113)
Q Consensus 840 EIdEL------------QEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakgdv------------ 895 (1113)
.|..+ .++.+.+.....++...|..+.++..+..+.|++..+....|+....+..-
T Consensus 118 ~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~ 197 (350)
T 3aco_A 118 KIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKL 197 (350)
T ss_dssp HHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccC
Q 001257 896 ----EALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLD 939 (1113)
Q Consensus 896 ----eELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~D 939 (1113)
..+..-+..==..|....+.-..+|..|+.. ++.++..+...+
T Consensus 198 ~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~-~~~~~~~~Q~le 244 (350)
T 3aco_A 198 QDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN-MEQVFEQCQQFE 244 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
No 74
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.72 E-value=80 Score=30.38 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccc-CCCHHHHH
Q 001257 668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM-MKN-AISVDDID 745 (1113)
Q Consensus 668 KIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~K-LRN-AKSVEEID 745 (1113)
++..|+..+..+......++.++.....+-...+..|..-..+++..+..+..++.+|+.-...|-+ .|. +.|+++++
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 4445555555555555555555555444433333333333333344444444555555554444422 222 25777776
Q ss_pred HHH
Q 001257 746 GSI 748 (1113)
Q Consensus 746 arI 748 (1113)
.+.
T Consensus 84 ~k~ 86 (111)
T 2v66_B 84 QRL 86 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.70 E-value=1.6e+02 Score=30.54 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 855 RQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 855 RDEAYEeLkeLRKERDE 871 (1113)
++.+-..++.||++...
T Consensus 156 Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 156 KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.86 E-value=91 Score=28.77 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 679 KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 679 LKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
+.+.-+.|+-.+..+-++|..|-.+|++-++++..++..+..|-.+|..|+..|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444466667777889999999999999999999999999999998888765
No 77
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=59.54 E-value=1.7e+02 Score=30.50 Aligned_cols=177 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001257 762 LKEEKQIIREIKQLKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHR-EESE 839 (1113)
Q Consensus 762 LvEEKKLLKEIKQLKKqRKkViA-naa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~D-EIka 839 (1113)
+....+++++|..+=+.|-.+.. |+....++......+-.-...+..+..-.+.++.++..+-.....+...+. ++-.
T Consensus 38 ~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~ 117 (312)
T 3abh_A 38 IDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFE 117 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------------h
Q 001257 840 KLKRLLGQF------------KAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA----------------S 891 (1113)
Q Consensus 840 EIdELQEEL------------kALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELA----------------a 891 (1113)
.|..+.++. +.+.....++...+..+.+...+..+.|++..+....|+... +
T Consensus 118 ~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~ 197 (312)
T 3abh_A 118 KIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKL 197 (312)
T ss_dssp HHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGG
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccC
Q 001257 892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLD 939 (1113)
Q Consensus 892 kgdveELeelC~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~D 939 (1113)
+.....+..-+..==+.|....+.-..+|..|+. -++.++..+...+
T Consensus 198 ~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~-~~~~~~~~~Q~le 244 (312)
T 3abh_A 198 QDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYME-NMEQVFEQCQQFE 244 (312)
T ss_dssp GTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH
No 78
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=59.22 E-value=1.7e+02 Score=30.22 Aligned_cols=21 Identities=10% Similarity=0.373 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhh
Q 001257 904 NQVERVLELWNNNDEFRKEYVNSN 927 (1113)
Q Consensus 904 ~EVEkFMelWNnDkeFRkDYeKrn 927 (1113)
.+|+.|+... ++.|+.|+.|-
T Consensus 158 ~dv~~Fl~~y---~~~R~~yH~Rr 178 (192)
T 2p22_C 158 DDLDQFIKNY---LDIRTQYHLRR 178 (192)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHH
T ss_pred chHHHHHHHH---HHHHHHHHHHH
Confidence 4555555444 56677776543
No 79
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=58.32 E-value=11 Score=42.41 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 001257 808 FLRKEADSLREN 819 (1113)
Q Consensus 808 aLKKELDELRkK 819 (1113)
.+..+++.|+.+
T Consensus 41 ~~~~~~~~l~~~ 52 (425)
T 2dq3_A 41 EIIKRLEALRSE 52 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 80
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.06 E-value=16 Score=42.19 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 834 HREESEKLKRLLGQFKAADEIR 855 (1113)
Q Consensus 834 ~DEIkaEIdELQEELkALdEkR 855 (1113)
..+++++|..|.+++.++.+++
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 81
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=57.63 E-value=1.2e+02 Score=30.13 Aligned_cols=116 Identities=11% Similarity=0.170 Sum_probs=50.3
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH---HH------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRD---DI------QTI--RASYKEYAEKLEAAISDERSARESLKSKR 722 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAIna---EL------kak--RAERdELiEQLKeLReE~KqlReel~EKI 722 (1113)
|.--++|.-++|-..+..++.-.-.=...|-.|.. ++ +.+ |..-..|..+++.....+.+|...+...+
T Consensus 16 ~~~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 16 FQGAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544333333333222 11 111 33444455555555555555555555555
Q ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 001257 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 723 KEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKk 781 (1113)
++...|...|... +...+..+..-...|.+=|+-+..|+++++..+.
T Consensus 96 ~dR~~L~~~L~~~------------~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 96 EDRRQLARMLVEY------------TQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443322 2233333333333445556666666666655443
No 82
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.50 E-value=1.3e+02 Score=28.63 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1113)
Q Consensus 816 LRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKER 869 (1113)
-+..+...+.....+.++-.++..+|..+...+...-+....+....+.|..+.
T Consensus 60 E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 60 EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444444444443333
No 83
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.49 E-value=1.3e+02 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (1113)
Q Consensus 802 IqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE 840 (1113)
+..+++.|..++..-+.....++...+.|...++++...
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555543
No 84
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=57.46 E-value=2.3e+02 Score=31.33 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=8.6
Q ss_pred ChHHHHHHHHhhhhhHh
Q 001257 916 NDEFRKEYVNSNIRSTL 932 (1113)
Q Consensus 916 DkeFRkDYeKrnl~Sl~ 932 (1113)
-...|-...+.+++...
T Consensus 216 lEe~Ri~~lk~~L~~~~ 232 (406)
T 4dyl_A 216 LHEEMACILKEILQEYL 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.77 E-value=1.2e+02 Score=27.65 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
+..++.||++.-..-..+...+..++..-|.+|=..-.|-.+...+..
T Consensus 30 ~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 30 IMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444555555566666666666555555555544443
No 86
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=56.61 E-value=1.8e+02 Score=29.77 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 816 LRkKLkkLEeklKALkKK~DEIkaEIdELQEE 847 (1113)
+.+.+......+...+++|.....++...+..
T Consensus 128 ~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 128 AQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555554444443
No 87
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.58 E-value=29 Score=40.14 Aligned_cols=29 Identities=3% Similarity=0.024 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
+.++...++.+++.++..|+.+..++..+
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666555443
No 88
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=55.30 E-value=1.9e+02 Score=29.62 Aligned_cols=236 Identities=9% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Q 001257 702 EKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRR 779 (1113)
Q Consensus 702 EQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLR--NAKSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqR 779 (1113)
..++.+..+.+.+...+..+...++.+...-..+. ......+|..++..|..+-+.=.-.+.+-++.|.+.-+|.+-.
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~~f~ 115 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFF 115 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhcccchhHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001257 780 EQISSSIGEHDEVQLAFDQKD--QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK----LKRLLGQFKAADE 853 (1113)
Q Consensus 780 KkViAnaa~rAkIQESidQKE--aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE----IdELQEELkALdE 853 (1113)
..+.....=.......+...+ .--..+..+.+....+..++......+..+......+-.. ...++..+..+..
T Consensus 116 ~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~ 195 (322)
T 1u4q_A 116 RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVD 195 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHh
Q 001257 854 IRQEAYKHWQSLKKQAYDKNQHFWKYKDDT-------KQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNS 926 (1113)
Q Consensus 854 kRDEAYEeLkeLRKERDEkNkeFYqnRR~i-------rKARELAakgdveELeelC~~EVEkFMelWNnDkeFRkDYeKr 926 (1113)
.-+.........+..+..... |+++...+ ..+..+....++..=..-......++..+-..-..++..+..
T Consensus 196 ~w~~L~~~~~~R~~~L~~~~~-~~qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~- 273 (322)
T 1u4q_A 196 HWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVND- 273 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhHhhhhhccCC
Q 001257 927 NIRSTLRRLKTLDG 940 (1113)
Q Consensus 927 nl~Sl~rRqlT~DG 940 (1113)
+...-++++....
T Consensus 274 -l~~~~~~L~~~~~ 286 (322)
T 1u4q_A 274 -VCANGEDLIKKNN 286 (322)
T ss_dssp -HHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCC
No 89
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=54.48 E-value=1.9e+02 Score=29.38 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 821 IKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYK 860 (1113)
Q Consensus 821 kkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYE 860 (1113)
..++.++......|+.+++. |..++..+.+.|...|.
T Consensus 182 ~kae~el~~ak~~ye~ln~~---L~~eLp~l~~~~~~~~~ 218 (251)
T 2fic_A 182 AKAEEELIKAQKVFEEMNVD---LQEELPSLWNSRVGFYV 218 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34455555666666666544 66666666666655554
No 90
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=54.47 E-value=1.9e+02 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=9.2
Q ss_pred ChHHHHHHHHhhhhhHhh
Q 001257 916 NDEFRKEYVNSNIRSTLR 933 (1113)
Q Consensus 916 DkeFRkDYeKrnl~Sl~r 933 (1113)
-...|-...+.+++....
T Consensus 217 lee~r~~~lk~~l~~~~~ 234 (301)
T 2efk_A 217 MDERRATRLGAGYGLLSE 234 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555555443
No 91
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.07 E-value=8.3 Score=45.00 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=43.5
Q ss_pred cCceEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 649 QPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI---RASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 649 ~pFyYfVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkak---RAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
|.|| ++-++||--++..--++|+.+-......|..|..+.+.. -.++.+|..+|..+.++.+..+..+......+
T Consensus 288 H~ff--~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (575)
T 2i1j_A 288 HELY--MRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMI 365 (575)
T ss_dssp HHHH--HHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHH--HHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6776 677888877777666666666555555555443322221 23466666666666666666665555444444
Q ss_pred HHHH
Q 001257 726 DSVQ 729 (1113)
Q Consensus 726 dsLQ 729 (1113)
..|-
T Consensus 366 ~~l~ 369 (575)
T 2i1j_A 366 LRLE 369 (575)
T ss_dssp ----
T ss_pred HHHH
Confidence 3333
No 92
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=53.19 E-value=82 Score=35.52 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKqRKk 781 (1113)
-.++.+..++..|+.++....+ ....=+++++|.+.|+..-..
T Consensus 25 ~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~ 69 (365)
T 1gqe_A 25 LDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT 69 (365)
T ss_dssp TTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999998887765 445557788888888777544
No 93
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=53.06 E-value=40 Score=32.34 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeL 707 (1113)
..+.+.+.+++.+|.++++....+...+..+..+|+=|+.+|+.+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888899888888775
No 94
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.80 E-value=3.5e+02 Score=32.01 Aligned_cols=28 Identities=4% Similarity=0.197 Sum_probs=15.5
Q ss_pred cCceEEecCCCCChHHHHHHHHHHHHHHH
Q 001257 649 QPFYFLVKVPRYDDENLREQIKAAQSKVD 677 (1113)
Q Consensus 649 ~pFyYfVKVPRPDDEeLKAKIdeLqKEIe 677 (1113)
.|.| |.=..-.+-..++.++++-.+.-+
T Consensus 281 ePlY-ISvs~ilt~~elkqrqeee~r~~q 308 (551)
T 2b5u_A 281 NAVY-VSVSDVLSPDQVKQRQDEENRRQQ 308 (551)
T ss_dssp CCEE-EEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CceE-EEEeecCCHHHHHHHHHHHHHHHH
Confidence 4445 444444566777777765544433
No 95
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=52.52 E-value=1e+02 Score=28.30 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869 (1113)
Q Consensus 806 IKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKER 869 (1113)
|..|..|-.+|..-.+.+.-..+.|-++++++..+...|+.++.++...|.+.-.++.+|-.+.
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444555445667777777778888888888888877777777776665543
No 96
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.18 E-value=1.5e+02 Score=27.47 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
++..++..-..+...+.++.+....+..+|..+..+...++..-...+...+.++-+
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444555555555555555555554444444433
No 97
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=51.90 E-value=2.1e+02 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIRQEAYKH 861 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkRDEAYEe 861 (1113)
++..++++|.-++-.|...||....-
T Consensus 128 elERemnsLKPeL~qL~K~rD~yl~w 153 (170)
T 3l4q_C 128 EIDKRMNSLKPDLMQLRKIRDQYLVW 153 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 98
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.09 E-value=66 Score=27.35 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkALdEkRDEAYEeL 862 (1113)
.|..+++.|+.++..|....++++++=..|...|
T Consensus 15 ~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 15 TANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444444443333333333
No 99
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=50.52 E-value=57 Score=29.42 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLE 824 (1113)
++..++.....||+.|..-+-.++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR 30 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLR 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 100
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.17 E-value=24 Score=35.87 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001257 721 KRQEIDSVQS 730 (1113)
Q Consensus 721 KIKEIdsLQs 730 (1113)
+.+|+..|+.
T Consensus 118 L~~Ei~~Lr~ 127 (175)
T 3lay_A 118 VAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443443
No 101
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.08 E-value=68 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIK 822 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkk 822 (1113)
+..++..+..|..+++.|+.++..
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 102
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.75 E-value=9.2 Score=43.03 Aligned_cols=63 Identities=11% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIR---ASYKEYAEKLEAAISDERSARESLKSKRQEIDS 727 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAInaELkakR---AERdELiEQLKeLReE~KqlReel~EKIKEIds 727 (1113)
+..+...++.+++.++..|+++..++..++ .+..+|.++++.|+++.+.+...+.+..+++..
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666665432 234455566666666666665555555444443
No 103
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.33 E-value=1.6e+02 Score=33.51 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.8
Q ss_pred HHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 001257 792 VQLAFDQK-DQIEEKMKFLRKEADSLRENV 820 (1113)
Q Consensus 792 IQESidQK-EaIqEQIKaLKKELDELRkKL 820 (1113)
||..++.. ..+..+|..|+..|+.+...-
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 44444433 244455555555555554443
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.13 E-value=1.7e+02 Score=27.38 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841 (1113)
Q Consensus 808 aLKKELDELRkKLkkLEeklKALkKK~DEIkaEI 841 (1113)
.+...++.+...+..+...+..+.+.+..+...|
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333333333333333333
No 105
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.82 E-value=1.8e+02 Score=27.54 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel 718 (1113)
..+.++.+|..|+.+.......-..|...+..-+..|...-.....+..++..+-..+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999888888888888888888888888887777777777766666543
No 106
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=48.62 E-value=2.5e+02 Score=33.03 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLkeLRKE 868 (1113)
..+++++..+.++..+.+.|...+.+++++
T Consensus 370 SaInslqaqvSa~t~e~k~A~d~l~a~~ke 399 (602)
T 1cii_A 370 SAVNSARNNLSARTNEQKHANDALNALLKE 399 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 107
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.49 E-value=1.4e+02 Score=28.48 Aligned_cols=62 Identities=10% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR----ASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR----AERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
+++..|..|+.+|+.++..+..|-..+.... .....++..|..|..++..+|..+.....++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443332 2233333344444444444444444444433
No 108
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=48.25 E-value=2.3e+02 Score=32.26 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcC
Q 001257 871 DKNQHFWKYKDDTKQANDLASKG 893 (1113)
Q Consensus 871 EkNkeFYqnRR~irKARELAakg 893 (1113)
.....||+...-+.+|.+|-+..
T Consensus 594 srlqhfynscayltqaqelyyen 616 (761)
T 4fye_A 594 SRLQHFYNSCAYLTQAQELYYEN 616 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568999999999999997653
No 109
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=47.89 E-value=4.3e+02 Score=33.20 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 739 KSVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKq 778 (1113)
..+++|++....|+...+.. +..|..+|.+|+++
T Consensus 851 l~~~dL~~~W~~Le~ae~eR------e~~L~~el~Rqe~L 884 (1010)
T 1g8x_A 851 LTPNEIDSTWSALEKAEQEH------AEALRIELKRQKKI 884 (1010)
T ss_dssp CSHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 46889999999998877754 45566666665554
No 110
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.14 E-value=1.7e+02 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD 710 (1113)
Q Consensus 672 LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE 710 (1113)
++.+|.+++..-..+..+++.+++.+..|...|..+...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555444555556666666666666655555443
No 111
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.07 E-value=2.3e+02 Score=28.24 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 672 LqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEId 726 (1113)
+.++|++.-..-.+.+..|.+-...|..|+..|......++..........++.+
T Consensus 73 l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK 127 (152)
T 4fla_A 73 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555666655555555544444444444444443
No 112
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=46.87 E-value=2.5e+02 Score=28.65 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=8.9
Q ss_pred CChHHHHHHHHhhhhhHh
Q 001257 915 NNDEFRKEYVNSNIRSTL 932 (1113)
Q Consensus 915 nDkeFRkDYeKrnl~Sl~ 932 (1113)
.-..-|-...+.+++...
T Consensus 223 ~le~~r~~~lk~~l~~~~ 240 (305)
T 2efl_A 223 EMEERRIVRMGESMKTYA 240 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555443
No 113
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.66 E-value=1.1e+02 Score=28.70 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1113)
Q Consensus 663 EeLKAKIdeLqKEIeELKQkRdAInaELkakR 694 (1113)
..|..+|..++++|++..+.|..|..-++.+.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999988888764
No 114
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=44.87 E-value=49 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001257 836 EESEKLKRLLGQFKAADEIR 855 (1113)
Q Consensus 836 EIkaEIdELQEELkALdEkR 855 (1113)
+++++|..|.+++.++.+++
T Consensus 115 ~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 115
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=44.64 E-value=3.6e+02 Score=29.81 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhHhhhhhccC
Q 001257 918 EFRKEYVNSNIRSTLRRLKTLD 939 (1113)
Q Consensus 918 eFRkDYeKrnl~Sl~rRqlT~D 939 (1113)
.++..|+..-++.++..+...+
T Consensus 196 ~~~~~yy~~~lp~~~d~lQ~lE 217 (406)
T 4dyl_A 196 LHHQHHHQLLLPGLLRSLQDLH 217 (406)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 5666777777777666655544
No 116
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.58 E-value=37 Score=38.56 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001257 809 LRKEADSL 816 (1113)
Q Consensus 809 LKKELDEL 816 (1113)
|..++..+
T Consensus 89 ml~~~~~~ 96 (409)
T 1m1j_C 89 IIEEIIRY 96 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 117
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=44.55 E-value=2.5e+02 Score=31.46 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876 (1113)
Q Consensus 797 dQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeF 876 (1113)
.+-+.+-.+++.+...|+.++..++ .+++..-++++.+-.+|..|.+++..+... ..-..-..|+++||.+-.++
T Consensus 71 ~~a~~La~~~n~~~~~L~~~~~~~n---~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~--~~g~~~ndLlDqRD~ll~eL 145 (463)
T 2d4y_A 71 GKAEGLVNQFKTTDQYLRDQDKQVN---IAIGSSVAQINNYAKQIANLNDQISRMTGV--GAGASPNDLLDQRDQLVSEL 145 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCchHhHHHHHHHHHHH
Confidence 3334555666666666666666433 334444544445445555555444322100 00134456777777766654
Q ss_pred HH
Q 001257 877 WK 878 (1113)
Q Consensus 877 Yq 878 (1113)
=+
T Consensus 146 S~ 147 (463)
T 2d4y_A 146 NK 147 (463)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 118
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=44.37 E-value=1.3e+02 Score=30.78 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 1058 ATAKLREQRRLEEKAKAQEALERKKRIAEKAQTR 1091 (1113)
Q Consensus 1058 ~~ak~kE~kr~ee~~Kak~a~eRKkk~aeK~a~~ 1091 (1113)
++...|.+...++..+.....++|.++++..+..
T Consensus 42 E~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i 75 (233)
T 4efa_E 42 EYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQI 75 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555556666666666655444
No 119
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.20 E-value=1.8e+02 Score=26.30 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHhh
Q 001257 689 DIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756 (1113)
Q Consensus 689 ELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKSVEEIDarIkrLE~RIQ 756 (1113)
.+......|.+|..++..|.++...+... ..++......|.+ .-.+|+..|..|+.++.
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~q----l~eaEe~~~~L~~-----~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGS----MKQLEDKVEELLS-----KNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 33334444455545444444444444333 3333333333322 22366666666666653
No 120
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=44.08 E-value=3.3e+02 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001257 895 REALQHLCVNQVERVLELW 913 (1113)
Q Consensus 895 veELeelC~~EVEkFMelW 913 (1113)
+++++..-..+||.+....
T Consensus 229 ~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 229 GENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 121
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.89 E-value=1e+02 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAE------AATQAVKKLHREESEKLKRLLGQ 847 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLE------eklKALkKK~DEIkaEIdELQEE 847 (1113)
.|..+|..|-.++..|...|.++. ..+.++..++.++..++..+..+
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554422 23444444444444444444444
No 122
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=43.78 E-value=2.6e+02 Score=27.99 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADS 815 (1113)
Q Consensus 804 EQIKaLKKELDE 815 (1113)
+-|..|++|+..
T Consensus 119 ~TiG~LrKELEd 130 (167)
T 4gkw_A 119 ETIGILRKELEN 130 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455555553
No 123
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.28 E-value=2.3e+02 Score=26.82 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 768 IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844 (1113)
Q Consensus 768 LLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdEL 844 (1113)
+.+.+++|......+. -....++++...+.+.++.+|..-..++..|+..+......=..+..++..+..+...|
T Consensus 27 ~e~~k~eL~~~~~~~~--~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 27 LEREKKELEDSLERIS--DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=42.12 E-value=2.5e+02 Score=27.32 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q 001257 857 EAYKHWQSLKK 867 (1113)
Q Consensus 857 EAYEeLkeLRK 867 (1113)
..|+.+++||.
T Consensus 99 dnFE~ik~lr~ 109 (119)
T 3etw_A 99 SDFEKIQALRA 109 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 34666666664
No 125
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.09 E-value=1.5e+02 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 689 DIQTIRASYKEYAEKLEAAISDERSARESLKSK 721 (1113)
Q Consensus 689 ELkakRAERdELiEQLKeLReE~KqlReel~EK 721 (1113)
.....+.+..++..+++.+.+.++.++..+..+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433333
No 126
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=42.05 E-value=2.8e+02 Score=28.17 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHH
Q 001257 739 ISVDDIDGSIRNMEH 753 (1113)
Q Consensus 739 KSVEEIDarIkrLE~ 753 (1113)
.|+..|..+|.-+-.
T Consensus 20 ~Sl~qL~nrla~~~a 34 (158)
T 3tul_A 20 VSLSQLESRLAVWQA 34 (158)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 577777777766553
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.91 E-value=1.2e+02 Score=31.54 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEI 725 (1113)
.++.+++.++..|.++...-..|+.+++.+-.+-..|..+|..++++.+.+...+......+
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 67888999999999999999999999999999999999999999988877666555443333
No 128
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=41.55 E-value=3.4e+02 Score=28.67 Aligned_cols=124 Identities=9% Similarity=0.059 Sum_probs=56.5
Q ss_pred hhHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 001257 789 HDEVQLAFDQK-DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI--RQEAYKHWQSL 865 (1113)
Q Consensus 789 rAkIQESidQK-EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEk--RDEAYEeLkeL 865 (1113)
.++.+..+.+. ..+..-|+.+..+++-+..+ .+.+ ..-.-++|+..+-++.+.--.+.++... -.+........
T Consensus 68 ~~~~~r~~~k~g~~Ll~~L~~f~s~l~T~~~k--aI~D-T~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~~~~l~rve~~ 144 (224)
T 1i4d_A 68 NAETQKLLCKNGETLLGAVNFFVSSINTLVTK--TMED-TLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESA 144 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC------------CHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhH--hccH-HHHHHHHHHHHhHhHHHHHhhHHHhhcccccccchhhHHHH
Confidence 34444443322 34445555556666655543 1111 1222346666666666655555544422 11111222233
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 001257 866 KKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNN 915 (1113)
Q Consensus 866 RKERDEkNkeFYqnRR~irKARELAakgdveELeelC~~EVEkFMelWNn 915 (1113)
...+......|-+.|.+....=+|...+.++-+......=...++..|+.
T Consensus 145 q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~ 194 (224)
T 1i4d_A 145 QATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAG 194 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666655555555555555543333333445566653
No 129
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=40.71 E-value=4.2e+02 Score=32.24 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE---------------SEKLKRLLGQFKAADEIRQEAYKHWQS 864 (1113)
Q Consensus 800 EaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEI---------------kaEIdELQEELkALdEkRDEAYEeLke 864 (1113)
..|..++..|+.....+...++.+++.-+...-+|.++ +.+...|+..+..+...|.+...++..
T Consensus 140 ~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~ 219 (683)
T 1yvl_A 140 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIE 219 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------CHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666665555554444333 223345677777777778777777766
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHhcC-----CHHHHHHHH
Q 001257 865 LKKQAYDKNQHFWK-YKDDTKQANDLASKG-----DREALQHLC 902 (1113)
Q Consensus 865 LRKERDEkNkeFYq-nRR~irKARELAakg-----dveELeelC 902 (1113)
+-...+........ .-..++....+|..| ....||.-|
T Consensus 220 ~l~~~~~lq~~ll~~eL~~WKrrQq~a~~G~p~~~~Ld~lQ~w~ 263 (683)
T 1yvl_A 220 LLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWF 263 (683)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCSCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCchhhhHHHHHHH
Confidence 66655555554332 244455555566544 566666665
No 130
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=40.47 E-value=44 Score=30.14 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 813 LDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
+++|+++++++..+.-...-.+-++.+.+..=..++-++-++-=.+|..|.++|+++...
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444334444445556666666666677777777777888888888776553
No 131
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.36 E-value=5.3e+02 Score=30.55 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCC
Q 001257 320 KLNVGSGKSSDSHPVD 335 (1113)
Q Consensus 320 ~~~~~~~~~~~~~~~~ 335 (1113)
.-|.|+|.|++.+|--
T Consensus 32 ~~~~gsGws~~~~p~g 47 (551)
T 2b5u_A 32 GASDGSGWSSENNPWG 47 (551)
T ss_dssp ----------------
T ss_pred CCCCCCCcccCCCCCC
Confidence 4466777777777754
No 132
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=40.29 E-value=39 Score=31.11 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 813 LDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
+++|+++++++..+.-...-.+.++.+.+..=..++-.+-++-=.+|..|.++|+++...
T Consensus 17 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 17 VADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444334444545566666666666777777777778888888888877654
No 133
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.89 E-value=1.7e+02 Score=26.83 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 835 REESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 835 DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
.++..+|..++..+......|..+-.+|+.|-..+|-+-..+...|.-+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444433
No 134
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=39.52 E-value=70 Score=30.11 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhh
Q 001257 759 TLPLKEEKQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 759 SLSLvEEKKLLKEIKQLKKqRKkViA 784 (1113)
+=...+.+++.+||-+|+.....+++
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~stSa 44 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSISA 44 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccch
Confidence 34467788888999888888766433
No 135
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=39.18 E-value=4.5e+02 Score=29.38 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHhhhhhHhhhhhc
Q 001257 923 YVNSNIRSTLRRLKT 937 (1113)
Q Consensus 923 YeKrnl~Sl~rRqlT 937 (1113)
|.-.+.+.-..++|.
T Consensus 304 yhG~isR~~AE~LL~ 318 (373)
T 3hhm_B 304 NVGSSNRNKAENLLR 318 (373)
T ss_dssp ---------------
T ss_pred cCCCCCHHHHHHHhc
Confidence 666666666666663
No 136
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.11 E-value=96 Score=29.78 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 839 EKLKRLLGQFKAADEIRQEAYKHWQS 864 (1113)
Q Consensus 839 aEIdELQEELkALdEkRDEAYEeLke 864 (1113)
.++..|...+..+-..||=.|.+|+.
T Consensus 25 ~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555557777776654
No 137
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=39.01 E-value=4.5e+02 Score=29.36 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 706 AAISDERSARESLKSKRQEIDSVQSR 731 (1113)
Q Consensus 706 eLReE~KqlReel~EKIKEIdsLQsa 731 (1113)
-|-+.+......++-|+..++...++
T Consensus 144 ~~~~~~~~~~~e~~~k~~a~~af~~~ 169 (373)
T 3hhm_B 144 RLYEEYTRTSQEIQMKRTAIEAFNET 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHH
Confidence 33333334444455555555444433
No 138
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.94 E-value=2.3e+02 Score=25.96 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRSRDAIRD 688 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQkRdAIna 688 (1113)
+-..+..|-.+-.++..-.++|+-
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnv 30 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNI 30 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 139
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=38.75 E-value=2e+02 Score=34.20 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 001257 846 GQFKAADEIRQEA------YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS 891 (1113)
Q Consensus 846 EELkALdEkRDEA------YEeLkeLRKERDEkNkeFYqnRR~irKARELAa 891 (1113)
+++..-+.+.+.| ...|+.|..-....-..+|+.|..+.++.+|..
T Consensus 123 ~eL~~WKrrQq~a~iG~p~~~~LD~lQ~w~e~lae~l~q~rqql~~l~~l~~ 174 (585)
T 1y1u_A 123 DELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQ 174 (585)
T ss_dssp THHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555445544 345566666666777789999999988877543
No 140
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.66 E-value=2.3e+02 Score=25.54 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 832 KLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 832 KK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
.+..++..+|..++..+..-...++.+-.+|+.|-..+|-+-..+...|.-+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344444444444444444444444455555555554444444444433
No 141
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.51 E-value=1.8e+02 Score=33.13 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTRS 682 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQk 682 (1113)
++..+..|+..++++...
T Consensus 36 V~~~l~~LE~~l~elsn~ 53 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNS 53 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 142
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.30 E-value=83 Score=35.26 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708 (1113)
Q Consensus 667 AKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLR 708 (1113)
.+|++++.+|..+++....+...+..+..+..++.+++....
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666666655543
No 143
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=37.25 E-value=1.8e+02 Score=27.50 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 001257 835 REESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG--DREALQHLCVNQVER 908 (1113)
Q Consensus 835 DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakg--dveELeelC~~EVEk 908 (1113)
++++.+|+.|-.++-.|-.+|-.+-..+-.++.....---.--.-+..+.+++.++..+ +-..++.+...-++.
T Consensus 15 ~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~ 90 (114)
T 3rmi_A 15 AYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKE 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33334444444444444455555555555554432211011112233444555555333 334455444444433
No 144
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=37.24 E-value=3.4e+02 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=14.1
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001257 748 IRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777 (1113)
Q Consensus 748 IkrLE~RIQTgSLSLvEEKKLLKEIKQLKK 777 (1113)
+..|..+++.|.-.+.+=...++|-..++.
T Consensus 20 ~~~l~~~~~~g~~~~~el~~f~~eRa~iE~ 49 (276)
T 2v0o_A 20 FDVLYHNMKHGQISTKELADFVRERATIEE 49 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444444444444433
No 145
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=37.17 E-value=5.9e+02 Score=30.16 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=4.3
Q ss_pred CCCcCCCCCCCCc
Q 001257 939 DGRSLGPDEEAPL 951 (1113)
Q Consensus 939 DGR~lnPDEkPpv 951 (1113)
.|+...++..|+.
T Consensus 505 ~~~~~~~~~~~~~ 517 (695)
T 2j69_A 505 TTTTAEEDNSPGW 517 (695)
T ss_dssp -----CCCCCCHH
T ss_pred cccccccccchhH
Confidence 4444555555543
No 146
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=36.73 E-value=2e+02 Score=26.12 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI 854 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEk 854 (1113)
.+...++.|++++..--.+|..+++.++--+|-++.++++|-.+.-+-+-|.++
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~r 68 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQK 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHH
Confidence 344567788888888777788888777777777777888877776665554443
No 147
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.67 E-value=71 Score=36.52 Aligned_cols=92 Identities=9% Similarity=0.160 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS-----------YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI 732 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAE-----------RdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL 732 (1113)
.++..|..|+..++++-+.-..+..-+..++.. -+-+...-+...++...+...+..+-..|..|+..+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566677777777777666655555555554421 133444445555555555555555555555666555
Q ss_pred hhcccCCCHHHHHHHHHHHHHHhhc
Q 001257 733 NMMKNAISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 733 ~KLRNAKSVEEIDarIkrLE~RIQT 757 (1113)
...+ +.+..|...|..|+.+.++
T Consensus 115 ~~~~--~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 115 NSNN--QKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHH--HHHHHHHHHHHHHHTTSCS
T ss_pred HHHH--HHHHHHHHHHHHHHHHhcc
Confidence 4433 3455566666666665543
No 148
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.65 E-value=1.1e+02 Score=25.25 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 001257 808 FLRKEADSLRE 818 (1113)
Q Consensus 808 aLKKELDELRk 818 (1113)
+|+.|++.+++
T Consensus 4 alkselqalkk 14 (48)
T 1g6u_A 4 ALKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 149
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.49 E-value=3.7e+02 Score=31.46 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHhhhH-HHHHHHHHHHHHHHHHH
Q 001257 792 VQLAFDQK-DQIEEKMKFLRKEADSL 816 (1113)
Q Consensus 792 IQESidQK-EaIqEQIKaLKKELDEL 816 (1113)
||..++.. ..+..+|..|+..++.+
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~ 77 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADS 77 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444422 24444455454444444
No 150
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=35.62 E-value=3.2e+02 Score=26.60 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 765 EKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 765 EKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLE 824 (1113)
..++..+...|+...+... ..+.........+..+++.|....+.|+.++..+.
T Consensus 24 n~~l~~eN~~Lk~e~e~l~------~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 24 NIRLRHENKDLKARLENAM------EVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777765421 11111122223444455555555555554444443
No 151
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=35.34 E-value=2.6e+02 Score=27.69 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAIS 740 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KLRNAKS 740 (1113)
+.+....++..+...+....+.-+.....++.+-.+-...-+++..|-.+++..+....+--..++.+-..|.-+
T Consensus 11 eLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~----- 85 (147)
T 2b9c_A 11 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII----- 85 (147)
T ss_dssp CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001257 741 VDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENV 820 (1113)
Q Consensus 741 VEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKL 820 (1113)
...+..+...-+....+|..|..+|..+-+++
T Consensus 86 ------------------------------------------------E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 86 ------------------------------------------------ESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 821 IKAEAATQAVKKLHREESEKLKRLLGQFKA 850 (1113)
Q Consensus 821 kkLEeklKALkKK~DEIkaEIdELQEELkA 850 (1113)
+.++..-...+.+-+.+..+|..|+.++++
T Consensus 118 KsLE~~eekas~rE~~yee~I~~L~~kLkE 147 (147)
T 2b9c_A 118 KSLEDKVEELLSKNYHLENEVARLKKLVGE 147 (147)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHTTSCCCCC-
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHhcC
No 152
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=34.29 E-value=5.5e+02 Score=28.94 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 001257 811 KEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ-HFWKY 879 (1113)
Q Consensus 811 KELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk-eFYqn 879 (1113)
++++.++.++.+...++.+.. +++...|..++.........+-.++..++.|=.+|-...+ .||.|
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y 251 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTK---EKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 251 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444443333333 2223333344444445556677777777777666666443 44443
No 153
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.28 E-value=1.4e+02 Score=26.95 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001257 711 ERSARESLKSKRQEIDSVQSRINMMK 736 (1113)
Q Consensus 711 ~KqlReel~EKIKEIdsLQsaL~KLR 736 (1113)
.+.+...+.+|-.+|..|+..|.+++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555566666777777776665
No 154
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=32.71 E-value=2.5e+02 Score=24.45 Aligned_cols=114 Identities=4% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846 (1113)
Q Consensus 767 KLLKEIKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQE 846 (1113)
++-..+..|..=...+.........+-...........+.+.+..+|..-+..+..+......|-....--......|+.
T Consensus 6 ~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~ 85 (119)
T 3uun_A 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQE 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 847 QFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 847 ELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
.+..+...-+........-+..+......+-.++
T Consensus 86 ~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q~~q 119 (119)
T 3uun_A 86 QMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQK 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 155
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=32.44 E-value=3.5e+02 Score=30.31 Aligned_cols=83 Identities=14% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccc-CCCHHHHHHHHHHHHHH-hhcCCCChHHH-HHHHH
Q 001257 695 ASYKEYAEKLEAAISDERSARESLKSKRQEID-SVQSRINMMKN-AISVDDIDGSIRNMEHR-IAHETLPLKEE-KQIIR 770 (1113)
Q Consensus 695 AERdELiEQLKeLReE~KqlReel~EKIKEId-sLQsaL~KLRN-AKSVEEIDarIkrLE~R-IQTgSLSLvEE-KKLLK 770 (1113)
..|..+.++.+.|-..++.....+...+..++ .|...+..+.. .+.+.+|+.+|...+-. .....-.|.++ .++|.
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~ 143 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVS 143 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHH
Confidence 44555555555555555544444444444443 22222222211 13445555666554321 11223345555 35666
Q ss_pred HHHHHHH
Q 001257 771 EIKQLKQ 777 (1113)
Q Consensus 771 EIKQLKK 777 (1113)
|+++|=.
T Consensus 144 eLS~~v~ 150 (463)
T 2d4y_A 144 ELNKIVG 150 (463)
T ss_dssp HHHHHSC
T ss_pred HHHhhcC
Confidence 6666543
No 156
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.30 E-value=1.9e+02 Score=26.67 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK 849 (1113)
Q Consensus 810 KKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELk 849 (1113)
..|+..+|.....+..++++..++..++..++..|.+++.
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333344444444444444444444433
No 157
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.28 E-value=2.9e+02 Score=28.77 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=43.0
Q ss_pred ecCCC-CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 001257 655 VKVPR-YDDEN-LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER--------SARESLKSKRQE 724 (1113)
Q Consensus 655 VKVPR-PDDEe-LKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~K--------qlReel~EKIKE 724 (1113)
+.+.+ +|... +..-++-+-..+..+.+.-..+..+...+....+.+.++++.+..... .+...+++|...
T Consensus 111 i~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~K 190 (213)
T 1ik9_A 111 FNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTK 190 (213)
T ss_dssp EECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44443 44433 345555555555555555555666666666777777777776655443 444456666666
Q ss_pred HHHHHH
Q 001257 725 IDSVQS 730 (1113)
Q Consensus 725 IdsLQs 730 (1113)
|+.|+.
T Consensus 191 IR~lq~ 196 (213)
T 1ik9_A 191 IRSLHN 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 158
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.10 E-value=3.2e+02 Score=25.51 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 674 SKVDEKTRSRDAIRDDIQTI------RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 674 KEIeELKQkRdAInaELkak------RAERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
.+|..+++.|-.+.+..-+. ..++..|..+...|..+...++.....-..|++.++..+..|
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777666655443 255666677777777777777777777777777777665544
No 159
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.06 E-value=2.9e+02 Score=24.98 Aligned_cols=16 Identities=0% Similarity=0.304 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLREN 819 (1113)
Q Consensus 804 EQIKaLKKELDELRkK 819 (1113)
.++..+..++..+...
T Consensus 20 ~~~~~l~~q~~~l~~~ 35 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLE 35 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 160
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.88 E-value=54 Score=32.96 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD 871 (1113)
Q Consensus 807 KaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDE 871 (1113)
+.++..++..|..+..++..+.++..++.++..+...|.++.+-..+.|+..-..+.+.|.....
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444444455555555555444455555555555555554443
No 161
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.55 E-value=81 Score=31.31 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 001257 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK 892 (1113)
Q Consensus 834 ~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAak 892 (1113)
+..+..++..|...+..-...|..|=.....+-.+......++|. .|..|.+.
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe------EAN~MVa~ 93 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNLVAD 93 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 334556666677777777778888888888888888888888773 45555443
No 162
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=31.55 E-value=1.8e+02 Score=32.76 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHH
Q 001257 742 DDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQ 781 (1113)
Q Consensus 742 EEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKqRKk 781 (1113)
+.+..++..|+.++....+ ....=+++++|.+.|+..-..
T Consensus 6 ~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~ 47 (354)
T 3d5a_X 6 DRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGL 47 (354)
T ss_dssp HHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888777654 344447778888888777544
No 163
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=31.20 E-value=5.1e+02 Score=27.59 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHhCChHHHHH-------HHHhhhhhHhhhhhc
Q 001257 907 ERVLELWNNNDEFRKE-------YVNSNIRSTLRRLKT 937 (1113)
Q Consensus 907 EkFMelWNnDkeFRkD-------YeKrnl~Sl~rRqlT 937 (1113)
|-|+.+|.+-..|+-. |.-++.+..+.+.+.
T Consensus 298 e~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr 335 (339)
T 1sig_A 298 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 335 (339)
T ss_dssp HHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 5567777665555432 666666666655543
No 164
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.00 E-value=1.5e+02 Score=26.76 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFK 849 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELk 849 (1113)
++.+.+++++....|..|+.+++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555544443
No 165
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=30.15 E-value=5.9e+02 Score=31.03 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHhhhhhHhhh
Q 001257 897 ALQHLCVNQVERVLELWNNND-----EFRKEYVNSNIRSTLRR 934 (1113)
Q Consensus 897 ELeelC~~EVEkFMelWNnDk-----eFRkDYeKrnl~Sl~rR 934 (1113)
.++.++..=+-||+=+...++ ++=-+|...++....-+
T Consensus 245 p~~~L~~P~~~RFrYHF~g~k~TdKpEwyf~Fl~~~lq~~L~~ 287 (706)
T 3fhn_A 245 NFKSLANNFNVRFTYHFHATSSSSKIETYFQFLNDYLAENLYK 287 (706)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhcCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 678888888888877777774 33335555555555444
No 166
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.14 E-value=3.4e+02 Score=26.30 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred CceEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 650 PFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQ-----TIRASYKEYAEKLEAAISDERSARESLKSKRQE 724 (1113)
Q Consensus 650 pFyYfVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELk-----akRAERdELiEQLKeLReE~KqlReel~EKIKE 724 (1113)
||| ..+..+...-..++.+-.....+..... .+..-+++|..-|..|..++..+...+.---+.
T Consensus 28 PF~-----------~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 28 PFF-----------VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp CHH-----------HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcH-----------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHHH---HHHHhhcccCCCHHHHHHHHHHHHHHhhc
Q 001257 725 IDSV---QSRINMMKNAISVDDIDGSIRNMEHRIAH 757 (1113)
Q Consensus 725 IdsL---QsaL~KLRNAKSVEEIDarIkrLE~RIQT 757 (1113)
-... ...|.+-| .-+.++..+|..|+..|.+
T Consensus 97 p~kF~l~~~Ei~~Rr--~fV~~~r~~I~~mk~~l~~ 130 (130)
T 4dnd_A 97 PGKFKLPAGDLQERK--VFVERMREAVQEMKDHMVS 130 (130)
T ss_dssp HHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCHHHHHHHH--HHHHHHHHHHHHHHHHhhC
No 167
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.91 E-value=2.2e+02 Score=29.99 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT 692 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELka 692 (1113)
.|.+.+...+..++.++..++.......+.+..
T Consensus 63 ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 63 IDSTTQINTLNTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888777666555444444443
No 168
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=27.44 E-value=4.4e+02 Score=27.54 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 827 TQAVKKLHREESEKLKRLLGQFKAAD 852 (1113)
Q Consensus 827 lKALkKK~DEIkaEIdELQEELkALd 852 (1113)
+++|++.|.++..+++...+.++.+.
T Consensus 164 i~~vN~~y~~~~~~FN~yTk~yN~~~ 189 (199)
T 2ap3_A 164 SKAIEQNYKKLKEVSDKYTKVLNKVQ 189 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 169
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.15 E-value=1.7e+02 Score=26.06 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862 (1113)
Q Consensus 829 ALkKK~DEIkaEIdELQEELkALdEkRDEAYEeL 862 (1113)
++++|+..++.+...+...+..+-..||=.|.++
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KL 39 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKL 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333443344444444444444444444
No 170
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.01 E-value=4.3e+02 Score=25.46 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=18.4
Q ss_pred cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 785 SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 785 naa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLE 824 (1113)
||...+.+. +...+.|+..|+..-.+|..-+.++.+.+
T Consensus 25 ~~~~~~~~t--M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 25 YFQGIDPFT--MSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp CCCCCCSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 44444555555555555555555544444
No 171
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.96 E-value=4.1e+02 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001257 855 RQEAYKHWQSLKKQAYDKNQHFWKYKDDTK 884 (1113)
Q Consensus 855 RDEAYEeLkeLRKERDEkNkeFYqnRR~ir 884 (1113)
.....+.+.-|+.+.+-....|..-|.++-
T Consensus 35 ~~~~~E~i~vLk~Qv~IY~~DF~aERadRE 64 (94)
T 3jsv_C 35 HKIVMETVPVLKAQADIYKADFQAERHARE 64 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777887777778876665544
No 172
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.75 E-value=5.2e+02 Score=26.29 Aligned_cols=28 Identities=14% Similarity=-0.069 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001257 853 EIRQEAYKHWQSLKKQAYDKNQHFWKYK 880 (1113)
Q Consensus 853 EkRDEAYEeLkeLRKERDEkNkeFYqnR 880 (1113)
..++.+-....++|...++..+.-...+
T Consensus 107 a~~~q~~~d~~~~~~~~~kA~~A~~~a~ 134 (158)
T 3tul_A 107 AAVEQAGKEATEAKEALDKATDATVKAG 134 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444333333
No 173
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.62 E-value=2e+02 Score=28.55 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (1113)
Q Consensus 804 EQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE 840 (1113)
..+..|..++..-+.....++...+.|...++++.+.
T Consensus 46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555455555555555555555544
No 174
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.55 E-value=1.9e+02 Score=33.17 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001257 767 QIIREIKQLK 776 (1113)
Q Consensus 767 KLLKEIKQLK 776 (1113)
.+|.-|+..-
T Consensus 59 ~~v~~ik~~~ 68 (411)
T 3ghg_C 59 QLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3444444433
No 175
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=26.54 E-value=9e+02 Score=28.99 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhcC-----CHHHHHHHH
Q 001257 842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK-YKDDTKQANDLASKG-----DREALQHLC 902 (1113)
Q Consensus 842 dELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYq-nRR~irKARELAakg-----dveELeelC 902 (1113)
..|+..+..+...|.+...++.++-...+........ .-..++....+|..| ....||.-|
T Consensus 75 ~~l~~~~~~l~~~R~e~~~k~~~~l~~~~~lq~~ll~~EL~eWKrrQq~a~iG~p~~~~LD~lQ~w~ 141 (596)
T 1bg1_A 75 QQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWI 141 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcccchHHHHHHH
Confidence 3356666666666766666666555555554443332 244444455566544 555666555
No 176
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.27 E-value=6.2e+02 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001257 683 RDAIRDDIQTIRASY 697 (1113)
Q Consensus 683 RdAInaELkakRAER 697 (1113)
|..|...+..+|.+-
T Consensus 39 ~~~l~~~le~lr~~L 53 (273)
T 3s84_A 39 SQKIGDNLRELQQRL 53 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555443
No 177
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.27 E-value=2.4e+02 Score=27.57 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR--ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM 735 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR--AERdELiEQLKeLReE~KqlReel~EKIKEIdsLQsaL~KL 735 (1113)
..++.-+.+.+.+.+..+.+..|.+.+..+. +..+-+..+.+.|..+++.++..++..+++...+.....++
T Consensus 31 qeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 31 EERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 178
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=26.16 E-value=8.9e+02 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=8.0
Q ss_pred HHHHHHHhCChHHHHHHH
Q 001257 907 ERVLELWNNNDEFRKEYV 924 (1113)
Q Consensus 907 EkFMelWNnDkeFRkDYe 924 (1113)
+.|+++.++-.+=++=|-
T Consensus 667 ~~y~el~~~l~eG~~FY~ 684 (704)
T 2xs1_A 667 DNFVELVANLKEGTKFYN 684 (704)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 344444444444444343
No 179
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=26.10 E-value=4.7e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001257 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887 (1113)
Q Consensus 843 ELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKAR 887 (1113)
.++..+..|....+.....+..-+..+.... .|+.+.+.+.++.
T Consensus 89 ~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~l-~l~~F~~d~~~~~ 132 (218)
T 3fb2_A 89 EIKQKLDILDQERADLEKAWVQRRMMLDQCL-ELQLFHRDCEQAE 132 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444555555555555444444444444333 2344444444433
No 180
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=26.01 E-value=5.1e+02 Score=25.98 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.0
Q ss_pred CChHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQS 674 (1113)
Q Consensus 660 PDDEeLKAKIdeLqK 674 (1113)
+..++|+.++..|..
T Consensus 43 ~SleEIqkKLeAAEE 57 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEE 57 (143)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 568899999998844
No 181
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=25.73 E-value=5.7e+02 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKH 861 (1113)
Q Consensus 820 LkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEe 861 (1113)
+-+++.++......|+.++.. |.+++-.+...|...|..
T Consensus 162 l~kae~el~~a~~~ye~lN~~---L~~eLP~l~~~~~~~~~~ 200 (237)
T 4avm_A 162 TAKAEEEFNKAQTVFEDLNQE---LLEELPILYNSRIGCYVT 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455566666677777766 666777777666665544
No 182
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.28 E-value=3.4e+02 Score=28.85 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=49.0
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722 (1113)
Q Consensus 654 fVKVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKI 722 (1113)
-.++.+.+++.++.-|. ..+..++.+-..+...++..+.+++.+.++|...|.+..++|+..+...
T Consensus 154 SL~f~~asde~Ik~yLa---~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 154 TLAFRPGNDSVVKQFLA---FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp EEEEEECCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677778888877665 4555666777778888888888888888888888877777776555443
No 183
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=25.17 E-value=5.7e+02 Score=26.25 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=16.1
Q ss_pred HHHHhCChHHHHHHHHhhhhhHhhh
Q 001257 910 LELWNNNDEFRKEYVNSNIRSTLRR 934 (1113)
Q Consensus 910 MelWNnDkeFRkDYeKrnl~Sl~rR 934 (1113)
+...-.-..-|-.+.|.+|++...-
T Consensus 215 ~~~~Q~lee~Ri~~lk~~l~~~~~~ 239 (290)
T 3i2w_A 215 FEKCQTFEKTRLQFFKEILFNVHSC 239 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344677888888888877643
No 184
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=25.16 E-value=5.3e+02 Score=25.84 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcc
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS----YKEYAEKLEAAISDERSARESLKSKRQEIDS---VQSRINMMK 736 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAE----RdELiEQLKeLReE~KqlReel~EKIKEIds---LQsaL~KLR 736 (1113)
.+-++...+..+|.........|....+.+... ...+..++..|..+-..+......+...+.. +...+.+++
T Consensus 52 ~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~ 131 (250)
T 1quu_A 52 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLH 131 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566667666666555666555554321 2344444555555544444444444444432 222222221
Q ss_pred --cCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHH
Q 001257 737 --NAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 737 --NAKSVEEIDarIkrLE~RIQTgSL--SLvEEKKLLKEIKQLKKq 778 (1113)
.+...+++..=|...+..+.+..+ ++..=..++++++.|...
T Consensus 132 ~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~ 177 (250)
T 1quu_A 132 LEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKAT 177 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 235677777777777777766543 344445555555555533
No 185
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.89 E-value=3.4e+02 Score=28.32 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693 (1113)
Q Consensus 661 DDEeLKAKIdeLqKEIeELKQkRdAInaELkak 693 (1113)
|.+.+..++..++.++..++.......+.+...
T Consensus 63 d~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a 95 (341)
T 3fpp_A 63 DPEQAENQIKEVEATLMELRAQRQQAEAELKLA 95 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888776665555544444433
No 186
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.73 E-value=3.2e+02 Score=23.21 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 001257 833 LHREESEKLKRLLG 846 (1113)
Q Consensus 833 K~DEIkaEIdELQE 846 (1113)
+++.|+.+++.|..
T Consensus 12 ~V~~L~~kVdqLss 25 (52)
T 1jcd_A 12 DAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 187
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.71 E-value=5.5e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840 (1113)
Q Consensus 799 KEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaE 840 (1113)
+..+..+++.|..++..-+.....++...+.|...++++.+.
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777776666777777777777776655
No 188
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=24.68 E-value=2.5e+02 Score=25.75 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Q 001257 834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG--DREALQHLCVNQVERVLE 911 (1113)
Q Consensus 834 ~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFYqnRR~irKARELAakg--dveELeelC~~EVEkFMe 911 (1113)
+++++.+|+.+-.++-.|-.+|-..-..+..++.....---.--.-+..+.+++.+|..+ +-..++.+...-++.++.
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~~ 86 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVL 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 001257 912 L 912 (1113)
Q Consensus 912 l 912 (1113)
+
T Consensus 87 ~ 87 (109)
T 1ecm_A 87 T 87 (109)
T ss_dssp H
T ss_pred H
No 189
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=24.59 E-value=1.4e+02 Score=30.35 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001257 858 AYKHWQSLKKQAYDKNQHFWKYKDDTK 884 (1113)
Q Consensus 858 AYEeLkeLRKERDEkNkeFYqnRR~ir 884 (1113)
+..++.+|..++.++..-+|+.|+.+-
T Consensus 19 ~~~e~~~le~ky~~~~~p~y~kR~~iI 45 (193)
T 3kyp_A 19 CAHEQMNIQKQYDEKKKPLFEKRDEII 45 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 344455555666666666666665554
No 190
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.27 E-value=2e+02 Score=33.52 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001257 766 KQIIREIKQLKQRRE 780 (1113)
Q Consensus 766 KKLLKEIKQLKKqRK 780 (1113)
+.+|+-|+..-+.+.
T Consensus 115 ~~~v~~ik~s~~~~q 129 (461)
T 3ghg_B 115 FQYMYLLKDLWQKRQ 129 (461)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc
Confidence 344555554444443
No 191
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.02 E-value=2.9e+02 Score=23.23 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ 863 (1113)
Q Consensus 812 ELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLk 863 (1113)
.++.|...+..++.....|..+++.-+.-|+.|...++.+......+..++.
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~ 61 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555455555555555555554544444443
No 192
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.71 E-value=7.5e+02 Score=27.11 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 832 KLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877 (1113)
Q Consensus 832 KK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNkeFY 877 (1113)
++...++-.+-.|++.|..-..+.. .++++|-.+..+.|..+-
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 418 AQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3333344444445544443333321 345555555555554333
No 193
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.25 E-value=4.1e+02 Score=25.90 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 665 LREQIKAAQSKVDEKTR 681 (1113)
Q Consensus 665 LKAKIdeLqKEIeELKQ 681 (1113)
+...+..|..+++.+.+
T Consensus 7 i~~~l~~Leae~q~L~~ 23 (119)
T 3etw_A 7 LVGELQALDAEYQNLAN 23 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554443
No 194
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.73 E-value=1.1e+02 Score=35.39 Aligned_cols=31 Identities=6% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR 694 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakR 694 (1113)
.++..|..|+..+.++.+.-..+..-+..++
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik 122 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQYMYLLK 122 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4666666666666666655555444444443
No 195
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=22.60 E-value=2.4e+02 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=32.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAA 707 (1113)
Q Consensus 656 KVPRPDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeL 707 (1113)
.+.|...-.++.++.-++.=+.-|+.+|++|..+...+..+-.+++.++...
T Consensus 13 ~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~ 64 (217)
T 3aon_A 13 NPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKE 64 (217)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667777777777777777777777766666655555555555443
No 196
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.33 E-value=1.4e+02 Score=25.16 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 001257 808 FLRKEADSLREN 819 (1113)
Q Consensus 808 aLKKELDELRkK 819 (1113)
+|+.|..+||.+
T Consensus 23 aLk~E~~eLk~k 34 (53)
T 2yy0_A 23 LLRLELAEMKEK 34 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 197
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.33 E-value=1.8e+02 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLRENVIKAE 824 (1113)
Q Consensus 801 aIqEQIKaLKKELDELRkKLkkLE 824 (1113)
.|+.+|+.|+.+++.+..++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544443
No 198
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.22 E-value=3.9e+02 Score=25.65 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 772 IKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA 851 (1113)
Q Consensus 772 IKQLKKqRKkViAnaa~rAkIQESidQKEaIqEQIKaLKKELDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkAL 851 (1113)
+..|...-++...-|-.-|++. ..+.++.=+|..|+..+.++...+..+.-+.++-.+.++.++-.+..|+.++..+
T Consensus 1 ~dsL~EvEEKyrKAMVsnAQLD---NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 1 MDSLAEVEEKYKKAMVSNAQLD---NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp -------CCTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001257 852 DEIRQE 857 (1113)
Q Consensus 852 dEkRDE 857 (1113)
.....+
T Consensus 78 k~~L~q 83 (103)
T 4h22_A 78 KEALKQ 83 (103)
T ss_dssp HHHHHT
T ss_pred HHHHHH
No 199
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=22.01 E-value=5.3e+02 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001257 740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQR 778 (1113)
Q Consensus 740 SVEEIDarIkrLE~RIQTgSLSLvEEKKLLKEIKQLKKq 778 (1113)
+.-+||+.|..|+.. ||++..+|++.-+.
T Consensus 22 ~~R~LdR~~~kle~e----------Ekk~~~~IKkaakk 50 (218)
T 3frt_A 22 EMRVVDRQIRDIQRE----------EEKVKRSVKDAAKK 50 (218)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 455778888888865 88888888876544
No 200
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=21.81 E-value=5.3e+02 Score=24.59 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ 874 (1113)
Q Consensus 813 LDELRkKLkkLEeklKALkKK~DEIkaEIdELQEELkALdEkRDEAYEeLkeLRKERDEkNk 874 (1113)
+..|--.+...+..+=..-...++.+..+..||.++..+.+.| ..|++||.++.++..
T Consensus 36 VQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR----~ALdaLR~eH~~Klr 93 (98)
T 3f1i_H 36 VLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDAR----GALSALREEHREKLR 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
No 201
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=21.73 E-value=1.6e+02 Score=26.74 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS 696 (1113)
Q Consensus 660 PDDEeLKAKIdeLqKEIeELKQkRdAInaELkakRAE 696 (1113)
++...+..+|+.++.+|-++-.+|..+..++-.+|..
T Consensus 12 ~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 12 PEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888777776643
No 202
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=21.43 E-value=2.5e+02 Score=29.31 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001257 858 AYKHWQSLKKQAYDKNQHFWKYKDDT 883 (1113)
Q Consensus 858 AYEeLkeLRKERDEkNkeFYqnRR~i 883 (1113)
++.++.+|..++.++..-+|+.|+.+
T Consensus 49 ~~~ev~~lE~ky~~~~~Ply~kR~eI 74 (225)
T 2e50_A 49 ASEEILKVEQKYNKLRQPFFQKRSEL 74 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 34444445555555555555555444
No 203
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.43 E-value=4.7e+02 Score=23.88 Aligned_cols=22 Identities=5% Similarity=0.231 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001257 683 RDAIRDDIQTIRASYKEYAEKL 704 (1113)
Q Consensus 683 RdAInaELkakRAERdELiEQL 704 (1113)
|.+...++...-.+-.+|+.+|
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qM 53 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQM 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444333
No 204
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.35 E-value=2.2e+02 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001257 763 KEEKQIIREIKQLKQRREQISS 784 (1113)
Q Consensus 763 vEEKKLLKEIKQLKKqRKkViA 784 (1113)
.+.+++.+||.+|+.....+++
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSa 27 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISA 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 4668888888888888765433
No 205
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.27 E-value=5.1e+02 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001257 853 EIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 853 EkRDEAYEeLkeLRKERDEk 872 (1113)
.+..++-.+|..|+.++.+.
T Consensus 62 ~~L~e~~~kid~L~~el~K~ 81 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKY 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544443
No 206
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.12 E-value=5e+02 Score=24.09 Aligned_cols=7 Identities=43% Similarity=0.909 Sum_probs=2.9
Q ss_pred HhhhHHH
Q 001257 795 AFDQKDQ 801 (1113)
Q Consensus 795 SidQKEa 801 (1113)
+|+.+++
T Consensus 21 aFgKrEa 27 (84)
T 1gmj_A 21 AFGKREQ 27 (84)
T ss_dssp HHHHHHH
T ss_pred CcccHHH
Confidence 3444443
No 207
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.11 E-value=4.8e+02 Score=23.87 Aligned_cols=59 Identities=20% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID 726 (1113)
Q Consensus 664 eLKAKIdeLqKEIeELKQkRdAInaELkakRAERdELiEQLKeLReE~KqlReel~EKIKEId 726 (1113)
.+++++.+.+.+++.++. ...+|..-+.+-..++.+|+.=.+.....-..+..|.+||.
T Consensus 15 rl~E~~~q~qaEl~sLrr----T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKR----TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.04 E-value=4.1e+02 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=8.5
Q ss_pred cCceEEecCCCCC
Q 001257 649 QPFYFLVKVPRYD 661 (1113)
Q Consensus 649 ~pFyYfVKVPRPD 661 (1113)
..|+|+..+..=+
T Consensus 75 ~FFLY~~~i~e~d 87 (228)
T 3q0x_A 75 LFFLHTLEVSEED 87 (228)
T ss_dssp TTCEEEEEEETTT
T ss_pred CceeEEEEeCHHH
Confidence 5677777776633
No 209
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.96 E-value=4.8e+02 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001257 801 QIEEKMKFLRKEADSLR 817 (1113)
Q Consensus 801 aIqEQIKaLKKELDELR 817 (1113)
.+..+|..|..+++.-+
T Consensus 44 ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 210
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.86 E-value=1.1e+03 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhhccCCCcCCCCCCCCcc
Q 001257 902 CVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLI 952 (1113)
Q Consensus 902 C~~EVEkFMelWNnDkeFRkDYeKrnl~Sl~rRqlT~DGR~lnPDEkPpvi 952 (1113)
...++.++|+.|.+++ +.||++--|--++||.
T Consensus 95 ~~~~~~k~lae~ek~k-------------------~eDGyLs~~~aQ~Lvf 126 (497)
T 3iox_A 95 EQTSIKAALAELEKHK-------------------NEDGNLTEPSAQNLVY 126 (497)
T ss_dssp HHHHHHHHHHHHTTTT-------------------TSTTSBSSCCCBCEEC
T ss_pred HHHHHHHHHHHHhhcc-------------------ccCCCccchhccccee
Confidence 3566778888887664 6799999999998873
No 211
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=20.81 E-value=1.1e+03 Score=28.30 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001257 844 LLGQFKAADEIRQEAYKHWQSLKKQAYDK 872 (1113)
Q Consensus 844 LQEELkALdEkRDEAYEeLkeLRKERDEk 872 (1113)
++..+..+...|.+...++..+-...+..
T Consensus 64 l~~~~~~l~~~R~~~~~~~~~~~~~~~~l 92 (575)
T 1bf5_A 64 LKKMYLMLDNKRKEVVHKIIELLNVTELT 92 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444444433333
No 212
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.60 E-value=1.1e+03 Score=27.80 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=6.5
Q ss_pred cccCCCCCCCccccccCcccccCCCCCccccc
Q 001257 281 ALNVSDTTAKPDVDFRDSVVTESSPSGEVDDM 312 (1113)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1113)
..+++|.--+.+++|--|+.++-+-...+|++
T Consensus 30 ~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGL 61 (514)
T 2inr_A 30 DLSLEDVLGDRFGRYSKYIIQERALPDVRDGL 61 (514)
T ss_dssp -----------------------CCCBTTTCC
T ss_pred eccHHHHHHHHHHHHHHHHhhcccCCchhhCC
Confidence 36788899999999999998877766777875
Done!