BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001258
(1113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 196 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 254 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 300 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 198 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 256 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 302 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 930 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 983
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 131 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
+C+K + + + P++ FS + + + A LD T+
Sbjct: 178 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 170 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 228 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 274 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 188 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 221
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 179 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 237 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 283 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 249 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 295 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 184 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 175 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 233 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 279 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 930 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 983
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
+C+K + + + P++ FS + + + A LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 173 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 231 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 277 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016
C+K + + + P++ FS + + + A LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 932
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 460 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 507
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 508 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 541
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG A V++++ +G ++ Q L H VN +AF P+ Q
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
G + +T G GV F +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 602 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 644
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 399
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W +
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLWNRN 456
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
G+ T+ + R V F +A DD ++K W
Sbjct: 457 -----------GQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 494
Query: 602 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 644
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 495 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 39/246 (15%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 71
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ + DDKT+K+W+ NG GH + V V + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 128
Query: 542 N-LGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLGV 579
L + + W +A+S DG +T G GV
Sbjct: 129 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 638
F +A DD ++K W+ + QLL ++ G +S R + F+ DG +A +++
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASD 241
Query: 639 DNGIKI 644
D +K+
Sbjct: 242 DKTVKL 247
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W +
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWNRN 210
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
G+ T+ + R V F +A DD ++K W
Sbjct: 211 -----------GQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 248
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
+ + QLL ++ G + + F DG +A +++D +K+
Sbjct: 249 NRNG-QLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 522
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 455 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
V++ ++AH V +AFS P+ Q + + DDKT+K+W+ NG GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 566
V + Q I S + D +K W + L + + + R +A+S DG
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 567 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 611
+T G GV F +A DD ++K W+ + QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
+ G + + F+ DG +A +++D +K+
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+ IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + + V F D + + + ++
Sbjct: 496 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
SS + FS D Q + + D TV ++
Sbjct: 547 GHSSS--VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW- 989
+G + LQ TG H ++ + I + + VK W
Sbjct: 250 RNG------QLLQTLTG-------------HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 990 -------VPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
S+ + FS D Q + + D TV ++
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + + V F D + + + ++
Sbjct: 455 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
SS + FS D Q + + D TV ++
Sbjct: 506 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + V F D + + + ++
Sbjct: 168 RNG------QLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC------RINPSAYLPAG 1042
SS + FS D Q + + D TV +++ L+ +N A+ P G
Sbjct: 219 GHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + V F D + + + ++
Sbjct: 414 RNG------QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
SS + FS D Q + + D TV ++
Sbjct: 465 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 494
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + + V F D + + + ++
Sbjct: 86 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
SS + FS D Q + + D TV ++
Sbjct: 137 GHSSS--VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 931 SDGWEKQKNRFLQIPTGRTPT 951
+G + LQ TG + +
Sbjct: 332 RNG------QHLQTLTGHSSS 346
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D IA DD +++++N +++ L GHS + G+AFS + S+ D + +W+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+G + LQ TG + + + V F D + + + ++
Sbjct: 373 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1022
SS + FS D Q + + D TV ++
Sbjct: 424 GHSSS--VWGVAFSPDDQTIASASDDKTVKLW 453
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 931 SDGWEKQK 938
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 527 FSTALDGKIKAW 538
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 931 SDGWEKQK 938
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 527 FSTALDGKIKAW 538
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 557
+NI++I + + D + W + G DY E P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 558 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 596
S G G +L V +D + R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 597 SIKFWDMDSVQLLTSIDADGGLPASPRI 624
+I+ WD+++ +L+ ++ L R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
D+ KT + N+ +DFHP + +L G + LW ++ +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 527 FSTALDGKIKAW 538
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAW 538
+NI++I + + D + W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
V++ D T+ VWD YI GH +YS H+ + S + D I+ W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLE 340
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKF 600
N + Y+ G G + S ++FL +A D SI+
Sbjct: 341 N--------------GELXYTLQGHTALVGLLRLS----------DKFLVSAAADGSIRG 376
Query: 601 WDMD 604
WD +
Sbjct: 377 WDAN 380
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
D+ KT + N+ +DFHP + +L G + +W ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 527 FSTALDGKIKAW 538
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 397 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 455
R+ VWD+ + + L+ LV +VN V D A +++++ + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
R ++ H G+ + + + V++ D TI++WD GA + EGHE V +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
+K I S A DGKIK W +L + +D AP GT + +
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 603
S V + + + +++ D +I WD
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 482 VITCGDDKTIKVWDA---TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
++TC D++I VWD T+ + + GH A V V + ++I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVW 281
Query: 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS 597
+ + RT G KR + +Q+ ++R + +G D +
Sbjct: 282 --------------------NTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNT 317
Query: 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
I+ WD++ L ++ L IRF+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC--IRFD 345
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW------LYD 541
D TIK+WD + I GH V +C + E + I + + D ++ W + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLN 207
Query: 542 NLGSRVDYEAPGRW-------CTT--------MAYSADGT--RTYQGFRKRSLGVVQFDT 584
L + R+ C+ MA D T R G R ++ VV FD
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD- 265
Query: 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
++A D +IK W+ + + + +++ A + R L+ ++DN I++
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRL 320
Query: 645 LATSDG--IRLLRTFENLA 661
G +R+L E L
Sbjct: 321 WDIECGACLRVLEGHEELV 339
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
SIK WD++ Q + S + P + ++ DG L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 635 VSTNDNGIKILATSDGIR 652
DN +++ + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 389 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 444
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 146 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 197
Query: 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 198 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 252
Query: 505 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 551
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 306
Query: 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
P CT++A+SADG + G+ + V Q
Sbjct: 307 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
SIK WD++ Q + S + P + ++ DG L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 635 VSTNDNGIKILATSDGIR 652
DN +++ + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 389 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 444
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 123 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 174
Query: 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 175 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 229
Query: 505 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 551
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 283
Query: 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
P CT++A+SADG + G+ + V Q
Sbjct: 284 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
+ H V + F HP + +++ +D TIKVWD G + +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580
+ + + S + D IK W + + RT G ++ V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640
+ ++A D +IK W++ + + + G +R N+DG L+A +ND
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 641 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676
++ ++AT + LR ++ S E+S +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932
+++ +D++I++++ + + LKGH+ + ++F H+ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 933 GWE 935
G+E
Sbjct: 181 GFE 183
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542
DKTIK+WD + G GH+ V V H +FI S A D ++ W Y N
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKN 369
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
+++C DDKT++VWD N HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/503 (17%), Positives = 175/503 (34%), Gaps = 74/503 (14%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
L + H V FS ++ + +CG DKT++V+ A G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578
+ +FI + ++D K+K W + + + TY ++ +
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--------------------NSMTGELVHTYDEHSEQ-VN 709
Query: 579 VVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636
F + + L A D +K WD++ + ++ G + RF+ D LLA
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDKLLASC 767
Query: 637 TNDNGIKIL-ATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXX 695
+ D +K+ ATS R + + E+ + +
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 696 XXM-VSIPGMNGDVRS-------LADVKPR----ITEESNDKSKVWKLTELSEPNQCRSL 743
+ G+ G++ + D P+ + S ++W S+ CR
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG- 886
Query: 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803
+ + ++F+ G++ L + + LW+ ++ +NS+ V +
Sbjct: 887 ------HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 804 SGIMMTNDV------------TDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNXXXXX 850
++ + + D E V C LS + Y+ G I +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 851 XXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 910
+ +I+ DD+ IQ++N ++D+ L+GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLIS-SSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL 1058
Query: 911 SHALNVLVSSGADSQLCVWSSDG 933
+S+L WS DG
Sbjct: 1059 L----------KNSRLLSWSFDG 1071
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
+D IA D ++Q++ E ++K H + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECV 986
+S E + T + Q + F H L+ + L +++ + EC
Sbjct: 691 NSMTGE-------LVHTYDEHSEQVNC-CHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039
+S + H FS D +L+ +C D T+ ++ A + R IN +
Sbjct: 743 NTMFGHTNS--VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 875
E+ V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935
A G D ++++++ E ++ + GH+ + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 936 KQKN 939
++K+
Sbjct: 783 ERKS 786
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
+SP L VA S++ V++++ +V + H+ V+ + FS +T D
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSF--LTSSD 908
Query: 488 DKTIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537
D+TI++W+ K +F+ +E V +V H +Q I +G+
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLI-----NGRT-- 959
Query: 538 WLYDNLGSRVDY--EAPGRWCTT---MAYSADG-------------TRTYQGF--RKRSL 577
++DY EA C + Y A G R +Q K+++
Sbjct: 960 -------GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637
+QF + +++ DD I+ W+ QL I G R K+ LL+ S
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW---QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 638 NDNGIKI 644
D +K+
Sbjct: 1070 -DGTVKV 1075
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
D T+KVW+ G K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSV 606
+ A+S D T LA GDD I+ W++ +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST----------------------LLATGDDNGEIRIWNVSNG 1165
Query: 607 QLL 609
+LL
Sbjct: 1166 ELL 1168
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
IA G ++ +I+I + + + H K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 935 EKQKNRFLQ 943
+ K FL+
Sbjct: 1039 QLDKCIFLR 1047
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 927 CVW 929
VW
Sbjct: 343 NVW 345
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
V V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 539
++ D+TIK+W+ K I EG E + C N I S + D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 586
N R + +T+A S DG+ G + + + K
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 587 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 615
NR+ L A + IK WD++S ++ + D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--PHHK 520
H G V+ +A S P+ LC + G D + +WD G K Y E + ++++C P+
Sbjct: 559 GHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPN-- 613
Query: 521 ENIQFIFSTALDGKIKAW------LYDNLGSRVDYEAPGR---------------WCTTM 559
++ A + IK W + ++L +VD +A +CT++
Sbjct: 614 ---RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKVIYCTSL 668
Query: 560 AYSADGTRTYQGF 572
+SADG+ + G+
Sbjct: 669 NWSADGSTLFSGY 681
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
D +++WD G F GH V SV +N Q I S + D IK W + LG
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGE-- 504
Query: 548 DYEAPGRWCT-TMAYSADGTRTYQGFRKRSLGVVQF--DTTKNRFLAAGDDFSIKFWDMD 604
C T++ +G R + + V+F +T + ++A D ++K W++
Sbjct: 505 --------CKYTISEGGEGHRDW-------VSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653
+ +L +++ G ++ + + DG L A D + + ++G +L
Sbjct: 550 NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
D +++++N+ +++S L GH+ ++ +A S ++ S G D + +W
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 897 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 952
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1008
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 235 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 290
Query: 1009 LVYAC-FLDATVCVFSAANLKLR 1030
+ A D TV ++ NLKL+
Sbjct: 291 FILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 476 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 528
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 529 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 574
A D K+ W N + VD C + SAD T R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 575 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 619
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 927 CVW 929
VW
Sbjct: 347 HVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 897 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 952
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQ 1008
+ D + + V + +L I++T K P + +A + +F+ S+
Sbjct: 237 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSE 292
Query: 1009 LVYAC-FLDATVCVFSAANLKLR 1030
+ A D TV ++ NLKL+
Sbjct: 293 FILATGSADKTVALWDLRNLKLK 315
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 476 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 528
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 529 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 574
A D K+ W N + VD C + SAD T R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 575 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 619
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 927 CVW 929
VW
Sbjct: 349 HVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 897 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 952
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1012
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 239 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 293
Query: 1013 CFL------DATVCVFSAANLKLR 1030
F+ D TV ++ NLKL+
Sbjct: 294 EFILATGSADKTVALWDLRNLKLK 317
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 476 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 528
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 529 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 574
A D K+ W N + VD C + SAD T R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 575 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 619
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 927 CVW 929
VW
Sbjct: 351 HVW 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
++ R N SS ++ F+ Q +L G N G+I +WD+ C+
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 410 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
PG SV+ VI W+ +F A S + I+ EV HL
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 463 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 514
+ G+ + HP V T +D +I +WD N Q + +GH+ + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 556
+ H++ + S+ D + W ++ + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 870 QDNNIIAIGMDDSSIQIY--NVRVDEVKS--KLKGHSKRITGLAFSHAL-NVLVSSGADS 924
+N IIA +D+ S+++Y N + + S + HS + + F+ NVL S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 925 QLCVWSSDGWEKQKNRFLQIPTGRTP 950
++ +W N+ + P+ TP
Sbjct: 137 EIFIW-------DMNKCTESPSNYTP 155
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 868 HPQDNNIIAIGM---DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHA-LNVLVSSG 921
HP+++ +A +D SI I+++R +++ +GH K I L + H ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 922 ADSQLCVWSSDGWEK 936
D+ + +W+ + E+
Sbjct: 283 RDNTVLLWNPESAEQ 297
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 516
H + H V+D+A S N I+ DKT+++WD G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 517 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 562
P +++ I S + +IK W L + S + E W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D +++++++R + GH + +AFS ++S+GA+ ++ +W+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 600
L + + A+S DG LA GDD I+
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 601 WDMDSVQLLTS 611
W++ QLL S
Sbjct: 1154 WNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 521
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1001 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1056
Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 579
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1057 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1099
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1100 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1148
Query: 640 NGIKILATSDG 650
I+I SDG
Sbjct: 1149 GEIRIWNVSDG 1159
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 818 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 875
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 779
Query: 548 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 833
Query: 592 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
A + ++ W++DS L D G L + F+
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891
Query: 628 KDGCLLAVSTNDNGIKILAT 647
DG +++D I++ T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 981
S TG+ + Q F H L+ ++ L +++
Sbjct: 685 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 732 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 935 EKQKNRFLQ 943
+ FLQ
Sbjct: 1033 QTGDYVFLQ 1041
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 600
L + + A+S DG LA GDD I+
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 601 WDMDSVQLLTS 611
W++ QLL S
Sbjct: 1161 WNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 818 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 875
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 521
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1008 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1063
Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 579
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1064 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1106
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1107 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1155
Query: 640 NGIKILATSDG 650
I+I SDG
Sbjct: 1156 GEIRIWNVSDG 1166
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 786
Query: 548 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 787 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 840
Query: 592 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
A + ++ W++DS L D G L + F+
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 898
Query: 628 KDGCLLAVSTNDNGIKILAT 647
DG +++D I++ T
Sbjct: 899 PDGSSFLTASDDQTIRVWET 918
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 981
S TG+ + Q F H L+ ++ L +++
Sbjct: 692 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 739 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 935 EKQKNRFLQ 943
+ FLQ
Sbjct: 1040 QTGDYVFLQ 1048
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 927 CVW 929
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 482 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 535 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 580
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 581 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 619
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRW 89
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 488
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 489 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 535
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 927 CVW 929
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 482 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 535 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 580
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 581 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 619
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 507 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
GH APV + CPH N I S + D + W + G + P
Sbjct: 79 GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
T +G KR V T +N L+AG D I WD+ + + ++ D +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674
+++DG L+ S D ++++ G + + R E ++P
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 920
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 921 GADSQLCVW 929
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 515
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
RN VW+ A S + A D V V WS DGS V +V IY ++R
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 457 QHLEIDAHVG-----------GVNDIAFSH-----PNKQLCVI----------------- 483
A VG G A H N Q+ +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 484 ---TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAW 538
+ G+D +++WDA + ++ H A V +V CP + N+ +D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 539 LYDNLGSRVDYEAPGRWCTTMAYS--ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596
G+RV+ G T++ +S + + GF D
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF---------------------PDN 327
Query: 597 SIKFWDMDSVQLLTSIDADGGLPA-SPRIRFNK---DGCLLAVSTNDNGIKILATSDGIR 652
++ W S L +D +PA R+ ++ DG +L+ + +D +K DG
Sbjct: 328 NLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Query: 653 LLR 655
+ R
Sbjct: 384 VKR 386
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
+ + S + DGK+ W +N GRW
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN----------GRW 91
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 488
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 23 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 489 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 535
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRWSQIAVHA 96
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 488
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 489 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 535
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 475 HPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
HPN+Q V T G D + +WD G + + HEA ++ V H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 534 KIKAW 538
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
+AH ++D + K++ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN----------GRW 89
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 488
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRMATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 489 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 535
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--DGKV 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 69/294 (23%)
Query: 384 GLWEVGSRERLVL-----RNFKVW--DLGACSMPL--QAALVKDPGVSVNRVI-WSPDGS 433
G+W R+ +++ R KVW + G C L + V+ + RV+ S D +
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493
L +++ G + + HV V + + V++ D +KV
Sbjct: 221 L----------RVWDIETGQCLHVLM---GHVAAVRCVQYDGRR----VVSGAYDFMVKV 263
Query: 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQF----IFSTALDGKIKAWLYDNLGSRVDY 549
WD + +GH VYS +QF + S +LD I+ W D
Sbjct: 264 WDPETETCLHTLQGHTNRVYS--------LQFDGIHVVSGSLDTSIRVW---------DV 306
Query: 550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQL 608
E + + T G + + G+ K+ L +G+ D ++K WD+ + Q
Sbjct: 307 E-----------TGNCIHTLTGHQSLTSGM----ELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 609 LTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFEN 659
L ++ + A ++FNK+ + S++D +K+ L T + IR L T E+
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
V++ D +I+VWD G + GH++ + K+NI + S D +K W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNI--LVSGNADSTVKIW--- 344
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
D + + +T QG K V KN + + DD ++K W
Sbjct: 345 ------DIK-----------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 602 DMDS---VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
D+ + ++ L ++++ G RIR + + AV + +
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 479 QLC---VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535
Q C +++ DD T+KVW A G GH V+S ++NI I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV---------------- 579
K W + + G T R G R +L V
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 580 -----VQFDTTKNRFLAAGDDFSIKFWD 602
VQ+D R ++ DF +K WD
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWD 265
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
+ G D+SI++++V L GH +G+ N+LVS ADS + + W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI-----W 344
Query: 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963
+ + + LQ G + T +QF+++
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCV 928
+NI+ G DS+++I++++ + L+G H +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 929 W 929
W
Sbjct: 387 W 387
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----IDAHVGGVNDIAFSHPN 477
++ V W P SL V I++ + ++ I+ H V +A+S N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 478 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
+ TC DK++ +W+ ++Y + + H V V H E + + S++ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 534 KIKAWL-YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592
++ W YD+ D+E C + +GT F K GV R +
Sbjct: 176 TVRIWKDYDD-----DWE-----CVAVLNGHEGTVWSSDFDKTE-GVF-------RLCSG 217
Query: 593 GDDFSIKFW 601
DD +++ W
Sbjct: 218 SDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431
+LL G+ + +W ++E R F++ DL A+++ V V WS D
Sbjct: 71 SLLAAGSFDSTVSIW---AKEESADRTFEM-DL--------LAIIEGHENEVKGVAWSND 118
Query: 432 GSLFGVAYSRHIVQIY-SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490
G V I+ + G+E + H V + + HP++ L + DD T
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDD-T 176
Query: 491 IKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
+++W + + + GHE V+S E + + S + D ++ W Y
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 869 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 920
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 921 GADSQLCVW 929
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 504 IFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
+ GH APV + PH N I S + D + W + G + P
Sbjct: 76 LVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
T +G KR V T +N L+AG D I WD+ + + ++ D
Sbjct: 124 ----VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674
+ +++DG L+ S D ++++ G + + R E ++P
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 515
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 522
H G ++ + F+ NK L ++ DD T+++W NG Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 523 IQFIFSTALDGKIKAW 538
+ S ++DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765
G+ S+A + RI E + K WKLT ++E +L +++ L +++ GN+
Sbjct: 64 GEKNSVARL-ARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122
Query: 766 ILALASNAIHLLW 778
I+ N LW
Sbjct: 123 IVTGVENGELRLW 135
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 476 PNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAPVYSVCPHHKENIQFIFSTA 530
P+++ +IT D+T +WD T G + IF GH A V S+ + N S +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-SINSLNANMFISGS 225
Query: 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590
D ++ W + ++ RTY G + + V+F RF
Sbjct: 226 CDTTVRLW-------------------DLRITSRAVRTYHG-HEGDINSVKFFPDGQRFG 265
Query: 591 AAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLL 633
DD + + +DM + L + D LP + F+ G LL
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
+AH ++D + K+ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN----------GRWSQIAVHA 96
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 484 TCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
TC D+++K++D NG + I GHE PV+ V H + S + D K+ W +
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
Query: 542 NLGSRVDYEAPGR 554
N +E G
Sbjct: 90 NGTWEKSHEHAGH 102
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491
G+ S V+I+ G ++ ++ H G V +A++HP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 492 KVWDATNGA--KQYIFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
+W NG K + GH++ V SVC PH I S+ DG I S +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAI---------SLL 132
Query: 548 DYEAPGRW 555
Y G+W
Sbjct: 133 TYTGEGQW 140
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHH 519
GV +A S P + D+ ++VWD+ G ++ GH+ VYSV
Sbjct: 208 GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--F 264
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
+ Q + S +LD +K W N ++ D + P S TY G + L V
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------SGTCEVTYIGHKDFVLSV 316
Query: 580 VQFDTTKN--RFLAAGDDFSIKFWDMDS 605
TT+N L+ D + FWD S
Sbjct: 317 A---TTQNDEYILSGSKDRGVLFWDKKS 341
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 527
+ + FS K L T +D+ I++WD N I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587
S + D ++ W + C+ DG T V
Sbjct: 182 SGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTT-----------VAVSPGDG 219
Query: 588 RFLAAGD-DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNG 641
+++AAG D +++ WD ++ L+ +D++ G + + F +DG + + D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 642 IKI 644
+K+
Sbjct: 280 VKL 282
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D +A G +D I+I+++ ++ L+GH + I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQS 954
D Q + L I G T A S
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--P 517
++ H V+D+A S N ++ D ++++W+ NG QY F GH V SV P
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577
+++ I S D ++ W G T++ +G +
Sbjct: 120 DNRQ----IVSGGRDNALRVW-----------NVKGECMHTLS---------RGAHTDWV 155
Query: 578 GVVQFDTTKNR--FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
V+F + + ++ G D +K WD+ + +L+T D G + + DG L A
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDGSLCAS 213
Query: 636 STNDNGIKILATSDGIRL 653
S D ++ + G L
Sbjct: 214 SDKDGVARLWDLTKGEAL 231
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933
D S++++N++ + + K GH+K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
V +SPD + +++++ G E L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
G D +KVWD G +GH V SV
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D +I G D+ ++++++ + + LKGH+ +T + S ++ SS D +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL-- 222
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
W+ K L P Q + F ++ E + IF+ + + +
Sbjct: 223 ---WDLTKGEALSEMAAGAPINQ----ICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 991 PRESSAP-----ITHATFSCDSQLVYACFLDATVCVFSAA 1025
P + +S D +Y+ + D + V+ +
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 506 EGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
+ H+ ++SV + KEN + + + +LD +K W + + R+D + +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLD----------LQWSL 76
Query: 564 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTSIDADGGLPAS 621
+G LGVV D + +AA D I+ WD+++ + + SIDA G +
Sbjct: 77 EG---------HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDA 125
Query: 622 PRIRFNKDGCLLAVSTNDNGIKILATSDG 650
+ F+ D LA T+ + I G
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 518 HHKENIQFIFSTALDGKIKAW 538
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 518 HHKENIQFIFSTALDGKIKAW 538
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
F+T D L+D R D E M YS D + V F
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 290
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ LA DDF+ WD
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 172
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
+T+ G + + + F N F DD + + +D+ +
Sbjct: 231 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
Q L + D + + F+K G LL +D
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 220 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 275 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CL 329
Query: 518 HHKENIQFIFSTALDGKIKAW 538
++ + + + D +K W
Sbjct: 330 GVTDDGMAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 518 HHKENIQFIFSTALDGKIKAW 538
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 518 HHKENIQFIFSTALDGKIKAW 538
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
R ++W S ++ L + +V +V WSP G+ A I+ D+
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
++ H V +A++ P+ L + TC DK++ VW+ + E E SV
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWE--------VDEEDEYECVSVL 146
Query: 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
H ++++ + + + YD+ ++ E W T +G + +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDT-VKLYREEEDDWVCCA--------TLEG-HEST 196
Query: 577 LGVVQFDTTKNRFLAAGDDFSIKFW 601
+ + FD + R + DD +++ W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
V V+W P L A V++Y D V ++ H V +AF ++L
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSGQRL-- 209
Query: 483 ITCGDDKTIKVWDATNGAKQYI 504
+C DD+T+++W +QY+
Sbjct: 210 ASCSDDRTVRIW------RQYL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVWTI------- 136
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 129 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 182 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 216
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAF 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
W+ D + + + H V IY G V+ H E+ H G V I ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 488 DKTIKVW 494
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 870 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 923
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 924 SQLCVWSSDG 933
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547
DKT+++WD G F GH++ V SV K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVWTI------- 136
Query: 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 608 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIXL 222
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 520
VG +D+ +K+ I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 521 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 580 VQFDTTKNRF-LAAGDD-FSIKF 600
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAF 245
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
W+ D + + + H V IY G V+ H E+ H G V + ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 488 DKTIKVW 494
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 870 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 923
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 924 SQLCVWSSDG 933
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 401 VWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 458
VWD+ G C +QA + VN V + P G F ++Y EV +
Sbjct: 224 VWDMRSGQC---VQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
+ ++ + G + + FS + L +D TI VWD G++ I GHE V ++
Sbjct: 279 SK-ESIIFGASSVDFSLSGRLL--FAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531
A S N + ++T D T +WD +G F GH A V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 532 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV--VQFDTTKNRF 589
D K W D + + Q F V V++ + + F
Sbjct: 219 DKKAMVW---------DMRSG--------------QCVQAFETHESDVNSVRYYPSGDAF 255
Query: 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649
+ DD + + +D+ + + + + + + + F+ G LL ND I +
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 650 GIRL 653
G R+
Sbjct: 316 GSRV 319
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 460 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 519 HKENIQFIFSTALDGKIKAW 538
+ + + S +LDG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 460 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 519 HKENIQFIFSTALDGKIKAW 538
+ + + S +LDG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 522
AH G VN + F+ L +T G D +++W+++NG + G VC + K+
Sbjct: 243 AHNGKVNGLCFTSDGLHL--LTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 523 IQFIFSTA 530
++F S
Sbjct: 295 LKFTVSCG 302
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 639
N+ A G F I WDM D ++LL +I ADG + A P + R K+ + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 640 NG 641
+G
Sbjct: 107 SG 108
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ WSS
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSS 364
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-SVCPHHKENIQFI 526
V D+ FS P+ VIT G D+ I +D +G E + PV + + Q
Sbjct: 209 VRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586
+ D I+ W TT T Q + +GVV T
Sbjct: 268 ATVGADATIRVWD----------------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGN 309
Query: 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 638
R ++ D ++ F+++ ++L +I L +P I + DG ++ S++
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
HP+ ++ A G + ++ + N++ + HS+ ITGLA+S H+ L S D +
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294
Query: 927 CVWSSD 932
V +D
Sbjct: 295 AVLDAD 300
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432
L+ G+ D+ WEV + + + + + V D V WS DG
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPK----------AQQMHTGPVLD-------VCWSDDG 98
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
S A +++ Q ++I H V I + CV+T DKT+K
Sbjct: 99 SKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 493 VWD 495
WD
Sbjct: 155 FWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 926
HPQ + + G ++ ++ + + + HS+ +TGL FS H++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 927 CV 928
V
Sbjct: 283 AV 284
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGGITSFP 26
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCV--------ITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512
+D H G V H + C+ ++CG+D+T+++W NG+ + + +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
Query: 513 YSV 515
+SV
Sbjct: 270 WSV 272
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 397 RNFKVWDLGACSMPLQA--ALVKDPGV---SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451
+ KVW G+ LQA A V D V S N+ + + + + +++ +S
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183
Query: 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511
D VR H+ V+D F I+C +D IK+ D G +EGHE+
Sbjct: 184 NDVVR-------HLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 512 VYSV 515
VY +
Sbjct: 228 VYCI 231
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 61 DSTGKCGPPPPIDNGDITSFP 81
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 639
N+ A G F I W+M D ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 640 NG 641
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 587 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 639
N+ A G F I W +MD ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 640 NG 641
+G
Sbjct: 103 SG 104
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 622
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 82
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 622
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 622
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALP 81
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 622
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 80
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 587 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 622
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
+A+GM+ S++++ +V + K +L H + L F++ VS+G D+ L W
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 874 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 219
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 874 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 208
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1081 GKWGVPPPVDNGSTSSMP 1098
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1081 GKWGVPPPVDNGSTSSMP 1098
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region Of
Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1081 GKWGVPPPVDNGSTSSMP 1098
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ W
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1081 GKWGVPPPVDNGSTSSMP 1098
GK G PPP+DNG +S P
Sbjct: 1 GKCGPPPPIDNGDITSFP 18
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 183 DSTGKCGPPPPIDNGDITSFP 203
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1078 ESEGKWGVPPPVDNGSTSSMP 1098
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
++ I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 930 SS 931
S
Sbjct: 178 PS 179
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,054,431
Number of Sequences: 62578
Number of extensions: 1386061
Number of successful extensions: 3721
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 3003
Number of HSP's gapped (non-prelim): 611
length of query: 1113
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1004
effective length of database: 8,152,335
effective search space: 8184944340
effective search space used: 8184944340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)