Query 001258
Match_columns 1113
No_of_seqs 831 out of 4565
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0275 Conserved WD40 repeat- 100.0 7.2E-66 1.6E-70 495.3 30.3 459 5-657 7-475 (508)
2 KOG0293 WD40 repeat-containing 100.0 6.5E-64 1.4E-68 498.1 35.1 458 5-660 17-481 (519)
3 KOG0319 WD40-repeat-containing 100.0 8.8E-57 1.9E-61 480.5 45.2 573 364-1080 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.2E-54 2.5E-59 464.3 44.8 546 357-1026 61-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.6E-50 5.6E-55 414.1 60.5 579 359-1077 19-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 6.7E-50 1.5E-54 427.6 61.5 570 353-1079 50-711 (893)
7 KOG0271 Notchless-like WD40 re 100.0 7.6E-54 1.6E-58 422.4 25.2 377 339-930 96-479 (480)
8 KOG0306 WD40-repeat-containing 100.0 4.7E-49 1E-53 420.9 47.2 609 359-1078 22-665 (888)
9 KOG0318 WD40 repeat stress pro 100.0 6.1E-47 1.3E-51 389.3 58.1 540 351-1025 52-602 (603)
10 KOG0306 WD40-repeat-containing 100.0 1.6E-47 3.5E-52 409.2 49.3 512 357-1029 64-668 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.1E-49 2.3E-54 393.2 29.9 367 415-1023 110-479 (480)
12 KOG0291 WD40-repeat-containing 100.0 5.4E-45 1.2E-49 390.1 59.8 546 362-1089 18-626 (893)
13 KOG1408 WD40 repeat protein [F 100.0 2.9E-46 6.3E-51 395.6 41.2 636 361-1109 40-750 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1E-40 2.2E-45 353.6 40.3 551 357-1027 77-715 (1080)
15 KOG0273 Beta-transducin family 100.0 1.6E-40 3.4E-45 337.9 32.7 357 346-932 166-523 (524)
16 KOG1539 WD repeat protein [Gen 100.0 3.2E-37 7E-42 334.8 56.7 589 359-1077 35-648 (910)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-40 3.8E-45 333.2 24.1 284 355-779 172-458 (459)
18 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-40 3.2E-45 333.8 23.1 285 463-930 173-458 (459)
19 KOG1063 RNA polymerase II elon 100.0 3.1E-37 6.8E-42 328.2 47.3 587 351-1077 46-763 (764)
20 KOG0263 Transcription initiati 100.0 5.4E-39 1.2E-43 349.2 32.3 276 344-650 363-651 (707)
21 KOG0286 G-protein beta subunit 100.0 2.3E-38 5E-43 302.9 32.6 291 353-779 49-343 (343)
22 KOG0276 Vesicle coat complex C 100.0 8.3E-37 1.8E-41 320.4 44.3 464 357-1023 12-488 (794)
23 KOG0279 G protein beta subunit 100.0 4.3E-37 9.2E-42 292.7 32.2 258 352-655 8-268 (315)
24 KOG2106 Uncharacterized conser 100.0 7E-36 1.5E-40 305.9 42.8 510 351-1076 97-625 (626)
25 KOG1539 WD repeat protein [Gen 100.0 4.1E-35 8.9E-40 318.6 50.6 545 357-1024 75-647 (910)
26 KOG0286 G-protein beta subunit 100.0 1.2E-35 2.5E-40 284.5 32.9 285 459-930 49-343 (343)
27 KOG0296 Angio-associated migra 100.0 2.4E-35 5.2E-40 291.1 34.9 339 415-932 59-398 (399)
28 KOG0292 Vesicle coat complex C 100.0 5.9E-34 1.3E-38 310.0 47.2 573 357-1080 8-597 (1202)
29 KOG0284 Polyadenylation factor 100.0 4.6E-37 1E-41 307.0 20.9 349 282-782 23-381 (464)
30 KOG0279 G protein beta subunit 100.0 2.5E-35 5.4E-40 280.7 31.5 296 748-1078 12-314 (315)
31 KOG1063 RNA polymerase II elon 100.0 5.8E-34 1.3E-38 303.4 45.5 546 363-1077 19-699 (764)
32 KOG0276 Vesicle coat complex C 100.0 4.8E-34 1E-38 299.7 43.9 470 416-1077 9-490 (794)
33 KOG0315 G-protein beta subunit 100.0 3E-35 6.5E-40 274.8 29.7 230 372-650 11-247 (311)
34 KOG0295 WD40 repeat-containing 100.0 1.4E-35 3.1E-40 292.4 25.7 273 351-658 101-373 (406)
35 KOG0295 WD40 repeat-containing 100.0 2E-34 4.3E-39 284.3 24.9 301 415-931 103-405 (406)
36 KOG0315 G-protein beta subunit 100.0 3E-33 6.6E-38 261.5 30.9 296 432-911 10-309 (311)
37 KOG0273 Beta-transducin family 100.0 1.6E-33 3.5E-38 287.0 30.6 255 357-656 234-489 (524)
38 KOG0296 Angio-associated migra 100.0 7.4E-33 1.6E-37 273.6 33.9 332 351-890 57-398 (399)
39 KOG0285 Pleiotropic regulator 100.0 9.8E-34 2.1E-38 278.0 26.0 254 345-650 137-391 (460)
40 KOG0292 Vesicle coat complex C 100.0 8.1E-32 1.7E-36 293.5 43.0 445 416-1024 5-517 (1202)
41 KOG0645 WD40 repeat protein [G 100.0 2.3E-32 4.9E-37 259.3 32.2 246 353-648 9-261 (312)
42 KOG0265 U5 snRNP-specific prot 100.0 4.9E-33 1.1E-37 267.8 28.0 257 347-650 36-298 (338)
43 KOG0265 U5 snRNP-specific prot 100.0 8.1E-33 1.8E-37 266.3 29.1 296 412-888 39-336 (338)
44 KOG2048 WD40 repeat protein [G 100.0 2E-29 4.3E-34 269.1 54.8 499 357-1028 24-551 (691)
45 KOG0293 WD40 repeat-containing 100.0 2.5E-33 5.5E-38 280.1 23.7 293 415-891 219-514 (519)
46 KOG0263 Transcription initiati 100.0 2.1E-33 4.6E-38 305.8 23.3 274 750-1080 377-652 (707)
47 KOG2106 Uncharacterized conser 100.0 1.7E-30 3.7E-35 266.5 40.4 432 351-931 146-625 (626)
48 KOG0285 Pleiotropic regulator 100.0 2.8E-32 6.1E-37 267.8 26.2 294 415-848 146-440 (460)
49 KOG2048 WD40 repeat protein [G 100.0 3.7E-29 8E-34 267.0 51.2 503 420-1080 25-551 (691)
50 KOG0645 WD40 repeat protein [G 100.0 1.8E-31 3.8E-36 253.3 29.5 293 748-1077 11-311 (312)
51 KOG0284 Polyadenylation factor 100.0 1.7E-32 3.6E-37 274.5 21.4 283 750-1078 95-381 (464)
52 KOG0316 Conserved WD40 repeat- 100.0 2.6E-31 5.6E-36 246.4 24.7 253 346-650 4-259 (307)
53 KOG0266 WD40 repeat-containing 100.0 5.2E-31 1.1E-35 300.2 32.3 288 750-1077 158-454 (456)
54 KOG0281 Beta-TrCP (transducin 100.0 1.3E-32 2.8E-37 268.6 16.2 232 357-650 196-430 (499)
55 KOG0282 mRNA splicing factor [ 100.0 3.5E-32 7.5E-37 278.8 19.7 290 415-888 209-503 (503)
56 KOG0266 WD40 repeat-containing 100.0 8.7E-31 1.9E-35 298.4 33.3 256 357-659 158-419 (456)
57 KOG0316 Conserved WD40 repeat- 100.0 2E-30 4.3E-35 240.5 24.9 285 414-846 11-298 (307)
58 KOG1445 Tumor-specific antigen 100.0 6.8E-29 1.5E-33 260.7 39.2 640 349-1045 70-864 (1012)
59 KOG0281 Beta-TrCP (transducin 100.0 1.7E-31 3.7E-36 260.9 16.7 273 464-936 196-481 (499)
60 KOG0282 mRNA splicing factor [ 100.0 4.8E-31 1E-35 270.4 20.7 285 748-1075 211-503 (503)
61 KOG0275 Conserved WD40 repeat- 100.0 1.3E-30 2.8E-35 252.2 17.9 291 750-1075 212-507 (508)
62 cd00200 WD40 WD40 domain, foun 100.0 1.8E-28 3.9E-33 268.2 36.5 245 356-650 7-251 (289)
63 cd00200 WD40 WD40 domain, foun 100.0 2.6E-28 5.7E-33 266.9 36.8 285 415-888 4-289 (289)
64 PLN00181 protein SPA1-RELATED; 100.0 2.5E-28 5.5E-33 301.0 40.2 311 380-931 457-792 (793)
65 KOG0278 Serine/threonine kinas 100.0 7.3E-30 1.6E-34 238.7 18.8 287 415-894 9-301 (334)
66 PLN00181 protein SPA1-RELATED; 100.0 3.6E-28 7.7E-33 299.7 39.8 252 355-650 480-740 (793)
67 KOG0278 Serine/threonine kinas 100.0 9.5E-30 2.1E-34 238.0 17.2 299 748-1094 11-316 (334)
68 KOG0643 Translation initiation 100.0 2.3E-28 5.1E-33 231.4 25.5 297 415-891 5-318 (327)
69 KOG0641 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 218.1 31.5 275 351-650 25-305 (350)
70 KOG0643 Translation initiation 100.0 5E-28 1.1E-32 229.1 23.6 287 460-933 5-318 (327)
71 KOG0640 mRNA cleavage stimulat 100.0 3.2E-27 7E-32 227.8 27.0 271 353-650 107-385 (430)
72 KOG0288 WD40 repeat protein Ti 100.0 1.3E-28 2.9E-33 247.2 18.1 263 343-656 159-424 (459)
73 KOG0313 Microtubule binding pr 100.0 1.9E-27 4.1E-32 236.5 25.0 291 348-732 95-418 (423)
74 KOG1445 Tumor-specific antigen 100.0 4.1E-26 8.9E-31 239.9 36.3 510 501-1089 71-856 (1012)
75 KOG1407 WD40 repeat protein [F 100.0 5.2E-27 1.1E-31 221.6 26.1 276 460-923 15-293 (313)
76 KOG0299 U3 snoRNP-associated p 100.0 4.1E-27 8.9E-32 240.2 26.3 271 351-654 135-416 (479)
77 KOG0313 Microtubule binding pr 100.0 6E-27 1.3E-31 232.9 25.5 302 417-889 102-417 (423)
78 KOG0310 Conserved WD40 repeat- 100.0 7E-27 1.5E-31 240.6 26.0 247 356-650 24-270 (487)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-25 3.6E-30 218.9 33.8 206 415-650 9-219 (311)
80 KOG0274 Cdc4 and related F-box 100.0 2.1E-26 4.5E-31 259.7 29.8 244 357-659 207-451 (537)
81 KOG0283 WD40 repeat-containing 100.0 5.6E-27 1.2E-31 258.5 24.1 272 356-650 265-578 (712)
82 KOG0277 Peroxisomal targeting 100.0 8.6E-27 1.9E-31 219.2 21.5 287 362-731 12-308 (311)
83 KOG0640 mRNA cleavage stimulat 100.0 5.3E-27 1.2E-31 226.3 20.4 247 750-1024 171-425 (430)
84 KOG0294 WD40 repeat-containing 100.0 4.8E-26 1E-30 221.2 27.1 240 816-1079 41-283 (362)
85 KOG0283 WD40 repeat-containing 100.0 1.1E-26 2.5E-31 256.1 25.5 273 749-1027 265-578 (712)
86 KOG0973 Histone transcription 100.0 1.5E-26 3.3E-31 261.6 26.4 304 750-1080 12-358 (942)
87 KOG2096 WD40 repeat protein [G 99.9 1.1E-25 2.4E-30 218.2 27.6 322 598-1023 63-400 (420)
88 KOG0288 WD40 repeat protein Ti 99.9 2.7E-27 5.9E-32 237.8 16.9 286 415-887 170-458 (459)
89 KOG0274 Cdc4 and related F-box 99.9 9.8E-26 2.1E-30 254.3 31.3 287 418-902 206-494 (537)
90 KOG0310 Conserved WD40 repeat- 99.9 4.8E-26 1E-30 234.5 26.0 286 750-1080 25-312 (487)
91 KOG0277 Peroxisomal targeting 99.9 1.3E-26 2.7E-31 218.1 19.1 251 352-647 54-308 (311)
92 KOG0647 mRNA export protein (c 99.9 2.1E-25 4.6E-30 215.4 27.7 247 356-650 25-283 (347)
93 KOG0973 Histone transcription 99.9 4.4E-26 9.5E-31 257.9 25.7 280 357-650 12-357 (942)
94 KOG0308 Conserved WD40 repeat- 99.9 2.1E-26 4.5E-31 244.3 21.6 253 357-650 20-287 (735)
95 KOG1407 WD40 repeat protein [F 99.9 1.9E-25 4.2E-30 211.1 25.7 247 354-650 16-263 (313)
96 PTZ00421 coronin; Provisional 99.9 7.5E-25 1.6E-29 247.6 33.8 262 357-650 19-292 (493)
97 KOG0772 Uncharacterized conser 99.9 1.4E-25 3E-30 231.3 24.8 222 415-655 162-401 (641)
98 KOG0308 Conserved WD40 repeat- 99.9 2.2E-26 4.8E-31 244.1 19.0 367 425-1034 29-402 (735)
99 KOG0305 Anaphase promoting com 99.9 1.3E-25 2.9E-30 242.1 25.2 258 342-650 200-463 (484)
100 KOG0772 Uncharacterized conser 99.9 2.4E-25 5.3E-30 229.5 24.4 301 616-1024 165-486 (641)
101 KOG0264 Nucleosome remodeling 99.9 1.3E-25 2.8E-30 229.9 22.3 269 350-649 116-405 (422)
102 KOG1446 Histone H3 (Lys4) meth 99.9 5.4E-24 1.2E-28 208.4 32.4 288 750-1080 13-306 (311)
103 KOG0301 Phospholipase A2-activ 99.9 3.1E-25 6.6E-30 237.5 25.6 241 351-648 6-249 (745)
104 KOG0268 Sof1-like rRNA process 99.9 4.9E-26 1.1E-30 224.8 17.2 284 416-893 62-348 (433)
105 KOG0305 Anaphase promoting com 99.9 7.3E-25 1.6E-29 236.4 27.5 275 362-781 181-461 (484)
106 PTZ00421 coronin; Provisional 99.9 2.8E-24 6E-29 243.0 33.3 264 751-1033 20-298 (493)
107 KOG0641 WD40 repeat protein [G 99.9 6E-24 1.3E-28 195.9 29.0 308 750-1077 31-349 (350)
108 KOG0289 mRNA splicing factor [ 99.9 1.6E-24 3.5E-29 219.1 27.0 282 619-1024 220-505 (506)
109 KOG0268 Sof1-like rRNA process 99.9 3.4E-26 7.4E-31 225.9 14.1 251 345-650 52-304 (433)
110 KOG0300 WD40 repeat-containing 99.9 8E-25 1.7E-29 211.7 23.0 251 351-650 140-430 (481)
111 KOG0647 mRNA export protein (c 99.9 2.8E-24 6.1E-29 207.7 25.9 207 416-650 23-230 (347)
112 PTZ00420 coronin; Provisional 99.9 6.2E-24 1.3E-28 240.3 32.7 235 377-650 50-295 (568)
113 KOG0299 U3 snoRNP-associated p 99.9 1.7E-24 3.7E-29 221.2 25.1 293 415-837 137-444 (479)
114 KOG2096 WD40 repeat protein [G 99.9 4.5E-24 9.7E-29 207.2 25.9 298 414-845 80-400 (420)
115 KOG0289 mRNA splicing factor [ 99.9 6.4E-24 1.4E-28 214.8 26.6 282 466-931 220-505 (506)
116 PTZ00420 coronin; Provisional 99.9 2E-23 4.2E-28 236.3 31.8 243 351-631 67-319 (568)
117 KOG0300 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 205.9 22.0 201 817-1027 271-478 (481)
118 KOG1332 Vesicle coat complex C 99.9 3.3E-24 7.2E-29 200.8 18.0 256 357-648 10-286 (299)
119 KOG1332 Vesicle coat complex C 99.9 6.1E-24 1.3E-28 199.0 19.3 222 415-648 6-241 (299)
120 KOG1963 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 216.9 40.5 518 425-1083 21-589 (792)
121 KOG0294 WD40 repeat-containing 99.9 1.3E-22 2.7E-27 197.5 28.5 247 457-892 35-283 (362)
122 KOG0639 Transducin-like enhanc 99.9 1E-23 2.2E-28 216.5 20.6 254 351-650 412-665 (705)
123 KOG0301 Phospholipase A2-activ 99.9 3.1E-23 6.6E-28 222.3 24.3 274 748-1077 11-288 (745)
124 KOG1963 WD40 repeat protein [G 99.9 1.2E-20 2.7E-25 209.2 44.3 511 363-1033 21-591 (792)
125 KOG1274 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 206.2 45.2 253 356-649 11-263 (933)
126 KOG4283 Transcription-coupled 99.9 3.9E-22 8.4E-27 191.7 26.3 242 353-654 38-282 (397)
127 KOG1274 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 220.8 29.6 285 749-1074 11-297 (933)
128 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 208.3 23.6 212 420-659 81-317 (476)
129 KOG1036 Mitotic spindle checkp 99.9 8.7E-22 1.9E-26 191.8 27.7 240 357-650 12-264 (323)
130 KOG0264 Nucleosome remodeling 99.9 6.4E-23 1.4E-27 210.4 20.3 236 348-605 167-405 (422)
131 KOG0639 Transducin-like enhanc 99.9 1E-22 2.2E-27 209.3 21.5 281 750-1076 418-703 (705)
132 KOG0646 WD40 repeat protein [G 99.9 1.8E-22 4E-27 207.0 22.1 296 483-913 11-330 (476)
133 KOG0321 WD40 repeat-containing 99.9 1.6E-22 3.4E-27 214.7 21.5 435 425-1026 54-532 (720)
134 KOG1036 Mitotic spindle checkp 99.9 2.2E-21 4.7E-26 189.1 27.1 283 418-880 11-294 (323)
135 KOG1273 WD40 repeat protein [G 99.9 8.2E-22 1.8E-26 191.4 23.5 201 423-648 26-226 (405)
136 KOG1538 Uncharacterized conser 99.9 4.6E-21 9.9E-26 203.4 30.8 456 360-977 14-520 (1081)
137 KOG1273 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 189.6 23.9 267 346-661 12-292 (405)
138 KOG2055 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 198.0 26.6 249 750-1025 256-512 (514)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-20 7.7E-25 204.1 37.0 205 823-1034 77-288 (300)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-20 1E-24 203.2 37.8 294 432-912 1-300 (300)
141 KOG4283 Transcription-coupled 99.9 4.6E-21 9.9E-26 184.4 24.8 305 415-931 38-364 (397)
142 KOG0650 WD40 repeat nucleolar 99.9 4.9E-21 1.1E-25 201.6 26.0 313 459-929 394-732 (733)
143 KOG2055 WD40 repeat protein [G 99.9 6.2E-21 1.4E-25 195.1 24.8 245 358-649 213-468 (514)
144 KOG0321 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 202.5 22.9 291 763-1080 64-394 (720)
145 KOG1538 Uncharacterized conser 99.9 2.9E-20 6.4E-25 197.3 27.5 440 422-1033 14-494 (1081)
146 KOG2445 Nuclear pore complex c 99.9 5E-20 1.1E-24 178.9 26.7 268 462-933 10-319 (361)
147 KOG0302 Ribosome Assembly prot 99.9 2E-20 4.2E-25 186.6 21.8 267 347-641 140-432 (440)
148 KOG0267 Microtubule severing p 99.9 4.7E-22 1E-26 214.0 10.1 234 356-639 26-259 (825)
149 KOG0267 Microtubule severing p 99.9 4.7E-22 1E-26 214.0 10.0 232 817-1069 27-260 (825)
150 KOG4328 WD40 protein [Function 99.9 3.2E-20 7E-25 189.8 22.6 260 357-657 185-458 (498)
151 KOG0650 WD40 repeat nucleolar 99.9 5.7E-20 1.2E-24 193.6 24.6 327 568-1023 395-733 (733)
152 KOG2445 Nuclear pore complex c 99.9 2.1E-19 4.5E-24 174.7 26.6 259 356-648 11-318 (361)
153 KOG0269 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 209.2 15.4 244 360-650 89-342 (839)
154 KOG1009 Chromatin assembly com 99.8 3.8E-19 8.3E-24 179.5 25.9 172 357-542 12-196 (434)
155 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-17 7.2E-22 191.5 46.9 371 353-933 60-443 (466)
156 KOG0270 WD40 repeat-containing 99.8 5.5E-20 1.2E-24 187.7 19.7 263 360-652 175-453 (463)
157 KOG0269 WD40 repeat-containing 99.8 4.7E-20 1E-24 200.5 18.5 269 358-664 39-312 (839)
158 KOG1034 Transcriptional repres 99.8 6E-20 1.3E-24 180.0 16.7 258 357-648 88-383 (385)
159 KOG0302 Ribosome Assembly prot 99.8 2.8E-19 6E-24 178.4 20.9 175 348-542 201-379 (440)
160 KOG1034 Transcriptional repres 99.8 5.2E-19 1.1E-23 173.4 20.8 264 356-650 36-339 (385)
161 KOG0270 WD40 repeat-containing 99.8 4E-19 8.6E-24 181.5 20.3 196 431-650 191-406 (463)
162 KOG4328 WD40 protein [Function 99.8 1.6E-18 3.5E-23 177.6 24.2 312 498-890 175-495 (498)
163 KOG4378 Nuclear protein COP1 [ 99.8 9.1E-19 2E-23 180.3 22.1 292 717-1056 5-303 (673)
164 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-16 7.9E-21 182.7 47.3 369 460-1026 60-443 (466)
165 KOG1524 WD40 repeat-containing 99.8 2.8E-17 6.2E-22 171.0 31.7 506 356-1080 12-526 (737)
166 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 3.9E-23 178.2 22.1 294 589-1007 5-305 (673)
167 KOG1009 Chromatin assembly com 99.8 6.6E-18 1.4E-22 170.7 25.3 162 421-607 14-198 (434)
168 KOG0307 Vesicle coat complex C 99.8 2.4E-19 5.3E-24 204.5 15.6 279 318-650 38-329 (1049)
169 KOG2919 Guanine nucleotide-bin 99.8 4.7E-17 1E-21 159.3 26.0 227 761-1016 121-361 (406)
170 KOG0322 G-protein beta subunit 99.8 6.9E-18 1.5E-22 160.5 19.0 308 500-931 5-322 (323)
171 KOG1310 WD40 repeat protein [G 99.8 1.6E-17 3.6E-22 173.3 22.7 167 460-648 45-231 (758)
172 KOG4497 Uncharacterized conser 99.8 2.3E-17 5E-22 161.6 22.2 405 363-925 13-425 (447)
173 KOG2919 Guanine nucleotide-bin 99.8 5.1E-17 1.1E-21 159.0 22.5 274 468-924 52-362 (406)
174 KOG0303 Actin-binding protein 99.8 3.8E-17 8.2E-22 164.2 21.7 221 412-658 73-304 (472)
175 KOG0649 WD40 repeat protein [G 99.8 4.7E-16 1E-20 146.2 25.8 289 753-1074 12-313 (325)
176 KOG1912 WD40 repeat protein [G 99.8 1E-15 2.2E-20 166.5 31.1 510 357-1004 14-572 (1062)
177 KOG0303 Actin-binding protein 99.8 6.8E-17 1.5E-21 162.4 20.2 245 348-630 71-321 (472)
178 KOG0307 Vesicle coat complex C 99.8 1.2E-17 2.5E-22 190.9 16.7 280 721-1080 36-330 (1049)
179 KOG0644 Uncharacterized conser 99.7 4E-18 8.7E-23 186.3 11.4 286 415-936 185-472 (1113)
180 KOG1188 WD40 repeat protein [G 99.7 7E-17 1.5E-21 159.7 19.0 198 373-613 42-251 (376)
181 KOG0322 G-protein beta subunit 99.7 1.1E-16 2.4E-21 152.4 18.2 308 457-889 6-322 (323)
182 KOG0642 Cell-cycle nuclear pro 99.7 4.9E-17 1.1E-21 171.5 16.6 229 415-650 289-563 (577)
183 KOG1007 WD repeat protein TSSC 99.7 3.5E-16 7.5E-21 150.9 20.4 257 356-648 61-361 (370)
184 KOG1007 WD repeat protein TSSC 99.7 1.8E-16 4E-21 152.7 18.3 228 838-1078 39-290 (370)
185 KOG0644 Uncharacterized conser 99.7 7.9E-18 1.7E-22 184.1 9.8 254 349-661 181-439 (1113)
186 KOG1188 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 155.8 19.1 151 481-650 42-198 (376)
187 KOG4227 WD40 repeat protein [G 99.7 1E-15 2.3E-20 153.1 22.6 166 460-650 51-227 (609)
188 KOG1517 Guanine nucleotide bin 99.7 1.1E-15 2.4E-20 171.8 25.1 320 441-892 1049-1383(1387)
189 KOG1912 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 157.7 32.5 602 345-1029 41-745 (1062)
190 KOG4497 Uncharacterized conser 99.7 2.1E-15 4.6E-20 148.0 23.4 397 425-971 13-421 (447)
191 PRK11028 6-phosphogluconolacto 99.7 4.8E-15 1E-19 164.3 29.6 275 717-1025 5-304 (330)
192 PRK11028 6-phosphogluconolacto 99.7 3.7E-14 8.1E-19 157.2 36.2 272 589-981 5-304 (330)
193 KOG1334 WD40 repeat protein [G 99.7 1.3E-16 2.7E-21 165.0 14.6 320 460-892 137-468 (559)
194 KOG1587 Cytoplasmic dynein int 99.7 1.6E-15 3.5E-20 169.9 24.6 260 353-650 237-518 (555)
195 KOG2110 Uncharacterized conser 99.7 8.2E-15 1.8E-19 147.0 26.8 241 818-1080 5-251 (391)
196 KOG4227 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 151.2 21.8 306 415-780 51-386 (609)
197 KOG1334 WD40 repeat protein [G 99.7 3E-16 6.4E-21 162.3 16.4 306 356-733 140-467 (559)
198 KOG1517 Guanine nucleotide bin 99.7 5E-15 1.1E-19 166.6 26.4 202 823-1028 1170-1384(1387)
199 KOG0649 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 140.4 20.9 253 360-648 12-274 (325)
200 KOG0642 Cell-cycle nuclear pro 99.7 3.4E-16 7.4E-21 165.2 15.7 246 817-1080 293-564 (577)
201 KOG0974 WD-repeat protein WDR6 99.7 5.2E-13 1.1E-17 151.9 39.9 151 364-543 139-290 (967)
202 KOG0290 Conserved WD40 repeat- 99.7 2.9E-14 6.3E-19 138.0 24.5 244 817-1073 95-361 (364)
203 KOG2110 Uncharacterized conser 99.7 2.3E-13 5E-18 136.8 31.6 228 817-1097 86-352 (391)
204 KOG1240 Protein kinase contain 99.7 2.6E-14 5.7E-19 163.8 28.0 212 415-650 1043-1275(1431)
205 KOG0290 Conserved WD40 repeat- 99.7 1E-14 2.2E-19 141.1 20.5 252 355-644 93-361 (364)
206 KOG1587 Cytoplasmic dynein int 99.7 2.3E-14 4.9E-19 160.8 26.8 286 441-933 221-517 (555)
207 KOG0771 Prolactin regulatory e 99.6 3.9E-15 8.4E-20 152.4 15.4 200 863-1079 148-356 (398)
208 KOG1523 Actin-related protein 99.6 2.2E-14 4.8E-19 141.0 19.7 251 357-634 9-265 (361)
209 KOG1524 WD40 repeat-containing 99.6 1.4E-14 2.9E-19 151.4 19.1 208 713-977 74-282 (737)
210 KOG0771 Prolactin regulatory e 99.6 4.9E-15 1.1E-19 151.7 15.1 198 822-1026 148-355 (398)
211 KOG1310 WD40 repeat protein [G 99.6 4.2E-15 9.1E-20 155.5 14.7 238 354-612 46-311 (758)
212 KOG1240 Protein kinase contain 99.6 1.9E-13 4.1E-18 156.9 27.2 269 351-651 1041-1337(1431)
213 KOG1523 Actin-related protein 99.6 3.7E-14 8E-19 139.5 18.4 208 421-651 11-239 (361)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 7.6E-14 1.6E-18 146.4 20.5 247 820-1080 125-455 (636)
215 PF02239 Cytochrom_D1: Cytochr 99.6 2.7E-12 5.9E-17 141.0 32.9 327 525-1034 8-356 (369)
216 PRK01742 tolB translocation pr 99.6 1.5E-13 3.4E-18 156.8 23.8 214 817-1056 202-425 (429)
217 PRK01742 tolB translocation pr 99.6 5.7E-13 1.2E-17 152.2 27.2 224 380-661 183-415 (429)
218 KOG0974 WD-repeat protein WDR6 99.6 2.1E-11 4.6E-16 139.0 39.0 200 361-606 90-290 (967)
219 PF02239 Cytochrom_D1: Cytochr 99.6 2.4E-12 5.2E-17 141.4 30.4 329 480-937 7-352 (369)
220 KOG2139 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 128.5 25.6 262 750-1025 139-431 (445)
221 KOG2111 Uncharacterized conser 99.5 2.1E-12 4.5E-17 127.5 23.4 242 819-1080 6-259 (346)
222 KOG2659 LisH motif-containing 99.5 6.6E-14 1.4E-18 134.1 12.2 167 4-183 25-205 (228)
223 KOG2139 WD40 repeat protein [G 99.5 3.5E-12 7.5E-17 127.6 23.3 255 358-641 98-368 (445)
224 KOG2041 WD40 repeat protein [G 99.5 2E-11 4.3E-16 132.2 30.5 547 357-1026 13-620 (1189)
225 KOG2321 WD40 repeat protein [G 99.5 2.9E-12 6.2E-17 135.7 22.7 195 822-1027 137-345 (703)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-13 7.2E-18 141.6 15.2 157 357-518 218-383 (636)
227 COG4946 Uncharacterized protei 99.5 2.1E-09 4.5E-14 111.7 42.1 145 750-922 358-508 (668)
228 KOG2315 Predicted translation 99.5 8E-11 1.7E-15 125.3 32.0 254 796-1080 106-393 (566)
229 KOG2321 WD40 repeat protein [G 99.5 5.8E-12 1.3E-16 133.4 22.3 259 351-650 44-304 (703)
230 KOG1272 WD40-repeat-containing 99.5 4.5E-13 9.7E-18 138.2 13.0 280 753-1080 131-412 (545)
231 PRK03629 tolB translocation pr 99.5 1.4E-11 3E-16 140.3 26.1 214 817-1056 197-427 (429)
232 KOG1272 WD40-repeat-containing 99.4 1.3E-12 2.9E-17 134.8 14.7 256 359-651 130-412 (545)
233 PF04762 IKI3: IKI3 family; I 99.4 2.7E-08 5.9E-13 121.6 54.4 532 357-1030 74-689 (928)
234 KOG1409 Uncharacterized conser 99.4 1.5E-11 3.3E-16 122.4 20.7 325 585-1026 35-395 (404)
235 KOG2111 Uncharacterized conser 99.4 8.3E-10 1.8E-14 109.4 30.6 237 361-650 8-258 (346)
236 KOG2315 Predicted translation 99.4 3.5E-10 7.6E-15 120.6 30.0 153 359-541 35-202 (566)
237 PF10282 Lactonase: Lactonase, 99.4 4.9E-10 1.1E-14 124.0 33.0 279 724-1031 13-330 (345)
238 PF04762 IKI3: IKI3 family; I 99.4 2.4E-07 5.1E-12 113.6 58.5 473 418-1077 73-639 (928)
239 KOG1354 Serine/threonine prote 99.4 7.1E-11 1.5E-15 117.5 22.8 350 464-978 24-431 (433)
240 PRK03629 tolB translocation pr 99.4 8E-11 1.7E-15 134.1 26.5 221 353-628 193-427 (429)
241 PRK05137 tolB translocation pr 99.4 2.4E-10 5.2E-15 131.3 30.4 216 381-650 182-414 (435)
242 KOG2041 WD40 repeat protein [G 99.4 1.5E-09 3.2E-14 118.0 33.6 524 318-981 35-619 (1189)
243 COG2706 3-carboxymuconate cycl 99.4 2.4E-09 5.2E-14 109.0 32.9 282 723-1030 15-328 (346)
244 KOG3881 Uncharacterized conser 99.4 5.4E-11 1.2E-15 120.9 20.9 256 355-650 52-322 (412)
245 PRK04922 tolB translocation pr 99.4 8.4E-11 1.8E-15 134.8 24.7 220 353-628 198-432 (433)
246 PRK04922 tolB translocation pr 99.4 1.7E-10 3.8E-15 132.2 27.1 215 381-649 184-412 (433)
247 KOG1832 HIV-1 Vpr-binding prot 99.4 9.5E-13 2.1E-17 145.4 7.9 215 356-636 1099-1319(1516)
248 PF10282 Lactonase: Lactonase, 99.4 1.4E-09 3E-14 120.5 32.6 252 818-1083 36-328 (345)
249 PRK02889 tolB translocation pr 99.4 1.1E-10 2.3E-15 133.3 24.3 223 353-629 190-425 (427)
250 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-09 8.6E-14 112.8 33.0 203 823-1033 109-338 (352)
251 KOG3881 Uncharacterized conser 99.3 2.2E-10 4.8E-15 116.5 21.7 117 819-936 203-324 (412)
252 PF08662 eIF2A: Eukaryotic tra 99.3 1.1E-10 2.4E-15 116.1 19.7 155 863-1034 9-187 (194)
253 PRK05137 tolB translocation pr 99.3 3.1E-10 6.7E-15 130.4 26.1 220 353-628 196-432 (435)
254 PRK02889 tolB translocation pr 99.3 2.9E-10 6.4E-15 129.7 25.3 193 416-640 191-392 (427)
255 KOG1354 Serine/threonine prote 99.3 3.1E-10 6.8E-15 113.1 20.1 280 355-651 22-362 (433)
256 COG4946 Uncharacterized protei 99.3 9.8E-08 2.1E-12 99.6 38.6 171 829-1014 331-507 (668)
257 COG5354 Uncharacterized protei 99.3 9E-09 2E-13 108.5 30.8 294 752-1080 72-398 (561)
258 KOG2314 Translation initiation 99.3 4.4E-09 9.6E-14 111.6 28.1 295 752-1080 250-576 (698)
259 KOG1409 Uncharacterized conser 99.3 7.2E-10 1.6E-14 110.7 20.6 216 415-662 19-241 (404)
260 PF08662 eIF2A: Eukaryotic tra 99.3 3.9E-10 8.5E-15 112.3 19.1 151 362-541 9-179 (194)
261 COG5354 Uncharacterized protei 99.2 1.8E-08 3.8E-13 106.4 31.1 133 881-1029 254-399 (561)
262 COG2706 3-carboxymuconate cycl 99.2 5.5E-08 1.2E-12 99.3 32.3 256 817-1087 38-331 (346)
263 TIGR02800 propeller_TolB tol-p 99.2 3.6E-09 7.7E-14 122.1 27.6 205 839-1070 170-387 (417)
264 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.8E-08 8.3E-13 105.3 32.2 237 826-1080 53-333 (352)
265 TIGR02800 propeller_TolB tol-p 99.2 5.5E-09 1.2E-13 120.5 28.0 191 416-640 185-386 (417)
266 PRK04792 tolB translocation pr 99.2 4.6E-09 1E-13 120.2 26.4 222 353-628 212-446 (448)
267 PRK01029 tolB translocation pr 99.2 3.8E-09 8.2E-14 119.8 24.9 223 357-629 183-425 (428)
268 PRK00178 tolB translocation pr 99.2 7.8E-09 1.7E-13 119.2 26.5 224 351-628 191-427 (430)
269 KOG2314 Translation initiation 99.2 4.2E-08 9.1E-13 104.4 29.0 320 578-1025 214-573 (698)
270 KOG4547 WD40 repeat-containing 99.1 6.8E-09 1.5E-13 112.0 21.8 188 828-1026 3-221 (541)
271 PRK00178 tolB translocation pr 99.1 3E-08 6.5E-13 114.4 28.9 199 416-648 194-406 (430)
272 TIGR03300 assembly_YfgL outer 99.1 3.9E-08 8.5E-13 111.3 29.1 305 481-929 67-376 (377)
273 KOG4547 WD40 repeat-containing 99.1 7E-09 1.5E-13 111.9 20.6 146 762-933 69-221 (541)
274 PRK04792 tolB translocation pr 99.1 5.4E-08 1.2E-12 111.4 29.2 199 416-648 213-425 (448)
275 PRK01029 tolB translocation pr 99.1 4.7E-08 1E-12 110.9 27.6 202 418-650 182-405 (428)
276 KOG0280 Uncharacterized conser 99.1 1.6E-08 3.5E-13 99.2 20.1 199 821-1027 124-335 (339)
277 KOG0280 Uncharacterized conser 99.0 1.8E-08 4E-13 98.8 18.7 192 357-565 68-265 (339)
278 PLN02919 haloacid dehalogenase 99.0 1.1E-07 2.4E-12 118.9 30.5 256 821-1080 570-891 (1057)
279 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 3.8E-14 129.3 13.1 196 357-614 2207-2408(2439)
280 KOG4190 Uncharacterized conser 99.0 2.3E-09 5.1E-14 112.9 11.3 291 415-777 730-1032(1034)
281 PLN02919 haloacid dehalogenase 99.0 1.9E-07 4.2E-12 116.8 30.3 260 755-1029 571-892 (1057)
282 TIGR03300 assembly_YfgL outer 99.0 2.4E-07 5.2E-12 105.0 28.1 274 763-1086 65-347 (377)
283 KOG3617 WD40 and TPR repeat-co 99.0 1.6E-07 3.4E-12 104.6 24.0 112 359-497 16-131 (1416)
284 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.5E-13 111.9 13.2 304 355-733 21-340 (1081)
285 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.5E-13 103.2 13.9 169 360-551 64-233 (390)
286 KOG3914 WD repeat protein WDR4 98.9 1.8E-08 3.9E-13 103.7 13.0 158 905-1080 65-226 (390)
287 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.4E-13 122.7 12.0 200 416-657 2204-2406(2439)
288 KOG0309 Conserved WD40 repeat- 98.9 2.6E-08 5.6E-13 109.2 13.5 265 352-650 59-341 (1081)
289 PRK04043 tolB translocation pr 98.8 9E-07 1.9E-11 99.7 26.2 177 359-566 188-380 (419)
290 PF15492 Nbas_N: Neuroblastoma 98.8 1.3E-06 2.9E-11 86.7 22.5 207 824-1035 3-269 (282)
291 KOG1897 Damage-specific DNA bi 98.8 0.00077 1.7E-08 78.3 47.1 578 426-1095 263-917 (1096)
292 PRK04043 tolB translocation pr 98.8 1.6E-06 3.4E-11 97.8 26.2 190 820-1027 189-402 (419)
293 KOG4532 WD40-like repeat conta 98.8 1.3E-06 2.8E-11 84.9 21.5 234 629-933 83-332 (344)
294 PRK11138 outer membrane biogen 98.7 8.8E-06 1.9E-10 92.5 30.4 310 481-931 71-393 (394)
295 PRK11138 outer membrane biogen 98.7 1.2E-05 2.7E-10 91.3 31.1 211 838-1076 169-393 (394)
296 KOG3617 WD40 and TPR repeat-co 98.7 1.4E-06 3E-11 97.4 21.5 72 360-451 61-132 (1416)
297 KOG4190 Uncharacterized conser 98.7 3.6E-08 7.7E-13 104.2 8.8 221 852-1092 728-963 (1034)
298 PF15492 Nbas_N: Neuroblastoma 98.7 1.2E-05 2.5E-10 80.2 25.7 228 362-650 1-261 (282)
299 PF07433 DUF1513: Protein of u 98.7 8.8E-06 1.9E-10 83.9 25.4 182 823-1014 55-275 (305)
300 PF13360 PQQ_2: PQQ-like domai 98.7 5.4E-06 1.2E-10 87.3 25.0 224 838-1084 2-237 (238)
301 KOG4532 WD40-like repeat conta 98.6 6.2E-06 1.4E-10 80.2 20.4 220 373-638 86-322 (344)
302 PF07433 DUF1513: Protein of u 98.6 2.7E-05 5.9E-10 80.4 26.4 241 360-643 6-280 (305)
303 KOG0882 Cyclophilin-related pe 98.6 2.3E-06 5E-11 89.2 18.3 213 418-658 7-240 (558)
304 KOG2695 WD40 repeat protein [G 98.6 2.2E-07 4.7E-12 93.4 9.8 166 364-553 217-388 (425)
305 COG5170 CDC55 Serine/threonine 98.5 1.1E-06 2.4E-11 86.9 13.1 307 464-889 25-366 (460)
306 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0006 1.3E-08 66.6 31.1 147 471-645 16-162 (354)
307 COG5170 CDC55 Serine/threonine 98.5 1.3E-06 2.9E-11 86.3 13.0 227 419-662 25-323 (460)
308 PF08450 SGL: SMP-30/Gluconola 98.5 0.00034 7.3E-09 73.8 32.2 223 362-637 3-244 (246)
309 PF08450 SGL: SMP-30/Gluconola 98.5 0.00013 2.8E-09 77.0 28.8 218 822-1064 3-242 (246)
310 KOG0882 Cyclophilin-related pe 98.5 1.2E-06 2.7E-11 91.2 12.4 213 858-1080 8-234 (558)
311 KOG4714 Nucleoporin [Nuclear s 98.5 4.5E-06 9.7E-11 80.9 15.2 95 839-933 159-255 (319)
312 KOG4714 Nucleoporin [Nuclear s 98.5 1.6E-06 3.5E-11 83.9 12.3 210 361-605 39-255 (319)
313 PF10607 CLTH: CTLH/CRA C-term 98.5 6.6E-07 1.4E-11 85.1 9.2 134 38-182 5-141 (145)
314 PF13360 PQQ_2: PQQ-like domai 98.5 3.1E-05 6.7E-10 81.5 22.8 229 380-653 2-235 (238)
315 PRK02888 nitrous-oxide reducta 98.4 8.2E-05 1.8E-09 84.1 26.3 185 826-1026 200-405 (635)
316 KOG2695 WD40 repeat protein [G 98.4 9.4E-07 2E-11 88.9 9.7 154 832-1035 227-386 (425)
317 KOG0396 Uncharacterized conser 98.4 1.1E-06 2.5E-11 89.6 10.2 122 5-128 115-245 (389)
318 KOG1920 IkappaB kinase complex 98.4 7.8E-05 1.7E-09 88.1 26.3 275 751-1075 68-363 (1265)
319 PF00400 WD40: WD domain, G-be 98.4 7.1E-07 1.5E-11 62.6 6.2 39 892-930 1-39 (39)
320 KOG1832 HIV-1 Vpr-binding prot 98.4 3.9E-07 8.5E-12 102.1 6.8 198 850-1080 1092-1294(1516)
321 PF06433 Me-amine-dh_H: Methyl 98.4 0.00012 2.7E-09 76.5 23.4 207 821-1034 97-329 (342)
322 KOG1920 IkappaB kinase complex 98.3 0.0011 2.5E-08 78.7 33.3 274 575-930 69-363 (1265)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0019 4.2E-08 63.2 29.1 118 364-507 16-133 (354)
324 PRK02888 nitrous-oxide reducta 98.3 3.3E-05 7.1E-10 87.2 19.2 222 828-1078 139-405 (635)
325 KOG1275 PAB-dependent poly(A) 98.3 1.1E-05 2.3E-10 91.7 15.3 181 829-1023 146-340 (1118)
326 KOG1897 Damage-specific DNA bi 98.3 0.023 4.9E-07 66.7 52.3 593 353-1078 301-943 (1096)
327 KOG2066 Vacuolar assembly/sort 98.3 1.9E-05 4.2E-10 88.9 15.7 189 860-1077 40-233 (846)
328 KOG1645 RING-finger-containing 98.2 0.0001 2.2E-09 76.4 19.4 81 415-500 188-269 (463)
329 PF00400 WD40: WD domain, G-be 98.2 2.5E-06 5.3E-11 59.8 5.6 34 415-448 6-39 (39)
330 KOG2114 Vacuolar assembly/sort 98.2 9E-05 2E-09 84.3 19.1 202 866-1080 30-246 (933)
331 PF08596 Lgl_C: Lethal giant l 98.1 0.00093 2E-08 74.1 25.3 281 753-1076 3-334 (395)
332 PF08513 LisH: LisH; InterPro 98.1 4.8E-06 1E-10 51.4 3.9 27 6-32 1-27 (27)
333 cd00216 PQQ_DH Dehydrogenases 98.1 0.0034 7.3E-08 73.2 30.0 215 432-651 61-322 (488)
334 KOG1275 PAB-dependent poly(A) 98.0 8.8E-05 1.9E-09 84.7 15.4 183 431-646 146-340 (1118)
335 KOG3621 WD40 repeat-containing 98.0 0.00053 1.1E-08 76.7 21.1 282 750-1080 32-356 (726)
336 PF08596 Lgl_C: Lethal giant l 98.0 0.0013 2.7E-08 73.1 24.3 268 360-647 3-334 (395)
337 PF06433 Me-amine-dh_H: Methyl 98.0 0.0035 7.6E-08 65.9 25.9 137 489-650 17-167 (342)
338 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0055 1.2E-07 68.3 29.7 104 367-495 1-129 (353)
339 KOG2114 Vacuolar assembly/sort 98.0 0.00059 1.3E-08 78.0 21.0 203 824-1033 29-251 (933)
340 smart00668 CTLH C-terminal to 98.0 5.5E-06 1.2E-10 64.1 3.6 52 38-90 5-56 (58)
341 KOG2066 Vacuolar assembly/sort 98.0 0.00056 1.2E-08 77.6 20.2 186 753-981 41-233 (846)
342 cd00216 PQQ_DH Dehydrogenases 98.0 0.0041 8.9E-08 72.5 28.4 241 831-1086 111-433 (488)
343 KOG1645 RING-finger-containing 97.9 0.00054 1.2E-08 71.2 17.4 95 841-936 175-270 (463)
344 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0043 9.3E-08 69.2 26.5 98 823-921 239-346 (353)
345 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.041 8.8E-07 64.4 34.9 61 839-901 441-501 (527)
346 KOG3621 WD40 repeat-containing 97.9 0.001 2.3E-08 74.5 20.3 121 357-498 32-155 (726)
347 smart00667 LisH Lissencephaly 97.9 2.1E-05 4.5E-10 53.0 4.3 32 4-35 2-33 (34)
348 PF04053 Coatomer_WDAD: Coatom 97.9 0.0015 3.3E-08 73.3 21.3 225 751-1027 32-264 (443)
349 PF11768 DUF3312: Protein of u 97.8 0.0013 2.8E-08 72.8 18.9 114 818-934 205-331 (545)
350 PF04053 Coatomer_WDAD: Coatom 97.8 0.0022 4.9E-08 72.1 21.3 220 818-1080 32-265 (443)
351 PF06977 SdiA-regulated: SdiA- 97.8 0.016 3.5E-07 59.5 25.5 187 357-566 20-234 (248)
352 PF14583 Pectate_lyase22: Olig 97.8 0.0039 8.5E-08 66.8 21.6 176 838-1024 167-380 (386)
353 PF11768 DUF3312: Protein of u 97.8 0.00041 9E-09 76.6 14.5 127 350-499 197-331 (545)
354 PF14583 Pectate_lyase22: Olig 97.7 0.019 4.1E-07 61.7 25.9 286 757-1077 41-381 (386)
355 COG3391 Uncharacterized conser 97.7 0.01 2.2E-07 66.6 25.2 206 820-1034 75-292 (381)
356 PF04841 Vps16_N: Vps16, N-ter 97.7 0.019 4.1E-07 64.8 27.3 198 824-1034 34-255 (410)
357 PF06977 SdiA-regulated: SdiA- 97.7 0.0047 1E-07 63.4 20.2 216 854-1074 16-247 (248)
358 COG0823 TolB Periplasmic compo 97.6 0.0073 1.6E-07 67.8 22.0 178 839-1031 173-364 (425)
359 KOG1008 Uncharacterized conser 97.6 0.0001 2.3E-09 80.9 6.9 252 818-1078 56-336 (783)
360 KOG2817 Predicted E3 ubiquitin 97.6 0.00065 1.4E-08 71.2 11.3 110 6-117 117-239 (394)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.099 2.1E-06 61.2 30.6 241 832-1087 122-500 (527)
362 PF04841 Vps16_N: Vps16, N-ter 97.5 0.24 5.2E-06 56.1 31.9 136 825-989 185-322 (410)
363 KOG1008 Uncharacterized conser 97.5 4.4E-05 9.5E-10 83.7 1.9 159 357-539 55-223 (783)
364 PF02897 Peptidase_S9_N: Proly 97.4 0.12 2.7E-06 59.3 29.7 246 361-651 126-407 (414)
365 COG0823 TolB Periplasmic compo 97.4 0.0094 2E-07 66.9 19.0 182 357-567 191-383 (425)
366 COG3391 Uncharacterized conser 97.4 0.16 3.5E-06 57.1 28.9 241 820-1080 32-286 (381)
367 PF00780 CNH: CNH domain; Int 97.3 0.12 2.6E-06 55.5 25.7 233 761-1034 5-264 (275)
368 PRK13616 lipoprotein LpqB; Pro 97.2 0.018 3.8E-07 67.8 19.7 188 819-1020 350-563 (591)
369 COG3490 Uncharacterized protei 97.2 0.25 5.3E-06 49.9 23.6 208 822-1034 71-319 (366)
370 PF08553 VID27: VID27 cytoplas 97.1 0.013 2.8E-07 69.7 16.8 148 477-647 492-646 (794)
371 PRK13616 lipoprotein LpqB; Pro 97.1 0.084 1.8E-06 62.2 23.5 147 860-1024 350-524 (591)
372 KOG4640 Anaphase-promoting com 97.1 0.0021 4.6E-08 71.1 9.5 95 357-474 19-114 (665)
373 COG3386 Gluconolactonase [Carb 97.1 0.2 4.3E-06 53.6 24.1 229 365-638 31-275 (307)
374 COG3386 Gluconolactonase [Carb 97.1 0.15 3.1E-06 54.7 22.8 221 824-1067 30-275 (307)
375 PF08553 VID27: VID27 cytoplas 97.1 0.037 8.1E-07 65.9 19.9 148 871-1024 492-646 (794)
376 PF03178 CPSF_A: CPSF A subuni 97.0 0.19 4.2E-06 55.2 24.2 218 381-645 2-262 (321)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.13 2.9E-06 56.9 22.3 94 425-519 6-118 (415)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.32 7E-06 54.0 24.8 88 823-911 6-117 (415)
379 PF02897 Peptidase_S9_N: Proly 96.9 0.2 4.4E-06 57.5 24.7 239 821-1080 126-407 (414)
380 PF00780 CNH: CNH domain; Int 96.9 0.28 6E-06 52.7 24.0 225 827-1080 4-258 (275)
381 COG3490 Uncharacterized protei 96.9 0.2 4.3E-06 50.5 20.0 210 862-1080 70-313 (366)
382 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 68.4 9.6 94 859-961 20-114 (665)
383 smart00320 WD40 WD40 repeats. 96.8 0.003 6.4E-08 43.4 5.4 39 892-930 2-40 (40)
384 PF14727 PHTB1_N: PTHB1 N-term 96.8 1.3 2.9E-05 49.4 30.3 282 763-1080 37-363 (418)
385 KOG2395 Protein involved in va 96.7 0.026 5.6E-07 61.5 13.6 206 420-647 276-499 (644)
386 PF03178 CPSF_A: CPSF A subuni 96.6 0.08 1.7E-06 58.2 17.2 179 830-1022 42-262 (321)
387 KOG2079 Vacuolar assembly/sort 96.5 0.058 1.3E-06 64.0 15.6 100 373-497 101-203 (1206)
388 TIGR03074 PQQ_membr_DH membran 96.5 3.3 7.2E-05 50.5 38.4 214 432-652 194-481 (764)
389 PF15390 DUF4613: Domain of un 96.5 0.29 6.4E-06 54.7 19.7 159 860-1027 20-188 (671)
390 PF07995 GSDH: Glucose / Sorbo 96.3 1.7 3.6E-05 47.8 25.3 111 360-486 3-133 (331)
391 KOG2079 Vacuolar assembly/sort 96.3 0.055 1.2E-06 64.2 13.8 105 431-541 98-203 (1206)
392 PRK10115 protease 2; Provision 96.3 2.2 4.7E-05 52.0 28.0 196 819-1025 127-344 (686)
393 smart00320 WD40 WD40 repeats. 96.3 0.012 2.5E-07 40.2 5.5 34 460-495 7-40 (40)
394 PF10647 Gmad1: Lipoprotein Lp 96.2 0.74 1.6E-05 48.3 20.8 145 819-970 24-183 (253)
395 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.29 6.4E-06 42.4 14.2 102 423-536 2-109 (111)
396 KOG2395 Protein involved in va 96.2 0.084 1.8E-06 57.7 13.4 144 874-1024 348-499 (644)
397 KOG2444 WD40 repeat protein [G 96.1 0.017 3.8E-07 56.2 7.4 104 830-933 70-178 (238)
398 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.28 6.1E-06 42.5 13.8 102 512-643 2-109 (111)
399 PF14870 PSII_BNR: Photosynthe 96.1 1.1 2.5E-05 47.6 21.6 159 856-1022 141-301 (302)
400 PF05096 Glu_cyclase_2: Glutam 96.1 1.4 3E-05 45.3 20.7 185 821-1014 47-249 (264)
401 PHA02713 hypothetical protein; 95.9 0.44 9.4E-06 56.5 19.5 198 871-1093 303-547 (557)
402 PF07995 GSDH: Glucose / Sorbo 95.8 1.5 3.2E-05 48.3 21.9 241 820-1072 3-330 (331)
403 COG3204 Uncharacterized protei 95.8 1.8 3.9E-05 44.5 19.8 202 750-977 84-308 (316)
404 TIGR03074 PQQ_membr_DH membran 95.8 2.3 5E-05 51.8 24.7 210 874-1084 196-484 (764)
405 KOG2444 WD40 repeat protein [G 95.6 0.043 9.3E-07 53.6 7.7 108 916-1034 32-141 (238)
406 PF12894 Apc4_WD40: Anaphase-p 95.6 0.03 6.5E-07 40.2 5.0 34 358-393 11-44 (47)
407 PF10647 Gmad1: Lipoprotein Lp 95.6 2.3 5E-05 44.6 21.1 150 360-531 25-185 (253)
408 KOG4499 Ca2+-binding protein R 95.5 1.3 2.7E-05 43.6 16.8 89 822-911 161-262 (310)
409 KOG4441 Proteins containing BT 95.5 1 2.2E-05 53.3 20.1 234 828-1088 283-555 (571)
410 PF12894 Apc4_WD40: Anaphase-p 95.4 0.052 1.1E-06 39.0 5.7 33 420-453 11-43 (47)
411 KOG1898 Splicing factor 3b, su 95.4 9.3 0.0002 46.4 37.2 113 956-1080 937-1051(1205)
412 KOG4499 Ca2+-binding protein R 95.3 2.3 4.9E-05 41.9 17.8 140 465-628 108-263 (310)
413 PHA02713 hypothetical protein; 95.2 1.2 2.6E-05 52.8 19.5 187 828-1030 302-538 (557)
414 PF05694 SBP56: 56kDa selenium 95.1 1.2 2.6E-05 48.7 17.3 191 823-1014 134-392 (461)
415 COG3204 Uncharacterized protei 94.8 3 6.6E-05 42.9 17.9 168 898-1078 81-264 (316)
416 PF05096 Glu_cyclase_2: Glutam 94.3 7 0.00015 40.3 19.5 190 751-970 44-248 (264)
417 PRK10115 protease 2; Provision 94.3 18 0.00038 44.4 32.7 244 752-1028 127-397 (686)
418 KOG3630 Nuclear pore complex, 94.2 0.66 1.4E-05 55.9 13.5 146 818-969 100-260 (1405)
419 PF02333 Phytase: Phytase; In 94.2 3.3 7.2E-05 45.3 18.0 195 871-1079 67-292 (381)
420 KOG4441 Proteins containing BT 94.1 2.9 6.2E-05 49.6 19.1 194 821-1030 325-551 (571)
421 cd08044 TAF5_NTD2 TAF5_NTD2 is 94.1 0.13 2.8E-06 47.5 6.3 66 67-133 25-90 (133)
422 COG3823 Glutamine cyclotransfe 94.0 1.8 3.8E-05 41.9 13.5 173 829-1013 55-247 (262)
423 PF12234 Rav1p_C: RAVE protein 94.0 1.4 3E-05 51.5 15.6 125 466-603 30-155 (631)
424 PF05694 SBP56: 56kDa selenium 93.8 13 0.00028 41.1 27.2 132 839-970 222-391 (461)
425 PF04494 TFIID_90kDa: WD40 ass 93.7 0.15 3.2E-06 47.7 6.1 63 67-130 36-98 (142)
426 KOG2280 Vacuolar assembly/sort 93.7 5.7 0.00012 46.3 19.2 183 839-1036 64-257 (829)
427 KOG3616 Selective LIM binding 93.7 1.4 3.1E-05 50.3 14.2 78 420-506 14-91 (1636)
428 PF10168 Nup88: Nuclear pore c 93.4 12 0.00025 45.6 22.5 73 860-934 85-181 (717)
429 COG4257 Vgb Streptogramin lyas 93.4 10 0.00022 38.6 21.7 244 817-1089 60-318 (353)
430 PHA03098 kelch-like protein; P 93.2 4.4 9.5E-05 48.3 19.1 187 828-1030 293-516 (534)
431 PF12234 Rav1p_C: RAVE protein 93.1 1.9 4E-05 50.6 14.8 119 858-980 28-155 (631)
432 KOG1916 Nuclear protein, conta 93.1 0.085 1.8E-06 61.2 3.9 178 839-1024 153-373 (1283)
433 KOG2280 Vacuolar assembly/sort 93.0 4.4 9.5E-05 47.2 17.0 196 804-1024 72-279 (829)
434 TIGR03118 PEPCTERM_chp_1 conse 93.0 13 0.00028 38.8 18.6 211 861-1080 24-282 (336)
435 KOG3630 Nuclear pore complex, 92.9 1.7 3.7E-05 52.6 14.0 99 820-921 157-262 (1405)
436 PF15390 DUF4613: Domain of un 92.7 22 0.00048 40.6 23.3 126 353-497 51-186 (671)
437 PHA03098 kelch-like protein; P 92.6 4 8.6E-05 48.7 17.6 147 913-1080 342-514 (534)
438 KOG1916 Nuclear protein, conta 92.5 0.23 5E-06 57.9 6.4 166 357-546 131-328 (1283)
439 PRK13684 Ycf48-like protein; P 92.4 20 0.00044 39.4 27.9 156 859-1024 172-330 (334)
440 PF14761 HPS3_N: Hermansky-Pud 92.3 6.1 0.00013 39.1 14.8 155 820-980 19-213 (215)
441 TIGR02604 Piru_Ver_Nterm putat 92.3 4.2 9.2E-05 45.5 16.1 149 903-1068 14-204 (367)
442 TIGR03118 PEPCTERM_chp_1 conse 92.2 17 0.00037 38.0 22.0 222 422-657 24-287 (336)
443 PHA02790 Kelch-like protein; P 92.1 7.9 0.00017 45.2 18.6 183 829-1028 271-473 (480)
444 PF03022 MRJP: Major royal jel 92.1 16 0.00034 39.1 19.3 170 840-1013 35-253 (287)
445 COG1520 FOG: WD40-like repeat 91.8 19 0.00042 40.4 20.9 201 826-1035 65-278 (370)
446 PRK13684 Ycf48-like protein; P 91.6 25 0.00054 38.7 28.8 157 902-1076 172-330 (334)
447 TIGR02604 Piru_Ver_Nterm putat 91.5 5.3 0.00011 44.8 15.8 151 860-1016 14-204 (367)
448 PF10313 DUF2415: Uncharacteri 90.8 1 2.2E-05 31.4 5.5 32 421-452 1-35 (43)
449 KOG2247 WD40 repeat-containing 90.7 0.045 9.7E-07 59.2 -1.6 145 756-929 39-185 (615)
450 PF10168 Nup88: Nuclear pore c 90.4 5.4 0.00012 48.3 15.1 87 995-1084 84-186 (717)
451 COG5167 VID27 Protein involved 90.1 15 0.00033 40.7 16.3 155 471-648 472-632 (776)
452 PF08728 CRT10: CRT10; InterP 89.6 15 0.00033 43.7 17.3 116 422-540 102-245 (717)
453 COG3823 Glutamine cyclotransfe 89.5 11 0.00025 36.6 13.3 183 871-1066 55-248 (262)
454 COG4590 ABC-type uncharacteriz 89.5 3.3 7.2E-05 44.8 10.8 170 852-1030 213-391 (733)
455 PF10313 DUF2415: Uncharacteri 89.4 1.3 2.8E-05 30.9 5.2 32 860-891 1-34 (43)
456 PLN00033 photosystem II stabil 89.1 43 0.00094 37.6 27.5 151 863-1022 242-396 (398)
457 KOG1898 Splicing factor 3b, su 88.6 70 0.0015 39.4 34.5 104 824-932 939-1048(1205)
458 PF07676 PD40: WD40-like Beta 88.6 1.6 3.5E-05 29.9 5.5 33 354-386 4-38 (39)
459 KOG4460 Nuclear pore complex, 88.3 7.7 0.00017 43.1 12.7 44 1045-1088 164-209 (741)
460 PF13449 Phytase-like: Esteras 87.7 39 0.00086 37.0 18.5 160 750-919 18-231 (326)
461 PF14870 PSII_BNR: Photosynthe 87.2 46 0.001 35.7 30.4 231 820-1074 63-301 (302)
462 PF14727 PHTB1_N: PTHB1 N-term 86.9 59 0.0013 36.6 32.3 158 475-647 34-203 (418)
463 PHA02790 Kelch-like protein; P 86.7 25 0.00055 41.0 17.3 53 596-650 415-472 (480)
464 PF13449 Phytase-like: Esteras 86.7 24 0.00052 38.7 16.1 163 859-1025 19-249 (326)
465 COG5290 IkappaB kinase complex 86.6 36 0.00077 40.2 17.1 91 908-1007 252-348 (1243)
466 PF08728 CRT10: CRT10; InterP 86.4 2.8 6.2E-05 49.5 8.9 123 372-496 115-245 (717)
467 KOG1983 Tomosyn and related SN 86.3 11 0.00024 47.7 14.7 67 956-1029 202-268 (993)
468 PF11725 AvrE: Pathogenicity f 86.3 1.2E+02 0.0025 39.9 22.6 149 357-542 361-517 (1774)
469 PF07569 Hira: TUP1-like enhan 86.1 3.9 8.5E-05 41.6 8.9 74 366-453 18-98 (219)
470 PF14761 HPS3_N: Hermansky-Pud 85.3 37 0.0008 33.8 14.5 148 873-1024 29-213 (215)
471 COG4590 ABC-type uncharacteriz 85.1 4.1 8.9E-05 44.1 8.5 159 817-985 219-390 (733)
472 KOG2377 Uncharacterized conser 84.6 19 0.0004 39.5 13.0 141 863-1012 26-170 (657)
473 COG3292 Predicted periplasmic 84.2 84 0.0018 36.0 23.5 71 420-498 164-234 (671)
474 PF05935 Arylsulfotrans: Aryls 83.6 37 0.0008 39.5 16.5 120 908-1036 153-312 (477)
475 PF14781 BBS2_N: Ciliary BBSom 83.6 35 0.00076 31.1 12.3 121 361-507 1-135 (136)
476 KOG2063 Vacuolar assembly/sort 83.4 98 0.0021 38.3 19.9 249 757-1033 20-276 (877)
477 KOG1900 Nuclear pore complex, 83.2 14 0.0003 46.3 13.0 171 344-542 64-273 (1311)
478 PF12657 TFIIIC_delta: Transcr 83.1 5.9 0.00013 38.7 8.5 31 421-451 86-122 (173)
479 KOG1900 Nuclear pore complex, 83.0 11 0.00024 47.1 12.0 147 879-1026 96-273 (1311)
480 PF07569 Hira: TUP1-like enhan 82.8 11 0.00024 38.3 10.5 74 1003-1080 18-98 (219)
481 KOG1983 Tomosyn and related SN 82.7 39 0.00085 43.0 17.2 35 358-393 35-69 (993)
482 COG3292 Predicted periplasmic 81.8 1E+02 0.0023 35.3 26.0 154 353-538 159-315 (671)
483 COG1520 FOG: WD40-like repeat 81.7 95 0.0021 34.8 21.7 160 829-991 111-278 (370)
484 KOG2377 Uncharacterized conser 81.7 91 0.002 34.5 17.5 121 417-541 63-185 (657)
485 KOG3616 Selective LIM binding 81.6 22 0.00047 41.3 12.8 65 707-781 19-83 (1636)
486 PF10214 Rrn6: RNA polymerase 81.5 1.5E+02 0.0033 37.0 27.1 174 817-1026 78-277 (765)
487 PF09862 DUF2089: Protein of u 81.3 6.1 0.00013 34.6 6.7 78 2-98 32-113 (113)
488 PF12768 Rax2: Cortical protei 81.2 42 0.00092 35.5 14.3 93 381-496 16-122 (281)
489 PF11635 Med16: Mediator compl 80.9 97 0.0021 38.5 19.5 67 954-1020 261-345 (753)
490 KOG4460 Nuclear pore complex, 80.9 37 0.0008 38.1 13.7 93 519-612 111-206 (741)
491 TIGR03606 non_repeat_PQQ dehyd 79.9 41 0.00089 38.3 14.5 123 894-1017 21-167 (454)
492 PF05935 Arylsulfotrans: Aryls 79.6 47 0.001 38.6 15.6 129 958-1089 153-313 (477)
493 KOG2247 WD40 repeat-containing 79.1 0.45 9.8E-06 51.9 -1.0 120 351-495 67-186 (615)
494 COG5290 IkappaB kinase complex 78.9 55 0.0012 38.7 14.8 130 954-1095 248-384 (1243)
495 PF08801 Nucleoporin_N: Nup133 78.8 70 0.0015 36.7 16.7 31 575-605 190-220 (422)
496 TIGR03548 mutarot_permut cycli 78.7 1.1E+02 0.0023 33.6 20.0 67 962-1029 122-198 (323)
497 COG5167 VID27 Protein involved 78.6 32 0.00069 38.4 12.3 144 871-1025 478-632 (776)
498 PF03022 MRJP: Major royal jel 78.5 99 0.0022 33.1 20.4 147 490-636 35-253 (287)
499 PF12657 TFIIIC_delta: Transcr 78.0 14 0.00031 36.0 9.2 31 903-933 86-122 (173)
500 COG4257 Vgb Streptogramin lyas 77.3 93 0.002 32.1 22.4 240 356-650 59-307 (353)
No 1
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.2e-66 Score=495.32 Aligned_cols=459 Identities=20% Similarity=0.326 Sum_probs=391.0
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001258 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (1113)
+.||||||+|||+|+.+.+++++||+|+++++| ++-|.+.|..|+||.++..+.+|+ ++.+-+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLK------LP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLK------LPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhcc------CchhHHHHHHHHH
Confidence 568999999999999999999999999999998 889999999999999999999994 4446889999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccChHHHHHHHHHhcccccccchhhccCCCChhHHHHHHHHHHhhccCCCCcc
Q 001258 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR 158 (1113)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1113)
.|||+|.++...|..+||+. +.-|+..+|++|-+|+.||..+.++.++.|.+ .+.+.+|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999966 44566779999999999999999999999876 34556667777777666554
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001258 159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP 238 (1113)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1113)
+||+||+.||.||++||+. +|.+||++..|+
T Consensus 155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence 9999999999999999988 467789999999
Q ss_pred CCCCCCCCCCcccccccCCCCccCCCccccccCCCCCCcccccccCCCCCCCCCcccCCCCCchhhhcccCCCCCccccc
Q 001258 239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN 318 (1113)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (1113)
|++.++ |....++..|+...+.|+|+++|++
T Consensus 186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~---------------------------------------- 216 (508)
T KOG0275|consen 186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSHV---------------------------------------- 216 (508)
T ss_pred ccchhh---------hhhhHhhhchHHhhhheecccccch----------------------------------------
Confidence 998874 4556777777777777777777654
Q ss_pred cCcccCCccccCCcccCCCCCCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeee
Q 001258 319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 398 (1113)
Q Consensus 319 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~ 398 (1113)
.|..|||||+| |++|+.||.|.+||+.+|+......
T Consensus 217 -------------------------------------------EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 217 -------------------------------------------ECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred -------------------------------------------hheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence 68899999996 9999999999999999999876433
Q ss_pred eeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCC
Q 001258 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN 477 (1113)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~ 477 (1113)
++.- ..+..|.++|.|+.||.|...||+|+.||.|+||.+.+|.|++ .|. +|...|+|+.||.|+
T Consensus 253 YQAq-----------d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 253 YQAQ-----------DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred hhhh-----------cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence 3322 2467789999999999999999999999999999999999998 454 899999999999999
Q ss_pred CeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC--Cc
Q 001258 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RW 555 (1113)
Q Consensus 478 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~ 555 (1113)
. .+++++.|.+++|.-+.+|++++.++||.+.|+...| ..+|..+++++.||+|++|+..+.++..++...+ ..
T Consensus 319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred c--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 9 5999999999999999999999999999999999886 4677899999999999999999998888776543 35
Q ss_pred eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC-CCCCCcCeEEECCCCCEEE
Q 001258 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA 634 (1113)
Q Consensus 556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 634 (1113)
|.++..-|... ..++++...++|+|-++ .|+.+..+... ...+...+++.+|.|.+++
T Consensus 395 vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 395 VNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 55555555433 46888889999999998 57788777533 2234566889999999999
Q ss_pred EEECCCcEEEEEcCCCccceecc
Q 001258 635 VSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+.+.|+.++.+...+| .+-+.+
T Consensus 454 cigED~vlYCF~~~sG-~LE~tl 475 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG-KLERTL 475 (508)
T ss_pred EEccCcEEEEEEeecC-ceeeee
Confidence 9999999999998887 444443
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-64 Score=498.09 Aligned_cols=458 Identities=22% Similarity=0.310 Sum_probs=375.5
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001258 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (1113)
+.|++|+++|+|+.+||.+|+..||.|+|+.++ ...|.+.++.|+|++++..+..+...+ +.-...+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998875333 3334459999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccc-cchhhccCCCChhHHHHHHHHHHhhccCCCCcccc
Q 001258 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR-ENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK 160 (1113)
Q Consensus 82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1113)
||++..+...+|+.+||+.+.++. ++.+++++|..-+..++-. .++... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988885 5889999998866554433 333322 223677899999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001258 161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240 (1113)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1113)
+|++||+.||+||++||+++|.||+ ..+..+||.||.|++ ..+|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip--------------- 213 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP--------------- 213 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence 9999999999999999999999999 566689999999988 1111
Q ss_pred CCCCCCCCcccccccCCCCccCCCccccccCCCCCCcccccccCCCCCCCCCcccCCCCCchhhhcccCCCCCccccccC
Q 001258 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP 320 (1113)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (1113)
T Consensus 214 -------------------------------------------------------------------------------- 213 (519)
T KOG0293|consen 214 -------------------------------------------------------------------------------- 213 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCCcccCCCCCCCCCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeee
Q 001258 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 399 (1113)
Q Consensus 321 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~ 399 (1113)
.+..+++. |.++||-+.||++|+| ||+|+.|.+..||++.....+..
T Consensus 214 ----------------------------~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl--- 261 (519)
T KOG0293|consen 214 ----------------------------SQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL--- 261 (519)
T ss_pred ----------------------------chhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee---
Confidence 11113334 9999999999999997 99999999999999876544221
Q ss_pred eeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCe
Q 001258 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1113)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 479 (1113)
..++.||..+|..+.||||.+||++|+.|..+.+||+.+|....... .+|...+.+++|.|||.
T Consensus 262 -------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~- 325 (519)
T KOG0293|consen 262 -------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF- 325 (519)
T ss_pred -------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc-
Confidence 11588999999999999999999999999999999999998775321 24668999999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEE
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 558 (1113)
.+++|+.|+++..||+. |..+..+++-. ..|.++++ +.||.++++.+.|..|++++..+...+. +.....+|++
T Consensus 326 -~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its 400 (519)
T KOG0293|consen 326 -RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITS 400 (519)
T ss_pred -eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeE
Confidence 69999999999999954 66666666543 55888885 4677899999999999999988754443 2334556777
Q ss_pred EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEE
Q 001258 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVST 637 (1113)
Q Consensus 559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 637 (1113)
.+.|.+++ ++++.-.+..+++||++..+.+..+.+|.....+..-+|.- +..++++|+
T Consensus 401 ~~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 401 FSISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred EEEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC
Confidence 77777776 57777789999999999988888888887655566667765 568999999
Q ss_pred CCCcEEEEEcCCCccceeccccc
Q 001258 638 NDNGIKILATSDGIRLLRTFENL 660 (1113)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~ 660 (1113)
.|+.|+||+..++ .++..+.||
T Consensus 460 ED~kvyIWhr~sg-kll~~LsGH 481 (519)
T KOG0293|consen 460 EDSKVYIWHRISG-KLLAVLSGH 481 (519)
T ss_pred CCceEEEEEccCC-ceeEeecCC
Confidence 9999999999888 666666543
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-57 Score=480.55 Aligned_cols=573 Identities=15% Similarity=0.229 Sum_probs=473.8
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 442 (1113)
++|+++|+. |++.. ...|.+-|+.++... .. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 77764 346888999998763 21 2334567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC
Q 001258 443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1113)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1113)
.+++|++.+++.++ .++. |+++|.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 6676 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEE
Q 001258 522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1113)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 600 (1113)
+...|++|..|+++++||+.+... ...+..|...|+++++++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 878899999999999999996554 667788888899888888876 5899999999999
Q ss_pred EECCCCceEEEEccCCCCCCcCeEEECCC-----CCEEEEEECCCcEEEEEcCCCccceecccccc-ccccccCCCCCCC
Q 001258 601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPT 674 (1113)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 674 (1113)
||+.+.+....+.... .+-++.+-++ +.++++++.+|.+++||..++ .+........ ..+.
T Consensus 219 wd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~e~~--------- 285 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYE---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSEEID--------- 285 (775)
T ss_pred eehhhhhhhheechhh---heeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCchhhh---------
Confidence 9998877777776543 3566777776 679999999999999999888 4433322211 0000
Q ss_pred cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1113)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1113)
..........++....|..+.++|.++.....++ .+....|
T Consensus 286 --------------------------------~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI 326 (775)
T KOG0319|consen 286 --------------------------------HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEI 326 (775)
T ss_pred --------------------------------cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhh
Confidence 0111223455667777889999987765444333 3466788
Q ss_pred EEEEE-eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEE
Q 001258 755 SRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1113)
Q Consensus 755 ~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l 833 (1113)
.++.| .|+.+.+++++..+.+++|+...... . .+.+ |.+.|.++....+|-+|
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~G--H~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIPG--HTEAVLSLDVWSSGDLL 380 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEeC--chhheeeeeecccCcEE
Confidence 88887 56778899999999999997653211 1 1333 99999999977888999
Q ss_pred EEEe-CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee---------eeeec
Q 001258 834 MSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLK 899 (1113)
Q Consensus 834 ~~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~---------~~~l~ 899 (1113)
++++ |.++++|.++.. .++....+|...|.+++++.....+|++++.|+++++|++...+. .....
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9999 999999988433 345667899999999999886678999999999999999976211 11335
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEE
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF 978 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~ 978 (1113)
.|...|++++.+|+.+++||||.|++.+||+++. .....++.||.. .+.++.|+|..+.+++ +.|++|+||
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEE
Confidence 7999999999999999999999999999999995 345677888885 8999999999999999 699999999
Q ss_pred eCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCC
Q 001258 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
.+.++.|++++. ||...|..+.|-.+|+.|++++.||.|++|+++++++.+.+. +|...|+. ++.+| +
T Consensus 533 ~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~DrvWa--L~~~~-~ 600 (775)
T KOG0319|consen 533 SISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDRVWA--LSVSP-L 600 (775)
T ss_pred Eeccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccceeEE--EeecC-c
Confidence 999999999998 899999999999999999999999999999999999999988 99999997 55556 5
Q ss_pred CCEEEEEeCCCcEEEEeccCCC
Q 001258 1059 PNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1059 ~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+..+++|+.||.|.+|.-.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999755544
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-54 Score=464.35 Aligned_cols=546 Identities=13% Similarity=0.195 Sum_probs=451.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-CCcceEEEEEcCCCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 435 (1113)
..+.+++++.+||+++ |++++....+++|++.+|+.+.. ... |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 4578999999999995 88999999999999999987652 444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCcCEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 514 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~ 514 (1113)
|+|+.|+.|+|||+..+.+.. .|+||.+.|+++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998777 79999999999999999886678999999999999999655 48889999999999
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
++|.++ +..+++++.|..+.+||+.+.+....++.. ..+.++.+-+++. ...+.++++++.
T Consensus 198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 997654 578999999999999999765555544432 2344554444311 011458999999
Q ss_pred CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1113)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1113)
+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+. ++.+.+-|....+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 9999999999998876654432 223666666666667777788899999998888 77888877777655 2
Q ss_pred cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1113)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1113)
+...+ ++...+++++....+++|++.+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 23333 56788999999999999987764322 21 4699999
Q ss_pred EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC-CEE
Q 001258 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 833 (1113)
Q Consensus 755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~-~~l 833 (1113)
.++....+|..|++++.|.++++|.++.... ..... ..+.+|.+.|.+++++..+ .++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence 9999888889999999999999998742111 00111 1223499999999998665 477
Q ss_pred EEEe-CCeEEEEECCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258 834 MSAS-GGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 834 ~~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
++++ |.+|++|++...+. ..+...|...|+|++++| +.+++|+|+.|.+.+||+++......+|.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 99999999975221 123457899999999999 889999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCc
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~ 982 (1113)
.|+++.|++..+.|+|+|.|+||+||.+++.. +++.++||.. .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 99999999999999999999999999999954 6788888885 8999999999999999 6999999999999
Q ss_pred cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
.+|..++. .|...|.+++.++++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999876 8999999999999999999999999999996544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-50 Score=414.06 Aligned_cols=579 Identities=15% Similarity=0.159 Sum_probs=439.1
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+.-.-+.-.|.|..+|.+ ....|.+-++++..... ++.+|...++-..|||.|.|+|+|
T Consensus 19 g~~~~ig~dpkgd~ilY~--nGksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASG 77 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYT--NGKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASG 77 (603)
T ss_pred CcceEeccCCCCCeEEEe--CCCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeec
Confidence 334455667888877765 34678888887765543 578999999999999999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1113)
...|.|+|||....+.+ ...++..-.++|..++|+.|+++ +.++| +.++..+++-.++|..+..+.||...|+++.|
T Consensus 78 D~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred CCcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 99999999998874433 23367778899999999999996 33333 33444444444578889999999999999998
Q ss_pred eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1113)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1113)
-++.. -.+++|+.|++|.+|+-..-+-...+..|...|.++.|+|||. ++++.+.||+
T Consensus 156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~---------------------~Fat~gsDgk 213 (603)
T KOG0318|consen 156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS---------------------RFATAGSDGK 213 (603)
T ss_pred cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC---------------------eEEEecCCcc
Confidence 87654 5799999999999996554444444555666666666666555 7999999999
Q ss_pred EEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258 598 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1113)
Q Consensus 598 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1113)
|.+||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+.+++.-...
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~-------------- 278 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST-------------- 278 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc--------------
Confidence 9999999999999997 3345668999999999999999999999999999988 56655532111
Q ss_pred cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1113)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1113)
.-.....+.+....+++.+.+|+|.+++.......... .+|...|++
T Consensus 279 --------------------------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITa 325 (603)
T KOG0318|consen 279 --------------------------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITA 325 (603)
T ss_pred --------------------------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeE
Confidence 00112233445788999999999999998875522222 469999999
Q ss_pred EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 836 (1113)
++.++++++|++++.||.|.-|+...+.. ..+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTS------------------------DRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccc------------------------cccccccccceEEEEeecCCCcEEEEe
Confidence 99999999999999999999998764322 113334599999999999888888888
Q ss_pred eCCeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258 837 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 837 sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1113)
-|.++++.++........ ++-.. ...+++..+ ++.+++.++.++.+.+-|...-. ... -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCC
Confidence 899999999865433322 12122 234888888 66677777766555554443221 111 22346789999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCC
Q 001258 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE 993 (1113)
Q Consensus 915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~ 993 (1113)
..++.|+.|+.|+||.+...+...... ...|. ++|+.++||||+.+||++ ..+.+.+||+.+.+...... .-
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~---~~~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-~F 528 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAK---LLEHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-AF 528 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceee---eeccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-ee
Confidence 999999999999999999866432211 12222 489999999999999997 67899999999988733322 25
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
|...|.+++|+|+++++|+|+.|..|.||+++.-...-. ....|...|.. +.|. |...|++.+.|.+|++
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~------iknAH~~gVn~--v~wl--de~tvvSsG~Da~iK~ 598 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII------IKNAHLGGVNS--VAWL--DESTVVSSGQDANIKV 598 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE------eccccccCcee--EEEe--cCceEEeccCcceeEE
Confidence 899999999999999999999999999999976544322 23478777886 6776 5689999999999999
Q ss_pred Eecc
Q 001258 1074 FEPL 1077 (1113)
Q Consensus 1074 W~~~ 1077 (1113)
|++.
T Consensus 599 W~v~ 602 (603)
T KOG0318|consen 599 WNVT 602 (603)
T ss_pred eccc
Confidence 9975
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-50 Score=427.57 Aligned_cols=570 Identities=19% Similarity=0.308 Sum_probs=442.6
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
..+.+...|++++.||+|.. |++-...|...+-++.....+++++| ..+|.|+.|||||
T Consensus 50 l~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng 108 (893)
T KOG0291|consen 50 LPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG 108 (893)
T ss_pred EEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence 33448999999999999995 66667889999999988888776544 3489999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce-----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce--eeEe
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~ 505 (1113)
+++|+|. .+.+.||....... .....++.+|...|.++.|+.|.+ +|++||.|.++++|+++..+- .+.+
T Consensus 109 ~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l 185 (893)
T KOG0291|consen 109 KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL 185 (893)
T ss_pred cEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence 9999886 45699998764322 233456779999999999999999 899999999999999986655 5678
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-----eC---------CCCceEEEEEccCCCeEEec
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~~ 571 (1113)
.+|.+.|.+.-|. .+...+++.+.||.+.+|..........- .+ ....+....|.. .++.+..
T Consensus 186 ~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k-~~k~~ln 262 (893)
T KOG0291|consen 186 NGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK-TKKHYLN 262 (893)
T ss_pred cCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE-EEeeeec
Confidence 8999999887654 34467999999999999987732111100 00 000111111111 0122222
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-CcEEEEEcCCC
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG 650 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~ 650 (1113)
.....+.+.+|++..+.|++|-..|...+|.+....+++.+....+ .|..++|+..|.+|+.|+.. |.+.+|+..+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 2335788999999999999999999999999999999999976644 69999999999999998764 78889987655
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
..+-..
T Consensus 341 -sYVlKQ------------------------------------------------------------------------- 346 (893)
T KOG0291|consen 341 -SYVLKQ------------------------------------------------------------------------- 346 (893)
T ss_pred -ceeeec-------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
.+|...+.+++++|||+.+++|++||.|+|||.. +|.+...
T Consensus 347 -----------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT 387 (893)
T KOG0291|consen 347 -----------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT 387 (893)
T ss_pred -----------------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE
Confidence 3478899999999999999999999999998765 4443332
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCC-cEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIY 887 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg-~v~iw 887 (1113)
+. .|...|+++.|+.+|+.+++.+ ||+|+.||+...+..+++..... ...|++..| .|.++.+|+.|. .|+||
T Consensus 388 -Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 388 -FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVW 463 (893)
T ss_pred -ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEE
Confidence 22 3999999999999999999999 99999999999999999875443 467888888 899999998876 89999
Q ss_pred EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l 967 (1113)
++.+|+++..+.||.++|.+++|+|++..|+|+|.|.+|++||+-..... .+.+.+. ..+..++|+|||+.+
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKEL 535 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeE
Confidence 99999999999999999999999999999999999999999998764221 1122222 257899999999999
Q ss_pred EE-EcCCeEEEEeCCccceeecccc------------------CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258 968 LV-VHETQLAIFETTKLECVKQWVP------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus 968 ~~-~~d~~v~v~d~~~~~~~~~~~~------------------~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
++ .-||.|.+||...+..+..+.. .......+.+++|+||.+|++|+....|++|++.++-
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99 5899999999987665533221 0124679999999999999999999999999999987
Q ss_pred eeeecCCCc--------------------------------------ccCCCc----------ccCccceEEEEeCCCCC
Q 001258 1029 LRCRINPSA--------------------------------------YLPAGV----------SSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus 1029 ~~~~~~~~~--------------------------------------~~~~gh----------~~~v~~i~~~~~p~d~~ 1060 (1113)
++.+++... .+| |. ...|....+.|+| .|+
T Consensus 616 llkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lp-G~~~gdlssRr~rpeIrv~sv~fsP-tgr 693 (893)
T KOG0291|consen 616 LLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALP-GVQRGDLSSRRFRPEIRVTSVQFSP-TGR 693 (893)
T ss_pred eeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCC-ccccCCccccccCceEEEEEEEECC-CcC
Confidence 777665321 011 00 1134455799999 578
Q ss_pred EEEEEeCCCcEEEEeccCC
Q 001258 1061 EFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1061 ~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
-++.++..| |.|+.+.+.
T Consensus 694 aFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 694 AFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred eeeeecccc-eEEEecCCc
Confidence 888888777 677777553
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-54 Score=422.43 Aligned_cols=377 Identities=20% Similarity=0.344 Sum_probs=306.6
Q ss_pred CCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC
Q 001258 339 QAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418 (1113)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1113)
++.+......++-...-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+..... +.++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg 155 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG 155 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence 3445666667777777789999999999999996 9999999999999999877665 5899
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-----CCCeeEEEEecCCCcEEE
Q 001258 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----~~~~~~l~s~s~d~~i~i 493 (1113)
|...|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI 231 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI 231 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence 999999999999999999999999999999999987754 6889999999999965 455 7999999999999
Q ss_pred EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
||+..+.++..+.||+.+|+|++|-. + .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+.|--
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~------- 301 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV------- 301 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-------
Confidence 99999999999999999999999742 3 4999999999999999999888999999999999999887643
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
|-+|..|.+ +........... ...-+....-..+..|++|++|.++.+|+.....+
T Consensus 302 ---------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 302 ---------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred ---------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 222222111 100000000000 00000011111235566666666666665322211
Q ss_pred ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1113)
++..
T Consensus 359 pi~r---------------------------------------------------------------------------- 362 (480)
T KOG0271|consen 359 PITR---------------------------------------------------------------------------- 362 (480)
T ss_pred chhh----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1113)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 812 (1113)
+
T Consensus 363 -------------------------------------------------------------------------------m 363 (480)
T KOG0271|consen 363 -------------------------------------------------------------------------------M 363 (480)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
. +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus 364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 1 2788889999999999999999 99999999999999999999999999999999 999999999999999999999
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999995
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-49 Score=420.88 Aligned_cols=609 Identities=14% Similarity=0.198 Sum_probs=450.9
Q ss_pred CCcEEEEE-cCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 359 SSPMSMDF-HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 359 ~~V~~~~~-spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
..+..+.. +..|++ ++++....|.+||+.+|+..... +.......|+|+.-+||.-+||+
T Consensus 22 aN~~~~~~~~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAV 82 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAV 82 (888)
T ss_pred cceeEEEeecCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEE
Confidence 33443333 345775 33445668999999999554310 12234468999999999999999
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1113)
|..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|
T Consensus 83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 9999999999999876444 7999999999999999999 7999999999999999988888999999999998776
Q ss_pred eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1113)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1113)
.. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.
T Consensus 158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse 212 (888)
T KOG0306|consen 158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSE 212 (888)
T ss_pred cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCc
Confidence 53 337999999999999999999888888888888787777765 24899999999
Q ss_pred EEEEECCCCc------------eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc----cc
Q 001258 598 IKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN----LA 661 (1113)
Q Consensus 598 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~ 661 (1113)
+++|++.... ....+...+ ......+...++++++++-+.|..+.++.+.+..+..+.+.. ..
T Consensus 213 ~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K 291 (888)
T KOG0306|consen 213 LKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAK 291 (888)
T ss_pred eEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhh
Confidence 9999982210 111121111 223456777788999999999999999998776444333321 00
Q ss_pred cccc-ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCC-cceeeccCCCceeeEeccCCCCC--
Q 001258 662 YDAS-RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELSEP-- 737 (1113)
Q Consensus 662 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~-- 737 (1113)
.... ..+...+ ..+... -..........+.. . +.+....... ..++. -.++++..|.++.....
T Consensus 292 kka~t~e~~~~v-~~sl~~-----~i~r~~~ir~~~ki---k--s~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 292 KKAETEENEDDV-EKSLSD-----EIKRLETIRTSAKI---K--SFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSP 359 (888)
T ss_pred hhccccccccch-hhhHHH-----HHHHHHheechhhe---e--EEEEEecCCcceeEEE-eecCceEEEEeccCCCCCc
Confidence 0000 0000000 000000 00000000000000 0 0000001111 23333 55678888887762211
Q ss_pred CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 817 (1113)
...+.-.+...+|...|.+++++.+...++ .+.++.+++|+.. +.+.+... .
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~~----------------------t~kciRTi-----~ 411 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNRD----------------------TLKCIRTI-----T 411 (888)
T ss_pred cccccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEcc----------------------CcceeEEe-----c
Confidence 112222233356999999999999987444 4445678877654 44433321 2
Q ss_pred CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-----
Q 001258 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----- 891 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----- 891 (1113)
...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|.+++.+| |++.+++|+.|.+|++||..-
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC
Confidence 34778899999999999999 79999999999999999999999999999999 999999999999999999752
Q ss_pred ceeeeeec-------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 892 DEVKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 892 ~~~~~~l~-------~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
+...+.+. .-.+.|.|+.+||||++|+.+=-|.+|+||-+++ ..+.-.+.||.- +|.++.+|||+
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DS 562 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDS 562 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCc
Confidence 11111111 1346799999999999999999999999999998 334556778875 89999999999
Q ss_pred cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258 965 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus 965 ~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
+.+++ +.|++|++|-++=|.|.+.+. +|...|.++.|-|+..++++++.|+.|+-||-+..+.+..+. ||
T Consensus 563 klivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H 633 (888)
T KOG0306|consen 563 KLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GH 633 (888)
T ss_pred CeEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cc
Confidence 99999 589999999999999999998 899999999999999999999999999999999999999888 99
Q ss_pred ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
...|+. ++-+| +|.++++++.|.+|++|.-..
T Consensus 634 ~~ev~c--Lav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 HSEVWC--LAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeee--eEEcC-CCCeEEeccCCceeEeeeccC
Confidence 999996 66667 789999999999999998655
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-47 Score=389.28 Aligned_cols=540 Identities=16% Similarity=0.210 Sum_probs=422.9
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+...-.|...++-..|||.|-| +|+|...|+|+|||....+.+...+|+ --.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 4455569999999999999996 999999999999999875555444433 2345899999999
Q ss_pred CCCeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 431 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 431 dg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
|+++|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.... .++||++|++|.+|+=.--+...++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999987643 3455666 454454 78899999999999998775 89999999999999855455556778
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee---CCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.|...|.++.|+ +||..+++.+.||.+.+||-.+++....+. .|.+.|.+++|+||++
T Consensus 188 ~HskFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~----------------- 248 (603)
T KOG0318|consen 188 EHSKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST----------------- 248 (603)
T ss_pred ccccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence 899999999976 457899999999999999999999888877 6777788888777776
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCC-CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1113)
.+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++..++ ..++.+.+|..
T Consensus 249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK 321 (603)
T KOG0318|consen 249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK 321 (603)
T ss_pred ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccc
Confidence 6999999999999999999999988654321 122345555 668899999999999999999 48899999988
Q ss_pred cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1113)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1113)
.+... ...+++.++.+++.||.|.-|+...+......
T Consensus 322 ~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~-- 358 (603)
T KOG0318|consen 322 SITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA-- 358 (603)
T ss_pred ceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc--
Confidence 66532 23457899999999999999999875543322
Q ss_pred cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1113)
Q Consensus 743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~ 822 (1113)
...|...|.+++.+..+. +++.+-|.++++.++......... .. .......
T Consensus 359 ----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~ 409 (603)
T KOG0318|consen 359 ----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPK 409 (603)
T ss_pred ----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCce
Confidence 245899999999888776 788888889998776432221100 00 0234455
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee--eeecc
Q 001258 823 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKG 900 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~~ 900 (1113)
+++..+++.+++.+.++.|.+..-.+ .+.... ..-...+++++| ++..+|+|+.||.|+||.+..+.+. ..+..
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~ 485 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE 485 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeec
Confidence 89999998888888877777765322 222222 334578999999 9999999999999999999875533 45677
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1113)
Q Consensus 901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d 979 (1113)
|.++|+++++|||+.+||++...+.|.+||+.+.+... ....-|. ..|.+++|+|+.+++|+ +-|..|.||+
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999999999999866521 1112233 37999999999999999 5899999999
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
++..... .....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus 559 v~kP~~~-i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 559 VKKPAKH-IIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccChhhh-eEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 9876655 223358888899999975 4567888899999999874
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-47 Score=409.19 Aligned_cols=512 Identities=13% Similarity=0.216 Sum_probs=406.9
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
...+|+|+.-+||.- +||.|-.||.|+||+..++..+. .+.||...|+++.|+..|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence 446899999999987 69999999999999999876554 4889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+||.|+.|.|||+-...-+. .++||.+.|+..-|..+.+ ++++.|.|+.|++||+++..|..+...|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998755443 6899999999999998777 899999999999999999999999999999999999
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCe------e------ee-eCCCCceEEEEEccCCCeEE--------------
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------V------DY-EAPGRWCTTMAYSADGTRTY-------------- 569 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~------~~-~~~~~~v~~~~~s~~~~~~~-------------- 569 (1113)
+.. +.+++++.|+.+++|++....-. . .+ ....+....+...++++.++
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 764 58999999999999998321100 0 00 11111222233333332000
Q ss_pred -----------------------------------------eccccCceeEEEecCCCC---EEEEEecCCcEEEEECCC
Q 001258 570 -----------------------------------------QGFRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS 605 (1113)
Q Consensus 570 -----------------------------------------~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 605 (1113)
.-.....+..+++-|.++ .|+. -.++++..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN 353 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence 001122344566655543 3333 6788899988765
Q ss_pred -Cc------eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258 606 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1113)
Q Consensus 606 -~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1113)
+. .+..+...+|...|.+++++.+...+++|+. +.+++|+..+. ++++++.
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi~-------------------- 411 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTIT-------------------- 411 (888)
T ss_pred CCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEec--------------------
Confidence 22 2334555566778999999998887777665 79999999887 5555442
Q ss_pred hhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEE
Q 001258 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1113)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 758 (1113)
...+.+..
T Consensus 412 ------------------------------------------------------------------------~~y~l~~~ 419 (888)
T KOG0306|consen 412 ------------------------------------------------------------------------CGYILASK 419 (888)
T ss_pred ------------------------------------------------------------------------cccEEEEE
Confidence 23567888
Q ss_pred EeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-
Q 001258 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 837 (1113)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s- 837 (1113)
|-|.+++++.|..+|.+.+||+... .++.. .. .|.+.|.+++.+||++.+++|+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~----------------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASA----------------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehh----------------------hhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence 9999999999999999999987532 11111 11 3999999999999999999999
Q ss_pred CCeEEEEECCC-----Ccee--------eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258 838 GGKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1113)
Q Consensus 838 dg~i~vwd~~~-----~~~~--------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1113)
|.+|++||..- +... ++++ -...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-+
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 99999999741 1111 1222 345799999999 9999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcc
Q 001258 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL 983 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~ 983 (1113)
|.|+..|||++.++|||.|.+|+||-++-|.|.++ .-+|. ..|.++.|-|+...+.+ |.|+.|+-||....
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----FFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhh-----hhccc---CceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 99999999999999999999999999999876443 33343 37899999998888877 69999999999999
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
++++.+. +|...|.|++.+|+|.++++++.|.+|++|.-....+
T Consensus 625 e~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 625 EEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred hhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999887 8999999999999999999999999999998765433
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-49 Score=393.18 Aligned_cols=367 Identities=20% Similarity=0.279 Sum_probs=290.5
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999977554 8999999999999999999 79999999999999
Q ss_pred eCCCCcee-eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 495 DATNGAKQ-YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 495 d~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
|.++|+++ +.|.+|...|++++|.|-. +. |
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h----l~-----------------------------------p---------- 215 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH----LV-----------------------------------P---------- 215 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc----cC-----------------------------------C----------
Confidence 99998876 5899999999999987642 11 1
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
..++|++++.||.|+|||+..+.++..+.+| +..|+|+.|.-+| ++++|+.|++|++|+..+| .+
T Consensus 216 -----------~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-~~ 280 (480)
T KOG0271|consen 216 -----------PCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-KL 280 (480)
T ss_pred -----------CccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCc-eEEecCCCceEEEEEccch-hH
Confidence 1124888999999999999999999998876 6689999998765 8999999999999999988 77
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
.+.+.+|...
T Consensus 281 ~r~lkGHahw---------------------------------------------------------------------- 290 (480)
T KOG0271|consen 281 CRELKGHAHW---------------------------------------------------------------------- 290 (480)
T ss_pred HHhhcccchh----------------------------------------------------------------------
Confidence 7777776543
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
|..++++.+-- |-++.-| +.+...... + ......+
T Consensus 291 --------------------vN~lalsTdy~-LRtgaf~--------------~t~~~~~~~--------s-e~~~~Al- 325 (480)
T KOG0271|consen 291 --------------------VNHLALSTDYV-LRTGAFD--------------HTGRKPKSF--------S-EEQKKAL- 325 (480)
T ss_pred --------------------eeeeeccchhh-hhccccc--------------cccccCCCh--------H-HHHHHHH-
Confidence 33333332211 1111111 100000000 0 0000000
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
.-+..+.-..+..|++|+ |.++.+|+-. +.+++....+|..-|+.+.||| |++++|+++-|..|++||..+
T Consensus 326 ------~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 326 ------ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred ------HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC
Confidence 001112223457899999 7899999976 4457788899999999999999 999999999999999999999
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~ 971 (1113)
|+.+..|+||-+.|+.++|+.|.++|+|||.|.++++|++.+.+. ..
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~---------------------------- 445 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ---------------------------- 445 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc----------------------------
Confidence 999999999999999999999999999999999999999988321 11
Q ss_pred CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
...+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 446 ------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 ------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1127788899999999999999999999888885
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-45 Score=390.10 Aligned_cols=546 Identities=15% Similarity=0.238 Sum_probs=422.2
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1113)
-.+.|++||.. +++ ...+.|.++|+.+++... +.-.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 34789999986 443 457899999998876543 233567789999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--------eeeEeeccCcCEE
Q 001258 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 513 (1113)
Q Consensus 442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 513 (1113)
|...+-++.....++ .+ .-+.+|.|+.|||||+ ++|.|. .+.+.||...... ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 998888887765444 22 2356899999999999 455544 5789999865422 2356779999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
++.|+.+ ..+|++|+.|-++++|+++..+. ...+.+|...|.+.-|..+.. .+++
T Consensus 150 si~Ws~D--Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~---------------------~l~t 206 (893)
T KOG0291|consen 150 SIDWSDD--SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL---------------------DLYT 206 (893)
T ss_pred EEEeccC--CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc---------------------eEEE
Confidence 9998754 47999999999999999987666 334555666666665555544 5889
Q ss_pred EecCCcEEEEECCC-----------------------Cce-----E----EEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258 592 AGDDFSIKFWDMDS-----------------------VQL-----L----TSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~-----------------------~~~-----~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 639 (1113)
.+.||.+.+|.... ++. . ...-.......|++.+|++..+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 99999999998761 110 0 001111122467888888888888888888
Q ss_pred CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1113)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1113)
|.+.+|.+.+- .+++.+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 88888877554 3332221
Q ss_pred ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeeeecCe
Q 001258 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 798 (1113)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1113)
....+|..++|+..|.+|+.++.. |.+.||+++...+
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------- 342 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------- 342 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence 134678999999999999998887 9999999875432
Q ss_pred ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1113)
Q Consensus 799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 877 (1113)
.++.++|...+.+++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++
T Consensus 343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 123345999999999999999999999 89999999999999999999999999999999 8999999
Q ss_pred EecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccccccCCCCCCCCCCC
Q 001258 878 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1113)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1113)
.+-||+|+.||+..++..+++.... -...+++..|.|..++.|+.|. .|++|++++|+ .+.++.||.. +|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence 9999999999999999888887543 3456788888899999998885 69999999965 5788888885 99
Q ss_pred ceEEEccCCcEEEE-EcCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 956 TRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 956 ~~~~~spdg~~l~~-~~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
.+++|+|+|..|++ +-|++|++||+-... .+.++ .+...++.++|+|||+-|+++..||.|.+||...+.....+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 589999999985442 22222 34778999999999999999999999999999877666444
Q ss_pred CCCcccCCCc-------------ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC--ccccCCCCC
Q 001258 1034 NPSAYLPAGV-------------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPV 1089 (1113)
Q Consensus 1034 ~~~~~~~~gh-------------~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~ 1089 (1113)
....-+..|. .-..+ .+.+++ ||..+++|+..+.|+++++.++- .+|++....
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ft--ti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFT--TICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred cchhhccccccccceeehhhcccCCceE--EEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 3211111110 11122 577777 89999999999999999999887 556655543
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-46 Score=395.59 Aligned_cols=636 Identities=15% Similarity=0.173 Sum_probs=433.7
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe-
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1113)
-..++.+|... ++|. -....|.+||+...++-+ ++..|..+++|++||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566666655 2332 335678899987655433 5778888999999999999999984
Q ss_pred -CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 440 -~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
....++||++.....+. +|..|+-.|+|++|+|.++ |+++.+. |-.|.+||++.......-+ -...|.+++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 66779999999877665 7889999999999999999 6777664 5578889887544333222 345678788
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCeee-eeCCCC----------------------ceEEEEEccCCCeE-----
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGR----------------------WCTTMAYSADGTRT----- 568 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~----------------------~v~~~~~s~~~~~~----- 568 (1113)
| +.+|.|+++.+ ...|++|.++...+... ++..+. .-...+++..|...
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR 249 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR 249 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence 5 46778998876 67899999876552210 111000 00223333333211
Q ss_pred --E---eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc----------------------CCCCCCc
Q 001258 569 --Y---QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS 621 (1113)
Q Consensus 569 --~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v 621 (1113)
+ ...+.....+++. ...++++|+.+|.|++|+..+.....++.. .......
T Consensus 250 RLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 250 RLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 0 0111122233443 456899999999999999876554433321 1112234
Q ss_pred CeEEECCCCCEEEEEECCCcEEEEEcCCCccceec--cccccccccccCCCCCCCcccchhhhhhhhccccccccccccc
Q 001258 622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT--FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699 (1113)
Q Consensus 622 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1113)
..+.|++....|.+..+|+.+++||+.+-.+.-+. +-.|+.-+ +.+ ...
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ci-----W~V------------------------e~~ 378 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACI-----WDV------------------------ENL 378 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecccee-----eee------------------------ccc
Confidence 57889999999999999999999999876333221 11121111 111 111
Q ss_pred ccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE-EE
Q 001258 700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LW 778 (1113)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~-vw 778 (1113)
+.....+...+.|.+ -+++++.|++|++|++.........+. -.++.+-..++ ..|+... +.
T Consensus 379 p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR--------------Nils~~l~ki~--y~d~~~q~~~ 441 (1080)
T KOG1408|consen 379 PCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR--------------NILSANLSKIP--YEDSTQQIMH 441 (1080)
T ss_pred cccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeec--------------ccchhhhhcCc--cccCchhhhh
Confidence 111223334444444 389999999999999986322222110 01111110011 1111100 00
Q ss_pred EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC
Q 001258 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 857 (1113)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~ 857 (1113)
|... .++|-.... . ......+++++++|+|++||+|. .|+|+||++...+....++.
T Consensus 442 d~~~---------------~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA 499 (1080)
T KOG1408|consen 442 DASA---------------GIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA 499 (1080)
T ss_pred hccC---------------Ccccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec
Confidence 1000 011110000 1 11567799999999999999998 79999999999999999999
Q ss_pred CCCCeeEEEEecC--CCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEEEEEcCCC--CEEEEEeCCCcEEEEeCC
Q 001258 858 PPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 858 ~~~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~L~s~s~D~~v~iwd~~ 932 (1113)
|...|.|+.||-. ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.| ..+++++.|+.|++--.+
T Consensus 500 HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 500 HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence 9999999999852 357999999999999999964 57789999999999999998777 789999999977644332
Q ss_pred CCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEE
Q 001258 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l 1010 (1113)
... ...+-....+......++.++..|..+++++ +.|+.|+||++..|+..+.|.. ++|.+....+...|.|-||
T Consensus 580 k~~---~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 580 KAS---SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred ccc---CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE
Confidence 111 1111111112222246789999999999999 7999999999999999999985 3567888999999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC-----ccccC
Q 001258 1011 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKWGV 1085 (1113)
Q Consensus 1011 ~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-----~~~~~ 1085 (1113)
++.+.|+++.++|+.+|+++++.. ||+..|+. +.|.+ |.+.|++.+.||+|+||.++... .....
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~-------GHsE~VTG--~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMT-------GHSEAVTG--VKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhc-------Ccchheee--eeecc-cchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence 999999999999999999999987 99999997 78888 77899999999999999998643 22233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 001258 1086 PPPVDNGSTSSMPATPPVGGSGSD 1109 (1113)
Q Consensus 1086 ~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1113)
.+-...+..-..|..|.+++.+++
T Consensus 727 lr~rq~~~~~~~pl~p~~p~d~~~ 750 (1080)
T KOG1408|consen 727 LRVRQLEKFIAVPLEPDNPNDASC 750 (1080)
T ss_pred HHHHhccCCcCCCCCCCCCCCCcc
Confidence 344456666666667766666554
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-40 Score=353.65 Aligned_cols=551 Identities=13% Similarity=0.139 Sum_probs=374.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
|..+++|++||++|+| +|+|- ..-.++||+++....+. .+..|.-.|+|++|||.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCcE
Confidence 8899999999999996 99986 34579999999877655 37889999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE--------
Q 001258 435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-------- 504 (1113)
Q Consensus 435 las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------- 504 (1113)
+++.+. |..|.+||++.+.... -..-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998764 5678899887654332 223456899999999999 788887 57899999886652110
Q ss_pred -----e------------------------ecc-----------------CcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 505 -----F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 505 -----~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
+ .|| +....|++++ . .+|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~--r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S--RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c--ceEEEeeccceeeec
Confidence 0 011 1112334432 2 689999999999999
Q ss_pred EcCCCCCeeeeeCCCC---ceEEEEEccCCCeEEeccccC---ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258 539 LYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1113)
Q Consensus 539 d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1113)
+..+..-..+++.... .+..+. .-..+..+.... ..-.+.|++...+|.+...|..++|||++.-..+...
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~---q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~ 362 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLS---QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC 362 (1080)
T ss_pred Ccchhhhccccccccccccchhhcc---cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce
Confidence 8877655544432211 111111 011122222211 2234678889999999999999999999874322111
Q ss_pred -ccCCCCCCcCeEEECCC-----------CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchh
Q 001258 613 -DADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA 680 (1113)
Q Consensus 613 -~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1113)
..--|...|+.+.--|- ...+++++.|++||+|++..+. --..+......
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils----------------- 424 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILS----------------- 424 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccch-----------------
Confidence 11112223444433331 2358999999999999987631 11111000000
Q ss_pred hhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEe
Q 001258 681 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT 760 (1113)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 760 (1113)
.+.+-.-..|++..+..........+ . ..........+.+++++
T Consensus 425 ---------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdk-a--~~s~~d~r~G~R~~~vS 468 (1080)
T KOG1408|consen 425 ---------------------------------ANLSKIPYEDSTQQIMHDASAGIFDK-A--LVSTCDSRFGFRALAVS 468 (1080)
T ss_pred ---------------------------------hhhhcCccccCchhhhhhccCCcccc-c--chhhcCcccceEEEEEC
Confidence 00000000011110000000000000 0 00001245678999999
Q ss_pred CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec---CCCEEEEEe
Q 001258 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS 837 (1113)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s 837 (1113)
|+|+.|++|..-|.++||+++.-.. + ..-..|...|.|+.|+. ..++||+++
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhh----------------------h---hheecccceeEEEeecCchhhhHhhhhcc
Confidence 9999999999999999999863211 0 11123999999999984 357899998
Q ss_pred -CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCC-cEEEEEecCCcEEEEEcccceeeeeecc-----cccCeEEEE
Q 001258 838 -GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLA 909 (1113)
Q Consensus 838 -dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~ 909 (1113)
|.-|.|||+. +...++++.+|...|+++.|...++ ..+++++.|..|.+--.....-...+.- ....+..++
T Consensus 524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 8899999996 4566788999999999999987332 5677888888776533322111112211 124688999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeec
Q 001258 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQ 988 (1113)
Q Consensus 910 ~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~ 988 (1113)
..|..+++++++.|..|+||++++++..+ .+.+.....+....+...|.|.|+++ +.|+++.++|.-+++|+.+
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k-----~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVK-----SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceee-----eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 99999999999999999999999977533 33333333356788999999999999 6999999999999999999
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
.. +|...|+.+.|++|.+.|++++.||.|.||.+...
T Consensus 679 m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 MT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 88 99999999999999999999999999999999754
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-40 Score=337.87 Aligned_cols=357 Identities=18% Similarity=0.319 Sum_probs=280.2
Q ss_pred CCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1113)
Q Consensus 346 ~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 425 (1113)
++|+...+.++|..+|.+.+|+|-..-++++|+.|-+.++|++......... ..++..+....- .-...+..|++
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~--~s~~~nkdVT~ 240 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGG--KSVPSNKDVTS 240 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhc--ccCCccCCcce
Confidence 4577777888899999999999988767999999999999998741111000 000000000000 01112357999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
++|+.+|.+||+|+.||.++||+...+. +. +|..|+++|.++.|+.+|. +|++++.|+++.+||..+|.....+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence 9999999999999999999999987653 33 6889999999999999999 8999999999999999999988888
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
.-|..+-..+.|-.. ..
T Consensus 315 ~~~s~~~lDVdW~~~---~~------------------------------------------------------------ 331 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN---DE------------------------------------------------------------ 331 (524)
T ss_pred eeccCCccceEEecC---ce------------------------------------------------------------
Confidence 877776444444211 12
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1113)
+++.+.|+.|+++.+...+++.++.+| ...|.++.|+|.|.+|++++.|++++||+.... .....+
T Consensus 332 ---F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l-------- 397 (524)
T KOG0273|consen 332 ---FATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL-------- 397 (524)
T ss_pred ---EeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--------
Confidence 566666777777777777788888775 558999999999999999999999999987655 222222
Q ss_pred ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1113)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1113)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1113)
Q Consensus 746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~ 825 (1113)
..|...|..+.++|.|.. .| +.
T Consensus 398 --~~Hskei~t~~wsp~g~v---------------------------------~~----------------n~------- 419 (524)
T KOG0273|consen 398 --QAHSKEIYTIKWSPTGPV---------------------------------TS----------------NP------- 419 (524)
T ss_pred --hhhccceeeEeecCCCCc---------------------------------cC----------------CC-------
Confidence 126677888888888750 00 00
Q ss_pred EecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258 826 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1113)
Q Consensus 826 ~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1113)
..+..+++++ |++|++||+..+.++..|..|..+|.+++|+| +|+++|+|+.||.|.||++++++..+...+- +.
T Consensus 420 --~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~ 495 (524)
T KOG0273|consen 420 --NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG 495 (524)
T ss_pred --cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-Ce
Confidence 1344566666 99999999999999999999999999999999 9999999999999999999999999888754 55
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 905 ITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
|..|+|+.+|..|..+-.|+.+++.|+.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999874
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=334.84 Aligned_cols=589 Identities=15% Similarity=0.161 Sum_probs=431.9
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+.|- ..|..-|..++++.+.+....+||.++-..+.. -..+...|+|++=.. .+..++
T Consensus 35 n~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~--~~vy~A 92 (910)
T KOG1539|consen 35 NGVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDK--DYVYVA 92 (910)
T ss_pred CCCc-eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecC--ceEEEe
Confidence 3444 667777777889999999999999987666542 345677899998654 444444
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-cee----eEeeccCcCEE
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ----YIFEGHEAPVY 513 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~----~~~~~h~~~v~ 513 (1113)
+. ..|.+|. .|+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ ... ..++...+.|+
T Consensus 93 ~g-~~i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~It 163 (910)
T KOG1539|consen 93 SG-NKIYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFIT 163 (910)
T ss_pred cC-cEEEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCcee
Confidence 33 3466664 3433332 56678877777663 466 6889999999999998874 221 12233333488
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
++. ||+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=. .++.|.
T Consensus 164 al~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~ 221 (910)
T KOG1539|consen 164 ALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGL 221 (910)
T ss_pred eEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEec
Confidence 775 4554445789999999999999999999999998888888887776443 488899
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCE-EEEEECCCcEEEEEcCCCccceeccc-cccccccccCCCC
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENS 671 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 671 (1113)
.+|+|.++|++.++.+..++... +.|++++|.-||+. +++|+..|.+.+||+... +.....+ .|...+
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv------- 291 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSV------- 291 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCc-------
Confidence 99999999999999999998763 47999999999875 566666799999999877 4433332 332211
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
....+.+....+++.+.|+.+++|-.+.+... .+.+... .+|.
T Consensus 292 ----------------------------------~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs 334 (910)
T KOG1539|consen 292 ----------------------------------TGATFLPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHS 334 (910)
T ss_pred ----------------------------------ccceecCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCC
Confidence 12344567788999999999999988754433 2222222 5799
Q ss_pred CceEEEEEe-CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258 752 TKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1113)
Q Consensus 752 ~~i~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~ 830 (1113)
.+..++.|- .+|..++.++.|++.+.+++....++..-.. +.....+..+.........-.+|..+++....
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccch
Confidence 999999997 7899999999999999888765433221111 11111111000000000022345666654321
Q ss_pred ----CEEEEEe--CCeEEEEECCCCce-eeeec-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258 831 ----SYVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1113)
Q Consensus 831 ----~~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1113)
.-++++. +..++.|+...... ...+. .....+++++.++ .|++.+.|...|.|-+|++.+|-....+
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeeccc
Confidence 1244443 57799999986544 23332 2346799999999 9999999999999999999999888888
Q ss_pred ---cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCe
Q 001258 899 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 974 (1113)
Q Consensus 899 ---~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~ 974 (1113)
..|.++|++++...-++.+++++.+|-+++||..+..... ...-+ ..+..+..+.....+++ ..|-.
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFS 557 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCcee
Confidence 5899999999998888999999999999999998854211 11112 35788888888888888 58889
Q ss_pred EEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus 975 v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
|+++|..+.+.++.|. +|+..|++++|||||++|++++.|++|++||+.++.++..+.. ...++.++|
T Consensus 558 I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----------d~~~~sls~ 625 (910)
T KOG1539|consen 558 IRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----------DSPCTSLSF 625 (910)
T ss_pred EEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----------CCcceeeEE
Confidence 9999999999999998 8999999999999999999999999999999999999987652 223446999
Q ss_pred eCCCCCEEEEEeCC-CcEEEEecc
Q 001258 1055 HPQEPNEFALGLSD-GGVHVFEPL 1077 (1113)
Q Consensus 1055 ~p~d~~~l~s~~~D-g~v~vW~~~ 1077 (1113)
+| +|++||+...| ..|++|.=.
T Consensus 626 SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 626 SP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CC-CCCEEEEEEecCceEEEEEch
Confidence 99 78999999999 789999643
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=333.24 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=259.4
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC--C
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 432 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 432 (1113)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. +|.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45678999999999999 59999999999999999887665 58999999999999996 6
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
..+|+|+.||++++|++.+...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||++++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999877665 7899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.+++|++ ||.+++|||.|..-++||++++.++..+.+|...|.++.|+|+|. .+++|
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 9999875 568999999999999999999999999999999999999998886 69999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
+.|++++|||++..+.+..+..| ...|+.+.|+| .|.+|++++.|++++||...+. .+++.+.
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------- 427 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------- 427 (459)
T ss_pred CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence 99999999999999998888877 55799999999 8899999999999999988777 5555443
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
+|.
T Consensus 428 -----------------------------------------------------------------------------GHe 430 (459)
T KOG0272|consen 428 -----------------------------------------------------------------------------GHE 430 (459)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 377
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWK 779 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~ 779 (1113)
+.|.++.+++|+..+++++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8899999999999999999999999984
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=333.79 Aligned_cols=285 Identities=18% Similarity=0.269 Sum_probs=260.1
Q ss_pred cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 463 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
+-..+|..+.|+.|++ .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4567899999999999 89999999999999999999999999999999999999986567899999999999999999
Q ss_pred CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcC
Q 001258 543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1113)
Q Consensus 543 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1113)
...+..+.+|...|..++|.|+|+ +|++++.|.+-++||+.++..+....+| ...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence 888889998888888777777776 7999999999999999999887776655 56899
Q ss_pred eEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccC
Q 001258 623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 702 (1113)
Q Consensus 623 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1113)
+++|.|||.++++|+.|..-+|||+.++ .++-.+
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L--------------------------------------------- 341 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFL--------------------------------------------- 341 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEe---------------------------------------------
Confidence 9999999999999999999999999888 222111
Q ss_pred CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
T Consensus 342 -------------------------------------------------------------------------------- 341 (459)
T KOG0272|consen 342 -------------------------------------------------------------------------------- 341 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCC
Q 001258 783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 861 (1113)
Q Consensus 783 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 861 (1113)
. +|...|.+++|+|+|-.||+|+ |++++|||++..+.+.++.+|..-
T Consensus 342 ------------------------------~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 342 ------------------------------A--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ------------------------------c--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 1 1777888899999999999998 999999999999999999999999
Q ss_pred eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 862 i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
|+.|.|+|..|.+|++++.|++++||...++.+++.+.||.+.|.++..++|+.+++|++.|.++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-37 Score=328.20 Aligned_cols=587 Identities=15% Similarity=0.191 Sum_probs=401.6
Q ss_pred eeEec-cCCCCcEEEEEcCCCC---eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258 351 VTRTL-NQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 351 ~~~~~-~h~~~V~~~~~spdg~---~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
+..++ +|..+|+|+.|-|+.+ + +++|+.||.|++|.+......... .+.+|...+ +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~~--~ 105 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKEC--V 105 (764)
T ss_pred eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcceeE--E
Confidence 34444 4999999999999887 5 899999999999999843332211 355665554 4
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccC--CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--cee
Q 001258 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG--GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQ 502 (1113)
Q Consensus 427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~--~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~ 502 (1113)
+++.......+...|+++.+||.+..+.. ....++--.+ --.|+++.++.+.++++.|+.+..|.++.-..+ +.+
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 44433333333368999999999655511 1112222222 235677778666657888888888999876544 455
Q ss_pred eEeeccCcCEEEEeeeecCC-ceEEEEEecCCcEEEEEcCCCCCeeee------e-CCCCceEEE----EEccCCCeEEe
Q 001258 503 YIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------E-APGRWCTTM----AYSADGTRTYQ 570 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~------~-~~~~~v~~~----~~s~~~~~~~~ 570 (1113)
..+.||.+.|.+++|..... ..+|+++|.|..||+|.+.-....... . ....++..+ .+--.-..++.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 68899999999999876544 568999999999999987643311100 0 000111100 00000012233
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc--eEEEEc--cC-CCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSID--AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
||.+ -+..+.|+|.+..|++++.|.++.+|...+.. .+.... .- +........-|+|+++.+++-+..|..++|
T Consensus 265 GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 265 GHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred Cccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4433 67778888888889999999999999876642 222222 11 122346789999999999999999999999
Q ss_pred EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 725 (1113)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 725 (1113)
...+..
T Consensus 344 kt~d~~-------------------------------------------------------------------------- 349 (764)
T KOG1063|consen 344 KTKDKT-------------------------------------------------------------------------- 349 (764)
T ss_pred eccCcc--------------------------------------------------------------------------
Confidence 732220
Q ss_pred eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258 726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805 (1113)
Q Consensus 726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g 805 (1113)
.|.... ...+|...|++++++|.|.++++.+.|.+-|+|..-..+.. |.-
T Consensus 350 --~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-------------wHE--- 399 (764)
T KOG1063|consen 350 --FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-------------WHE--- 399 (764)
T ss_pred --ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-------------eee---
Confidence 111100 00348899999999999999999999999998754311110 110
Q ss_pred cccccccCCCCCCCCccEEEEecCCCEEEEEeC-CeEEEEECC-------------------------------------
Q 001258 806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM------------------------------------- 847 (1113)
Q Consensus 806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~------------------------------------- 847 (1113)
+ .+.+-|...++|++|-+....+++|.| .-+|+|+..
T Consensus 400 --i---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 400 --I---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred --e---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0 111227788888888775556666664 557888731
Q ss_pred ------CCce---------------------------------eeeecCCCCCeeEEEEecCCCcEEEEEecC-----Cc
Q 001258 848 ------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SS 883 (1113)
Q Consensus 848 ------~~~~---------------------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~ 883 (1113)
+|.. ++.+.+|...|.+++.+| +++++|+++.. ..
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAV 553 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceE
Confidence 0000 012346778899999999 99999999854 37
Q ss_pred EEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 884 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 884 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
|++|+..+....+.+.+|+-.|+.|+|||||++|+++|.|+++.+|..........+. .....|. .-|..+.|+|+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-a~~k~Ht---RIIWdcsW~pd 629 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-ACLKAHT---RIIWDCSWSPD 629 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-ccccccc---eEEEEcccCcc
Confidence 9999999998889999999999999999999999999999999999986654433322 2233343 36889999999
Q ss_pred CcEEEE-EcCCeEEEEeCCcc--ceeeccccCCCCCCeeEEEECC-----CCCEEEEEeCCCcEEEEecCC-------Cc
Q 001258 964 QIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAAN-------LK 1028 (1113)
Q Consensus 964 g~~l~~-~~d~~v~v~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~vwd~~~-------~~ 1028 (1113)
++++++ +.|++|.+|..... +.+..+....++..|+.++|.| .+..++.|-..|.|.+|.... +.
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 999999 59999999999888 7777665567899999999976 233678888999999999651 11
Q ss_pred eeeecCCCcccCCCcccCccceEEEEeCC--------CC-CEEEEEeCCCcEEEEecc
Q 001258 1029 LRCRINPSAYLPAGVSSNVHPLVIAAHPQ--------EP-NEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1029 ~~~~~~~~~~~~~gh~~~v~~i~~~~~p~--------d~-~~l~s~~~Dg~v~vW~~~ 1077 (1113)
...... .....+|.+.|.. +.|.|. .+ ..|++|++|.+++++++.
T Consensus 710 ~~~~~~--l~~~~~~~~aV~r--l~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 710 FNLDTR--LCATIGPDSAVNR--LLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeccc--cccccChHHhhhe--eEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111 1112256677775 777764 12 237999999999999874
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-39 Score=349.23 Aligned_cols=276 Identities=18% Similarity=0.265 Sum_probs=236.6
Q ss_pred CCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE--e-eeeeee---------ccCCCCcc
Q 001258 344 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV--L-RNFKVW---------DLGACSMP 410 (1113)
Q Consensus 344 ~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~--~-~~~~~~---------~~~~~~~~ 410 (1113)
...+|.-+..+.. -...++|..||+|+. +||.|..|..|++|.+...+... . ..+.-. +.......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3445666777766 467899999999999 79999999999999998533111 0 000000 11111222
Q ss_pred cccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258 411 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1113)
Q Consensus 411 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 490 (1113)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++- .++||..+|+++.|+|.|- +|||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999988765 6789999999999999998 8999999999
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
.++|......+++.+.+|-+.|.|+.|+|+. .|+++||.|.+|++||+.++..+..+.+|.++|.+++|||+|+
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr---- 590 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR---- 590 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence 9999999999999999999999999998765 7999999999999999999999999988888888888888877
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+|++|+.||.|.+||+.+++.+..+..| .+.|.++.|+.+|..||+|+.|++|++||+..-
T Consensus 591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 7999999999999999999999999877 568999999999999999999999999998654
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=302.90 Aligned_cols=291 Identities=20% Similarity=0.312 Sum_probs=258.8
Q ss_pred Eecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 353 ~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
++|. |...|.++.|++|+++ ++++|.||.++|||..+..+.+. +.-....|..++|+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence 5555 9999999999999996 99999999999999998877763 3344669999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCC--c-eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258 432 GSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 508 (1113)
|+++|+|+-|+...||++.+. + ..+....+.+|.+.+.|+.|.+|+. |+|+|.|.+..+||+++|+.+..|.||
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999865 2 1234447889999999999999876 999999999999999999999999999
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 588 (1113)
.+.|.++.+.|+ +++.+++|+-|+..++||++.+...+.+.+|...|.++.|.|+|. -
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------a 243 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------A 243 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------e
Confidence 999999998875 668999999999999999999999999999999999988888886 5
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccC
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1113)
+++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L----------- 311 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL----------- 311 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-----------
Confidence 99999999999999999999999987777778999999999999999999999999997655 222222
Q ss_pred CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1113)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1113)
.
T Consensus 312 -------------------------------------------------------------------------------~ 312 (343)
T KOG0286|consen 312 -------------------------------------------------------------------------------A 312 (343)
T ss_pred -------------------------------------------------------------------------------e
Confidence 2
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~ 779 (1113)
+|.++|+++..+|||..+++++.|..++||.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3889999999999999999999999999983
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-37 Score=320.35 Aligned_cols=464 Identities=17% Similarity=0.259 Sum_probs=354.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+.++|-++.|+|...+ ++++-..|.|.|||.++...+.. +.-..-+|++..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 8899999999999996 77778899999999999877753 222345899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEEEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 515 (1113)
+|++|..|+||+..+++.++ .|.+|.+-|.+++..|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 7999999999999999999 8999999999999999865 6778999999999999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
+|+|..+ +.+++++.|++|++|.+.+..+..++.+|...|.++.+-+-|. ..+|++|+.|
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD 206 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD 206 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence 9998654 7999999999999999999999999999999999999887664 3579999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1113)
.+|+|||..+..|++++.+|. ..|..+.|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------- 266 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------- 266 (794)
T ss_pred ceEEEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence 999999999999999999774 47999999999999999999999999987654 2211110
Q ss_pred ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1113)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1113)
-...++.
T Consensus 267 -------------------------------------------------------------------------~gleRvW 273 (794)
T KOG0276|consen 267 -------------------------------------------------------------------------YGLERVW 273 (794)
T ss_pred -------------------------------------------------------------------------cCCceEE
Confidence 0234667
Q ss_pred EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
+++-.+.++.++.|.++|.+.+= .......+.++++|+.+-+
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence 77777777778888888877651 1222334566666665544
Q ss_pred EeC--CeEEEEE------CCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258 836 ASG--GKISLFN------MMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 836 ~sd--g~i~vwd------~~~~~~~----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
... -.+.+-. +..++.+ +.+-...-....++-+| +|++++++ .||.-.||..-..+ ..+.+
T Consensus 316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG 388 (794)
T KOG0276|consen 316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFG 388 (794)
T ss_pred cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccc
Confidence 431 1122222 2233222 11111112345678889 88877765 48999998632211 22456
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~ 983 (1113)
.-....|++|.+..++--.++.|+++ ++.+..++.. .-..+..--.|.+|.+..++.+++||.+++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence 66788999998888888888889998 4433211110 011233334566777788999999999999
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
+.++.+. -....+.|+.+|.+++.++.|. .++..
T Consensus 455 ~lVrrI~-----v~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 455 ELVRRIE-----VTSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred eEEEEEe-----eccceeEEecCCCEEEEEecCc-eeEEE
Confidence 9998875 3567899999999999888664 44443
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-37 Score=292.68 Aligned_cols=258 Identities=21% Similarity=0.314 Sum_probs=220.5
Q ss_pred eEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 352 ~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
.-++. |++.|+.++..+.+..++++++.|.++.+|++.......-. ....+.||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEcc
Confidence 34444 99999999999998889999999999999998764322111 1114889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc--
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-- 508 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-- 508 (1113)
||.+.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .+++||.|++|++||+. |.+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence 99999999999999999999997665 6889999999999999999 59999999999999965 5555555443
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 588 (1113)
.+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||. .
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------l 206 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------L 206 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------E
Confidence 7999999999998778999999999999999999888888999999888888888887 5
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
+++|+.||.+.+||++.++.+..+.. ...|.+++|+|+...|+.+.. ..|+|||+.++ ..+.
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~ 268 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE 268 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence 88899999999999999999888754 457999999998877766654 56999999887 4443
No 24
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=7e-36 Score=305.89 Aligned_cols=510 Identities=19% Similarity=0.248 Sum_probs=371.6
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCC--------cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcc
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 422 (1113)
....++|++.|-|++.+||.-+ +++|...| .|+|||..+-..+. ++..-...
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~G 156 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRG 156 (626)
T ss_pred cccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeeecccccceeee-------------------eecccccc
Confidence 4467789999999999999884 88887766 49999977655554 34455668
Q ss_pred eEEEEEcC--CCCeEEEE--eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 423 VNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 423 V~~l~~sp--dg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
|.|++||+ .|.+|+.- +.+..+.|||...+..... ...-.+.|....|.|.+.. ++++++ .+.+.+|+.+.
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~ 231 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRG 231 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccC
Confidence 99999999 45566654 4567799999998776653 4445678999999999986 566666 68999999998
Q ss_pred Cceee---Eeecc-CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 499 GAKQY---IFEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 499 ~~~~~---~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
+...+ .|..+ ...|.|++|.++. -+++|..+|.|.+|+..+.........|.+.|.+++...+|.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------- 300 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------- 300 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--------
Confidence 87654 34333 3668899976554 489999999999999977666555558888999999998887
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
|++|+.|..|..|| ..-+.++..+.....+.|+.++=...+ |++|...+.|..=.+.++....
T Consensus 301 --------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 301 --------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred --------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEE
Confidence 88899999999999 455555555555556667666554433 6666665555433333321110
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
T Consensus 364 -------------------------------------------------------------------------------- 363 (626)
T KOG2106|consen 364 -------------------------------------------------------------------------------- 363 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
..+|......++.+|+...+++++.|+.+++|+-.. -+|...
T Consensus 364 ------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~----------- 405 (626)
T KOG2106|consen 364 ------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI----------- 405 (626)
T ss_pred ------------EEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE-----------
Confidence 023667788999999999999999999999997111 122211
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD- 892 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~- 892 (1113)
...++.|+.|+|.| .+|.|. .|...|.|.++...+..-. ...+++++.|+| +|.+||+|+.|+.|+||-+...
T Consensus 406 --~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 406 --IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred --ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCC
Confidence 35678899999999 888888 8999999999855554444 378899999999 9999999999999999998753
Q ss_pred eeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258 893 EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1113)
Q Consensus 893 ~~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~ 971 (1113)
...... +.|..+|+.|.||+|+++|.+-+.|-.|..|.... +.... ++..+.|....-.|
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~t-------------s~kDvkW~t~~c~l---- 541 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQIT-------------SVKDVKWATYTCTL---- 541 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccccc-------------eecceeeeeeEEEE----
Confidence 222222 22448999999999999999999999999993322 21110 12233332211100
Q ss_pred CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus 972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
-.......|...|..++-+.+.+++++|.+.|+|++|..+..+..+.+. .-.+|++.|..
T Consensus 542 --------------GF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~vt~-- 601 (626)
T KOG2106|consen 542 --------------GFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH----EYGGHSSHVTN-- 601 (626)
T ss_pred --------------EEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce----eeccccceeEE--
Confidence 0001113557788888999999999999999999999998766554332 22389999996
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEec
Q 001258 1052 IAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus 1052 ~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
++|.-.| ..|++.+.|.+|..|++
T Consensus 602 V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 602 VAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEeeCC-ceEEecCCCceEEEEEe
Confidence 7777655 45666669999999987
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=318.57 Aligned_cols=545 Identities=13% Similarity=0.194 Sum_probs=407.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+.+.|+|++=..+-- .+|+ ...|.+|- .|+.+.. +..+|.+.|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~v---y~A~-g~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV---YVAS-GNKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE---EEec-CcEEEEEE--ccceEEE------------------EeccccceEEEEe--eecceEE
Confidence 789999988665543 3332 34566665 3433332 4667777777765 3589999
Q ss_pred EEeCCCeEEEEEccCC-ceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 437 VAYSRHIVQIYSYHGG-DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
++..++.+.||+..++ +.+....++. ...+.|+++.- |..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211111222 22223777653 4321114889999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
+.-+|- -..++.|..+|+|.+++++..+.+..+....+.|++++|..||.. .+++++.
T Consensus 208 ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~~ 265 (910)
T KOG1539|consen 208 IEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGRS 265 (910)
T ss_pred eccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEeccC
Confidence 985444 468999999999999999999999999888889999999999973 4788888
Q ss_pred CCcEEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC---ccceeccccccccccccCCC
Q 001258 595 DFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSEN 670 (1113)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~ 670 (1113)
.|.+-+||++..+.+..+. .| ...|....|.|....+++++.|+.+++|-..++ .+.++...||+.+...
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~---- 339 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC---- 339 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh----
Confidence 8999999999888777665 34 457899999999999999999999998865543 2445566677665442
Q ss_pred CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee--------
Q 001258 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS-------- 742 (1113)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------- 742 (1113)
+..++ ..+..+.+++.|++.+.+++.........-.
T Consensus 340 ----irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 340 ----IRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ----eeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 22221 2466778888899888888754322211111
Q ss_pred -ccc--CcccccCceEEEEEeCCC----ceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 743 -LRL--PENLRATKISRLIFTNSG----NAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 743 -~~~--~~~~~~~~i~~~~~s~~~----~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
... .......+|..+++...- .-++++.. +...+.|++..... |+..-..-+.
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~ 444 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF 444 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence 000 111233466777765431 12444444 47788888764221 1111100000
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
......+++++.++.|++.+.|. .|+|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|.+.+||..
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence 11456789999999999999998 899999999999888888 58999999999987 78899999999999999999
Q ss_pred cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-
Q 001258 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1113)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~- 969 (1113)
+..++..++- ...++++..+.....++.+..|-.|+++|+.+.+ ....+.||.. .|+.++|||||++|++
T Consensus 524 ~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 524 KKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISA 594 (910)
T ss_pred Ccceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence 8887777763 4568888888888899999999999999998833 3455666664 8999999999999999
Q ss_pred EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEec
Q 001258 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1113)
Q Consensus 970 ~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~ 1024 (1113)
+.|++|++||+.++.++-.+.. ..+.+++.|||+|.+||++..| .-|++|.=
T Consensus 595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6899999999999999988765 6799999999999999999988 55999964
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=284.46 Aligned_cols=285 Identities=16% Similarity=0.285 Sum_probs=244.7
Q ss_pred eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
.+|+||.+.|.++.|++|.+ .++++|.||.+.|||.-+....+.+.-....|..++|+|+. +++++|+.|+...||
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIY 124 (343)
T ss_pred EEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEE
Confidence 47999999999999999999 79999999999999999999999998889999999977654 799999999999999
Q ss_pred EcCCCC------CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258 539 LYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1113)
Q Consensus 539 d~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1113)
++.+.. ....+.+|.+.+.+..|..|+. |++++.|.+.-+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEEEe
Confidence 998652 2335777888888888877775 999999999999999999999999
Q ss_pred ccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258 613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1113)
Q Consensus 613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1113)
.+| ...|.+++++| +++.+++|+-|+..++||++.+ ...+.+.+
T Consensus 183 ~GH--~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g-------------------------------- 227 (343)
T KOG0286|consen 183 HGH--TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG-------------------------------- 227 (343)
T ss_pred cCC--cccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc--------------------------------
Confidence 866 55899999999 9999999999999999999877 44333321
Q ss_pred ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec
Q 001258 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1113)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 771 (1113)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc
Q 001258 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1113)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~ 850 (1113)
|...|.+++|.|+|.-+++|+ |++.|+||++..+
T Consensus 228 ---------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 228 ---------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred ---------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 555566666666666666666 5677777777666
Q ss_pred eeeeecC--CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001258 851 TMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 928 (1113)
Q Consensus 851 ~~~~~~~--~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~i 928 (1113)
.+..+.. ...+|++++||. .|++|++|..|..+.+||.-.++.+..|.||.++|.+|..+|||.-|+|||.|.+++|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred EEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 6666542 235799999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 001258 929 WS 930 (1113)
Q Consensus 929 wd 930 (1113)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=291.13 Aligned_cols=339 Identities=17% Similarity=0.249 Sum_probs=285.2
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+..|++.|.+++.+|+.+++|+|+.|....||++.+|+... .+.+|++.|+++.|+.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478899999999999999999999999999999999998554 7889999999999999999 89999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
...++.....+...-..+.-++|||.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 999999988887677788889999855 7999999999999999998777778888888888777777776
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
.++++..||+|++||+.++.++..+....+ ....++.++..+..++.|..++.+.+.+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 689999999999999999999999875553 35789999999999999999999998877666 222
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
....+
T Consensus 269 ~~~n~--------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 269 NCNNG--------------------------------------------------------------------------- 273 (399)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
.+..+....
T Consensus 274 ---------------------------~~~~l~~~~-------------------------------------------- 282 (399)
T KOG0296|consen 274 ---------------------------TVPELKPSQ-------------------------------------------- 282 (399)
T ss_pred ---------------------------CCccccccc--------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 893 (1113)
......|.++.++..-.+.|+|+ ||+|.|||+...+...... |...|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 00233445556666667888888 9999999998876655554 888899999986 4689999999999999999999
Q ss_pred eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999864
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-34 Score=310.05 Aligned_cols=573 Identities=15% Similarity=0.223 Sum_probs=372.6
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
...+|-.++|+|...+ +.++-..|.|.+||+.-+.++. .+.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~-------------------rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLID-------------------RFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHh-------------------hhhccCCccceeeecCCCCeEE
Confidence 4578899999999996 8888999999999999888776 3789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+|++|..|+||++++.+++- ++.||.+.|..+.|.+.-. +++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 8999999999999999888 799999999999999999999999999999999999
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC-CCceEE------EEEccCC--CeEEeccccCceeEEEecCCCC
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
|+|.. ..++|+|.|.+|++||+.-......-++. ...... +--.+|- +.++.||. ..+..++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence 99877 48999999999999999754333221110 000000 0000111 14445554 4788899999999
Q ss_pred EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1113)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1113)
.+++|+.|..|++|.+...+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++....
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend----- 293 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND----- 293 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----
Confidence 999999999999999987665544445566789999999999999999999999999999765 45554432211
Q ss_pred CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1113)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1113)
.|-... ..| .-.+..++.|+-+.+|.++.
T Consensus 294 ------RFW~la------------------------------ahP-~lNLfAAgHDsGm~VFkleR-------------- 322 (1202)
T KOG0292|consen 294 ------RFWILA------------------------------AHP-ELNLFAAGHDSGMIVFKLER-------------- 322 (1202)
T ss_pred ------eEEEEE------------------------------ecC-CcceeeeecCCceEEEEEcc--------------
Confidence 111100 001 12344455566666666552
Q ss_pred ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s 827 (1113)
+.++. +++ ++.|+-.- +..|+-+|+.+..-. .+... -.......+++++.++
T Consensus 323 ---Erpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~d~-------------------~v~~l-r~~g~~~~~~~smsYN 374 (1202)
T KOG0292|consen 323 ---ERPAY--AVN--GNGLFYVK-DRFIRSYDLRTQKDT-------------------AVASL-RRPGTLWQPPRSLSYN 374 (1202)
T ss_pred ---cCceE--EEc--CCEEEEEc-cceEEeeeccccccc-------------------eeEec-cCCCcccCCcceeeec
Confidence 11111 121 22222222 556666655431110 01110 0011134678899999
Q ss_pred cCCCEEEEEe---CCeEEEEECCCCceeeee-c-C-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258 828 KNDSYVMSAS---GGKISLFNMMTFKTMATF-M-P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1113)
Q Consensus 828 ~~~~~l~~~s---dg~i~vwd~~~~~~~~~~-~-~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1113)
|....+..++ .+...++.+.....-..- . . .......+ |-. .+++.+.--.+..+.+=++.+. ..+++..-
T Consensus 375 pae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fva-rNrfavl~k~~~~v~ik~l~N~-vtkkl~~~ 451 (1202)
T KOG0292|consen 375 PAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVA-RNRFAVLDKSNEQVVIKNLKNK-VTKKLLLP 451 (1202)
T ss_pred cccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEE-ecceEEEEecCcceEEecccch-hhhcccCc
Confidence 9887776664 356666655432111000 0 0 01112222 222 2222222222445555554432 22222211
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~ 981 (1113)
..+..+-+.-.|.+|+.. ...|.++|++......+... ..+..+.||+|..+++.-+...|.|.+.+
T Consensus 452 -~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~vkyvvws~dm~~vAll~Kh~i~i~~kk 518 (1202)
T KOG0292|consen 452 -ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKVKYVVWSNDMSRVALLSKHTITIADKK 518 (1202)
T ss_pred -ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------CceeEEEEcCccchhhhcccceEEEEecc
Confidence 234455566666666542 34599999987544322111 36788999999999888777888888854
Q ss_pred ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc--eeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
.+.+.+.. ..-.|.+-+|..+|-+|++...- |+ |-+.+|. .+.++. ..+....+ .|
T Consensus 519 -L~l~~sih---Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikTLd----------~~iyitkv-----~g 576 (1202)
T KOG0292|consen 519 -LELLCSIH---ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKTLD----------KPIYITKV-----KG 576 (1202)
T ss_pred -hhheecch---heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEecc----------cceEEEEe-----eC
Confidence 33333322 15578888999999888876532 11 2222221 222222 12222223 47
Q ss_pred CEEEEEeCCCcEEEEeccCCC
Q 001258 1060 NEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+.+..-..|+.+.+..+...|
T Consensus 577 n~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 577 NKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred CEEEEEecCCCeEEEeechHH
Confidence 788888889999988887665
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.6e-37 Score=307.05 Aligned_cols=349 Identities=19% Similarity=0.299 Sum_probs=286.1
Q ss_pred ccCCCCCCCCCcccCCCCCchhhhcccCCCCC-----ccccccCcccC-CccccCCcccCCCCCCCCCCCCCCcceeEec
Q 001258 282 LKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGI-----SDEINLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL 355 (1113)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1113)
.++.+++.+++.++|.++...+...|...++. .....+.+++| +..|..+ ....++.+..++-
T Consensus 23 g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~d-----------p~~~~~tKf~h~s 91 (464)
T KOG0284|consen 23 GKRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDD-----------PSSAFTTKFVHTS 91 (464)
T ss_pred CccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCC-----------cccccccceEecc
Confidence 46677777799999999998888777766652 22237778888 5555522 1223344444443
Q ss_pred -c-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 356 -N-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 356 -~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
. -+..|..|.|.|+|++ |++|+..|.+.+|+..+ ++| ..++..|...|+++.||++|.
T Consensus 92 ~NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnF-------------EtilQaHDs~Vr~m~ws~~g~ 151 (464)
T KOG0284|consen 92 SNKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNF-------------ETILQAHDSPVRTMKWSHNGT 151 (464)
T ss_pred ccccccceeeEEEcCCCce-eEeecccccEEEecCce------eeH-------------HHHhhhhcccceeEEEccCCC
Confidence 2 4679999999999997 89999999999999632 122 126889999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
++++|+.+|.|++|+..-.... .+.+|. ..|++++|+|++. .|+++|+|++|+|||....+.-..+.||.-.|
T Consensus 152 wmiSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV 225 (464)
T KOG0284|consen 152 WMISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV 225 (464)
T ss_pred EEEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence 9999999999999998754322 344554 8999999999888 79999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.++.|+|.. .+|++||.|..|++||.+++.++.++..|...|..+.|++++. +|+++
T Consensus 226 ksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~ 282 (464)
T KOG0284|consen 226 KSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTG 282 (464)
T ss_pred ceeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEc
Confidence 999999987 5899999999999999999999999999998888888877765 89999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
+.|..++++|+++.+.+..+.+| ...|+++.|+| ...+|.+|+.||.|..|.+... +.+..
T Consensus 283 skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~--------------- 344 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE--------------- 344 (464)
T ss_pred cCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-ccccC---------------
Confidence 99999999999988888888866 55899999999 6789999999999999987522 11110
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
...+|.
T Consensus 345 --------------------------------------------------------------------------i~~AHd 350 (464)
T KOG0284|consen 345 --------------------------------------------------------------------------IPPAHD 350 (464)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 013488
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
..|.+++++|-|..|++++.|.++++|.-.+
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeeccCC
Confidence 8999999999999999999999999997654
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=280.67 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=249.4
Q ss_pred ccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~ 826 (1113)
.+|.+.|+.++..+. ...++.++.|..+.+|++... |...|..+.. +.| |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 556788888999999998743 2334443332 444 9999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc--ccc
Q 001258 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--HSK 903 (1113)
Q Consensus 827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~--h~~ 903 (1113)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++... +..++.. |++
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 8999999999999999998754 4444433 378
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeC
Q 001258 904 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 980 (1113)
Q Consensus 904 ~V~~l~~s~d--~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~ 980 (1113)
-|+++.|+|+ ..+++++|.|++|++||+++.+ ....+.+|. +.++.+++||||...++ +.|+.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 7899999999999999999833 345555665 48899999999999999 59999999999
Q ss_pred CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC
Q 001258 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~ 1060 (1113)
+.++.+..+ +|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+....+....+.+.++.++|++ ||.
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCc
Confidence 999997766 568999999999987666555 466799999999999988876555443445677888999998 899
Q ss_pred EEEEEeCCCcEEEEeccC
Q 001258 1061 EFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1061 ~l~s~~~Dg~v~vW~~~~ 1078 (1113)
.|+.|-.|+.|++|.+..
T Consensus 297 tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEeeecCCcEEEEEeec
Confidence 999999999999998753
No 31
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.8e-34 Score=303.41 Aligned_cols=546 Identities=17% Similarity=0.236 Sum_probs=387.0
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC---eEEEEe
Q 001258 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY 439 (1113)
Q Consensus 363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 439 (1113)
...|.|.+ ++|.| ....|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34456665 35555 46789999987653332 5899999999999999888 899999
Q ss_pred CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCc--eeeEeeccCcCEE--E
Q 001258 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVY--S 514 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~ 514 (1113)
.|+.|++|.++... +....++.+|...+.|+.-. .. +.++ ..|+++.+||.+..+ +...+.--.+.+. |
T Consensus 77 sD~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv~a~--~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 77 SDGRVILWKLRDEY-LIKIYTIQGHCKECVCVVAR--SS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred CCCcEEEEEEeehh-eEEEEeecCcceeEEEEEee--ee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 99999999999433 45566788877666665432 22 3333 789999999985554 2333332223333 3
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCC--CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
+++.+.++.-.++.|+.+..|.++.-.+. .....+.+|...|.+++|...+. +.-+|+++
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~ 212 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASS 212 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEec
Confidence 44444333345666777778888865533 33457889999999999987664 12258899
Q ss_pred ecCCcEEEEECCCCc---------------------eEEEEc--------cCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258 593 GDDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 643 (1113)
+.|..|+||.+.-+. ....+. ..+|...|.++.|+|.+..|.+++.|.++.
T Consensus 213 SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi 292 (764)
T KOG1063|consen 213 SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI 292 (764)
T ss_pred CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence 999999999874322 010111 124567889999999998888999999999
Q ss_pred EEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1113)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1113)
+|...+..-....
T Consensus 293 iW~pd~~tGiWv~------------------------------------------------------------------- 305 (764)
T KOG1063|consen 293 IWKPDENTGIWVD------------------------------------------------------------------- 305 (764)
T ss_pred EEecCCccceEEE-------------------------------------------------------------------
Confidence 9975443101000
Q ss_pred CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCC
Q 001258 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1113)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~ 803 (1113)
.+|+=.+ .+......+..|+|+++.+++-+..|..++|.... ...|...
T Consensus 306 -~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~ 354 (764)
T KOG1063|consen 306 -VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE 354 (764)
T ss_pred -EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec
Confidence 0000000 01334567888999999999999999999997221 1123321
Q ss_pred CccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEE
Q 001258 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1113)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 878 (1113)
- .+ .+|...|+.++|+|.|.+|++.+ |-+-|+|-.-. ...+...+-|...++|++|-+ ....+++|
T Consensus 355 ~------~i--SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 355 P------VI--SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred c------cc--ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 1 12 24999999999999999999998 99999987542 123344566788899999997 56788888
Q ss_pred ecCCcEEEEEcc-------------------------------------------cce----------------------
Q 001258 879 MDDSSIQIYNVR-------------------------------------------VDE---------------------- 893 (1113)
Q Consensus 879 ~~dg~v~iwd~~-------------------------------------------~~~---------------------- 893 (1113)
.+...+|+|+.. +|.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 888999999852 010
Q ss_pred -----------eeeeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258 894 -----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1113)
Q Consensus 894 -----------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1113)
.++++.||...|++++.+|+|+++||++... .|++|+..+... .+...+|.- .|+.
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~ 577 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTR 577 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEE
Confidence 1233568999999999999999999998753 589999988543 334556654 7999
Q ss_pred EEEccCCcEEEE-EcCCeEEEEeCCccceeeccc---cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC--ceee
Q 001258 958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRC 1031 (1113)
Q Consensus 958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~--~~~~ 1031 (1113)
++|||||++|++ +.|+++.+|........ .+. ...|..-|.+..|+||+.+++|++.|++|+||..... +.+.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence 999999999998 79999999997443221 111 4579999999999999999999999999999999888 5554
Q ss_pred ecCCCcccCCCcccCccceEEEEeCCCCC----EEEEEeCCCcEEEEecc
Q 001258 1032 RINPSAYLPAGVSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1032 ~~~~~~~~~~gh~~~v~~i~~~~~p~d~~----~l~s~~~Dg~v~vW~~~ 1077 (1113)
++. ...++..|++ +++.|.+.+ .++.|-..|.|.+|+..
T Consensus 657 ~~a-----~~~~~~aVTA--v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 657 RFA-----CLKFSLAVTA--VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhc-----hhccCCceee--EEeeccccccccceEEEEecccEEEEEecc
Confidence 432 1245677886 555554433 78999999999999966
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-34 Score=299.71 Aligned_cols=470 Identities=18% Similarity=0.205 Sum_probs=346.8
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-.--. ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55589999999999999999999999999999999988777 6666788999999998777 799999999999999
Q ss_pred CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
..+++.++.|..|.+.|.+++.||.. .+++|+|.|-+|++||++.. .+.+++.+|.+.|..++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999999876 69999999999999999865 45668999999999999998765
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCCcc
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
+.+++++-|++|++|.+.+..+..++++| ...|+|+.|-+ |..+|++|++|.++++||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 46999999999999999998888888866 55899999998 4479999999999999999887 7
Q ss_pred ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1113)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 7777765
Q ss_pred CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1113)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 812 (1113)
|...|..+.|+|.-..+++++.||+++||.-.+-.. ... +
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l----------------------E~t-L 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL----------------------EKT-L 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------------------hhh-h
Confidence 556678889999999999999999999997542110 000 0
Q ss_pred CCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE----EEecCCcEEEEE
Q 001258 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN 888 (1113)
Q Consensus 813 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la----~g~~dg~v~iwd 888 (1113)
...-+.+.|++-.+.+..+++|.|....+..+-..++...+... -.+.|+. .+.... +.+.++ +
T Consensus 266 --n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~----gKIiwa~-~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 266 --NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSN----GKIIWAV-HSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred --hcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCC----ccEEEEc-CceeeeeeceeccCcc-----c
Confidence 01456789999999999999999766666666554444333311 1233332 121111 111111 3
Q ss_pred cccceeee----eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 889 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 889 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
+..|+.+. .+-.-.-....++-+|+|++++.|+ ||.-.||..-.. +.. . .+.-....|++|.
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK--~------fG~~~eFvw~~ds 399 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNK--A------FGSGLEFVWAADS 399 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhc--c------cccceeEEEcCCC
Confidence 33343321 1111111234577899998877665 788888863321 111 1 1345778999997
Q ss_pred cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258 965 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus 965 ~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
...++ -+++.|.++ ++++..+.+....+ ...- -|..|+....++.+++||.+++++++++.
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~------~e~i-~gg~Llg~~ss~~~~fydW~~~~lVrrI~--------- 461 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMS------AEGI-FGGPLLGVRSSDFLCFYDWESGELVRRIE--------- 461 (794)
T ss_pred CeEEEEecCCceEEE--ecceeccccccccc------eeee-cCCceEEEEeCCeEEEEEcccceEEEEEe---------
Confidence 77777 678999998 67777766654322 1111 23345555557889999999999999986
Q ss_pred ccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
|.+-.+.|+- +|.+++.++ |.+.++..+.
T Consensus 462 ---v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n 490 (794)
T KOG0276|consen 462 ---VTSKHVYWSD-NGELVAIAG-DDSFYILKFN 490 (794)
T ss_pred ---eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence 3333477775 677777666 4456666554
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-35 Score=274.83 Aligned_cols=230 Identities=20% Similarity=0.303 Sum_probs=190.9
Q ss_pred eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001258 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1113)
Q Consensus 372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 451 (1113)
-+|++++.|.+|++|...+|.+... +....+.|+.+...||+++||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 3899999999999999999999873 44556789999999999999999765 599999999
Q ss_pred CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec
Q 001258 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531 (1113)
Q Consensus 452 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 531 (1113)
+..- +..++.+|...|++|.|-.||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|.. ..|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8754 5668999999999999999999 79999999999999999987777776 77999999988765 57999999
Q ss_pred CCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---
Q 001258 532 DGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--- 607 (1113)
Q Consensus 532 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 607 (1113)
+|.|++||+....+...+. .....+.+++..||| .+++++...|..++|++-+..
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---------------------sml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---------------------SMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC---------------------cEEEEecCCccEEEEEccCCCccc
Confidence 9999999999865554432 233455555555555 478889999999999987643
Q ss_pred ---eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 608 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 608 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++..++.| ...+..+.+|||+++|++++.|.+++||+..+.
T Consensus 204 ~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 204 ELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 34445555 446889999999999999999999999987543
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=292.37 Aligned_cols=273 Identities=17% Similarity=0.278 Sum_probs=237.9
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
..++.+|...|+.+-|+|+-. ++++++.|++|++||..+|+... .++||.+.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 445667999999999999998 79999999999999999998854 5899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
.|++||+++.|-.+++||..+. ..+...+.+|...|.+++|-|.|. ++++++.|.+|++|++.+|.+++++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999873 223336889999999999999998 899999999999999999999999999999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|..+. +..||.++++++.|.+|++|-+.+..+...+..|..+|.+++|.|....--.....+. ...+.++.
T Consensus 237 wvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~ 308 (406)
T KOG0295|consen 237 WVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG 308 (406)
T ss_pred hEEEEE--ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence 999988 5678899999999999999999999999999999999999999887641100000000 01346899
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
+++.|++|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+.+. ++.+.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred eecccceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 99999999999999999999998775 48999999999999999999999999999988 6665554
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=284.33 Aligned_cols=301 Identities=22% Similarity=0.325 Sum_probs=267.8
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|..+|+.+-|.|+-...++++.|++|++||..+++..+ .++||.+.|.+|+|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 477899999999999999999999999999999999999765 8999999999999999999 89999999999999
Q ss_pred eCCC-CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 495 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 495 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
|..+ .++++.+.+|...|.+++|.|.+ .+|++++.|.+|+.|++.++-++.++.+|...|..+..+.||.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt------- 248 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT------- 248 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence 9987 67889999999999999988765 6999999999999999999999999999999988888888886
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
.+++++.|.+|++|-..++++...+..|.+ .|.+++|-|...+ . .| .
T Consensus 249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~-----~i--~-------- 295 (406)
T KOG0295|consen 249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--P-----SI--S-------- 295 (406)
T ss_pred --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--c-----ch--h--------
Confidence 688999999999999999988888887766 6788888775320 0 00 0
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
T Consensus 296 -------------------------------------------------------------------------------- 295 (406)
T KOG0295|consen 296 -------------------------------------------------------------------------------- 295 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
-+++
T Consensus 296 --------------------------------~at~-------------------------------------------- 299 (406)
T KOG0295|consen 296 --------------------------------EATG-------------------------------------------- 299 (406)
T ss_pred --------------------------------hccC--------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
... .+.++.+++ |++|++||+.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++
T Consensus 300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 000 456788888 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
+++..+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999963
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-33 Score=261.47 Aligned_cols=296 Identities=16% Similarity=0.280 Sum_probs=242.2
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccC
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHE 509 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~ 509 (1113)
.-+|+++|.|.+|++|...+|.+.+ ++....+.|+.+...||++ .|++++ ...||+||+.++. ++.++.+|.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~r---Tiqh~dsqVNrLeiTpdk~--~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSR---TIQHPDSQVNRLEITPDKK--DLAAAG-NQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEE---EEecCccceeeEEEcCCcc--hhhhcc-CCeeEEEEccCCCCCceeEEeccC
Confidence 4579999999999999999999887 6776677999999999999 677776 4689999999765 588999999
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
..|.++.|. .+|.++++|+.||+++|||++.......+... .+|+++...|+ ...|
T Consensus 84 kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn---------------------QteL 139 (311)
T KOG0315|consen 84 KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN---------------------QTEL 139 (311)
T ss_pred CceEEEEEe--ecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC---------------------cceE
Confidence 999999976 56699999999999999999986665555433 55665555554 4469
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1113)
++|..+|.|++||+.+..+...+..... ..|.++...|||.+++.+.+.|..++|++-+. .....+
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~l------------ 205 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASEL------------ 205 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCC-Cccccc------------
Confidence 9999999999999998877776654443 47899999999999999999999999987653 111000
Q ss_pred CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1113)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1113)
.|
T Consensus 206 ------~P------------------------------------------------------------------------ 207 (311)
T KOG0315|consen 206 ------EP------------------------------------------------------------------------ 207 (311)
T ss_pred ------eE------------------------------------------------------------------------
Confidence 00
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
+. + ++ .|...+..+.+|||
T Consensus 208 ----~~--------k-----------------------------------------------~~--ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 208 ----VH--------K-----------------------------------------------FQ--AHNGHILRCLLSPD 226 (311)
T ss_pred ----hh--------h-----------------------------------------------ee--cccceEEEEEECCC
Confidence 00 0 00 16777888888899
Q ss_pred CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
+++||+++ |.+++||+.++. +.-..+.+|...+..++||. |++||++|+.|+.+++|++..++.++...+|-....|
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 99998887 889999998887 55567889999999999999 9999999999999999999999999999999988888
Q ss_pred EEEc
Q 001258 908 LAFS 911 (1113)
Q Consensus 908 l~~s 911 (1113)
++..
T Consensus 306 ~~ln 309 (311)
T KOG0315|consen 306 VALN 309 (311)
T ss_pred EEee
Confidence 7763
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-33 Score=286.98 Aligned_cols=255 Identities=19% Similarity=0.306 Sum_probs=226.9
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
.+..|++++|+.+|. +||+|+.||.++||+...+ ++. .+..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 457899999999999 6999999999999997643 333 5888999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+++.|+++.+||..+|+... .+.-|..+-..|.|-.+.. |++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999998665 4666888878899988876 99999999999999999999999999999999999
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC-CCCEEEEEecC
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD 595 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 595 (1113)
|++.. .+|++++.|+++++|..........+..|...|..+.|+|.|. +..+| .+..+++++.|
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD 431 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence 87654 7999999999999999999889999999999999999999986 33444 34568889999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceec
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1113)
++|++||+..+.++..+..| ..+|.+++|+|+|+++++|+.||.|.+|++.++ +.++.
T Consensus 432 stV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s 489 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKS 489 (524)
T ss_pred CeEEEEEccCCceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccch-heeEe
Confidence 99999999999999999766 458999999999999999999999999999887 44443
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.4e-33 Score=273.58 Aligned_cols=332 Identities=16% Similarity=0.198 Sum_probs=263.1
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+.....|+++|.+++.+|+.+ |++||+.|..-.||+..+|+... .+.+|.+.|+++.||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSH 116 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEcc
Confidence 344445999999999999777 79999999999999999998665 4889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
||.+||+|+.+|.|+||+..++.... ++....+.|.-+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999998666 4556677899999999888 899999999999999999888899999999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
++++=.|.| +|+.++++..||+|++|+..++.+...+....+ ....++.++..+..++
T Consensus 192 ~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 192 PCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLT 249 (399)
T ss_pred CcccccccC--CCceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeE
Confidence 999998765 579999999999999999999877766543221 1233444444555688
Q ss_pred EEecCCcEEEEECCCCceEEEEccC------CCCCCcCe---EEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPR---IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~---~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1113)
.|..++.+++-+..+|+.+...... ++...+.| +.++..-.+.|+|+-||+|.|||+.... ++
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R------ 321 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LR------ 321 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch--hh------
Confidence 8888999998888888877766520 01112222 3333344455555666666666543220 00
Q ss_pred ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1113)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1113)
T Consensus 322 -------------------------------------------------------------------------------- 321 (399)
T KOG0296|consen 322 -------------------------------------------------------------------------------- 321 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1113)
Q Consensus 742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v 821 (1113)
. . -.|...|
T Consensus 322 -------------------------------------------------------------------~--~--c~he~~V 330 (399)
T KOG0296|consen 322 -------------------------------------------------------------------H--I--CEHEDGV 330 (399)
T ss_pred -------------------------------------------------------------------e--e--ccCCCce
Confidence 0 0 0167778
Q ss_pred cEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 822 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
..+.|-+ ..+|++++ +|.|+.||.++|++..++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 8888887 56777776 99999999999999999999999999999999 89999999999999999864
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=277.98 Aligned_cols=254 Identities=18% Similarity=0.289 Sum_probs=224.3
Q ss_pred CCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1113)
Q Consensus 345 ~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 423 (1113)
...|-++.+.+. |.+.|.|+++-|-.+ ++++|+.|++|.|||+.+|+... .+.||-..|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~v 196 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETV 196 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhhee
Confidence 344666767766 999999999999988 49999999999999999999876 489999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
..+++|+--.||++++.|+.|+-||+...+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+.
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence 999999999999999999999999999998877 6889999999999999988 89999999999999999999999
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.+.||..+|..+.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++..|...
T Consensus 272 ~l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~----------------- 332 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN----------------- 332 (460)
T ss_pred EecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-----------------
Confidence 999999999999876543 5899999999999999999888888887777777766666543
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.+++++.| .|+-|++..|..+..+.+| ...|++++.+.|+ ++++|++.|.+.+||..++
T Consensus 333 ----~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 333 ----LFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ----hhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 56666654 6899999999999988766 4578899998876 7888999999999999988
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-32 Score=293.50 Aligned_cols=445 Identities=15% Similarity=0.251 Sum_probs=317.4
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
+...+..|..++|+|..-+++++-..|.|++||.+-+.++. .|.+|.++|..++|.|++. +|+|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44456789999999999999999999999999999988777 7889999999999999999 899999999999999
Q ss_pred CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1113)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 575 (1113)
..+.+|+.++.||.+.|..+.|++.. .+|+|+|.|.+|+||++.+.+++..+.+|.+.|.+..|.|...
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED--------- 148 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED--------- 148 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---------
Confidence 99999999999999999999998766 6999999999999999999999999999999888888777544
Q ss_pred ceeEEEecCCCCEEEEEecCCcEEEEECCCCce---------------------------EEEEccCCCCCCcCeEEECC
Q 001258 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~ 628 (1113)
.+++++-|.+|++||+...+. +..+-..+|...|+.++|+|
T Consensus 149 ------------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 149 ------------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred ------------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 699999999999999853221 11111223344566677777
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1113)
Q Consensus 629 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1113)
.-.++++|++|..|++|.....
T Consensus 217 TlpliVSG~DDRqVKlWrmnet---------------------------------------------------------- 238 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET---------------------------------------------------------- 238 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence 6677777777777777754322
Q ss_pred cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1113)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1113)
+.|.+++ + .+|.+.|+++.|+|..+.+++.+.|++|+|||+...+.
T Consensus 239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--- 284 (1202)
T KOG0292|consen 239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--- 284 (1202)
T ss_pred ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccccc---
Confidence 1233321 1 45899999999999999999999999999999874321
Q ss_pred CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEe
Q 001258 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 868 (1113)
Q Consensus 789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s 868 (1113)
+.. +.. ..+.-..++..|..+++++|.|+.+.||.++... ++. +.+
T Consensus 285 -------------------v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~ 330 (1202)
T KOG0292|consen 285 -------------------VQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN 330 (1202)
T ss_pred -------------------eee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence 000 111 4567788999999999999999989998876422 222 333
Q ss_pred cCCCcEEEEEecCCcEEEEEcccce--eeeeeccc---ccCeEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCCccccccc
Q 001258 869 PQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVLVSS-GAD-SQLCVWSSDGWEKQKNRF 941 (1113)
Q Consensus 869 ~~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~L~s~-s~D-~~v~iwd~~~~~~~~~~~ 941 (1113)
++ .|...- |..|+-+|+.+.+ .+..++.- ..++.++.++|....+..+ ..| ++--++.+..........
T Consensus 331 --~n-~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GN-GLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CC-EEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 33 333333 8899999998844 33444433 3678889999865544433 333 333344332211000000
Q ss_pred cccCCC---------------------------------C-CCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceee
Q 001258 942 LQIPTG---------------------------------R-TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987 (1113)
Q Consensus 942 ~~~~~~---------------------------------~-~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~ 987 (1113)
.....+ . .........+-+.-+|.+|+ .+...|.+||+.....+.
T Consensus 407 ~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~ 485 (1202)
T KOG0292|consen 407 KDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVG 485 (1202)
T ss_pred hhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEE-EcCCeEEEEEeecceEEE
Confidence 000000 0 00000122333333443333 345678899999888888
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
.+. -..|.-+.||+|..+++.-+ -.+|.|.+.
T Consensus 486 si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k 517 (1202)
T KOG0292|consen 486 SIK----VSKVKYVVWSNDMSRVALLS-KHTITIADK 517 (1202)
T ss_pred EEe----cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence 776 56899999999998877665 456777664
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=259.32 Aligned_cols=246 Identities=19% Similarity=0.334 Sum_probs=197.8
Q ss_pred EeccCCCCcEEEEEcCC-CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spd-g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
.+-+|+++|+.++|+|- |. +||+++.|..|+||+...+..... ...+-.+|+..|+.++|+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 34459999999999999 77 799999999999999885332221 11234689999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---ceeeEeecc
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 508 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h 508 (1113)
|++||+|+.|.++.||.-..++ +....++.||...|.|++|+++|. +||+++.|++|-||.+..+ .++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877654 556778999999999999999999 8999999999999998754 567789999
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
...|..+.|+|+. .+|++++.|.+|++|+-... .+..++..+...|.+++|.+ .
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~---------------------~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN---------------------I 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC---------------------C
Confidence 9999999999987 49999999999999976631 23445555555555555554 4
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|+++...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 457999999999999986522 11 1223467788888 5589999999999999654
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.9e-33 Score=267.76 Aligned_cols=257 Identities=18% Similarity=0.228 Sum_probs=219.7
Q ss_pred CCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258 347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 347 ~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
+........+|+++|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|.+.|..+
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l 96 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMEL 96 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEee
Confidence 4445566778999999999999999 59999999999999976432211 1578999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
.|.+|++.|++++.|.+|+.||.++|++.+ .+++|.+-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++.
T Consensus 97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred eeccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc
Confidence 999999999999999999999999999877 68899999999997777776 78999999999999999999988885
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 586 (1113)
..-.+++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.
T Consensus 173 -~kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-------------------- 229 (338)
T KOG0265|consen 173 -NKYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-------------------- 229 (338)
T ss_pred -cceeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC--------------------
Confidence 456788888764 446899999999999999999999999999999999988888887
Q ss_pred CEEEEEecCCcEEEEECCC----CceEEEEccCCCCCC--cCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 587 NRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++++-+.|.++++||++. .+++..+.++.+.-+ ...++|+|+++.+.+|+.|..+++||....
T Consensus 230 -~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 230 -FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred -ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 688999999999999875 345777776655433 347899999999999999999999997654
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-33 Score=266.26 Aligned_cols=296 Identities=19% Similarity=0.293 Sum_probs=241.2
Q ss_pred ccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258 412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1113)
Q Consensus 412 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 491 (1113)
....+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.... ....++++|++.|..+.|.+|+. .++++|.|++|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence 334688999999999999999999999999999999976532 24447889999999999999999 79999999999
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecC-CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
+.||+++|++++.+++|..-|++++ |.. +-.++.+++.||++++||+++.+...++.. ...++++.|..++
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s----- 186 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTS----- 186 (338)
T ss_pred EEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccc-----
Confidence 9999999999999999999999998 333 335778899999999999998766655432 2345555555544
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
..+++|+-|+.|++||++.+.....+.+| ...|+.+..+++|.++.+-+.|.++++||++.-
T Consensus 187 ----------------~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 187 ----------------DQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ----------------cceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 46999999999999999999999999877 558999999999999999999999999997532
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
.... ..+.++
T Consensus 249 ~p~~---------------------------------------------------------------------R~v~if- 258 (338)
T KOG0265|consen 249 APSQ---------------------------------------------------------------------RCVKIF- 258 (338)
T ss_pred CCCC---------------------------------------------------------------------ceEEEe-
Confidence 0000 000000
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
.+. .
T Consensus 259 -------------------------------------~g~-~-------------------------------------- 262 (338)
T KOG0265|consen 259 -------------------------------------QGH-I-------------------------------------- 262 (338)
T ss_pred -------------------------------------ecc-h--------------------------------------
Confidence 000 0
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.+.......++|+|+++.+.+|+ |..+.+||......+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus 263 ----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 ----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ----hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 00122345678999999999998 99999999999999999999999999999999 888999999999998743
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-29 Score=269.06 Aligned_cols=499 Identities=14% Similarity=0.155 Sum_probs=359.5
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-CCcceEEEEEcCCCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 435 (1113)
-..+|.|||||.+.+. ||.+-.+|.|.||++..+=.. ..++.+ ....|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 4578999999999995 999999999999999864222 123444 45789999999 56678
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee--EeeccCcCEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY 513 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~ 513 (1113)
.+.+.+|.|.-||+.+++.+. .+....+.|++++.+|.+. .++.|++||.+...+...++..+ .|....+.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999987665 6777888999999999998 68999999988888877776654 4455678999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--------CCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
++.|+++ +..+++|+.||.|++||...+........ ....|.++.+-.++
T Consensus 159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-------------------- 216 (691)
T KOG2048|consen 159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-------------------- 216 (691)
T ss_pred EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------------------
Confidence 9998754 46799999999999999998776652111 11234444444444
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1113)
.+++|...|+|.+||...+.+++.+..+. ..|.+++..+++.++++++.|+.|..+...++...
T Consensus 217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------ 280 (691)
T KOG2048|consen 217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------ 280 (691)
T ss_pred --cEEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence 39999999999999999999999988774 47999999999999999999999988876655210
Q ss_pred ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1113)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1113)
|-.. .
T Consensus 281 ---------------------------------------------------------------wv~~------------~ 285 (691)
T KOG2048|consen 281 ---------------------------------------------------------------WVIN------------S 285 (691)
T ss_pred ---------------------------------------------------------------eeee------------c
Confidence 1000 0
Q ss_pred CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE-E
Q 001258 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-F 824 (1113)
Q Consensus 746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~-l 824 (1113)
....|...|.+++..++ .+++++.|..+.+-....... .+ ... . ....-.+ +
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~-~-------~~~p~~~~v 338 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQ-K-------NLFPASDRV 338 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhc-c-------cccccccee
Confidence 01237788889988887 689999998888754321000 00 000 0 0001111 2
Q ss_pred EEecCCCEEEEEeCCeEEEEECCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 825 ALSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 825 ~~s~~~~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
...+..+.++.-.+..+.+|.+.+... .+-.......|.|.+.|| +|+++|.+. -..++||.+.....+
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNV 416 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcce
Confidence 333444444444477888888765411 122233455699999999 999999886 347888888752222
Q ss_pred e--e---ecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 896 S--K---LKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 896 ~--~---l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
. . .....-.+..+.|+-|++.++.++ .+..+.+.++++............ .....|..++.||||.|+|+
T Consensus 417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence 1 1 122334577889999999988888 677888888877543221111111 22357999999999999999
Q ss_pred -EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCCc
Q 001258 970 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus 970 -~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
+.++.|.+|++++++...... .-...|+.++|+| +...|+.+..|+.|.-||++..+
T Consensus 493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 699999999999988755542 1257899999995 55678888899999999995544
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-33 Score=280.15 Aligned_cols=293 Identities=18% Similarity=0.281 Sum_probs=241.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
++..|++.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++ ++++|+.|..+++|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987776777889999999999999999999 79999999999999
Q ss_pred eCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+.+..||++... ... +.+.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~--------------------W~gvr 353 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGN--------------------WEGVR 353 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhc--------------------ccccc
Confidence 999999988774 4568899999875 45789999999999999987432 111 22222
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
...+..+++.+||.++++.+.|..|++++..+......+..+ ..|++++.|.|++++++.-.+..+++||+... ..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l 429 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL 429 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence 234555555666668999999999999999887666555443 36899999999999999999999999999865 55
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
++.+.||..
T Consensus 430 v~kY~Ghkq----------------------------------------------------------------------- 438 (519)
T KOG0293|consen 430 VRKYFGHKQ----------------------------------------------------------------------- 438 (519)
T ss_pred HHHhhcccc-----------------------------------------------------------------------
Confidence 555555432
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
+.+++-.
T Consensus 439 -----------------------------~~fiIrS-------------------------------------------- 445 (519)
T KOG0293|consen 439 -----------------------------GHFIIRS-------------------------------------------- 445 (519)
T ss_pred -----------------------------cceEEEe--------------------------------------------
Confidence 1111111
Q ss_pred CCCCCCCccEEEEe-cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 814 DSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s-~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
||. .+.+++++|+ |++|+||+..+++.+.++.+|...|+||+|+|.+..++|+|++||+|+||....
T Consensus 446 -----------CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 446 -----------CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 111 2557899999 899999999999999999999999999999999999999999999999997653
No 46
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-33 Score=305.82 Aligned_cols=274 Identities=15% Similarity=0.224 Sum_probs=236.4
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....+.|+.|++|+..++.+..|..|++|.+...+..+ ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence 45678999999999999999999999999875321100 00 01111
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1113)
..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 1111222 33366777777777788999999999999999 89999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceee
Q 001258 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1113)
Q Consensus 909 ~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~ 987 (1113)
.|+|-|-++||+|.|++-++|..+. ..++.+..+|.. .|.|+.|+|++.|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999888 345777888875 8999999999999999 589999999999999999
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
.|. ||.++|++++|||+|++|++|+.||.|.+||+.+++++..+. +|.+.|.+ +.|+. ||..||+|+.
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~ti~S--lsFS~-dg~vLasgg~ 639 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGTIYS--LSFSR-DGNVLASGGA 639 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCceeE--EEEec-CCCEEEecCC
Confidence 997 899999999999999999999999999999999999999988 99999996 77777 8999999999
Q ss_pred CCcEEEEeccCCC
Q 001258 1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus 1068 Dg~v~vW~~~~~~ 1080 (1113)
|++|++||+....
T Consensus 640 DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 640 DNSVRLWDLTKVI 652 (707)
T ss_pred CCeEEEEEchhhc
Confidence 9999999987655
No 47
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-30 Score=266.54 Aligned_cols=432 Identities=18% Similarity=0.244 Sum_probs=316.9
Q ss_pred eeEecc-CCCCcEEEEEcCC--CCeEEEEE-ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258 351 VTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 351 ~~~~~~-h~~~V~~~~~spd--g~~ll~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
..+.++ -...|+|++||+- |.+|++.- +.+..+.|||+..+..... ...-+..|...
T Consensus 146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a 206 (626)
T KOG2106|consen 146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLA 206 (626)
T ss_pred eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEE
Confidence 345555 5678999999974 45433332 3356788999998776542 23345678999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
+|.|.+.-|+.....+.+..|+++++...+....+.++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+..
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEe
Confidence 999966655555557889999999998877666666554 4799999999998 899999999999998877777776
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee--eeCCCCceEEEEEcc-------------------C
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSA-------------------D 564 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-------------------~ 564 (1113)
..|.+.|.+++.. .+| .|++|+.|..|..|| ..-+.+.. ++...+.+..++-.. .
T Consensus 284 ~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 284 HAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred eecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7999999999964 444 577799999999998 33333322 222233444333211 1
Q ss_pred CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEE
Q 001258 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1113)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 644 (1113)
-+.+..+|.+ ..+.++.+|+.+++++++.|+.+++|+ ..+++...... .++.|+.|+|.| .++.|+..|...+
T Consensus 360 f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 360 FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEE
Confidence 1133344444 777889999999999999999999999 44444443322 357899999999 9999999999999
Q ss_pred EEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCC
Q 001258 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1113)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1113)
.|.++. ..+...
T Consensus 433 ~d~e~~-~lv~~~------------------------------------------------------------------- 444 (626)
T KOG2106|consen 433 LDTETQ-DLVTIH------------------------------------------------------------------- 444 (626)
T ss_pred Eecccc-eeEEEE-------------------------------------------------------------------
Confidence 988764 222111
Q ss_pred ceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCC
Q 001258 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1113)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~ 804 (1113)
....+++.+.|+|+|.+++.++.|+.|++|.++...
T Consensus 445 ------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-------------------- 480 (626)
T KOG2106|consen 445 ------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-------------------- 480 (626)
T ss_pred ------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC--------------------
Confidence 024678999999999999999999999999886432
Q ss_pred ccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeee--------------e----cCCCCCeeEE
Q 001258 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPAATFL 865 (1113)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l 865 (1113)
+.....-.. +...|+.+.||+|++++.+-+ |-.|..|.....+.... | -.+...|..+
T Consensus 481 -~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~ 557 (626)
T KOG2106|consen 481 -RKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV 557 (626)
T ss_pred -cEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence 221111111 447899999999999999998 88899995433322211 1 1234456777
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcccce---eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 866 ~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
+-+. +.+++|+|.+.|.|++|...-.+ ...++.+|++.|++++|.-+...|++.+.|..|..|++
T Consensus 558 ~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 558 ARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7777 78899999999999999876433 34667899999999999988889998889999999986
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=267.79 Aligned_cols=294 Identities=16% Similarity=0.316 Sum_probs=244.8
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
++.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 688999999999999999999999999999999999998655 7899999999999999888 89999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------- 290 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------- 290 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence 999999999999999999999998876 5899999999999999999999999999999888887765332
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
.+++|+.|++|++||+..|+....+..|. ..|.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred -------------ceEEecCCceEEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 49999999999999999999999988774 479999999999999998886 6888988776 222
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+.
T Consensus 354 ~nls---------------------------------------------------------------------------- 357 (460)
T KOG0285|consen 354 QNLS---------------------------------------------------------------------------- 357 (460)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
+|..-|.+++...|+- +++|+++|.+..||+..+..-..+.... .-|.
T Consensus 358 --------------gh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 358 --------------GHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred --------------cccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 2555667777777764 7788888999999987542211111000 0011
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 848 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~ 848 (1113)
...+..|.+.+|...|..|++|. |.+|++|.-+.
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 11456799999999999999998 99999998653
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.7e-29 Score=266.99 Aligned_cols=503 Identities=13% Similarity=0.167 Sum_probs=345.7
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
..+|.+||||.+.+.||.+-.||.|.||++..+=.... .+.++. ..|.+++|++.++ |.+.+.+|+|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 34899999999999999999999999999998644433 455554 4899999997776 89999999999999999
Q ss_pred CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee--eeCCCCceEEEEEccCCCeEEeccccCc
Q 001258 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1113)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 576 (1113)
++.+..+....+.|++++.++.. ..++.|+.||.+..++......... +......+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL------------------- 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL------------------- 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEE-------------------
Confidence 99999999999999999988765 6899999999777777665433322 222223444
Q ss_pred eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEc-----cCC-CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++.|+|++..+++|+.||.|++||...+..+.... ... ...-|.++.|-.+ ..|++|.+-|+|.+||...+
T Consensus 159 --slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 159 --SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred --EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence 45555555579999999999999999988776322 111 1223455555544 46888888889999987766
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
.+++.+.
T Consensus 236 -TLiqS~~------------------------------------------------------------------------ 242 (691)
T KOG2048|consen 236 -TLIQSHS------------------------------------------------------------------------ 242 (691)
T ss_pred -chhhhhh------------------------------------------------------------------------
Confidence 3332221
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
.|...|.+++.++++.++++++.|+.+..|........ |-..
T Consensus 243 ------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~------- 284 (691)
T KOG2048|consen 243 ------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVIN------- 284 (691)
T ss_pred ------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeee-------
Confidence 16678999999999999999999998887765432110 2111
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE-EEEecCCCcEEEEEecCCcEEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.....|...|.+++..++ .+++|+ |.++.+-.....+...........-.+ +...| .++|..--.+..+.+|.
T Consensus 285 -~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwr 359 (691)
T KOG2048|consen 285 -SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWR 359 (691)
T ss_pred -ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEecccccccee
Confidence 111238889999999887 777777 888777655432211111100011111 22222 34555555566788887
Q ss_pred cccce---------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258 889 VRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1113)
Q Consensus 889 ~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 959 (1113)
+.+.- +++....-...|.+.+.||||++++.+.- ..++||.++.....+........... .....+.
T Consensus 360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ 435 (691)
T KOG2048|consen 360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAIS 435 (691)
T ss_pred ccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeE
Confidence 76541 12222223456899999999999997764 34788888764432222221111111 2457788
Q ss_pred EccCCcEEEE-E-cCCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 960 FHQDQIHFLV-V-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 960 ~spdg~~l~~-~-~d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
|+-|+..++. + ....+.++++.+... +..+...+-...|..+..|+||.||++.+.+|.|.+|++++++...-..
T Consensus 436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~- 514 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV- 514 (691)
T ss_pred EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-
Confidence 8988887776 4 677888888876543 2223322335689999999999999999999999999999987765432
Q ss_pred CcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1036 SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1036 ~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
.....|+ +.+|+|.+-+.|+.+..|+.++-+|++...
T Consensus 515 ------rln~~vT--a~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 ------RLNIDVT--AAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred ------ccCccee--eeeccccccCcEEEEecCCeEEEEecchhh
Confidence 2223445 477777677789999999999999994433
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=253.31 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=239.9
Q ss_pred ccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~ 826 (1113)
.+|.+++..++++|. |..|++++.|..|++|+..... ..........+|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------------------s~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------------------SWTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------------------cEEEEEeccccchheeeeeee
Confidence 348889999999999 8999999999999999875210 011111122259999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeeeeecc
Q 001258 827 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 900 (1113)
Q Consensus 827 s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~ 900 (1113)
+|.|++|++++ |.++.||.-. ..+++.++++|...|.|++|++ +|++||+++.|..|-||.+.. .++...+.+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999875 4578899999999999999999 999999999999999999975 467889999
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1113)
Q Consensus 901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d 979 (1113)
|...|..+.|+|...+|+|+|.|.+|++|+-.. .....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 233667778888874 7999999999999888 5889999998
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
..+. ...-|...++.+.|. ...|++++.|+.|++|.-...-.-..+.........|...|.+ +.|.|.-+
T Consensus 224 ~~~~------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w~p~~~ 293 (312)
T KOG0645|consen 224 LYTD------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--VQWNPKVS 293 (312)
T ss_pred eccC------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--EEEcCCCC
Confidence 6521 123578899999998 5689999999999999876532222222222233467777775 89999657
Q ss_pred CEEEEEeCCCcEEEEecc
Q 001258 1060 NEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~~~ 1077 (1113)
++|++|+.||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999875
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=274.51 Aligned_cols=283 Identities=17% Similarity=0.260 Sum_probs=241.0
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....|..+.|.|+|+.|++++..|...+|+...-.| +..-..|...|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------EtilQaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------ETILQAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------------HHHhhhhcccceeEEEccC
Confidence 456889999999999999999999999997531111 1111239999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
|.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999864 3444555554 8899999999 5667889999999999999988888899999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcccee
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~ 986 (1113)
++|+|...+|||+|.|..|++||.+++.+ +....+|.. .|..+.|+|++.+|++ +.|..+++||+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~c-----l~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGSC-----LATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcch-----hhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 99999999999999999999999999654 556666664 8999999999999999 69999999999988877
Q ss_pred eccccCCCCCCeeEEEECCC-CCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 987 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
..+. +|...|++++|+|- ..++.+|+.||.|..|.+...+.+.. .+.+|...|++ ++|+| =|.+|++|
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~iws--l~~hP-lGhil~tg 368 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE------IPPAHDGEIWS--LAYHP-LGHILATG 368 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccC------CCcccccceee--eeccc-cceeEeec
Confidence 7766 89999999999995 45788999999999999985555533 44589999996 99999 68999999
Q ss_pred eCCCcEEEEeccC
Q 001258 1066 LSDGGVHVFEPLE 1078 (1113)
Q Consensus 1066 ~~Dg~v~vW~~~~ 1078 (1113)
+.|.++++|.-..
T Consensus 369 snd~t~rfw~r~r 381 (464)
T KOG0284|consen 369 SNDRTVRFWTRNR 381 (464)
T ss_pred CCCcceeeeccCC
Confidence 9999999997543
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=246.35 Aligned_cols=253 Identities=19% Similarity=0.262 Sum_probs=218.5
Q ss_pred CCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258 346 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1113)
Q Consensus 346 ~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 424 (1113)
.+|.+..+++. |.+.|.++.|+-||+| .++++.|.+|++|+...|.+++ ...+|..+|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceee
Confidence 34555556666 9999999999999997 7777789999999999999887 4789999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC--Ccee
Q 001258 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQ 502 (1113)
Q Consensus 425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~--~~~~ 502 (1113)
.++.+.|...+++|+.|+.|.+||+.+|+.++ .+++|.+.|+.++|+.+.. ++++|+.|.++++||.++ .+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999999887 7999999999999999998 899999999999999885 5678
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 582 (1113)
+.+....+.|.++.+.. ..|++|+.||+++.||++.+.....+ -+.+|++++|++|+
T Consensus 139 Qildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~----------------- 195 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDG----------------- 195 (307)
T ss_pred chhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCC-----------------
Confidence 88888889999988542 57999999999999999975543322 23445555555554
Q ss_pred cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+..++++.|+++++.|-.+|+++..+++|.....=..++++.....+++|+.||.+.+||+.+.
T Consensus 196 ----nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 196 ----NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ----CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 5789999999999999999999999998877655567888888999999999999999999877
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-31 Score=300.24 Aligned_cols=288 Identities=26% Similarity=0.421 Sum_probs=246.3
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
+...|.++.|+++|+.+++++.++.+++|+...... .....+. +|...|.+++|+|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~--~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELS--GHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhcccc--ccccceeeeEECCC
Confidence 467899999999999999999999999998742110 0111122 39999999999999
Q ss_pred CCEEEEEe-CCeEEEEEC-CCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 830 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
++++++++ |++|++||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56689999999999999999999 6799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCcccee
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 986 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~ 986 (1113)
++|++|+++|++++.|+.|+|||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 334444444433 68999999999999995 7779999999999999
Q ss_pred eccccCCCCC---CeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEE
Q 001258 987 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus 987 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l 1062 (1113)
..+. +|.. .+.+..+++.++++++|+.|+.|++|++.++..+.++. +| ...+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 9887 4433 56667778999999999999999999999999998887 88 55555 478888 57889
Q ss_pred EEEe--CCCcEEEEecc
Q 001258 1063 ALGL--SDGGVHVFEPL 1077 (1113)
Q Consensus 1063 ~s~~--~Dg~v~vW~~~ 1077 (1113)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 8888 79999999754
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=268.61 Aligned_cols=232 Identities=20% Similarity=0.359 Sum_probs=204.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
..+.|.|+++..+ .+++|..|++|.|||..+-+++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999998543 38999999999999998877765 68999999999999 577999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce---eeEeeccCcCEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 513 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 513 (1113)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. +++++|.|.++.+||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 78899999999999843 799999999999999987653 357789999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
.+.|. . +++++++.|.+|++|++.+.+.+.++.+|...|.++.+. ++++++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 99863 2 599999999999999999999999999998888776652 23689999
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.|.+|++||+..|.++..+++|.. -|.|+.|. .+.+++|..||+|++||+.++
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheeec--CceeeeccccceEEEEecccc
Confidence 999999999999999999988754 69999995 678999999999999999876
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=278.76 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=248.6
Q ss_pred cccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 492 (1113)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++ ++.+|..+|.+++|+++|. .|.|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 6889999999999999 999999999999999999987 66666 8999999999999999999 699999999999
Q ss_pred EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
+||+++|+++..+. -...+.++.|+|++ -+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999887 45677889988876 37899999999999999999998889998989899888888887
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
++++.++|++++||+......+....... .....++..+|++.++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 69999999999999998877665543322 23578999999999999999999999997543311
Q ss_pred c--eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 653 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
. .+.+++|
T Consensus 420 ~nkkK~feGh---------------------------------------------------------------------- 429 (503)
T KOG0282|consen 420 LNKKKRFEGH---------------------------------------------------------------------- 429 (503)
T ss_pred cCHhhhhcce----------------------------------------------------------------------
Confidence 0 0011110
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
T Consensus 430 -------------------------------------------------------------------------------- 429 (503)
T KOG0282|consen 430 -------------------------------------------------------------------------------- 429 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.-.+.-..+.|||||.+|++|+ ||.+.+||.++.+.+..+.+|...++.+.|+|.....+|+++.||.|++||
T Consensus 430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 0122334688999999999998 999999999999999999999999999999998788999999999999996
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-31 Score=298.40 Aligned_cols=256 Identities=21% Similarity=0.375 Sum_probs=212.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc--eeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
|...|.|+.|||+|++ +++++.++.+++|+..+++ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4789999999999996 9999999999999997665 222 35899999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1113)
Q Consensus 435 las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1113)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7899999999999999997 899999999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
+++|+ +++.+|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 99965 5568999999999999999998773 2333332222 0 2344455555558999
Q ss_pred EecCCcEEEEECCCCceEEEEccCCCC-CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258 592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
++.|+.+++||+..+.....+..+... ..+.+...++.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 999999999999999999988877543 23445556789999999999999999999886 44444444
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=240.47 Aligned_cols=285 Identities=17% Similarity=0.274 Sum_probs=232.2
Q ss_pred ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.++..|.++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|..++.+.|+. .|++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3688999999999999999999999999999999999999887 8999999999999999998 6999999999999
Q ss_pred EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC--CeeeeeCCCCceEEEEEccCCCeEEec
Q 001258 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
||+.+|+.++.|.+|.+.|+.+.|+. +...+++|+.|..+++||.++.. +++.+......|.++..+.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-------- 155 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-------- 155 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--------
Confidence 99999999999999999999999764 44799999999999999998643 3444554455555555433
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
..+++|+.||+++.||++.|+....+-++ +|+|++|++|++...+++.|+++++.|-.+|
T Consensus 156 ---------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 156 ---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred ---------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 34899999999999999999877655433 7999999999999999999999999999999
Q ss_pred cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1113)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1113)
+++....+|...-
T Consensus 216 klL~sYkGhkn~e------------------------------------------------------------------- 228 (307)
T KOG0316|consen 216 KLLKSYKGHKNME------------------------------------------------------------------- 228 (307)
T ss_pred HHHHHhcccccce-------------------------------------------------------------------
Confidence 7888777765421
Q ss_pred cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1113)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 811 (1113)
.-...+++.....++.+++||.+++||+..... +..
T Consensus 229 ---------------------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~----------------------~sk- 264 (307)
T KOG0316|consen 229 ---------------------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ----------------------ISK- 264 (307)
T ss_pred ---------------------eeeeeeecccceeEEeccCCceEEEEEecccee----------------------eee-
Confidence 112345566666788889999999988763221 111
Q ss_pred cCCCCCCCC-ccEEEEecCCCEEEEEeCCeEEEEEC
Q 001258 812 VTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNM 846 (1113)
Q Consensus 812 ~~~~~~~~~-v~~l~~s~~~~~l~~~sdg~i~vwd~ 846 (1113)
+.. +... +.++.+.|.-..++++.++.+..|.-
T Consensus 265 ~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 265 LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred ecc--CCceeEEeeecccCccceeEecCCceeceee
Confidence 110 3333 68899999988888888877777754
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.98 E-value=6.8e-29 Score=260.71 Aligned_cols=640 Identities=15% Similarity=0.181 Sum_probs=353.1
Q ss_pred cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
+.+..+-.|.+.|+.+.|||-...|||+++.|..|+||.+..|-... +......+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence 34445555999999999999887799999999999999998553221 11122245555678999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEeec
Q 001258 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEG 507 (1113)
Q Consensus 429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~ 507 (1113)
+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.+..|+.||+ ++++++.|+.|+|||.+ .++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9976666666678999999999988655 7899999999999999999 89999999999999988 4778888888
Q ss_pred cCcCEE-EEeeeecCCceEEEEEecC----CcEEEEEcCCCCCe-eeeeCC-CCceEEEEEccCCCeE-EeccccCceeE
Q 001258 508 HEAPVY-SVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSR-VDYEAP-GRWCTTMAYSADGTRT-YQGFRKRSLGV 579 (1113)
Q Consensus 508 h~~~v~-~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~~-~~~~~~~~i~~ 579 (1113)
|.+.-. .+.|. ++-..|++.+.+ ..|++||.+..... .++... ...|.--.+.||.+.+ +.|.....+.+
T Consensus 212 H~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~ 289 (1012)
T KOG1445|consen 212 HGGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFM 289 (1012)
T ss_pred cccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEE
Confidence 876422 23333 333467776664 46999998764332 222221 1123344566666543 33444445555
Q ss_pred EEecCCCCEEEEEe---------------------cCCc-EEEEECCCCceEEEE---------ccC-------------
Q 001258 580 VQFDTTKNRFLAAG---------------------DDFS-IKFWDMDSVQLLTSI---------DAD------------- 615 (1113)
Q Consensus 580 ~~~~~~~~~l~~~~---------------------~dg~-i~iwd~~~~~~~~~~---------~~~------------- 615 (1113)
+.+.+...+|.-+. .++. .+++.+.....+... ..|
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 55444333221100 0111 111111111110000 000
Q ss_pred --------CCCCCcCeEEECCCCC-------------EEE-EEECC---------------CcEE--EEEcCC-----Cc
Q 001258 616 --------GGLPASPRIRFNKDGC-------------LLA-VSTND---------------NGIK--ILATSD-----GI 651 (1113)
Q Consensus 616 --------~~~~~v~~~~~s~~~~-------------~l~-~~~~d---------------g~i~--iwd~~~-----~~ 651 (1113)
+....+..++..|..+ ..+ +++.+ +.+. +=|... ..
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 0001111222222100 000 00000 0000 000000 00
Q ss_pred cceecc---------------------ccccccccccCCCCCCCcccchhhh-----hhhhcccccccccccccccCCCC
Q 001258 652 RLLRTF---------------------ENLAYDASRTSENSKPTISPISAAA-----AAAATSAGLADRAASMVSIPGMN 705 (1113)
Q Consensus 652 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 705 (1113)
...+.+ ++.+..+............+.+.-. ....+.+... +..|...-..+.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~g 528 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNFG 528 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCcccC
Confidence 000000 0000000000000000000000000 0000000000 000100000010
Q ss_pred CCccccCCCcceeeccC------CCceeeEeccCCCCC------CcceecccCcccccCceEEEEEeCCCceEEE--eec
Q 001258 706 GDVRSLADVKPRITEES------NDKSKVWKLTELSEP------NQCRSLRLPENLRATKISRLIFTNSGNAILA--LAS 771 (1113)
Q Consensus 706 ~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~ 771 (1113)
.. .........+.+. =|.+.-|.--.+... ..++.+... -+-.+--|+.+..++++ .+.
T Consensus 529 ~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~-----~PgEsnGfcan~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 529 KP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR-----LPGESNGFCANNKRVAVPLAGS 601 (1012)
T ss_pred CC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc-----CCCccCceeeccceEEEEecCC
Confidence 00 0000000000000 011111111111100 001111100 01112223344444544 455
Q ss_pred CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEEEEe-CCeEEEEECCCC
Q 001258 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTF 849 (1113)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~ 849 (1113)
.|.|-||++.....-+++.. .+.-....|+.+.|+| |...||++. ||.|++|.+..+
T Consensus 602 gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred CceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 78999999987655555432 1222566789999998 566888887 899999998754
Q ss_pred c-------eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001258 850 K-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922 (1113)
Q Consensus 850 ~-------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~ 922 (1113)
. .-..+..|...|+++.|+|-...+|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+++.+.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 3 235577899999999999977889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccceee--ccccCCCC
Q 001258 923 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLECVK--QWVPRESS 995 (1113)
Q Consensus 923 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~~~--~~~~~~h~ 995 (1113)
||+|++|+-.+++.. +.++..+....-..+.|.-||+++++ |. +++|.+||..+..... +...+. .
T Consensus 741 Dg~~rVy~Prs~e~p------v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-a 813 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQP------VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-A 813 (1012)
T ss_pred CceEEEeCCCCCCCc------cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-c
Confidence 999999998886532 22222222234467889999999988 43 4679999987654211 111110 1
Q ss_pred CCeeEEEECCCCC-EEEEEeCCCcEEEEecCCCce-eeecCCCcccCCCccc
Q 001258 996 APITHATFSCDSQ-LVYACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSS 1045 (1113)
Q Consensus 996 ~~v~~l~~s~dg~-~l~s~~~Dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~ 1045 (1113)
..+.--.+.+|.. ++++|-.|..|.+|.+..... ++.+. +...+.+|++
T Consensus 814 ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~-~f~sp~~hqG 864 (1012)
T KOG1445|consen 814 PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA-PFMSPVGHQG 864 (1012)
T ss_pred CccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc-cccCCCcccc
Confidence 1222233455655 467888899999999854433 33332 3334556766
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.7e-31 Score=260.90 Aligned_cols=273 Identities=21% Similarity=0.326 Sum_probs=228.9
Q ss_pred ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC
Q 001258 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 543 (1113)
Q Consensus 464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 543 (1113)
....|+|+.+. |+ .+++|..|.+|+|||..+-.+++.+.||++.|.|+.+. . ..+++|+.|.+|++||+.++
T Consensus 196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--E--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--c--eEEEecCCCceEEEEeccCC
Confidence 34579999985 33 49999999999999999999999999999999999853 2 69999999999999999999
Q ss_pred CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE---EEEccCCCCCC
Q 001258 544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA 620 (1113)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 620 (1113)
+++.++..|...|..+.|+.. ++++++.|.++.+||+.+...+ ..+.+| ...
T Consensus 268 e~l~tlihHceaVLhlrf~ng-----------------------~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa 322 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNG-----------------------YMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA 322 (499)
T ss_pred chhhHHhhhcceeEEEEEeCC-----------------------EEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence 999999999988888888642 6999999999999999876532 233333 557
Q ss_pred cCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccc
Q 001258 621 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 700 (1113)
Q Consensus 621 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1113)
|+.+.|+ .+++++++.|.+|++|++.++ +.++.+.+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g----------------------------------------- 358 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG----------------------------------------- 358 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence 8888886 569999999999999998887 45444433
Q ss_pred cCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258 701 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1113)
Q Consensus 701 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~ 780 (1113)
T Consensus 359 -------------------------------------------------------------------------------- 358 (499)
T KOG0281|consen 359 -------------------------------------------------------------------------------- 358 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC
Q 001258 781 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP 859 (1113)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~ 859 (1113)
|...|.|+.+ .|+++++|+ |.+|++||+..|.+++.+++|.
T Consensus 359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 4444444444 778999998 9999999999999999999999
Q ss_pred CCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
.-|.|+.|. .+.+++|..||+|+|||+..+. ++..+..|+++|..+.| |...+++++.|.+|.|||
T Consensus 401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999995 4789999999999999998753 45566779999999999 678999999999999999
Q ss_pred CCCCcc
Q 001258 931 SDGWEK 936 (1113)
Q Consensus 931 ~~~~~~ 936 (1113)
+..+..
T Consensus 476 Fl~~~~ 481 (499)
T KOG0281|consen 476 FLNGPP 481 (499)
T ss_pred cCCCCc
Confidence 988543
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.8e-31 Score=270.43 Aligned_cols=285 Identities=19% Similarity=0.267 Sum_probs=241.3
Q ss_pred ccccCceEEEEEeC-CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258 748 NLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~ 826 (1113)
.+|...|+++.|.| .+.++++++.|+.|+||++ |+ .+.+++. +.+ |..+|.+++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrt-f~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRT-FKG--HRKPVRDASF 266 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehh-hhc--chhhhhhhhc
Confidence 45999999999999 8899999999999999985 33 3444443 333 9999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1113)
Q Consensus 827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1113)
+.+|..+++++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++....|-+.|
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999999 9999999999999999987 445689999999666999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccc
Q 001258 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~ 984 (1113)
..+.|-++|+++++.+.|++++||+....-..+ .+..... ....++..+|++.++++ +.|..+.+|.+...-
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhh-----ccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999999999999998743322 1111122 24578999999999999 799999999864322
Q ss_pred e---eeccccCCC--CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 985 C---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 985 ~---~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
. -..+. +| .+.-..+.|||||++|++|+.||.+.+||..+.+++..+. +|...+. .+.|+|...
T Consensus 419 r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci--~v~wHP~e~ 487 (503)
T KOG0282|consen 419 RLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCI--GVDWHPVEP 487 (503)
T ss_pred ccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cCCcceE--EEEecCCCc
Confidence 1 12232 55 5677889999999999999999999999999999999888 7766555 499999888
Q ss_pred CEEEEEeCCCcEEEEe
Q 001258 1060 NEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~ 1075 (1113)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 8999999999999996
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=252.17 Aligned_cols=291 Identities=19% Similarity=0.298 Sum_probs=237.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....+.+..|+|||+++++++-||.|.||+..++....+-+..+. .. .+. +...|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fMM-------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FMM-------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-eee-------cccceEEEeeccc
Confidence 456788999999999999999999999999876554333222111 11 111 6789999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
..++|+|+ ||.|+||.+.+|.|++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+++|+++..++||++.|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-CCcEEEEE-cCCeEEEEeCCccce
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQLAIFETTKLEC 985 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~~-~d~~v~v~d~~~~~~ 985 (1113)
..|++||..+++++.||+|++|+..+.++... ..... ...+|..+..-| +-..++++ ...++.+.++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T-----fk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLST-----FKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhh-----ccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 99999999999999999999999999776432 11111 113566666655 34455554 66788888875 777
Q ss_pred eeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258 986 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 986 ~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
++.+..+. ..+...+.+.||.|.++++.+.|+.++.|.+.+|++...+.+++..+.| ++.+| ..++|++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG---------l~HHP-HqNllAs 496 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG---------LTHHP-HQNLLAS 496 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc---------cccCc-ccchhhh
Confidence 77776432 2566778899999999999999999999999999999988855554433 77788 5689999
Q ss_pred EeCCCcEEEEe
Q 001258 1065 GLSDGGVHVFE 1075 (1113)
Q Consensus 1065 ~~~Dg~v~vW~ 1075 (1113)
-+.||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.8e-28 Score=268.21 Aligned_cols=245 Identities=27% Similarity=0.432 Sum_probs=210.3
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
+|.++|++++|+|++++ +++|+.||.|.+|++.+++... .+.+|...+..+.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 59999999999999995 8899999999999999876543 356788899999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++.+..+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876554 5778999999999999977 78888889999999999999999999999999999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
+|++. +.++++++.||.|++||+++.+....+..+...+.++.++++++ .+++++.+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~~~~ 198 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE---------------------KLLSSSSD 198 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC---------------------EEEEecCC
Confidence 98765 46888888899999999987776666666665666666666554 68888889
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.|++||+..++.+..+..+ ...+.++.|+|++.++++++.+|.|++|++.++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 99999999998888877554 347899999999999998888999999998765
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.6e-28 Score=266.92 Aligned_cols=285 Identities=27% Similarity=0.430 Sum_probs=239.7
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ ++++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 467899999999999999999999999999999999877444 5778999999999999997 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|+.+++.+..+..|...+.++.|++. +.++++++.||.|++||+.+.+....+..+...+.++.++|++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 148 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-------- 148 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--------
Confidence 99998889999999999999998765 46888888899999999987666666665666666666666544
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
++++++.++.|++||+.+++.+..+..+ ...+.++.|+|+++.+++++.++.+++||+.++ ...
T Consensus 149 -------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~ 212 (289)
T cd00200 149 -------------FVASSSQDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCL 212 (289)
T ss_pred -------------EEEEEcCCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCC-cee
Confidence 5666777999999999988888888755 347899999999999999999999999997654 111
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+.
T Consensus 213 ~~~~---------------------------------------------------------------------------- 216 (289)
T cd00200 213 GTLR---------------------------------------------------------------------------- 216 (289)
T ss_pred cchh----------------------------------------------------------------------------
Confidence 1000
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
T Consensus 217 -------------------------------------------------------------------------------- 216 (289)
T cd00200 217 -------------------------------------------------------------------------------- 216 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.|...+.++++++++.++++++ +|.|++|++.+++....+..|...+.+++|++ ++.+|++++.||.|++|+
T Consensus 217 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 -GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred -hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 0445677788888888888888 89999999998888888888989999999999 889999999999999996
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.5e-28 Score=301.04 Aligned_cols=311 Identities=14% Similarity=0.221 Sum_probs=223.2
Q ss_pred CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC----cee
Q 001258 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 455 (1113)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 455 (1113)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+||++.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765443210 01124569999999999999999999999999999997642 111
Q ss_pred e-eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCc
Q 001258 456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1113)
Q Consensus 456 ~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 534 (1113)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3468999999986433 7999999999999999999999999999999999998753 3467888888888
Q ss_pred EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1113)
|++||+.+. ..+..+..
T Consensus 600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQG---------------------------------------------------------------VSIGTIKT 616 (793)
T ss_pred EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence 888877542 12222221
Q ss_pred CCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258 615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1113)
Q Consensus 615 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1113)
+ ..+.++.|+ +++.+|++|+.||.|++||+.+.......+
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------ 657 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------ 657 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence 1 236678884 579999999999999999986542111111
Q ss_pred ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1113)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 773 (1113)
.+|...|.++.|. ++..+++++.
T Consensus 658 ------------------------------------------------------~~h~~~V~~v~f~-~~~~lvs~s~-- 680 (793)
T PLN00181 658 ------------------------------------------------------IGHSKTVSYVRFV-DSSTLVSSST-- 680 (793)
T ss_pred ------------------------------------------------------cCCCCCEEEEEEe-CCCEEEEEEC--
Confidence 0133344444443 3334444444
Q ss_pred eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCC-----
Q 001258 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT----- 848 (1113)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~----- 848 (1113)
|++|++||+..
T Consensus 681 ----------------------------------------------------------------D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 681 ----------------------------------------------------------------DNTLKLWDLSMSISGI 696 (793)
T ss_pred ----------------------------------------------------------------CCEEEEEeCCCCcccc
Confidence 45555555432
Q ss_pred -CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-------------ecccccCeEEEEEcCCC
Q 001258 849 -FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 849 -~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d~ 914 (1113)
...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+.. ...|...|.+++|++++
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 245667888999999999999 789999999999999999765433211 23456679999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 001258 915 NVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 915 ~~L~s~s~D~~v~iwd~ 931 (1113)
..|++|+.||+|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999996
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.3e-30 Score=238.72 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=235.6
Q ss_pred cccCCCcceEEEEEcC---CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258 415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 491 (1113)
+..||+.+|..++||| +|-+|++++.|+.--+-+-++|..+. +|.||.+.|+......+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4679999999999997 89999999999998888888888777 8999999999999998887 68999999999
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe-eeeeCCCCceEEEEEccCCCeEEe
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
+|||.-+|..+++|. |..-|.+++|+. |.++|++|+.++.+++||+...+.. ..+.+|.+.|..+.|....+
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~---- 156 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK---- 156 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc----
Confidence 999999999999998 889999999764 5579999999999999999876543 46777777777776655444
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.+++.+.|++||+||.+++..++.+.... .|+++.++++|++|.++.. +.|.+||..+-
T Consensus 157 -----------------~iLSSadd~tVRLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf 215 (334)
T KOG0278|consen 157 -----------------CILSSADDKTVRLWDHRTGTEVQSLEFNS---PVTSLEVSQDGRILTIAYG-SSVKFWDAKSF 215 (334)
T ss_pred -----------------eEEeeccCCceEEEEeccCcEEEEEecCC---CCcceeeccCCCEEEEecC-ceeEEeccccc
Confidence 58888999999999999999999998654 4899999999998877654 68999987554
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
..++.+ +
T Consensus 216 -~~lKs~------------------------------------------------------------------------k 222 (334)
T KOG0278|consen 216 -GLLKSY------------------------------------------------------------------------K 222 (334)
T ss_pred -cceeec------------------------------------------------------------------------c
Confidence 121111 0
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
T Consensus 223 -------------------------------------------------------------------------------- 222 (334)
T KOG0278|consen 223 -------------------------------------------------------------------------------- 222 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
....|.+..++|+...+++|+ |..++.||..++..+..+ .+|.++|.|+.|+| ||...|+|++||+|+||.
T Consensus 223 ------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 223 ------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ------CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEE
Confidence 122344455556665666665 677777888888777775 88999999999999 999999999999999999
Q ss_pred ccccee
Q 001258 889 VRVDEV 894 (1113)
Q Consensus 889 ~~~~~~ 894 (1113)
...++.
T Consensus 296 t~~~~~ 301 (334)
T KOG0278|consen 296 TTPGKT 301 (334)
T ss_pred ecCCCc
Confidence 876653
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.6e-28 Score=299.72 Aligned_cols=252 Identities=14% Similarity=0.181 Sum_probs=201.0
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCC
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 433 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 433 (1113)
..|.+.|++++|+|+|++ +|+|+.|+.|+|||..+...... ........+. +...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCCC
Confidence 458999999999999995 99999999999999864211000 0000000122 345899999987 588
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++.++..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999887665 6789999999999997 666 7999999999999999999999888755 678
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
.++.|++ +++.++++|+.||.|++||+++.. ....+..|...|..+.|. ++ .++++
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~---------------------~~lvs 677 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS---------------------STLVS 677 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC---------------------CEEEE
Confidence 8888853 456899999999999999998755 344556666666666664 22 36999
Q ss_pred EecCCcEEEEECCCC------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 592 AGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++.|+.|++||+..+ ..+..+..| ...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999743 466677655 446889999999999999999999999997654
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.5e-30 Score=237.96 Aligned_cols=299 Identities=16% Similarity=0.264 Sum_probs=254.8
Q ss_pred ccccCceEEEEEe---CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258 748 NLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1113)
Q Consensus 748 ~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l 824 (1113)
.+|..+|-.++|+ |+|-+|++++.|+.-.+ .+-.+|..+.. +. +|.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence 5699999999997 58999999999976443 24445555443 33 399999999
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeecccc
Q 001258 825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 902 (1113)
Q Consensus 825 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~ 902 (1113)
+++.|...-++++ |=+-+|||.-++..+..|. |..-|.+++|+. |.++|++|+.+..++|||++.- .....+.+|.
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999988888888 8899999999999999997 888899999999 8999999999999999999863 4567889999
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCc
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~ 982 (1113)
+.|..+-|....+.++|.+.|++||+||..++......... ..|.++-+++||++|.++..+.|.+||..+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence 99999999988889999999999999999997754332221 368999999999999999999999999999
Q ss_pred cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
...++.+.. ...|.+..++|+...+++|+.|..++.||+.+++.+..+ ..||-+.|. ++.|+| ||...
T Consensus 215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~------nkgh~gpVh--cVrFSP-dGE~y 282 (334)
T KOG0278|consen 215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY------NKGHFGPVH--CVRFSP-DGELY 282 (334)
T ss_pred ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeec------ccCCCCceE--EEEECC-CCcee
Confidence 999888765 568999999999999999999999999999999998764 128889988 599999 89999
Q ss_pred EEEeCCCcEEEEeccCCC--ccccCCCCCCCCCC
Q 001258 1063 ALGLSDGGVHVFEPLESE--GKWGVPPPVDNGST 1094 (1113)
Q Consensus 1063 ~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~~ 1094 (1113)
++|+.||+|++|....++ +.|.-..|-+.+.-
T Consensus 283 AsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred eccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 999999999999988877 56666666655543
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-28 Score=231.36 Aligned_cols=297 Identities=15% Similarity=0.252 Sum_probs=233.5
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.++||+.+++.+.++.+|.+|.+|+.|.++.||--.+|+.+. ++.||.+.|+|++.+.+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 588999999999999999999999999999999998999777 8999999999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-----CCcEEEEEcCCCC-------CeeeeeCCCCceEEEEEc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYS 562 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s 562 (1113)
|+++|+++..++ ...+|..+.|++.. ++++.... .+.|.++|++... +...+..+..
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-------- 148 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-------- 148 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--------
Confidence 999999999998 56789999987654 45554433 4679999988433 2223332322
Q ss_pred cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
.+...-|.|.+.++++|.++|.|.+||+++|+. +.....|. ..|+.+.+++|..++++++.|.+
T Consensus 149 -------------kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 149 -------------KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred -------------ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceEEecccCcc
Confidence 455566677777899999999999999999854 44445554 47999999999999999999999
Q ss_pred EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1113)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1113)
-++||..+- +.++.+.
T Consensus 214 akl~D~~tl-~v~Kty~--------------------------------------------------------------- 229 (327)
T KOG0643|consen 214 AKLVDVRTL-EVLKTYT--------------------------------------------------------------- 229 (327)
T ss_pred ceeeeccce-eeEEEee---------------------------------------------------------------
Confidence 999998776 3433331
Q ss_pred CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
...+|.+.+++|-...++.++.....-
T Consensus 230 ----------------------------te~PvN~aaisP~~d~VilgGGqeA~d------------------------- 256 (327)
T KOG0643|consen 230 ----------------------------TERPVNTAAISPLLDHVILGGGQEAMD------------------------- 256 (327)
T ss_pred ----------------------------ecccccceecccccceEEecCCceeee-------------------------
Confidence 335677888888777666655431110
Q ss_pred CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 877 (1113)
|+ +.+ .| .-++|++-..+.+..+++|-++|++++|+| +|+..++
T Consensus 257 -------------------VT------------TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsS 304 (327)
T KOG0643|consen 257 -------------------VT------------TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSS 304 (327)
T ss_pred -------------------ee------------eecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCccccc
Confidence 00 000 12 245666666677888999999999999999 9999999
Q ss_pred EecCCcEEEEEccc
Q 001258 878 GMDDSSIQIYNVRV 891 (1113)
Q Consensus 878 g~~dg~v~iwd~~~ 891 (1113)
|++||.|++.....
T Consensus 305 GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCceEEEEEecc
Confidence 99999999986654
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-27 Score=218.07 Aligned_cols=275 Identities=17% Similarity=0.248 Sum_probs=210.7
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
...++.....|.+++|+|.|. |.|+|+...+.+|..+..-..+.. ..+.....+......-+.|.+.|+|.+|||
T Consensus 25 ~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred EEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecC
Confidence 345566788999999999999 699999999999987654222210 000000111122234567999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCC---CCeeEEEEec-CCCcEEEEeCCCCceeeE
Q 001258 431 DGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s-~d~~i~iwd~~~~~~~~~ 504 (1113)
+|++||+|++|++|++.-.. +........++.-|.+.|..++|..+ +.. +|++++ .|..|.+=|..+|+..+.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999996554 33334444568899999999999754 222 566655 588899999999999999
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
+.||.+.|.++- +-++.++++|+.|.+|++||++-..++.++... +--.|.....+..++++|
T Consensus 179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVDP 241 (350)
T ss_pred ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEECC
Confidence 999999998873 345579999999999999999876555443221 111122334667778888
Q ss_pred CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.|+.|++|-.|....+||++.++.++.+..| ...|.|+.|+|...++.+++.|..|++-|+...
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 8889999999999999999999999999766 568999999999999999999999999987644
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5e-28 Score=229.12 Aligned_cols=287 Identities=18% Similarity=0.314 Sum_probs=229.7
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 539 (1113)
.+.||..+++.|.++.+|. +|.+++.|.++.||-..+|+.+.++.||.+.|+++.... +...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGD--LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~--~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD--LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW--DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCc--EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC--CcceeeeccccceeEEEE
Confidence 3779999999999999999 899999999999999889999999999999999999654 447999999999999999
Q ss_pred cCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-----ecCCcEEEEECC-------CCc
Q 001258 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-----GDDFSIKFWDMD-------SVQ 607 (1113)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~-------~~~ 607 (1113)
+++++.+..+.. ...|..+.|+.+|. +++.. +..+.|.++|++ +.+
T Consensus 81 v~tGk~la~~k~-~~~Vk~~~F~~~gn---------------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 81 VETGKQLATWKT-NSPVKRVDFSFGGN---------------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred cCCCcEEEEeec-CCeeEEEeeccCCc---------------------EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 999888776654 34566667766665 33333 245678999987 445
Q ss_pred eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhc
Q 001258 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687 (1113)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1113)
+...+..+. ..++.+-|+|-+++|++|..||.|.+||+.++.+.+...+
T Consensus 139 p~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~----------------------------- 187 (327)
T KOG0643|consen 139 PYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE----------------------------- 187 (327)
T ss_pred ceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-----------------------------
Confidence 566666554 4688999999999999999999999999988743221110
Q ss_pred ccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEE
Q 001258 688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 767 (1113)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 767 (1113)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEEC
Q 001258 768 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 846 (1113)
Q Consensus 768 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~ 846 (1113)
.|...|..+.+++|..++++++ |.+-++||.
T Consensus 188 ------------------------------------------------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 188 ------------------------------------------------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred ------------------------------------------------hhccccccccccCCcceEEecccCccceeeec
Confidence 1666788888899999999998 889999999
Q ss_pred CCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCC-------------cEEEEEcccceeeeeecccccCeEEEEEcC
Q 001258 847 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS-------------SIQIYNVRVDEVKSKLKGHSKRITGLAFSH 912 (1113)
Q Consensus 847 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg-------------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 912 (1113)
.+.++++++. ...++++.+++| -...++.| +.+- .-+.|++-..+.+..+++|-++|++++|+|
T Consensus 220 ~tl~v~Kty~-te~PvN~aaisP-~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 220 RTLEVLKTYT-TERPVNTAAISP-LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred cceeeEEEee-ecccccceeccc-ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 9999999987 456799999999 44444444 3331 123344434456678899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 001258 913 ALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 913 d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+|+..+||+.||.|++.-++.
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCcccccCCCCceEEEEEecc
Confidence 999999999999999987765
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=227.82 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=197.5
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE-eeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-LRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
..-.|++++.+.+|||||. |+|+|+.|..|+|.|++..-... ...+..-+.+. ..|.. .++-.|.++|+++.|+|.
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa-~hPvI-RTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQA-RHPVI-RTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCccc-CCceE-eehhhccCcccceeecch
Confidence 3344999999999999999 79999999999999997211000 00000000000 11111 257789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---ecc
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 508 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h 508 (1113)
...|++|+.|++|+++|.......+.++.+. ...+|.++.|.|.|. +++.|..--++++||+.+-+|...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999998655444333333 456899999999999 7899999999999999998876543 469
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 588 (1113)
.+.|+++.++ +.+.+.++++.||.|++||--+..++.++.. .|.+..+....|..++++
T Consensus 261 t~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-------------------AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 261 TGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGN-------------------AHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred ccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHh-------------------hcCCceeeeEEEccCCeE
Confidence 9999999854 5668999999999999999877666654422 112224444445555558
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCC---CcCeEEECCCCCEEEEEEC-CCcEEEEEcCCC
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDG 650 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~ 650 (1113)
+++.+.|..+++|.+.+++++..+.+.+..+ .-+...|+....+++.-.. .+.+.-||..+.
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9999999999999999999999987654322 1234556666666655433 356777877665
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=247.20 Aligned_cols=263 Identities=18% Similarity=0.279 Sum_probs=219.5
Q ss_pred CCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc
Q 001258 343 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421 (1113)
Q Consensus 343 ~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 421 (1113)
..+.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.-. ...+.|..+
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g 220 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLG 220 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCC
Confidence 45556777777777 9999999999999774 9999999999999998765211 115788889
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
.|+.++|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+..+.|
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C 295 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYC 295 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhe
Confidence 99999999999999999999999999999987665 8999999999999998877 499999999999999999999
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.+++. ....+..|+.. ...+++|-.|+.|++||+++..+....+.++ .|+++..+++|.
T Consensus 296 ~kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--------------- 354 (459)
T KOG0288|consen 296 SKTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--------------- 354 (459)
T ss_pred ecccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe---------------
Confidence 88765 23445555533 2578999999999999999988888777665 677777777776
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceec
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1113)
.+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++...
T Consensus 355 ------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~ 424 (459)
T KOG0288|consen 355 ------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKV 424 (459)
T ss_pred ------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence 588889999999999999998888865432 235788999999999999999999999999988 44433
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-27 Score=236.52 Aligned_cols=291 Identities=15% Similarity=0.264 Sum_probs=230.9
Q ss_pred CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
+.+-...+-|.+.|.++... ++ .+++|++||+++|||.. |+... .+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence 45555677899999999998 56 49999999999999986 55544 4789999999888
Q ss_pred EcCCC---CeEEEEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----
Q 001258 428 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 498 (1113)
Q Consensus 428 ~spdg---~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----- 498 (1113)
|--.. ..|++++.|.++++|.++.++.. .......||...|-+|...++|. .+++||.|.+|+||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 85433 35999999999999999877543 12223459999999999999999 799999999999999321
Q ss_pred --------------------CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEE
Q 001258 499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1113)
Q Consensus 499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 558 (1113)
+.++-++.||..+|.++.|.. . ..+++++.|.+|+.||+.+++....+...
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~~------ 300 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTTN------ 300 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeecC------
Confidence 235567889999999999875 2 58999999999999999987766554322
Q ss_pred EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---eEEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 634 (1113)
Q Consensus 559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 634 (1113)
..+.++.++|..++|++|+.|..+++||.+++. ..+.+.+| ...|.++.|+| +...|+
T Consensus 301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 244556666666689999999999999998764 33445444 56899999999 556789
Q ss_pred EEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCC
Q 001258 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 714 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1113)
+++.|+++++||+++....+..+.+|.+.+... ...++
T Consensus 363 S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v------------------------------------------dW~~~ 400 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV------------------------------------------DWNEG 400 (423)
T ss_pred EEecCCeEEEEEeccCCCcceeeccCCceEEEE------------------------------------------eccCC
Confidence 999999999999999876888888886654321 23456
Q ss_pred cceeeccCCCceeeEecc
Q 001258 715 KPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 715 ~~l~~~~~d~~i~iw~~~ 732 (1113)
..+++|+.|.+++++...
T Consensus 401 ~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEeccCcceEEEeccc
Confidence 789999999999998754
No 74
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=4.1e-26 Score=239.94 Aligned_cols=510 Identities=17% Similarity=0.202 Sum_probs=332.8
Q ss_pred eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
.+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+.. ..+.. ..+..|+.+-.+.++
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~~-q~LSa--------------pe~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGHS-QKLSA--------------PEIDVGGGNVIVECL 134 (1012)
T ss_pred ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCcc-cccCC--------------cceeecCCceEEEEe
Confidence 4556788999999999998776 5899999999999998873221 11111 123334444467778
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1113)
.|+|...-++..+..|.+++||+.+++.+..+..| ...|.+..|+.||.+|++++.|..|+|||.....+.++..++|
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 88887777888888999999999999999888876 4579999999999999999999999999998877778877777
Q ss_pred cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC----CceeeEeccCCCC
Q 001258 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE 736 (1113)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~iw~~~~~~~ 736 (1113)
....... .........+++.+.+ ..+++||......
T Consensus 213 ~~~rdsR----------------------------------------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 213 GGMRDSR----------------------------------------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccchhhe----------------------------------------eeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 6542110 0001112244444443 4678888876554
Q ss_pred CCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEcccc--------------------------------
Q 001258 737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRT-------------------------------- 783 (1113)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~-------------------------------- 783 (1113)
+.....+. ....|.---|.||.++++.++. +..+..+++...
T Consensus 253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~ 327 (1012)
T KOG1445|consen 253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG 327 (1012)
T ss_pred cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence 44433332 2334445567788776655544 466666665432
Q ss_pred --------------------------------------------------------------------------------
Q 001258 784 -------------------------------------------------------------------------------- 783 (1113)
Q Consensus 784 -------------------------------------------------------------------------------- 783 (1113)
T Consensus 328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~ 407 (1012)
T KOG1445|consen 328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK 407 (1012)
T ss_pred hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence
Q ss_pred -----cc------------------C----CC-------------------------C------ceeeee----------
Q 001258 784 -----ER------------------N----SS-------------------------G------KATASV---------- 795 (1113)
Q Consensus 784 -----~~------------------~----~~-------------------------~------~~~~~~---------- 795 (1113)
.+ . ++ + ....+.
T Consensus 408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~ 487 (1012)
T KOG1445|consen 408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS 487 (1012)
T ss_pred cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence 00 0 00 0 000000
Q ss_pred ----------cCeec---------CCCCccccc----c--------------------------------ccCC-CCCCC
Q 001258 796 ----------APQLW---------QPPSGIMMT----N--------------------------------DVTD-SNPEE 819 (1113)
Q Consensus 796 ----------~~~lw---------~~~~g~~~~----~--------------------------------~~~~-~~~~~ 819 (1113)
...+- .+..|+-+. . ...+ .+|..
T Consensus 488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks 567 (1012)
T KOG1445|consen 488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS 567 (1012)
T ss_pred CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence 00000 000000000 0 0000 00110
Q ss_pred -------------CccEEEEecCCCEEEE---EeCCeEEEEECCCCc-eeee-ec--CCCCCeeEEEEecCCCcEEEEEe
Q 001258 820 -------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFK-TMAT-FM--PPPPAATFLAFHPQDNNIIAIGM 879 (1113)
Q Consensus 820 -------------~v~~l~~s~~~~~l~~---~sdg~i~vwd~~~~~-~~~~-~~--~~~~~i~~l~~s~~d~~~la~g~ 879 (1113)
+-.+=-|..+.+++|+ |+.|.|.||++.... ..-. +. .....|+.+.|.|-|...||+++
T Consensus 568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ 647 (1012)
T KOG1445|consen 568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT 647 (1012)
T ss_pred hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence 0111124445566664 347899999997432 2111 11 13456999999999999999999
Q ss_pred cCCcEEEEEcccc-------eeeeeecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001258 880 DDSSIQIYNVRVD-------EVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1113)
Q Consensus 880 ~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1113)
+||.|++|.+..+ ..-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+. ...+.+|..
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd- 721 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD- 721 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence 9999999999753 344678899999999999984 46899999999999999998543 445567764
Q ss_pred CCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC----cEEEEecCC
Q 001258 952 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1026 (1113)
Q Consensus 952 ~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----~v~vwd~~~ 1026 (1113)
.|..++|||||+.+|+ +.|+++++|+.+.++..-.-..+.-...-..+.|.-||+++++.+.|. .|.+||..+
T Consensus 722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 8999999999999999 899999999998876533222112244556788888999998888774 488898876
Q ss_pred Cce--eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccCCCCC
Q 001258 1027 LKL--RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1089 (1113)
Q Consensus 1027 ~~~--~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~ 1089 (1113)
... +... +......++.-.|.++.+-++++|-.|..|+++++.-.+..+-..++|
T Consensus 800 l~~~pl~t~--------~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 800 LDLRPLYTQ--------VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred ccCCcceee--------eecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 442 2111 111111222234555445568899999999999988766554444444
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.2e-27 Score=221.64 Aligned_cols=276 Identities=16% Similarity=0.241 Sum_probs=230.2
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 537 (1113)
.+++|...|.+|+|+.+|. .+++|+.|+++.+|+++.++.... ..+|.+.|..++|++... ..+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 799999999999999998866553 468999999999988655 68999999999999
Q ss_pred EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1113)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1113)
||++..++..........+ .+.|+|+|+++++++.|..|.+.|.++.+.+...+..
T Consensus 92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-- 147 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-- 147 (313)
T ss_pred EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence 9999887776655443322 3556666678999999999999999988877766543
Q ss_pred CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccccc
Q 001258 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1113)
Q Consensus 618 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1113)
..+.-++|+.++.+++.....|.|.|.....- +.+..+
T Consensus 148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si---------------------------------------- 185 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI---------------------------------------- 185 (313)
T ss_pred -ceeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence 35778899988888877777788887754322 111000
Q ss_pred ccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEE
Q 001258 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1113)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 777 (1113)
T Consensus 186 -------------------------------------------------------------------------------- 185 (313)
T KOG1407|consen 186 -------------------------------------------------------------------------------- 185 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec
Q 001258 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 856 (1113)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 856 (1113)
. .|.....|+.|+|+|+++|+|+ |..+.+||++..-|.+.+.
T Consensus 186 -----------------------------------~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 186 -----------------------------------K--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred -----------------------------------c--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 0 1667778899999999999998 8999999999999999999
Q ss_pred CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1113)
Q Consensus 857 ~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D 923 (1113)
.+.-+|..+.||. ||++||+|++|..|-|-++++|..+..+. +.++-..++|+|...+||.++.|
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999 99999999999999999999999888886 78889999999999999988876
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=240.24 Aligned_cols=271 Identities=18% Similarity=0.255 Sum_probs=217.3
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeec-cCCCCcccccccccCCCcceEEEEEc
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
....-.|.-+|+||+++||+++ .++++.+|+|.=|++.+|+.... ..+.-+ +.....+.+..- .+|...|.+++.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence 3444459999999999999997 89999999999999999986521 000000 111122222222 4899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-||.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 999999999999999999999988776 6899999999999987766 58999999999999999999999999999
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
+.|.++...... ..+-.|+.|+++++|++. .+....+.++...+.+++|-.+.. +
T Consensus 287 d~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H----------------------f 341 (479)
T KOG0299|consen 287 DGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH----------------------F 341 (479)
T ss_pred cceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc----------------------e
Confidence 999998754332 455555699999999994 355566777777788888776665 9
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCC----------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
++|+.+|.|.+|++...+++.+.....+ ...|++++..|...++++|+.+|.|++|.+.++.+.+
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 9999999999999999888876642211 1268899999999999999999999999998884433
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6e-27 Score=232.95 Aligned_cols=302 Identities=17% Similarity=0.268 Sum_probs=222.7
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEe
Q 001258 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd 495 (1113)
..|.+.|.++... +++|++|+.||.++|||..... .. .+.||.++|.+++|.-.+. .-.|+++|.|.++++|-
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4588999999987 8999999999999999987643 33 6889999999888853332 12599999999999999
Q ss_pred CCCCce----eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE-EEccC-C---C
Q 001258 496 ATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSAD-G---T 566 (1113)
Q Consensus 496 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~-~---~ 566 (1113)
++.++. +....||...|.++... ++|..+++|+-|.+|++|+..+ ...-.++.....-... ...+. + .
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccCc
Confidence 887653 34456999999999854 5668999999999999999322 1111110000000000 00000 0 0
Q ss_pred -eEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 567 -RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 567 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
..+.||+ ..+..+.|++ ...+++++.|.+|+.||+.++..+..+... ...+|+.++|..++|++|+.|..|++|
T Consensus 253 ~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 253 LVTLEGHT-EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred eEEecccc-cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeec
Confidence 1122222 2455555555 345999999999999999999999888654 357999999999999999999999999
Q ss_pred EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 725 (1113)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 725 (1113)
|.+++...
T Consensus 328 DPR~~~gs------------------------------------------------------------------------ 335 (423)
T KOG0313|consen 328 DPRTGDGS------------------------------------------------------------------------ 335 (423)
T ss_pred CCCCCCCc------------------------------------------------------------------------
Confidence 98765100
Q ss_pred eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258 726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805 (1113)
Q Consensus 726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g 805 (1113)
+....
T Consensus 336 ----------------------------~v~~s----------------------------------------------- 340 (423)
T KOG0313|consen 336 ----------------------------VVSQS----------------------------------------------- 340 (423)
T ss_pred ----------------------------eeEEe-----------------------------------------------
Confidence 00000
Q ss_pred cccccccCCCCCCCCccEEEEecCCCE-EEEEe-CCeEEEEECCCCc-eeeeecCCCCCeeEEEEecCCCcEEEEEecCC
Q 001258 806 IMMTNDVTDSNPEEAVPCFALSKNDSY-VMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1113)
Q Consensus 806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg 882 (1113)
+. +|.+.|.++.++|...+ |++++ |+++++||+++.+ .+..+.+|...|.++.|. ++.++++|+.|.
T Consensus 341 ------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 341 ------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN 410 (423)
T ss_pred ------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence 11 28888999999987765 55666 9999999999877 889999999999999998 577999999999
Q ss_pred cEEEEEc
Q 001258 883 SIQIYNV 889 (1113)
Q Consensus 883 ~v~iwd~ 889 (1113)
+|+|+.-
T Consensus 411 ~l~i~~~ 417 (423)
T KOG0313|consen 411 KLRIFKG 417 (423)
T ss_pred eEEEecc
Confidence 9999864
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7e-27 Score=240.64 Aligned_cols=247 Identities=20% Similarity=0.242 Sum_probs=201.6
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
...+.|.+++|||...+=+|+.+ .-.|.||+..+..... .+..-...|++++|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence 35689999999997776455543 4689999988766554 244456689999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
|+|+..|.|+|+|+++...++ .+.+|..+|..+.|+|++.. ++++|++|+.+++||+.+...+..+.+|++.|.|.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977755455 68899999999999999887 89999999999999999999877999999999999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
+|++-. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|. .+++ ...
T Consensus 160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~ias-AgG 216 (487)
T KOG0310|consen 160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIAS-AGG 216 (487)
T ss_pred ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEE-cCC
Confidence 998754 47999999999999999998754444445777888888887776 3444 446
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.|++||+.+|........ .|...|+|+++..++..|++++-|+.+++||+.+-
T Consensus 217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 7999999986654433332 14568999999999999999999999999996543
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=218.91 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=170.2
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~ 492 (1113)
.+..-.+.|+++.|+++|.+|++++.|.+++|||..++++++ ++..++-.|..++|...... ++.++. |.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence 344567799999999999999999999999999999999877 67777889999999988874 555554 89999
Q ss_pred EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
.-++.+.+.++.|.||...|.+++.+|.. ..+++++.|++|++||++..++...+.....
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------------------ 143 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------------------ 143 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCC------------------
Confidence 99999999999999999999999988766 6899999999999999997666554443332
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCC--ceEEEEccC-CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
.+.+|+|+|-.++++...+.|++||++.- .+...+... ....+.+.+.|+|||++|+.++..+.+.+.|.-+
T Consensus 144 -----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 144 -----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred -----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 24566677777888888889999999863 344555433 3345678999999999999999999999999877
Q ss_pred C
Q 001258 650 G 650 (1113)
Q Consensus 650 ~ 650 (1113)
|
T Consensus 219 G 219 (311)
T KOG1446|consen 219 G 219 (311)
T ss_pred C
Confidence 7
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=259.67 Aligned_cols=244 Identities=19% Similarity=0.339 Sum_probs=215.1
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
|...+.|..|+ ++ .+++|+.+.+|++||..++..+.. .+.||.+.|++++|..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 67899999999 44 389999999999999999988763 3889999999999988899999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+|+.|.+++|||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999887 78899999999998653 688999999999999999999999999999999998
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 596 (1113)
.+ +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.... .+++|+.|+
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D~ 392 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLDT 392 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeecc
Confidence 54 3699999999999999999999999999999999998776542 499999999
Q ss_pred cEEEEECCCC-ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258 597 SIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 597 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
.|++||+.+. +++..+..|.. .+.. ....+++|++++.|++|++||..++ ++.+.+.+
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~ 451 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEG 451 (537)
T ss_pred ceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeeecc
Confidence 9999999999 89999987754 3433 3446889999999999999999888 66665544
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=258.50 Aligned_cols=272 Identities=14% Similarity=0.174 Sum_probs=203.0
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe------------------------------ee------e
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------RN------F 399 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~------------------------------~~------~ 399 (1113)
.|.+.||++.||+||+| ||+|+.||.|+||.+...+.... .. .
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 49999999999999996 99999999999999876221100 00 0
Q ss_pred -----eeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEc
Q 001258 400 -----KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 474 (1113)
Q Consensus 400 -----~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 474 (1113)
.+.+....-.+.+...+.||.+.|..+.||.++ +|++++.|.+|+||++...++++ .-.|.+-|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 000000000111223588999999999999755 88999999999999999999887 33699999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC
Q 001258 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 554 (1113)
Q Consensus 475 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 554 (1113)
|-+.+ ||++|+-|+.||||++...+.+.-.. -..-|+++||.| ||++.+.|+.+|.+++|+....+.......+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-- 492 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-- 492 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEecc--CCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence 98776 89999999999999998777655444 448899999764 5789999999999999998865544322111
Q ss_pred ceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE
Q 001258 555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633 (1113)
Q Consensus 555 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 633 (1113)
-.+.+- ...+.|+.+.|.|.. ..+++.+.|..|+|||.++..++..+++......-....|+.||++|
T Consensus 493 --------~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 493 --------LHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred --------eccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 000000 001134444444332 25888899999999999999999999876655555678999999999
Q ss_pred EEEECCCcEEEEEcCCC
Q 001258 634 AVSTNDNGIKILATSDG 650 (1113)
Q Consensus 634 ~~~~~dg~i~iwd~~~~ 650 (1113)
++++.|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.6e-27 Score=219.24 Aligned_cols=287 Identities=17% Similarity=0.255 Sum_probs=224.6
Q ss_pred EEEEEcCC--CCeEEEEEec-----CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CC
Q 001258 362 MSMDFHPV--QQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS 433 (1113)
Q Consensus 362 ~~~~~spd--g~~ll~~gs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 433 (1113)
.++.|||- ++..+|+++. .|.+.|-++..++.+.. ++.+| -.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 68899994 4433444332 57899999875554432 22222 3458999999994 56
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1113)
.+++++.||+++|||+.-. -.++..++.|...|.++.|++..++ .++++|-|++|++|+...++.+.++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7788899999999995432 3355578999999999999998877 677789999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
...|+|... +++++++.|+++++||++.......++.|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999998654 7999999999999999998887777888888788887776554 3589999
Q ss_pred cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 594 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
.|+.|+.||++..+ ++..+.+| .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 99999999998744 56666555 55899999999 457899999999999999987766666666665432211
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1113)
+... .+...+++.+.|..+.+|+-
T Consensus 285 -----------------------------------Dws~-~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 -----------------------------------DWSL-FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------------------cccc-ccCceeeecccccceeeecc
Confidence 1111 25778999999999999973
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=5.3e-27 Score=226.32 Aligned_cols=247 Identities=13% Similarity=0.210 Sum_probs=201.4
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
|...|..+.|+|....|++++.|+++++||+........- ..+ .....|.++.|.|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~--------------------K~~---qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF--------------------KVF---QDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH--------------------HHh---hccceeeeEeecCC
Confidence 8899999999999999999999999999998743211000 001 14678999999999
Q ss_pred CCEEEEEeC-CeEEEEECCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec-ccc-c
Q 001258 830 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K 903 (1113)
Q Consensus 830 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~ 903 (1113)
|.+|++|.| .++++||+.+.+|...- ..|...|+++.+++ .+++.++|+.||.|+|||--+++|+.++. +|. .
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999995 78999999998886553 45788999999999 89999999999999999999999998874 465 4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 981 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~ 981 (1113)
.|.+..|+.+|+++.+.+.|.+|++|.+.+++....-.-.-..+.. ..-+...|+....|++.- ..+.++-||.+
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeecccc
Confidence 6999999999999999999999999999997654321111111111 123556777777777773 45679999999
Q ss_pred ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
++..+..+.. +|++.+..+.-||.+.-+++++.|-.+++|--
T Consensus 384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 9998888775 89999999999999999999999999999964
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=221.17 Aligned_cols=240 Identities=20% Similarity=0.251 Sum_probs=207.9
Q ss_pred CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc--EEEEEecCCcEEEEEcccc
Q 001258 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~v~iwd~~~~ 892 (1113)
.|...|+++|+ ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ ... .|.+|++||.|.+|+..++
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 49999999998 789999998 99999999999999999999999999999998 543 8899999999999999999
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d 972 (1113)
+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+++.... .... + ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v--~~L~--~-----~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV--LNLK--N-----KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--eccC--C-----cceeeEEcCCCCEEEEEec
Confidence 99999999999999999999999999999999999999988765322 1111 1 2356999999999999999
Q ss_pred CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEE
Q 001258 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~ 1052 (1113)
..|-+|.+.+......... ...+.++.|. ++..|++|++|+.|.+||.++....+.+. +|..+|..+..
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~~ 257 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENRVKDIAS 257 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhheeeeEE
Confidence 9999999998888777653 3567777775 56789999999999999999988887776 99999998655
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258 1053 AAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1053 ~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
--.| ++.+|++++.||.|+|||+...
T Consensus 258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecC-CceEEEEeccCceEEEEEcccc
Confidence 4445 6789999999999999999876
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=256.07 Aligned_cols=273 Identities=15% Similarity=0.244 Sum_probs=214.2
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc------C---------CCC--------------ceee------
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER------N---------SSG--------------KATA------ 793 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~------~---------~~~--------------~~~~------ 793 (1113)
.|.+.|.++.|++||++||++|.|+.|+||.+..... . ..+ ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876110 0 000 0000
Q ss_pred eecCeecCCCCcc---ccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEec
Q 001258 794 SVAPQLWQPPSGI---MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869 (1113)
Q Consensus 794 ~~~~~lw~~~~g~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 869 (1113)
... .+.+..... .....+. +|...|..+.||.++ +|++++ |.+||+|++....|+..|. |...|||++|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhhh--ccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 000 011111111 0111233 499999999999876 677777 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001258 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1113)
Q Consensus 870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1113)
.|.+|+++|+-||.||||++...+++.-...+ +-|++++|+|||+..+.|+-+|.+++|+....+......+.......
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999987766544444 78999999999999999999999999999887766655555555555
Q ss_pred CCCCCCceEEEccCCc--EEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 950 PTAQSDTRVQFHQDQI--HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 950 ~~~~~i~~~~~spdg~--~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
.....|+.+.|.|... .|+++.|..|+|||..+...+..|..-.....-....|+.||++|+++++|..|+||+++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 5455799999997544 77789999999999998888888874333445577899999999999999999999998543
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.5e-26 Score=261.60 Aligned_cols=304 Identities=18% Similarity=0.263 Sum_probs=238.8
Q ss_pred ccCceEEEEEeCCCceEEEee--cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258 750 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s 827 (1113)
+...|.++.++|+|..+++++ .|+.++||+.+.-... ...++..-...+. .-..|...|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k~l~---~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPKHLC---TMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccchhhe---eeccccCceeEEEEC
Confidence 456689999999999999999 7889999987632110 0112221111111 112389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC------------------CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 828 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 828 ~~~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
|||++||+|+ |+.|.||+... .++...+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 67789999762 235677899999999999999 899999999999999999
Q ss_pred cccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
..+.+.+..+++|.+.|-++.|.|-|+++||-+.|++|+||++......+. +..+..+.+.......+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--ITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--eccchhhCCCcceeeecccCCCcCeec
Confidence 999999999999999999999999999999999999999999777544322 222223333334678899999999999
Q ss_pred E--EcC---CeEEEEeCCccceeeccccCCCCCCeeEEEECCC-----CC------------EEEEEeCCCcEEEEecCC
Q 001258 969 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 969 ~--~~d---~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~s~~~Dg~v~vwd~~~ 1026 (1113)
+ +.+ ..+.|.+..+.+.-..+. +|.+++.++.|+|. .+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 323 368899988888777776 89999999999881 11 578999999999999987
Q ss_pred CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1027 LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1027 ~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
-+.+..+. .. -...| +.++|+| ||..|..+|.||+|.+..++..|
T Consensus 314 ~RPl~vi~--~l----f~~SI--~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--NL----FNKSI--VDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--hh----hcCce--eeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 77765433 00 01223 3699999 89999999999999999998776
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=218.23 Aligned_cols=322 Identities=16% Similarity=0.236 Sum_probs=232.8
Q ss_pred EEEEECCCCceEEEEc---cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258 598 IKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1113)
Q Consensus 598 i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1113)
.+-|+.+..+..+.+. ..+|...|++++|+.||++|++++.|++|++|++.+-.. +.|....
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~R---------- 127 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCIR---------- 127 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHhh----------
Confidence 4456655544433331 224456899999999999999999999999999876311 1111000
Q ss_pred cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1113)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1113)
..+ ..+.-
T Consensus 128 --------------------------------------------------------------------~nv----e~dhp 135 (420)
T KOG2096|consen 128 --------------------------------------------------------------------QNV----EYDHP 135 (420)
T ss_pred --------------------------------------------------------------------ccc----cCCCc
Confidence 000 12245
Q ss_pred EEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEE
Q 001258 755 SRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1113)
Q Consensus 755 ~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l 833 (1113)
+.+.|+||-+.+++.... ..+++|.+...+- |...-. ..-||-. . + ...|.-.+..+-+..++++|
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--~-----f-~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--E-----F-ERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--c-----c-chhcccceEEEeecCCceEE
Confidence 788999998877766654 6899998754321 111110 0112210 0 0 01266677778888899999
Q ss_pred EEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc---cc-----eeeeeecccccC
Q 001258 834 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR---VD-----EVKSKLKGHSKR 904 (1113)
Q Consensus 834 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~---~~-----~~~~~l~~h~~~ 904 (1113)
++++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+++-.--|++|.+- .| ..+-.|+||...
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred EEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 9999 8899999998 888888887777788899999 99999999999999999873 22 234578999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC---CCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~ 981 (1113)
|+.++||++.+.++|+|.||+++|||++-.-.....+.....+. ....+....+.++|.|+.||++....+.+|..+
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se 360 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE 360 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence 99999999999999999999999999865322211111111110 011134458999999999999999999999999
Q ss_pred ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
+|+....+. +.|...|.+++|++||+++++++ |..++|+.
T Consensus 361 ~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 361 DGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 998877766 47899999999999999999998 88888876
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=237.84 Aligned_cols=286 Identities=19% Similarity=0.330 Sum_probs=233.8
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.+.|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 467899999999999999999999999999999998776 334447888899999999999999 68999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
++.+.+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..++- ....+..+..+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec------------
Confidence 999999999999999999999876544 349999999999999998755544322 22223333322
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
...+++|-.|+.|++||.++..+......++ .|+++..++++..+.+++.|.++.+.|+.+. +..
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1237788899999999999999999887765 5999999999999999999999999998765 221
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+
T Consensus 377 ~~~----------------------------------------------------------------------------- 379 (459)
T KOG0288|consen 377 QTF----------------------------------------------------------------------------- 379 (459)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
+..|-
T Consensus 380 -------------------------sA~g~-------------------------------------------------- 384 (459)
T KOG0288|consen 380 -------------------------SAEGF-------------------------------------------------- 384 (459)
T ss_pred -------------------------ecccc--------------------------------------------------
Confidence 11110
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg~v~iw 887 (1113)
......+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 0122367789999999999998 99999999999999888765554 499999999 89999999999999999
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.8e-26 Score=254.26 Aligned_cols=287 Identities=18% Similarity=0.263 Sum_probs=239.5
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 467789999997 77899999999999999999887652 3899999999999987455 79999999999999999
Q ss_pred CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
+|.|.+++.+|.+.|.++.... ..+++|+.|.+|++|++.++..+..+.+|...|.++... +
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~------------ 341 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E------------ 341 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C------------
Confidence 9999999999999999987432 578889999999999999988888888888888888776 2
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
.++++|+.|++|.+||+.+++++..+.+| ...|.++.+.+. ..+++|+.|++|++||+.+..+++..+
T Consensus 342 ---------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 342 ---------PLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ---------CEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 26999999999999999999999999986 558999988765 899999999999999998774333333
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1113)
.+|
T Consensus 410 ~~h----------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 410 QGH----------------------------------------------------------------------------- 412 (537)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 222
Q ss_pred CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 817 (1113)
T Consensus 413 -------------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 413 -------------------------------------------------------------------------------- 412 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
..-+..+. ..+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||.+++||+.++++.
T Consensus 413 ~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 413 TSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 22221122 2566788887 99999999999999999998 67888888876 247888999999999999999988
Q ss_pred eeecccc
Q 001258 896 SKLKGHS 902 (1113)
Q Consensus 896 ~~l~~h~ 902 (1113)
+.+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774443
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=234.53 Aligned_cols=286 Identities=17% Similarity=0.254 Sum_probs=232.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....|.+++|+|...+=++....-.+.+|+... -....... .....++++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~s---rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFS---RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHH---hhccceeEEEeecC
Confidence 457899999999776655555555677765432 11111111 15678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1113)
|+++++|. .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999998 69999999888778899999999999999999999999999999999999999988877999999999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceee
Q 001258 909 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987 (1113)
Q Consensus 909 ~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~ 987 (1113)
+|+|-. ..++|||.||+|++||+.... ........+ .+|..+.+-|.|..++++....++|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999864 588999999999999998843 112222222 37899999999999999999999999999665544
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
.... .|...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+. -.+.|.+ ++.+| |+..++.|..
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--------~~~pvLs--iavs~-dd~t~viGms 299 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--------YPGPVLS--IAVSP-DDQTVVIGMS 299 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--------cccceee--EEecC-CCceEEEecc
Confidence 4332 489999999999999999999999999999999999998875 2345665 56667 6789999999
Q ss_pred CCcEEEEeccCCC
Q 001258 1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus 1068 Dg~v~vW~~~~~~ 1080 (1113)
||.+.+=+...++
T Consensus 300 nGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 300 NGLVSIRRREVKK 312 (487)
T ss_pred cceeeeehhhccc
Confidence 9999887655554
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=218.13 Aligned_cols=251 Identities=13% Similarity=0.257 Sum_probs=210.0
Q ss_pred eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1113)
Q Consensus 352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1113)
.+.+.-.+.+..|+||+.-...+++++.||.++|||...... +...++.|..+|.++.|++
T Consensus 54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence 344556789999999999888899999999999999543221 2225889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
+++.+++++-|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|..
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 66778888999999999999887666 89999999999999998776 899999999999999987555555899999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
.|.++.|+... ..+++||+.|+.|++||++..+. +..+.+|+-.|..+.|||... ..|
T Consensus 192 Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~lL 250 (311)
T KOG0277|consen 192 EILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SLL 250 (311)
T ss_pred eeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hHh
Confidence 99999997654 47999999999999999997654 457788888999999998765 358
Q ss_pred EEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEc
Q 001258 590 LAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 647 (1113)
++++.|-+++|||... ...+.+...| ...+..+.|++ ++.++|+++-|+.+.||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999874 3455566555 44688899998 7889999999999999974
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-25 Score=215.44 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=193.9
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc-ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
...+.|.+++|||....++++||-||+|++|+++.. .... .....|.++|.+++||.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 367999999999976667889999999999999863 3221 246789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
+++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||.|++|+.||++...++.++. -...+.+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 999999999999999999644 47789999999999887765589999999999999999999998887 4567777
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-e-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
+..-. .+++.+..++.|.+++++++...... . ...-.+.+ ++...+....+.|
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~---------------------va~f~d~~~~alG 216 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRC---------------------VACFQDKDGFALG 216 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeE---------------------EEEEecCCceEee
Confidence 65322 47888999999999999865443321 1 11123344 4444444457889
Q ss_pred ecCCcEEEEECCCC--ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 593 GDDFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+-+|.+-|..++.+ +.-..++.|.. ...|++++|+|.-..|++++.||++.+||-...
T Consensus 217 siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 99999999999886 33344444432 235789999999899999999999999996543
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.4e-26 Score=257.91 Aligned_cols=280 Identities=20% Similarity=0.306 Sum_probs=223.6
Q ss_pred CCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
++..|.++..+|||.. +|||+ .||.++||+.+.--. ..+.++.. .+........|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3567999999999996 99999 899999999753110 00011111 22233357789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258 435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 499 (1113)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. +++++|.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 12345567999999999999999999 8999999999999999999
Q ss_pred ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC------CCceEEEEEccCCCe------
Q 001258 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTR------ 567 (1113)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~------ 567 (1113)
+++.++.+|.+.|..+.|.| -|+|+++-+.|++|++|++.+-.....+..+ ...+..+.|||||.+
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999765 5589999999999999997765555544433 336788999999993
Q ss_pred --------------------EEeccccCceeEEEecCC-------------CC----EEEEEecCCcEEEEECCCCceEE
Q 001258 568 --------------------TYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT 610 (1113)
Q Consensus 568 --------------------~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 610 (1113)
.+.||+. .+.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 3445555 8889999873 11 56779999999999997777765
Q ss_pred EEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
....-. ...|..++|+|||..|++++.||+|.++.....
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 553222 246899999999999999999999999988653
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=244.33 Aligned_cols=253 Identities=19% Similarity=0.262 Sum_probs=208.4
Q ss_pred CCCCcE---EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 357 h~~~V~---~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
|...|. ++..+..+.+.|++|+.||.|++|++....... +.++.. .+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence 444455 556665444359999999999999987543321 122222 4788999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE-cCCCCeeEEEEecCCCcEEEEeCCCC--ceeeE------
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQYI------ 504 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~------ 504 (1113)
.|+++|.|-+|++|+...+. -....+++.|.+.|.|++. -++.. ++||||-|+.|.+||+.+| +.+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998773 1233378899999999999 66666 8999999999999999987 23332
Q ss_pred --ee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+. |+...|.+++.+ ++|..+++|+..+.+++||.++...+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 22 788899999854 5557999999999999999999999999999988888888887776
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.+++++.||+|++||+...+++.++..|.. .|.++..+|+=..+++|+.||.|..-|+.+.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 699999999999999999999999988854 5999999999999999999999998888775
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=211.10 Aligned_cols=247 Identities=18% Similarity=0.266 Sum_probs=208.4
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 432 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 432 (1113)
+.+|...|.+|+|+.+|.+ |++|+.|+++.+|+++....... ....+|.+.|-.++|+| +.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred hhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCC
Confidence 3458999999999999997 99999999999999987744321 14789999999999998 77
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
..|++++.|.+|++||+..+++...+ . ..+.=..+.|+|+|. +++.++.|..|.+.|.++.+.....+ ..-.+
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ 150 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV 150 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-cccee
Confidence 89999999999999999999987633 2 234456789999999 79999999999999998887766554 44567
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.-++|+.++ ++++.....|+|.|-.....+++..+..|...+.++.|+|+|+ ++++|
T Consensus 151 ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~G 207 (313)
T KOG1407|consen 151 NEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFATG 207 (313)
T ss_pred eeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEeec
Confidence 778887444 5677677789999999998888888888887777777777776 79999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.|..+.+||++..-+++.+.... -+|+.++|+.||++||+++.|..|-|=++.+|
T Consensus 208 sADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccceeeccChhHhhhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999999999999999887664 47999999999999999999999988888777
No 96
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=7.5e-25 Score=247.55 Aligned_cols=262 Identities=13% Similarity=0.136 Sum_probs=197.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1113)
|-..|....+++|+.. +++++.+.....|+...+..+. +.-..+..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4566778888889774 6777788888899876654321 11111111122235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258 436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234478899999999999998644 7999999999999999999999999999999
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-eEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
|.+++|++ +|.+|++++.|+.|++||++++.....+..|... ...+.|. +++..++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~---------------------~~~~~iv 227 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA---------------------KRKDLII 227 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc---------------------CCCCeEE
Confidence 99999876 4579999999999999999987766666555432 2233344 4444566
Q ss_pred EEe----cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258 591 AAG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1113)
Q Consensus 591 ~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 650 (1113)
+++ .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 543 47999999998754 333333222 23455667899999999887 5999999999887
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=231.32 Aligned_cols=222 Identities=21% Similarity=0.302 Sum_probs=162.7
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 492 (1113)
.+.+|+..|.++++.|.|.+|++|+-|.+|+.||...-.. .+.+..+. .....|.++.|++.|.++++++| ...++
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--Cccee
Confidence 4788999999999999999999999999999999975321 11111222 23347999999999996444444 56889
Q ss_pred EEeCCCCceeeEe-------------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 493 VWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 493 iwd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
|+| +.|..+..+ +||...++|.+|+|... ..+++++.||++++||+...........+..
T Consensus 240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~----- 312 (641)
T KOG0772|consen 240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP----- 312 (641)
T ss_pred EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc-----
Confidence 999 555544332 48999999999999765 5899999999999999987554332211100
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
..|. .-.+..++|+++++++++|+.||.|.+|+...... ...-..|.....|+|+.||+||++|++-
T Consensus 313 ---~~g~-------Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 313 ---AGGK-------RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred ---CCCc-------ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 0011 11455667777777899999999999999754322 2222344444589999999999999999
Q ss_pred ECCCcEEEEEcCCCcccee
Q 001258 637 TNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~ 655 (1113)
+.|+++++||+....+++.
T Consensus 383 g~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred cCCCceeeeeccccccchh
Confidence 9999999999987654443
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-26 Score=244.07 Aligned_cols=367 Identities=16% Similarity=0.190 Sum_probs=268.8
Q ss_pred EEEEc-CCCCeEEEEeCCCeEEEEEccCCcee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001258 425 RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG- 499 (1113)
Q Consensus 425 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~- 499 (1113)
.+..+ |+++||.+||.||.|++|++...... .....+..|.+.|+.++...+++ .|+++|.|.+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 47788999999999999998754321 12346889999999999999998 6999999999999999887
Q ss_pred -ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCcee
Q 001258 500 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1113)
Q Consensus 500 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 578 (1113)
-|+.++..|.+.|.|+++- ..+..++++||.|+.|.+||+.++......
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~----------------------------- 156 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVA----------------------------- 156 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhh-----------------------------
Confidence 6788999999999999963 345579999999999999999875331100
Q ss_pred EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
+ .+.+..-++.. +....|++++-++.|..+++|+..+.+++||..+..+.++
T Consensus 157 --------------s-~n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--- 208 (735)
T KOG0308|consen 157 --------------S-FNNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--- 208 (735)
T ss_pred --------------h-ccccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee---
Confidence 0 00111111111 2245688999999999999999999999999877632211
Q ss_pred cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 738 (1113)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 738 (1113)
T Consensus 209 -------------------------------------------------------------------------------- 208 (735)
T KOG0308|consen 209 -------------------------------------------------------------------------------- 208 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCC
Q 001258 739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818 (1113)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 818 (1113)
+. +|.
T Consensus 209 -------------------------------------------------------------------------Lr--GHT 213 (735)
T KOG0308|consen 209 -------------------------------------------------------------------------LR--GHT 213 (735)
T ss_pred -------------------------------------------------------------------------ee--ccc
Confidence 11 277
Q ss_pred CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
..|.++..+.||..+++++ ||+|++||+...+|+.++..|...+.++..+| +-..+.+|+.||.|..=|+.+......
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl 292 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL 292 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence 7788888888998888887 99999999999999999999999999999999 889999999999999999988432222
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v 977 (1113)
+-....+|..+..+.+.+-+-+++.|+.|+-|..... ..+++.|.+...+.+....+
T Consensus 293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~-----------------------~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD-----------------------IALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred eecCCCchhhhhhccccCCceeeeccccceecCCccc-----------------------cccccCCCCCcccccCCCcc
Confidence 3234456777777644444466778999999976541 13444444444444444444
Q ss_pred EeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
++... .. ....+| ...|..-++-.|.+++++-..+|.+.+||+-....+..+.
T Consensus 350 ~~~~~-tp--~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 350 CDLTN-TP--DSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccC-CC--ceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44321 00 011111 4467777778899999999999999999997766665443
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-25 Score=242.06 Aligned_cols=258 Identities=16% Similarity=0.260 Sum_probs=218.5
Q ss_pred CCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-C
Q 001258 342 STPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-P 419 (1113)
Q Consensus 342 ~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 419 (1113)
+........+..+.. +.+.|+++.|+++|.+ ||+|..+|.|.|||..+.+.+.. +.+ |
T Consensus 200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h 259 (484)
T KOG0305|consen 200 YLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSH 259 (484)
T ss_pred EEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCc
Confidence 334444555555555 4899999999999995 99999999999999998877653 455 9
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 499 (1113)
...|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..++|++|+. ++++|+.|+.+.|||....
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCc
Confidence 9999999998 77899999999999999998776543 4889999999999999999 7999999999999999888
Q ss_pred ceeeEeeccCcCEEEEeeeecCCceEEEEEec--CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
.++..+..|.+.|.+++|+|... .+||+|+. |++|++||..++..+.... .+..|.++.|++..+.
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kE---------- 401 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKE---------- 401 (484)
T ss_pred cccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCE----------
Confidence 99999999999999999999876 48888764 9999999999766555433 4556778888777653
Q ss_pred eEEEecCCCCEEEE--EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 578 GVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+++ |..++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 402 -----------i~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 402 -----------LLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -----------EEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 444 557889999999999999888877 457999999999999999999999999998764
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=229.51 Aligned_cols=301 Identities=20% Similarity=0.255 Sum_probs=224.5
Q ss_pred CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1113)
Q Consensus 616 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1113)
.+...|.++++.|.|-.+++|+.|.+|++||+.......+.++.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~------------------------------------ 208 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ------------------------------------ 208 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc------------------------------------
Confidence 44668999999999999999999999999998654222221110
Q ss_pred ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1113)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 775 (1113)
+. ......|.++.|++.|..|++.+.....
T Consensus 209 --------------------------------------------l~------P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 209 --------------------------------------------LQ------PCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred --------------------------------------------cC------cccccccceeeecCCCCeEEEEecCcce
Confidence 00 1145678999999999999999999999
Q ss_pred EEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCce-
Q 001258 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT- 851 (1113)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~- 851 (1113)
+|+|-... .. -....|. .+.......+|...++|.+|+|+.+ .+++++ ||++|+||+...+.
T Consensus 239 kl~DRdG~-------~~-------~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 239 KLLDRDGF-------EI-------VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred eEEccCCc-------ee-------eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 99986521 11 1111222 1111122235888999999999876 445555 99999999985443
Q ss_pred eeeec-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---eeeeeccccc--CeEEEEEcCCCCEEEEEe
Q 001258 852 MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 852 ~~~~~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~L~s~s 921 (1113)
+..+. +..-.++.++|++ |++++|+|+.||.|.+|+..+.. ....-.+|.. .|++|.||+||++|+|-|
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 33332 2344689999999 99999999999999999985532 2234467887 999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc-------CCeEEEEeCCccceeeccccCCC
Q 001258 922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRES 994 (1113)
Q Consensus 922 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~-------d~~v~v~d~~~~~~~~~~~~~~h 994 (1113)
.|+++++||++..+.........+.. ..-+.++||||.++|++|. .+.+.+||..+.+.+..+...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCcc-----CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 99999999999865433222222221 2458899999999999842 357999999999998887643
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 995 SAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
...|..+.|.|.-..|++|+.||+++||--
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEEeecchhhheeeecCCCceEEEEC
Confidence 778999999999999999999999999744
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.3e-25 Score=229.93 Aligned_cols=269 Identities=14% Similarity=0.227 Sum_probs=218.8
Q ss_pred ceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
++...+.|.++|+.+.+.|....++|+++..+.|.|||+.+....... .+.-.+...+.||...=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345567799999999999999999999999999999999765433210 00111223688999988899999
Q ss_pred C-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC--CCcee
Q 001258 430 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ 502 (1113)
Q Consensus 430 p-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~--~~~~~ 502 (1113)
+ ..-+|++++.|++|++||+..... +.....+.+|.+.|..++|.+-... +|++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 455889999999999999985433 5556678999999999999998887 79999999999999999 56666
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+...+|.++|+|++|+|.. +..|++||.|++|.+||+++... +..+..|...|..+.|+|+..
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e--------------- 329 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE--------------- 329 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence 7888999999999999865 57999999999999999998765 457888999999999999876
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCc------------eEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcC
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS 648 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 648 (1113)
..|++++.|+.+.+||+..-. +...|...+|...|..+.|+|+.. .+++.+.|+.+.||...
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 358889999999999986422 122355556778899999999665 56778899999999876
Q ss_pred C
Q 001258 649 D 649 (1113)
Q Consensus 649 ~ 649 (1113)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 4
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.4e-24 Score=208.43 Aligned_cols=288 Identities=14% Similarity=0.194 Sum_probs=226.1
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....|.++.|+++|..+++++.|..+++||...+.+ +.. +. .+...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----------------------~~t-i~--skkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----------------------VKT-IN--SKKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----------------------eeE-ee--cccccccEEEEecC
Confidence 467899999999999999999999999998764332 111 11 14556788888877
Q ss_pred CCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE
Q 001258 830 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1113)
Q Consensus 830 ~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1113)
...++.++ |.+||..++.+.+.++.|.+|...|++++.+| .+..+++++.|++|++||++..++...+..... .
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--c
Confidence 76666665 78999999999999999999999999999999 678999999999999999998887766654333 3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~ 985 (1113)
.++|.|+|-++|.+.....|++||++..............+ .......+.|||||+++..+ ..+.+.+.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 57899999999999888899999998864433222222222 12467899999999999985 677899999999998
Q ss_pred eeccccCCCCC-CeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC-cccCccceEEEEeCCCCCEEE
Q 001258 986 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG-VSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 986 ~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g-h~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
...+....... --...+|+||++++++|+.||+|.+|++++++.+..+. + +.+.+. ++.|.| .+..
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~-------~~~~~~~~--~~~fnP---~~~m 289 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR-------GPNGGPVS--CVRFNP---RYAM 289 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec-------CCCCCCcc--ccccCC---ceee
Confidence 88877433322 23678999999999999999999999999999999887 4 445555 366877 3444
Q ss_pred EEeCCCcEEEEeccCCC
Q 001258 1064 LGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1064 s~~~Dg~v~vW~~~~~~ 1080 (1113)
-++.+..+-+|-....+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 44557889999877655
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.1e-25 Score=237.49 Aligned_cols=241 Identities=17% Similarity=0.302 Sum_probs=205.9
Q ss_pred eeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE-EEE
Q 001258 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW 428 (1113)
Q Consensus 351 ~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~ 428 (1113)
+.+.+. |.+.|..+++.+.. .+++|+.||++++|+-..++-+.. +.+.+|.+.|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 445555 99999999988887 488999999999999765554432 246778888888 888
Q ss_pred cC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258 429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 429 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 507 (1113)
-+ ++-+|++|+.|.+|.+|.+.+...+. +|.+|...|+++....++. ++|||.|.++++|- .+++...+.+
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g 138 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG 138 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence 76 66679999999999999999988665 8999999999999888876 89999999999995 4677788999
Q ss_pred cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
|...|+++...+. +.++||+.|++|++|.- ++...++.+|...|..+++-+++.
T Consensus 139 H~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~--------------------- 192 (745)
T KOG0301|consen 139 HTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH--------------------- 192 (745)
T ss_pred cchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence 9999999986544 38999999999999965 567888999999999999999876
Q ss_pred EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
+++++.||.|++|++ +|+++..+.+| ...|.+++...++..+++++.|++++||+..
T Consensus 193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999999 77887777555 6679999988889999999999999999865
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-26 Score=224.83 Aligned_cols=284 Identities=17% Similarity=0.223 Sum_probs=216.8
Q ss_pred ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++. ++..|.+.|..|++.. + .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999987 889999999999999999988776 7999999999999987 3 48999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
-+.- .+++++.+. ..+..+.-+. .++.++|+|.+ |.|||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILGK-SVYLGIDHHR--KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeecc-cccccccccc--ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9764 467777643 3445554322 23578888754 89999987777666665555666666666544
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
+.|++++.|+.|.+||++++.++..+...- .-+.++|+|.+-.+++|+.|..++.+|+......+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence 246777799999999999999888775443 34789999988889999999999999876542222
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
....
T Consensus 266 ~v~~---------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 266 NVHK---------------------------------------------------------------------------- 269 (433)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
+|.+.|.++.|||.|+-+++|+ |.+|+||....+...-.+. ..-..|.|+.||. |.+++++|++|+.|++|.....
T Consensus 270 -dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 270 -DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred -ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence 1556667777777777777777 7788888776554332221 1234699999999 9999999999999999987654
Q ss_pred e
Q 001258 893 E 893 (1113)
Q Consensus 893 ~ 893 (1113)
+
T Consensus 348 e 348 (433)
T KOG0268|consen 348 E 348 (433)
T ss_pred h
Confidence 3
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-25 Score=236.43 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=227.9
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1113)
+=+.||..+ +||+|. ...|.+|+..+++.... ...+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 446788555 477764 55899999999885542 23337899999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE-eeccCcCEEEEeeee
Q 001258 442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH 519 (1113)
Q Consensus 442 ~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 519 (1113)
|.|.|||..+.+.++ ++.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999887666 6777 99999999998 34 689999999999999998776655 889999999999875
Q ss_pred cCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe--cCCc
Q 001258 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS 597 (1113)
Q Consensus 520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~ 597 (1113)
++.++++|+.|+.+.|||.........+..|...|..++|+|-.. +.||+|+ .|+.
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC 369 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence 458999999999999999988889999999999999999998654 3477754 7999
Q ss_pred EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE--ECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1113)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1113)
|++||..+++.+..+... ..|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 370 i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------ 427 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------ 427 (484)
T ss_pred EEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee------------------
Confidence 999999999999888654 359999999988766664 44667888887653 222222
Q ss_pred ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1113)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1113)
.+|..+|.
T Consensus 428 ------------------------------------------------------------------------~gH~~RVl 435 (484)
T KOG0305|consen 428 ------------------------------------------------------------------------LGHTSRVL 435 (484)
T ss_pred ------------------------------------------------------------------------cCCcceeE
Confidence 23788899
Q ss_pred EEEEeCCCceEEEeecCCeEEEEEcc
Q 001258 756 RLIFTNSGNAILALASNAIHLLWKWQ 781 (1113)
Q Consensus 756 ~~~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1113)
.++++|||..+++++.|.++++|++-
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999999999999999854
No 106
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.8e-24 Score=242.95 Aligned_cols=264 Identities=16% Similarity=0.200 Sum_probs=200.7
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-C
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 829 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~ 829 (1113)
-..|.....++++..+++++.+.....|+...+. ..++....|+.......-.+|...|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3445556677787778888888888888754221 11333334443321111124999999999999 8
Q ss_pred CCEEEEEe-CCeEEEEECCCC-------ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258 830 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1113)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999998 999999999764 3467789999999999999954579999999999999999999999999999
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E----cCCeEE
Q 001258 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 976 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~----~d~~v~ 976 (1113)
.+.|++++|+|+|.+|++++.|++|++||+.+++.. ....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-----~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-----SSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-----EEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 999999999999999999999999999999986532 22233322 23456788998887776 3 378999
Q ss_pred EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeec
Q 001258 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++.+...
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 99998765332222112345566778999999999887 5999999999998877654
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6e-24 Score=195.86 Aligned_cols=308 Identities=14% Similarity=0.137 Sum_probs=228.2
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....|.+++|+|.|...++++...+.+|.....-.....+...+. ....++.. ....|.+.|+|.+|+|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~--------~pp~v~~k--r~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK--------QPPSVLCK--RNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc--------CCCeEEee--eccccCccEEEEEecCc
Confidence 567899999999999999999999999976542111000000000 00011111 11238899999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCce-----eeeecCCCCCeeEEEEecC---CCcEEEEEe-cCCcEEEEEcccceeeeeec
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~ 899 (1113)
|+++++|+ |.+|++.......+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+..+.+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 88999876653322 2457779999999999642 456788765 57788898999999999999
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEE
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF 978 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~ 978 (1113)
+|.+.|.++- +-+|-.+++|+.|.+|++||+.-..+....-.... +.......|..++..|.|++|+++ .|....+|
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~-~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH-DGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc-CCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 9999998873 34688999999999999999987554332211111 111122578999999999999997 78889999
Q ss_pred eCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCC
Q 001258 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
|++.+..++.+. .|...|.|+.|||.-.|+++++.|..|++-|+.. .+...+. ......|...+ |.+.|+|+|
T Consensus 259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~--~~vv~ehkdk~--i~~rwh~~d 331 (350)
T KOG0641|consen 259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELP--IMVVAEHKDKA--IQCRWHPQD 331 (350)
T ss_pred EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCc--eEEEEeccCce--EEEEecCcc
Confidence 999999999987 7899999999999999999999999999999863 3333222 11112444443 459999965
Q ss_pred CCEEEEEeCCCcEEEEecc
Q 001258 1059 PNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1059 ~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
--+++.+.|.++-+|-+.
T Consensus 332 -~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 -FSFISSSADKTATLWALN 349 (350)
T ss_pred -ceeeeccCcceEEEeccC
Confidence 467888999999999764
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=219.14 Aligned_cols=282 Identities=17% Similarity=0.274 Sum_probs=229.3
Q ss_pred CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccc
Q 001258 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698 (1113)
Q Consensus 619 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1113)
..+.++...|....+.+|+.|..+.++|...+ +.+..+.|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G--------------------------------------- 259 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG--------------------------------------- 259 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC---------------------------------------
Confidence 35677777777788999999999999998777 55555543
Q ss_pred cccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEE
Q 001258 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 778 (1113)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 778 (1113)
|...|+.+.++|+...+++++.|..|+||
T Consensus 260 ---------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 260 ---------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred ---------------------------------------------------cceEEEEEEeccchhheeecCCcceEEee
Confidence 56678899999999999999999999999
Q ss_pred EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC
Q 001258 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 857 (1113)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~ 857 (1113)
....... ... . ..|..+|+.+...|.|.||++++ |+++.+.|+.++.++.....
T Consensus 289 s~~~~s~-------------------~~~----~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 289 SVPLSSE-------------------PTS----S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred ccccccC-------------------ccc----c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 8653211 001 1 13899999999999999999999 89999999999998877653
Q ss_pred --CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258 858 --PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1113)
Q Consensus 858 --~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~ 935 (1113)
..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.+++|+.+|-+||+++.|+.|++||++..+
T Consensus 344 ~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 234589999999 99999999999999999999999999999999999999999999999999999999999998854
Q ss_pred cccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
..+...+. .. ..+..+.|.+.|++|+++ .+=+|++++-.+.+.........|.+..+++.|..+.+++++++
T Consensus 423 n~kt~~l~--~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 423 NFKTIQLD--EK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred ccceeecc--cc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence 32222111 11 257899999999999994 66667777755544433333347788999999999999999999
Q ss_pred CCCcEEEEec
Q 001258 1015 LDATVCVFSA 1024 (1113)
Q Consensus 1015 ~Dg~v~vwd~ 1024 (1113)
.|..++++.+
T Consensus 496 md~~l~~~a~ 505 (506)
T KOG0289|consen 496 MDAILRLYAL 505 (506)
T ss_pred chhheEEeec
Confidence 9999888764
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=225.93 Aligned_cols=251 Identities=18% Similarity=0.239 Sum_probs=199.1
Q ss_pred CCCCcceeEe-ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258 345 EDLPKTVTRT-LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1113)
Q Consensus 345 ~~~~~~~~~~-~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 423 (1113)
.-+.+..... -+|.+.|.|++=+|..--.+|+|+.||.|+|||+...+++. .+..|.+.|
T Consensus 52 R~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V 112 (433)
T KOG0268|consen 52 RVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLV 112 (433)
T ss_pred HHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCce
Confidence 3334444344 45999999999999984469999999999999999887766 488999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
..+++.. ..+++++.|.+|+.|.+... .++ ++.+ ...+..|.-...+. .++|||. .|.|||.....++.
T Consensus 113 ~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 113 RGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVS 181 (433)
T ss_pred eeEEecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccc
Confidence 9999986 77889999999999998863 232 4433 34566777666666 6899986 58999999999999
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.+.-....|.++.|+|... ..|++++.|+.|.+||++...++..+.... .-.. ++|+
T Consensus 182 smswG~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~---------------------Iswn 238 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM-RTNT---------------------ICWN 238 (433)
T ss_pred eeecCCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-cccc---------------------eecC
Confidence 9988889999999988765 689999999999999999877765433211 1233 4555
Q ss_pred CCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
|..-.++++++|..++.||++... ++.....| ...|.++.|||.|+-+++|+.|.+|+||....+
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 544468889999999999998743 45555544 568999999999999999999999999987665
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8e-25 Score=211.73 Aligned_cols=251 Identities=17% Similarity=0.330 Sum_probs=214.3
Q ss_pred eeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 351 ~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
+.+.+ +|++.||.++.-.... ++.+++.|.+-+||.+++|.++. .+.||.+.|++++|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIKFH 199 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEEec
Confidence 33444 5999999999988777 79999999999999999999987 478999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEc------cC------------------------------C-ceeeeeeeeecccCCeeEEE
Q 001258 430 PDGSLFGVAYSRHIVQIYSY------HG------------------------------G-DEVRQHLEIDAHVGGVNDIA 472 (1113)
Q Consensus 430 pdg~~las~~~d~~i~iwd~------~~------------------------------~-~~~~~~~~l~~h~~~V~~v~ 472 (1113)
+.+.++++++.|++..||.. .. + ..-.++..|.+|.+.|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99999999999999999972 11 0 00123456889999999999
Q ss_pred EcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeC
Q 001258 473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEA 551 (1113)
Q Consensus 473 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 551 (1113)
|...|+ -+++++.|.+..+||+++|..+..+.||....+.++-+|.. .++++.+.|.+.++||++.. ..+..+.+
T Consensus 280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999 59999999999999999999999999999999998877655 78999999999999999843 23447888
Q ss_pred CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCC
Q 001258 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG 630 (1113)
Q Consensus 552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~ 630 (1113)
|...|++..|..+.+ +++|+.|.+|++||+++.+ ++.++... ..++.++.+..+
T Consensus 356 HtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~ 410 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGH 410 (481)
T ss_pred cccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCC
Confidence 888999999888876 9999999999999998754 56666544 358889999989
Q ss_pred CEEEEEECCCcEEEEEcCCC
Q 001258 631 CLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.+++.-..+..|++||+...
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ceEEeccCCceEEEEecCCC
Confidence 99999999999999998654
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=207.73 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=161.3
Q ss_pred ccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
-....+.|.+++||| ...+++.+|.|++||+|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345677999999999 556666889999999999987422222 34667999999999999998 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|+.+++ +..+..|.++|.++.|....+-..|+||+-|++|++||.+...++.++..++. +.++.
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D-------------- 163 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD-------------- 163 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence 999995 56677799999999998777667899999999999999998877777665543 22211
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
-....++++..+..|.+|+++++..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus 164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 1123578888999999999977654332211111235789999998888899999999998877664
No 112
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.2e-24 Score=240.33 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=180.4
Q ss_pred EecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCce-
Q 001258 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 454 (1113)
Q Consensus 377 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~- 454 (1113)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4456777777765543332 47899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe
Q 001258 455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530 (1113)
Q Consensus 455 ~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 530 (1113)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 123357899999999999999875 56899999999999999999887776 667899999875 557999999
Q ss_pred cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC----cEEEEECCC-
Q 001258 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 605 (1113)
Q Consensus 531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 605 (1113)
.|+.|++||++++.....+..|.+.+.... +....|++++.++++++.++ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999998877777766665443322 12234556677888887664 799999985
Q ss_pred CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++++..+..+.....+......+++.++++|..|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 566766655544333333344557899999999999999999765
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=221.24 Aligned_cols=293 Identities=16% Similarity=0.190 Sum_probs=224.7
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee--------------eee-ecccCCeeEEEEcCCCCe
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 479 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~~~~~ 479 (1113)
....|.-+|.+|+++||+++..+++.|++|.=|++.+++..+.+ ..- ++|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 45678999999999999999999999999999999988743111 011 37899999999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|..+
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999986554 579999999999999999888888888888888888
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 639 (1113)
....-++ .+-+|+.|+++++|++.... ...+.++ ...+-|++|-.+ ..+++|+.+
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccCC
Confidence 7666555 24445699999999995433 2333333 335778888754 578999999
Q ss_pred CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1113)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1113)
|.|.+|++...+.+...-..|.....
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------ 373 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------ 373 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence 99999999877433322222211000
Q ss_pred ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCee
Q 001258 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799 (1113)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l 799 (1113)
. ....+...|++++..|....+++++.+|.+++|.+..+-..
T Consensus 374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~------------- 415 (479)
T KOG0299|consen 374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA------------- 415 (479)
T ss_pred --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-------------
Confidence 0 00013358999999999999999999999999987643210
Q ss_pred cCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1113)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 837 (1113)
...+......+.|.+++|+++|+++++|-
T Consensus 416 ---------i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 416 ---------INLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ---------cceeeecccccEEEEEEEccCCCEEEEec
Confidence 00011112567899999999999888875
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.5e-24 Score=207.21 Aligned_cols=298 Identities=15% Similarity=0.195 Sum_probs=202.7
Q ss_pred ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc-----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1113)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 488 (1113)
..|++|.+.|++++||.||++||+++.|++|+||+++.-. +++... .-+--+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccC
Confidence 3699999999999999999999999999999999998632 122111 1234688999999886 56677777
Q ss_pred CcEEEEeCCC---CceeeE--------e-eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCce
Q 001258 489 KTIKVWDATN---GAKQYI--------F-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 556 (1113)
Q Consensus 489 ~~i~iwd~~~---~~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 556 (1113)
.++++|.+.. |..... | +.|...|..+- ...++.+|++++.|..|.+|+++ ++.+..+......-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG--iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG--IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEe--ecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 8899998753 222111 1 23455555554 34667899999999999999998 55555555444444
Q ss_pred EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC---Cc---eEEEEccCCCCCCcCeEEECCCC
Q 001258 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ---LLTSIDADGGLPASPRIRFNKDG 630 (1113)
Q Consensus 557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~~v~~~~~s~~~ 630 (1113)
...+.||+| +++++++-.-.|++|.+-- |. ....+...+|...|..++|+++.
T Consensus 232 ~~aavSP~G---------------------RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 232 YDAAVSPDG---------------------RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred cceeeCCCC---------------------cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence 444455555 5788888888999998632 21 23344455667789999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccc
Q 001258 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 710 (1113)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1113)
+.+++.+.||++++||+.-..+. +...
T Consensus 291 ~r~vtvSkDG~wriwdtdVrY~~-----~qDp------------------------------------------------ 317 (420)
T KOG2096|consen 291 TRAVTVSKDGKWRIWDTDVRYEA-----GQDP------------------------------------------------ 317 (420)
T ss_pred ceeEEEecCCcEEEeeccceEec-----CCCc------------------------------------------------
Confidence 99999999999999997432100 0000
Q ss_pred cCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCc
Q 001258 711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1113)
Q Consensus 711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1113)
.. ++....+.......-..+.++|+|+.|+++. ...+.++..+
T Consensus 318 ----k~-----------------------Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se--------- 360 (420)
T KOG2096|consen 318 ----KI-----------------------LKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE--------- 360 (420)
T ss_pred ----hH-----------------------hhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc---------
Confidence 00 0000000011122233789999999665544 4466666544
Q ss_pred eeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEE
Q 001258 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845 (1113)
Q Consensus 791 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd 845 (1113)
+|......-. .|...|.+++|+++|+++++++|..++++.
T Consensus 361 -------------~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 361 -------------DGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred -------------cCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 3332222122 289999999999999999999999999987
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=214.83 Aligned_cols=282 Identities=20% Similarity=0.278 Sum_probs=232.8
Q ss_pred CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC
Q 001258 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 545 (1113)
Q Consensus 466 ~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 545 (1113)
..+.++...+... .+.+|+.|.++.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 3577788877744 69999999999999999999999999999999999988766 5899999999999999887776
Q ss_pred eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258 546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625 (1113)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 625 (1113)
......|..+|+.+...|.|. ||++++.|+...+.|+.++..+.........-.+++.+
T Consensus 296 ~~~~~~h~~~V~~ls~h~tge---------------------YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGE---------------------YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ccccccccccceeeeeccCCc---------------------EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 666677777676666665555 89999999999999999999988877653345688999
Q ss_pred ECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCC
Q 001258 626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 705 (1113)
Q Consensus 626 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1113)
|+|||.++.+|..|+.++|||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987651 1100
Q ss_pred CCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc
Q 001258 706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 785 (1113)
Q Consensus 706 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 785 (1113)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCee
Q 001258 786 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT 863 (1113)
Q Consensus 786 ~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~ 863 (1113)
+. +|.++|.+++|+.||-|||++. |+.|++||++..+...++.... ..+.
T Consensus 385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 11 2778888888888888888888 6779999998777776665332 3699
Q ss_pred EEEEecCCCcEEEEEecCCcEEEEEcc--cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 864 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 864 ~l~~s~~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
++.|.+ .|++|++++.|=.|++++-. ++.++..+..|++..+++.|..+.++|+++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999 89999999887666666532 57888899999999999999999999999999999988764
No 116
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2e-23 Score=236.32 Aligned_cols=243 Identities=14% Similarity=0.188 Sum_probs=176.8
Q ss_pred eeEeccCCCCcEEEEEcCC-CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 351 VTRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spd-g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
+....+|.+.|++++|+|+ +. +||+|+.||+|+|||+.++..... ........+.+|...|.+++|+
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~-----------~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVK-----------EIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCcccc-----------ccccceEEeecCCCcEEEEEEC
Confidence 3344569999999999998 55 699999999999999986532110 0000111467899999999999
Q ss_pred CCCCeE-EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258 430 PDGSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 430 pdg~~l-as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 508 (1113)
|++..+ ++++.|++|+|||+.+++... .+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+.+|
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 998864 789999999999999987554 343 567899999999999 7899999999999999999999999999
Q ss_pred CcCEEEEeeee---cCCceEEEEEecCC----cEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 509 EAPVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 509 ~~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
.+.+.+.++.. .+++.+|++++.|+ .|++||++.... +........ .. .+...
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~ 269 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPH 269 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEe
Confidence 98765544322 24567888888774 799999986332 222211111 00 11111
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 631 (1113)
...+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|+..
T Consensus 270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 113345678899999999999998764 44444444456778999999653
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=205.87 Aligned_cols=201 Identities=14% Similarity=0.255 Sum_probs=169.8
Q ss_pred CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-ee
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV 894 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~ 894 (1113)
|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 888999999999999999999 99999999999999999999999999999999 8999999999999999999853 45
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC
Q 001258 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1113)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~ 973 (1113)
+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+.... ...+.. ..++..++.+..+..++.- .++
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp---lATIRt-----dS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP---LATIRT-----DSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc---ceeeec-----CCccceeEeecCCceEEeccCCc
Confidence 6889999999999999866 57899999999999999884321 111111 1468899999999999994 678
Q ss_pred eEEEEeCCccceeecc--ccCCCCCCeeEEEECCCCC--EEEEEeCCCcEEEEecCCC
Q 001258 974 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
+|++||+......+.. ...+|...|+|.+|..+.- -|++++.|..+.=|.+.+-
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999866554443 3358999999999987643 4889999999999998653
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=200.77 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=205.9
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 434 (1113)
|.+-|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|.. -|.+
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 8899999998889996 9999999999999998765311 1125899999999999987 8999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-c--eeeEeeccCcC
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP 511 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~--~~~~~~~h~~~ 511 (1113)
||+++.||.|.||.-.+|+ ..+......|...|++|+|.|.+-.+.|+.++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999999884 545557789999999999999988889999999999999988754 2 22345679999
Q ss_pred EEEEeeeecCC-c-----------eEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 512 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 512 v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
|++++|.|..- | ..|++|+.|..|++|+..+..- ...+..|...|..++|.|.-..
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------- 221 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------- 221 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence 99999987621 1 4699999999999999987532 2357889999999999986421
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECCCC--ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
...++++++.||++.||..+.. ....++. +.-...+..++||..|++|++++.|+.+.+|.-.
T Consensus 222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1135999999999999987632 1111221 1223468899999999999999999999999644
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.1e-24 Score=199.00 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=180.1
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~ 492 (1113)
+...|.+.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999998888999999999999999999998876667779999999999999987 677 899999999999
Q ss_pred EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccC---
Q 001258 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 564 (1113)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 564 (1113)
||.-++|+ ..+.+..|...|++++|.|..-|-.|++++.||.|.+.+.+.... ......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99987774 345677899999999999999999999999999999999887522 2244567778899999886
Q ss_pred CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC----CEEEEEECCC
Q 001258 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 640 (1113)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg 640 (1113)
|..+-.+... .-..|++|+.|+.|+||+..+++-+..-...+|...|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111100 0135999999999999999887544333334557789999999953 5899999999
Q ss_pred cEEEEEcC
Q 001258 641 GIKILATS 648 (1113)
Q Consensus 641 ~i~iwd~~ 648 (1113)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999754
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-21 Score=216.88 Aligned_cols=518 Identities=15% Similarity=0.195 Sum_probs=320.5
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCe-eEEEEecCCCcEEEEeCCCCceee
Q 001258 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
.-.||+|+++++... +..|.||...+++++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 357899999998876 4569999999999887 78999999999999987663 478899999999999999999999
Q ss_pred EeeccCcCEEEEeeeecC-CceEEE-EEecCCcE-EEEEcCCCCCeeeeeCCCCceEEEEE-ccCCCeEEeccccCceeE
Q 001258 504 IFEGHEAPVYSVCPHHKE-NIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLGV 579 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~-~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~i~~ 579 (1113)
++..+. ++.++.+.+.. +....+ .+..|..+ .....+...... ...-..+ +..+ .....+. .-.+
T Consensus 97 t~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~-------~~~~~t~~~~~~-d~~~~~~--~~~~ 165 (792)
T KOG1963|consen 97 TFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSS-------RFVLATFDSAKG-DFLKEHQ--EPKS 165 (792)
T ss_pred EEecCC-ceeEEEechhHhCccceeEeecccceeeeeccccccccee-------eeEeeeccccch-hhhhhhc--CCcc
Confidence 887543 23333221100 000111 11111111 101001000000 0000000 0000 0000000 1234
Q ss_pred EEecCCCCEEEEEecCCcEEEEECCCCceEEEE--ccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+.+++.+.+. ....+..+.+|+...+...... ....|...+++.+++|+++++++|..||.|.+|.-...
T Consensus 166 I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------- 237 (792)
T KOG1963|consen 166 IVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------- 237 (792)
T ss_pred EEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence 5555555544 3445667889988775511111 11123344789999999999999999999999963221
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1113)
... +...++--|
T Consensus 238 ~~~------------------------------------------------------------~~t~t~lHW-------- 249 (792)
T KOG1963|consen 238 SDD------------------------------------------------------------SETCTLLHW-------- 249 (792)
T ss_pred ccc------------------------------------------------------------cccceEEEe--------
Confidence 000 000122223
Q ss_pred CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 817 (1113)
|...|.+++|+++|.+|++|+..+.+.+|.+.++.. +. ++. -
T Consensus 250 ------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------------------qf----LPR--L 291 (792)
T KOG1963|consen 250 ------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------------------QF----LPR--L 291 (792)
T ss_pred ------------cccccceeEEecCCceEeecccceEEEEEeecCCCc--------------------cc----ccc--c
Confidence 778899999999999999999999999998764321 11 222 5
Q ss_pred CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-----------CCCeeEEEEecCCCcEEEEEecCCcEE
Q 001258 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~la~g~~dg~v~ 885 (1113)
...|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| ..+.++..+..|.|.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence 78899999999999887776 999999988765554444322 23357788998 667778888999999
Q ss_pred EEEcccceeeeeec-----------ccccCeEEEEEcCCCCEEEEEeC--------C--CcEEEEeCCCCcccccccccc
Q 001258 886 IYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------D--SQLCVWSSDGWEKQKNRFLQI 944 (1113)
Q Consensus 886 iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~L~s~s~--------D--~~v~iwd~~~~~~~~~~~~~~ 944 (1113)
+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.-. | -.+++|-.....+.......+
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99998877665542 13345788888888999998632 2 347889876644332222222
Q ss_pred CCCCCCCCCCCceEEEccCCc-EEEE-EcCCeEEEEeCCcccee--------eccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 945 PTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 945 ~~~~~~~~~~i~~~~~spdg~-~l~~-~~d~~v~v~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
...|.. ..+..+.+++... ..++ +.|+.+++|-....+-+ +.....-|..++++++|+.||..|+. +
T Consensus 451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s 527 (792)
T KOG1963|consen 451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-S 527 (792)
T ss_pred ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-e
Confidence 222322 2233334444333 5555 69999999988432211 11111236889999999999976665 4
Q ss_pred CCCcEEEEecCC-CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccc
Q 001258 1015 LDATVCVFSAAN-LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus 1015 ~Dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1083 (1113)
.|++|.+||..+ .++.+....... +.++ ... .+-.+.++ .++....+.+.+|++.+..-.|
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~~~-~~~~--~~~---~~~~~~~~--~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSRNW-PIAE--LLF---TAQTQNDG--ALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cCCEEEEecCCChhhhhcccccccc-chHh--Hhh---hccccccc--ceeeccCceEehHhhhhhheec
Confidence 689999999998 555544432111 1111 111 11122233 3444557889999998877545
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-22 Score=197.53 Aligned_cols=247 Identities=16% Similarity=0.268 Sum_probs=195.9
Q ss_pred eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEE
Q 001258 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1113)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 536 (1113)
+...+..|.+.|++++.+ +. ++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+......|++|+.||.|.
T Consensus 35 ~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 455678999999999986 66 89999999999999999999999999999999999987766545899999999999
Q ss_pred EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC
Q 001258 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 616 (1113)
Q Consensus 537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 616 (1113)
+|+...-.....+..|.+.|+.++..|.|+ ..++.+.|+.++.||+-.|+.-..+....
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccCC
Confidence 999998888888888888777777777666 67789999999999999988766665443
Q ss_pred CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccc
Q 001258 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1113)
Q Consensus 617 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1113)
. ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.
T Consensus 170 ~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------------------------------------- 206 (362)
T KOG0294|consen 170 K---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------------------------------------- 206 (362)
T ss_pred c---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh--------------------------------------
Confidence 2 3459999999988887764 6777766443 1111110
Q ss_pred cccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE
Q 001258 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1113)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 776 (1113)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee
Q 001258 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF 855 (1113)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~ 855 (1113)
....+.|+.|. ++..|++|. |+.|.+||.++..+...+
T Consensus 207 ----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 207 ----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred ----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence 11123333343 445666665 788999999998999999
Q ss_pred cCCCCCeeEEEEe-cCCCcEEEEEecCCcEEEEEcccc
Q 001258 856 MPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 856 ~~~~~~i~~l~~s-~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
.+|..+|..+.+- ..++.+|++++.||.|+|||+...
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999843 226789999999999999999865
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=216.54 Aligned_cols=254 Identities=15% Similarity=0.204 Sum_probs=196.7
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
..++|.|..-|.++.+|...++ +.||+ .|.|+|||+....... ...+.. ...-...|+++.++|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~-------------PvsqLd-cl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS-------------PVSQLD-CLNRDNYIRSCKLLP 475 (705)
T ss_pred hhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC-------------cccccc-ccCcccceeeeEecC
Confidence 3567789999999999999997 88876 5889999996532110 011111 122356899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+ +.+++..||.|.|||+.+...++.|+||.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred CCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 999999999999999999987642 22223444445678899999999 788999999999999999999999999999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.+.||.++ .+|..|.+|+.|++|+.||++++......... . .|..+.++|.+.+++
T Consensus 553 GascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S---------------------QIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 553 GASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S---------------------QIFSLGYCPTGDWLA 608 (705)
T ss_pred CceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhhh-h---------------------hheecccCCCcccee
Confidence 99999864 56789999999999999999987665543321 2 333444555666899
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.|-+++.+.+-.... .....+ +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 609 vGMens~vevlh~sk-p~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSK-PEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCcEEEEecCC-ccceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 999999998887643 333333 334557999999999999999999999999987655
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.1e-23 Score=222.31 Aligned_cols=274 Identities=14% Similarity=0.235 Sum_probs=221.4
Q ss_pred ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccc-cccCCCCCCCCccE-EE
Q 001258 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA 825 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~-~~~~~~~~~~~v~~-l~ 825 (1113)
.+|...|..+++.+.. .+++++.||++++|+-... ..+. ..+. ++.+.|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence 4588888888876665 5899999999999975321 1111 1111 25555555 77
Q ss_pred Eec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258 826 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 826 ~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
+.+ ++-.+++|+ |.+|.+|...+...+..+.+|...|.|+.... ++. +++|+.|.+++||-. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 333577777 99999999999999999999999999999776 665 899999999999975 566777999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~ 983 (1113)
.|+++++-|++ .++|||.|++|++|.-.+ .++.+.+|.. .|+.+++-+++.++-++.||.|+.|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 899999999999998654 5777888875 899999999999999999999999999 78
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
+++.... +|..-|+++....++..+++++.|+++++|+.. ++...+. +| .-.|+. +.+.+ +| -++
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP---ttsiWs--a~~L~-Ng-DIv 274 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP---TTSIWS--AKVLL-NG-DIV 274 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC---ccceEE--EEEee-CC-CEE
Confidence 8887766 899999999999999999999999999999987 5665554 22 135665 33344 34 578
Q ss_pred EEeCCCcEEEEecc
Q 001258 1064 LGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1064 s~~~Dg~v~vW~~~ 1077 (1113)
+|++||.|+||...
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 88899999999876
No 124
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-20 Score=209.18 Aligned_cols=511 Identities=13% Similarity=0.150 Sum_probs=316.1
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC---CeEEEEe
Q 001258 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAY 439 (1113)
Q Consensus 363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~~ 439 (1113)
.-.||+|++++++ ..+..|.||...||+++. .+.+|..++..+.+.|.. .++.+++
T Consensus 21 ~avfSnD~k~l~~--~~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 21 PAVFSNDAKFLFL--CTGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccccCCcEEEE--eeCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEe
Confidence 4569999997544 357899999999999886 588999999999998854 4777999
Q ss_pred CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC----CCCeeEEEEecCCCc------------EEEEeCCC--Cce
Q 001258 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDKT------------IKVWDATN--GAK 501 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s~d~~------------i~iwd~~~--~~~ 501 (1113)
.||.|++||...+..++ ++..+ .++..+.+.| ... .+..+..|.. ++=..+.+ ...
T Consensus 80 l~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 99999999999998776 33322 2333333321 111 1111111211 11111111 001
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
...+.+|.. -.++..++. | .+.....+..+.+|+..... .. ... +-..-++.-.+.+.+
T Consensus 154 ~d~~~~~~~-~~~I~~~~~--g-e~~~i~~~~~~~~~~v~~~~-~~-~~~---------------~~~~~~Htf~~t~~~ 212 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNS--G-EFKGIVHMCKIHIYFVPKHT-KH-TSS---------------RDITVHHTFNITCVA 212 (792)
T ss_pred hhhhhhhcC-CccEEEcCC--c-eEEEEEEeeeEEEEEecccc-ee-ecc---------------chhhhhhcccceeEE
Confidence 111122322 223343333 2 23334445667888776533 11 000 001111222356778
Q ss_pred ecCCCCEEEEEecCCcEEEEECCC--CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
++|.+++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+ +
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L-- 288 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L-- 288 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c--
Confidence 888888999999999999997433 3322222345566789999999999999999999999999998873111 1
Q ss_pred ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1113)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1113)
T Consensus 289 -------------------------------------------------------------------------------- 288 (792)
T KOG1963|consen 289 -------------------------------------------------------------------------------- 288 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1113)
Q Consensus 740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 819 (1113)
|. -...|..+.++||+...+....|+.|.+-....-+... .+.-..+.+... ......
T Consensus 289 ------PR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tIsgi~~~~~~~------k~~~~~ 346 (792)
T KOG1963|consen 289 ------PR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TISGIKPPTPST------KTRPQS 346 (792)
T ss_pred ------cc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hccCccCCCccc------cccccc
Confidence 00 34678999999999999999999999887654211100 000000000000 001345
Q ss_pred CccEEEEecCCCEEE-EEeCCeEEEEECCCCceeeeec-----CC------CCCeeEEEEecCCCcEEEEEe--------
Q 001258 820 AVPCFALSKNDSYVM-SASGGKISLFNMMTFKTMATFM-----PP------PPAATFLAFHPQDNNIIAIGM-------- 879 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~-~~sdg~i~vwd~~~~~~~~~~~-----~~------~~~i~~l~~s~~d~~~la~g~-------- 879 (1113)
-.+.++++|.-+.++ -|..|.|.+||+-+-+.+..+. .+ .-.+++++.+. .|.+++++-
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNF 425 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhc
Confidence 567788999444444 4448999999998766654432 11 22477888888 688998864
Q ss_pred cCC--cEEEEEcccc----eeee-eecccccCeEEEEEcCC-C-CEEEEEeCCCcEEEEeCCCCccc-----cccccccC
Q 001258 880 DDS--SIQIYNVRVD----EVKS-KLKGHSKRITGLAFSHA-L-NVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIP 945 (1113)
Q Consensus 880 ~dg--~v~iwd~~~~----~~~~-~l~~h~~~V~~l~~s~d-~-~~L~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~ 945 (1113)
.|| .+++|-.... .+.. .-..|...+...++.+. . ..+++++.||.++||-+...+.. .+.+..+.
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence 333 5778876543 2222 23568887777776542 2 37999999999999998443221 12333333
Q ss_pred CCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc-ceeeccccCCCCCCeeEEEECCCC--CEEEEEeCCCcEEEE
Q 001258 946 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS--QLVYACFLDATVCVF 1022 (1113)
Q Consensus 946 ~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~Dg~v~vw 1022 (1113)
..|. .++..++|+.||..|+++.++.|.+||..+. +...... .-..++..++|.... ...+.....+...+|
T Consensus 506 sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W 580 (792)
T KOG1963|consen 506 SYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVW 580 (792)
T ss_pred cccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehH
Confidence 2233 4789999999999999999999999999883 3222221 113344445543321 123334457889999
Q ss_pred ecCCCceeeec
Q 001258 1023 SAANLKLRCRI 1033 (1113)
Q Consensus 1023 d~~~~~~~~~~ 1033 (1113)
++.+..+...+
T Consensus 581 Nll~~~l~w~~ 591 (792)
T KOG1963|consen 581 NLLSMSLIWNL 591 (792)
T ss_pred hhhhhheecch
Confidence 99988877633
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-20 Score=206.22 Aligned_cols=253 Identities=16% Similarity=0.241 Sum_probs=204.6
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
.|+..-+.++|.|+|. +|.+++.||.|++|+....+... . ++.-++..|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P-----------------~-ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP-----------------E-TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC-----------------c-hhhccCceeEEEee--cccce
Confidence 4888899999999999 58888899999999986652111 0 12226778888876 45599
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
++|+.+++|.+|....++.-. -+..-.-++.+++|+.+|+ ++|.||.|-.|++-++.+......+.+|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 2334556899999999999 89999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
.++| ++++|++.+-||.|++||+.++.....+..-...-... ....+..++|+|++..++..+.|
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-------------~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-------------LSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-------------ccceeeeeeecCCCCeEEeeccC
Confidence 9765 55799999999999999999876665544321100000 01234456777777789999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
+.|.+|+..+.+....+........+.++.|+|.|+|||+++.+|.|.|||..+
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999988887766655689999999999999999999999999986
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-22 Score=191.72 Aligned_cols=242 Identities=16% Similarity=0.244 Sum_probs=181.2
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-C
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D 431 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 431 (1113)
....|.+.|+++.+.+...+++++|+.||.|.+||++.........+ +.+ ..|. .....-.+|.-.|..+.|-| |
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeec
Confidence 34459999999999986544699999999999999986542111000 000 0111 01113568999999999999 7
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
...+.+++.|.+++|||..+-+..- .|+ -.+.|++-++||-.. .-++++|..|-.|++.|+.+|.+-+++.||.+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred CceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 7788899999999999999866443 332 456789999988654 34688888999999999999999999999999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|.++.|+|..+ -.|++|+.||.|++||++..
T Consensus 190 ~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------------------- 221 (397)
T KOG4283|consen 190 GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------------------- 221 (397)
T ss_pred ceEEEEeccCce-eEEEecCCCceEEEEEeecc-----------------------------------------------
Confidence 999999998765 68899999999999999852
Q ss_pred EEecCCcEEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
.|..++-|..+++....++ ...+.+.|+.++|+.++.++++.+.|..+++|+..+|...+
T Consensus 222 ----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 ----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ----cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 1223333433333222222 22345679999999999999999999999999998885433
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.1e-22 Score=220.76 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=218.4
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
.|....+.++|.|+|.+|++++.||.|++|+....... ...+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------------------P~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------------------PETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------------------Cchhh------ccCceeEEEee--
Confidence 47788999999999999999999999999986432110 11111 04556666665
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|+.|-.|++.++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 445888888 89999999988776555555567899999999 9999999999999999999999889999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcccee
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~ 986 (1113)
|.|+|.+.+||+.+.||.|++||++++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765432211111111111245678999999665555 89999999999999999
Q ss_pred eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258 987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
..+....|...+.++.|||+|+|||+++.||.|.|||+++.+. +.+ ...|. +.+|.| +++-+-...
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----------~~~Vc--~~aw~p-~~n~it~~~ 289 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----------KRAVC--CEAWKP-NANAITLIT 289 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----------cceeE--EEecCC-CCCeeEEEe
Confidence 8888877777799999999999999999999999999997222 111 12333 477877 444544444
Q ss_pred CCCcEEEE
Q 001258 1067 SDGGVHVF 1074 (1113)
Q Consensus 1067 ~Dg~v~vW 1074 (1113)
.-|..-+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 44554444
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=208.25 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=173.6
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC--
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-- 497 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-- 497 (1113)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 3489999999999999999999999999999999876 6789999999999999999 89999999999999874
Q ss_pred -------CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 498 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 498 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
+-++++.|..|.-+|+.+...+.+...+++|+|.|.++++||+..+..+.++..+ ..+.++++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lD-------- 226 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALD-------- 226 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEc--------
Confidence 3467789999999999999877756679999999999999999987655544332 234444444
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCC----------------CceEEEEccCCCCCCcCeEEECCCCCEEE
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 634 (1113)
|.+..+++|+.+|.|.+.++.. +..+..+.+|.....|+|++++-||.+|+
T Consensus 227 -------------pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 227 -------------PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -------------ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 4445677777777777766543 22445555665545899999999999999
Q ss_pred EEECCCcEEEEEcCCCccceecccc
Q 001258 635 VSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
+|+.||.+++||+.+. ++++.+..
T Consensus 294 SGd~dg~VcvWdi~S~-Q~iRtl~~ 317 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK-QCIRTLQT 317 (476)
T ss_pred eeCCCCCEEEEecchH-HHHHHHhh
Confidence 9999999999999887 77777654
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.7e-22 Score=191.76 Aligned_cols=240 Identities=19% Similarity=0.196 Sum_probs=185.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
..+.|..|.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4688999999999996 5566799999999998764432 345888999999986 66889
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+...+..++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 69999999999999998766666655 334788776
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
. .|+.|+.|+.|..+.+||+++......... -...+.++++ -|++.-+++++-
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~---------------------~pn~eGy~~sSi 197 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL---------------------VPNGEGYVVSSI 197 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE---------------------ecCCCceEEEee
Confidence 3 336899999999999999998665542211 1223444444 444446888999
Q ss_pred CCcEEEEECCCC----ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 595 DFSIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 595 dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
||.|.+=.++.. +....++.|.. .-+|++++|+|--..|++|+.||.|.+||+.+.
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 999888666554 23333443321 236899999999889999999999999998776
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=6.4e-23 Score=210.37 Aligned_cols=236 Identities=19% Similarity=0.330 Sum_probs=184.9
Q ss_pred CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
.+.-.++.+|.++-..++|++...-.|++|+.|++|++||+....... ........+.+|+..|..++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~ 234 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVA 234 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhh
Confidence 344567888999999999999888779999999999999997654320 01122336899999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CceeeEe
Q 001258 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIF 505 (1113)
Q Consensus 428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~ 505 (1113)
|++ +..++++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .++++++
T Consensus 235 ~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 235 WHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred ccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceec
Confidence 999 7778999999999999999964 33344467899999999999999886 899999999999999997 4578899
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
.+|...|..+.|+|..+ ..|++++.|+.+.+||+........-..... .|.+-....|.+...+.-+.|+|.
T Consensus 313 e~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~d-------gppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAED-------GPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cCCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhcc-------CCcceeEEecCcccccccccCCCC
Confidence 99999999999999766 6999999999999999986554432111111 111112334444556777888888
Q ss_pred CCEEE-EEecCCcEEEEECCC
Q 001258 586 KNRFL-AAGDDFSIKFWDMDS 605 (1113)
Q Consensus 586 ~~~l~-~~~~dg~i~iwd~~~ 605 (1113)
..+++ +++.|+.+.||.+..
T Consensus 385 ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCeEEEEecCCceEEEeeccc
Confidence 87655 578999999999853
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1e-22 Score=209.27 Aligned_cols=281 Identities=12% Similarity=0.162 Sum_probs=223.7
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc-CCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
|..-|.+++++...+.+.+++ .|.|+|||+..... .+... +........|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq---------------------Ldcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ---------------------LDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccc---------------------ccccCcccceeeeEecC
Confidence 778888999999988887766 46899999875321 11110 11122567799999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1113)
||+.|++|+ -.++.|||+....... .+......+.+++.+| |.++.++++.||.|.|||+.+...++.|.||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 6889999998654433 3333345678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccc
Q 001258 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE 984 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~ 984 (1113)
.||.+++||..|-||+-|.+|+-||+..+.+... ... ...|.++.++|.+.+++++ .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF----~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDF----SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhh----hhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999999999999999999998654321 111 1478999999999999997 67788888776554
Q ss_pred eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
.. ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.. ..+.|.+ +-.+. |.++++|
T Consensus 626 ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------E~SsVls--CDIS~-ddkyIVT 691 (705)
T KOG0639|consen 626 KY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLS--CDISF-DDKYIVT 691 (705)
T ss_pred ce---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------ccCccee--eeecc-CceEEEe
Confidence 32 234679999999999999999999999999999999998886543 2344553 44444 6789999
Q ss_pred EeCCCcEEEEec
Q 001258 1065 GLSDGGVHVFEP 1076 (1113)
Q Consensus 1065 ~~~Dg~v~vW~~ 1076 (1113)
|+.|..--|+.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999988777765
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=207.02 Aligned_cols=296 Identities=17% Similarity=0.266 Sum_probs=216.8
Q ss_pred EEecCC-CcEEEEeCCCCceeeEeecc-CcCEEEEeeeecCCceEEEEEec-CCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 483 ITCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 483 ~s~s~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
.+++.| .++.+||+++|....++++. ...-.++.. -++.+++++.. ...|.+|.+.............+.+.++
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 344444 45999999999999888765 222222221 11246666654 4578999887544443333333445555
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 639 (1113)
+-+|+| .+|+.|+..|.|++|.+.+|..+..+..| ...|+|+.|+.||.++++|+.|
T Consensus 88 ~s~n~G---------------------~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 88 ASSNLG---------------------YFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ecCCCc---------------------eEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCC
Confidence 555554 47888889999999999999999988655 6689999999999999999999
Q ss_pred CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1113)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1113)
|.|.+|.+.+-. .....|.
T Consensus 145 g~V~vW~l~~lv---~a~~~~~---------------------------------------------------------- 163 (476)
T KOG0646|consen 145 GAVLVWLLTDLV---SADNDHS---------------------------------------------------------- 163 (476)
T ss_pred ccEEEEEEEeec---ccccCCC----------------------------------------------------------
Confidence 999999875431 1111000
Q ss_pred ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCC--CceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1113)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1113)
-.-++.| ..|.-.|+++...+. ..++++++.|.++++||+..
T Consensus 164 ---~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------- 207 (476)
T KOG0646|consen 164 ---VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------- 207 (476)
T ss_pred ---ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence 0111222 237778888887765 35699999999999998763
Q ss_pred eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc----------------eeeeecCCCC
Q 001258 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP 860 (1113)
Q Consensus 798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~----------------~~~~~~~~~~ 860 (1113)
|.++.... ....+.+++++|-++.+.+|+ +|.|.+.++.... .+..+.+|..
T Consensus 208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 33332222 567899999999999999998 8999988875322 3455778887
Q ss_pred --CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC
Q 001258 861 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1113)
Q Consensus 861 --~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1113)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus 277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 899999999 9999999999999999999999999999878899999999654
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=214.65 Aligned_cols=435 Identities=15% Similarity=0.151 Sum_probs=274.1
Q ss_pred EEEEcC---CCCeEEEEeCCCeEEEEEccCCcee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 425 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 425 ~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
+..|++ ....||.+..||.|.++|......- +++..+..|...|..+.|.| |+. .|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 4557899999999999998754211 22345678999999999999 443 799999999999999999
Q ss_pred CceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258 499 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1113)
Q Consensus 499 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 576 (1113)
++++.. +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +.. ...+++..|....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~------------~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEE------------FDNRIYGRHNTAP 197 (720)
T ss_pred ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHH------------HhhhhhccccCCC
Confidence 998876 899999999999987654 689999999999999997533110 000 0000000000000
Q ss_pred eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCe---EEECCCCCEEEEEEC-CCcEEEEEcCCCcc
Q 001258 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR 652 (1113)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~ 652 (1113)
.|.. . ....++-|-.. ...|.+ +.+..|...||+++. |+.|++||+.....
T Consensus 198 ------tpsk--p----~~kr~~k~kA~-------------s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 198 ------TPSK--P----LKKRIRKWKAA-------------SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred ------CCCc--h----hhccccccccc-------------cCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 0000 0 00111112211 122333 556678888998887 99999999987632
Q ss_pred ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1113)
..+.-..... .+.
T Consensus 253 ~~r~ep~~~~-------------------------------------------------------------------~~~ 265 (720)
T KOG0321|consen 253 AYRQEPRGSD-------------------------------------------------------------------KYP 265 (720)
T ss_pred ccccCCCccc-------------------------------------------------------------------Ccc
Confidence 2211100000 000
Q ss_pred CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1113)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 812 (1113)
. . ......+.++.....|.++++.+.|+.|+.|++......+.+... |..
T Consensus 266 t------------~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~----- 315 (720)
T KOG0321|consen 266 T------------H-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL----- 315 (720)
T ss_pred C------------c-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc-----
Confidence 0 0 012346778888889999999999999999998865554433221 111
Q ss_pred CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
....-..-..+|++.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|..-.-++++++|..++||++.
T Consensus 316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 011111235689999999998 99999999987654 456789999999999998555667778999999999996
Q ss_pred cce--------------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258 891 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1113)
Q Consensus 891 ~~~--------------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1113)
.+- ....+++|...+..+.++-.+.+-.. ..+.+++|..- .
T Consensus 392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~p--R~~~~r~~ssP-----------------------~ 446 (720)
T KOG0321|consen 392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDP--REGMNRISSSP-----------------------V 446 (720)
T ss_pred Cchhhccccccchhhhhhhhhhhccccccccccccccccccch--hhhccccccCc-----------------------c
Confidence 532 22334556555555555433322221 13334444432 2
Q ss_pred eEEEccCCcEEEEE-----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC-----------CCcEE
Q 001258 957 RVQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1020 (1113)
Q Consensus 957 ~~~~spdg~~l~~~-----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----------Dg~v~ 1020 (1113)
.++..|++.-...+ ..-.|...+....+........+|-..|....+++.+..+++++. ++.+.
T Consensus 447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~ 526 (720)
T KOG0321|consen 447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN 526 (720)
T ss_pred chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence 33444444433331 112344555444444433333456667777777777778888887 88888
Q ss_pred EEecCC
Q 001258 1021 VFSAAN 1026 (1113)
Q Consensus 1021 vwd~~~ 1026 (1113)
+|....
T Consensus 527 s~~s~l 532 (720)
T KOG0321|consen 527 SPNSSL 532 (720)
T ss_pred cccccc
Confidence 887654
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.2e-21 Score=189.05 Aligned_cols=283 Identities=15% Similarity=0.189 Sum_probs=209.5
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
...+.|+.|.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 346789999999999999999999999999999875432 235899999999998765 8999999999999998
Q ss_pred CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
++.... +..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~------------------ 141 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM------------------ 141 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE------------------
Confidence 887644 45599999999987544 479999999999999998633333322222 33333
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+-.++.|++|+.+..|.+||+++...........-.-.++|+++.|++.-.++++-||.|.+=.+... +.....
T Consensus 142 -----~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk 215 (323)
T KOG1036|consen 142 -----DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK 215 (323)
T ss_pred -----eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence 33445699999999999999998665443322222345789999998888999999999877544332 000000
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1113)
+ . +|.+
T Consensus 216 k---y-----------aFkC------------------------------------------------------------ 221 (323)
T KOG1036|consen 216 K---Y-----------AFKC------------------------------------------------------------ 221 (323)
T ss_pred c---e-----------eEEe------------------------------------------------------------
Confidence 0 0 0000
Q ss_pred CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 817 (1113)
| .-..++ .- .
T Consensus 222 ------------H-------r~~~~~----------~~-----------------------------------------~ 231 (323)
T KOG1036|consen 222 ------------H-------RLSEKD----------TE-----------------------------------------I 231 (323)
T ss_pred ------------e-------ecccCC----------ce-----------------------------------------E
Confidence 0 000001 00 1
Q ss_pred CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec
Q 001258 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~ 880 (1113)
-.+|.+++|+|-...+|+|+ ||.|.+||+.+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 23578899999999999998 99999999999999988887778899999999 8999999873
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.2e-22 Score=191.42 Aligned_cols=201 Identities=18% Similarity=0.288 Sum_probs=159.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1113)
Q Consensus 423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 502 (1113)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866333 6889999999999999999 7999999999999999999999
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 582 (1113)
+.+. ..++|+.+.|+|......+++- .+..-.+-++..+. -..+..++++.... .-....|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9887 7789999999998765444443 33333333333211 12223333333211 1112357
Q ss_pred cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++|+.-+.|+.||.|++.
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 8889999999999999999999999998887553 2468899999999999999999999999875
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=4.6e-21 Score=203.41 Aligned_cols=456 Identities=12% Similarity=0.151 Sum_probs=284.5
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
.|..++|-|||..|++++ +..+.|||...|..+. .+++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 789999999999866654 5689999999998876 5899999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeee
Q 001258 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1113)
.|..|.||+-+-...++ -.|.+.|.|+.|+|-.. .++|++-. ..-+|........+ |...+.+++.+.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh----hhhheeEEEeee
Confidence 99999999876433332 26999999999999998 68888753 46688865443322 333333333334
Q ss_pred cCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1113)
Q Consensus 520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 596 (1113)
..||.+++.|-.+|+|.+-+-. ++....+.. ...+|.+++|+|... .| ....+++.....
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 5788999999999999887543 333333333 445788888887643 01 012466677778
Q ss_pred cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258 597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1113)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1113)
++.+|.+. |+.+..-..-+ -...|+.+.++|.++..|+.|+.+.+|-- .| -.+.++
T Consensus 204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~G-vrLGTv------------------- 259 (1081)
T KOG1538|consen 204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DG-VRLGTV------------------- 259 (1081)
T ss_pred eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cC-eEEeec-------------------
Confidence 88888874 45444222111 13468999999999999999999999842 22 011000
Q ss_pred cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1113)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1113)
......|..
T Consensus 260 -----------------------------------------------------------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 260 -----------------------------------------------------------------------GEQDSWIWT 268 (1081)
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 003457888
Q ss_pred EEEeCCCceEEEeecCCeEEEEEccccccC---------------------CCC------------------ceee---e
Q 001258 757 LIFTNSGNAILALASNAIHLLWKWQRTERN---------------------SSG------------------KATA---S 794 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~---------------------~~~------------------~~~~---~ 794 (1113)
++..|+++.++.|+.||++..|++...+.. ..+ ..++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 999999999999999999999887543100 000 0000 0
Q ss_pred ecCeecCCCCccccccccCCCCCCCCccEEEEe---cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEE--ec
Q 001258 795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP 869 (1113)
Q Consensus 795 ~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s---~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~ 869 (1113)
..+.+|...++.......+- ...-+..+.+| -.+..++.+.+..+.-+|...-+. +... -.+-|.-+.. -|
T Consensus 349 eki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP 424 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGP 424 (1081)
T ss_pred ceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCC
Confidence 02233433333221110000 00000111111 133445555555666666542111 0000 0001111111 12
Q ss_pred CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001258 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1113)
Q Consensus 870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1113)
.+..-|+.|..||.|.-.=+.+.-++ -+......|.|+..+...+.||+....++..++|+.+++.. .+.+
T Consensus 425 ~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL----~QEp---- 495 (1081)
T KOG1538|consen 425 PGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL----FQEP---- 495 (1081)
T ss_pred CCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE----eecC----
Confidence 24456788988887654333432222 22334567999999999999999999999999999996542 1111
Q ss_pred CCCCCCceEEEccCCc-EEEEEcCCeEEE
Q 001258 950 PTAQSDTRVQFHQDQI-HFLVVHETQLAI 977 (1113)
Q Consensus 950 ~~~~~i~~~~~spdg~-~l~~~~d~~v~v 977 (1113)
.+.+++|+.... +++.+..|.+.|
T Consensus 496 ----g~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 496 ----GANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ----CCceEEeeccccceEEEecCCceEE
Confidence 467888887544 333354455443
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=189.59 Aligned_cols=267 Identities=13% Similarity=0.211 Sum_probs=191.1
Q ss_pred CCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1113)
Q Consensus 346 ~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 425 (1113)
+.|.++..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-. ++.+|..+|.+
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 34667778888777 899999999995 9999999999999998865322 68999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
++||+||+.|+++|.|..|++||+..|.+++.+ + ...+|+.+.|.|-.....++ .=.+..-.+-++..+.. ..+
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri---r-f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h-~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI---R-FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKH-SVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE---E-ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCce-eec
Confidence 999999999999999999999999999977643 2 46799999999987763444 33444455555544221 112
Q ss_pred ec-cCcC--EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEE
Q 001258 506 EG-HEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 506 ~~-h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.. ..+. +.+-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g---------------- 208 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG---------------- 208 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC----------------
Confidence 11 1111 111111245677999999999999999999887776655444 445555555555
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCC-------ceE--EEEccCCCCCCcCeEEECCCCCEEEEEEC-CCcEEEEEcCCCc
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSV-------QLL--TSIDADGGLPASPRIRFNKDGCLLAVSTN-DNGIKILATSDGI 651 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~ 651 (1113)
..++.-+.|..|+.|++..- +.. +.+..--....-.+++|+.+|.|++.++. .+.++||....|
T Consensus 209 -----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G- 282 (405)
T KOG1273|consen 209 -----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG- 282 (405)
T ss_pred -----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-
Confidence 47999999999999998631 111 11110001122358999999999988764 467999998888
Q ss_pred cceecccccc
Q 001258 652 RLLRTFENLA 661 (1113)
Q Consensus 652 ~~~~~~~~~~ 661 (1113)
.+++.+.|..
T Consensus 283 sLVKILhG~k 292 (405)
T KOG1273|consen 283 SLVKILHGTK 292 (405)
T ss_pred ceeeeecCCc
Confidence 7777776543
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=197.97 Aligned_cols=249 Identities=13% Similarity=0.196 Sum_probs=194.2
Q ss_pred ccCceEEEEEeCCCc-eEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 750 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
...+|.+++|.|+|. .+++++.-...+.||+.......... +.+ -....+....+++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecC
Confidence 346789999999999 78888888899999886543321110 011 1234577889999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc-CeE
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 906 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~ 906 (1113)
++++|+..+ .|.|.+....+++.+..+. ..+.|..++|+. +++.|.+.+.+|.|.+||+....+++.+....+ .=+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999988 8999999999999988887 466799999998 888888888999999999999999888864221 236
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE---cCCeEEEEeCCc
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 982 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~---~d~~v~v~d~~~ 982 (1113)
++|.|+++.+||+||..|.|.|||.++.-... ..++.....-. ..|+.+.|++|++.||++ ....+++..+..
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78888999999999999999999976522111 11111111111 378999999999999984 456899999999
Q ss_pred cceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258 983 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 983 ~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
......|.... --+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888887532 25679999999999999999999999999874
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.6e-20 Score=204.13 Aligned_cols=205 Identities=18% Similarity=0.212 Sum_probs=149.1
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-cEEEEEcccceeeeeec
Q 001258 823 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~ 899 (1113)
.++++|+++.++++. ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 456777777665443 67888899888777666653 23468899999 888998888765 57788998887765543
Q ss_pred ccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEE
Q 001258 900 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 976 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~ 976 (1113)
. ...+.+++|++++++|+.+ ..++.|++||+.+++.......... +..........++|+|+++++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-GVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-ccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 3356789999999988644 4699999999998754322111111 10000113456889999998655 3567899
Q ss_pred EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE-eCCCcEEEEecCCCceeeecC
Q 001258 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+||+.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988876543 24578999999999999886 468999999999999988876
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.7e-20 Score=203.18 Aligned_cols=294 Identities=13% Similarity=0.140 Sum_probs=204.0
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999987665 455444 4778999999984 346778899999999999988877765544
Q ss_pred EEEEeeeecCCceEEE-EEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 512 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
+..++|++ +++.++ +++.++.|++||+.+......+.. ...+.. ++++|++.+++
T Consensus 75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~---------------------~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEG---------------------MAVSPDGKIVV 130 (300)
T ss_pred ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcce---------------------EEECCCCCEEE
Confidence 45666654 445554 556689999999987544433321 112233 45555555777
Q ss_pred EEecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEcCCCccceeccccccccccccC
Q 001258 591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1113)
Q Consensus 591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1113)
++..++ .+.+||..+++......... ...+++|+|++++++++ ..++.|++||+.++ +....+..+
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~-------- 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE-------- 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence 777654 57788998887766553322 35789999999988655 45899999998766 222111000
Q ss_pred CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1113)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1113)
T Consensus 199 -------------------------------------------------------------------------------- 198 (300)
T TIGR03866 199 -------------------------------------------------------------------------------- 198 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
..+. . ........++|+|
T Consensus 199 ------------~~~~-------~-------------------------------------------~~~~~~~~i~~s~ 216 (300)
T TIGR03866 199 ------------IPGV-------H-------------------------------------------PEAVQPVGIKLTK 216 (300)
T ss_pred ------------cccc-------c-------------------------------------------cccCCccceEECC
Confidence 0000 0 0011223577888
Q ss_pred CCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCCcEEEEEcccceeeeeecccccCe
Q 001258 829 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1113)
Q Consensus 829 ~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1113)
++++++++. ++.|.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755542 6789999998887766553 345689999999 88888776 46899999999999999888755 556
Q ss_pred EEEEEcC
Q 001258 906 TGLAFSH 912 (1113)
Q Consensus 906 ~~l~~s~ 912 (1113)
++++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.6e-21 Score=184.39 Aligned_cols=305 Identities=16% Similarity=0.245 Sum_probs=213.5
Q ss_pred cccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceee------------eeeeeecccCCeeEEEEcCCCCeeE
Q 001258 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR------------QHLEIDAHVGGVNDIAFSHPNKQLC 481 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~------------~~~~l~~h~~~V~~v~~s~~~~~~~ 481 (1113)
+...|.+.|+.+...+ .|+|+++|+.||.|.|||++.....+ ....-.+|.-.|.++.|-|-+.. +
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-m 116 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-M 116 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-e
Confidence 4567999999999998 79999999999999999998644111 01112478889999999997665 7
Q ss_pred EEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEE
Q 001258 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1113)
Q Consensus 482 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 561 (1113)
|.++|.|.+++|||..+-+....|+ ..+.|.+-+++|-....
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sH------------------------------------- 158 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSH------------------------------------- 158 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcc-------------------------------------
Confidence 9999999999999998887766665 44555555544321100
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCC
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDN 640 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 640 (1113)
..+++|..+-.|++.|+.+|..-+.+.+| ...|.++.|+|... .|++|+.||
T Consensus 159 -------------------------cLiA~gtr~~~VrLCDi~SGs~sH~LsGH--r~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 159 -------------------------CLIAAGTRDVQVRLCDIASGSFSHTLSGH--RDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred -------------------------eEEEEecCCCcEEEEeccCCcceeeeccc--cCceEEEEeccCceeEEEecCCCc
Confidence 13677778888999999999999999877 45899999999655 578999999
Q ss_pred cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeec
Q 001258 641 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 720 (1113)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1113)
.|++||+.....++..+..|....
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~-------------------------------------------------------- 235 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKR-------------------------------------------------------- 235 (397)
T ss_pred eEEEEEeecccceeEEeecccCcc--------------------------------------------------------
Confidence 999999875534444444332100
Q ss_pred cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeec
Q 001258 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 800 (1113)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw 800 (1113)
+...+ ...
T Consensus 236 ----------------~p~~~----~n~---------------------------------------------------- 243 (397)
T KOG4283|consen 236 ----------------PPILK----TNT---------------------------------------------------- 243 (397)
T ss_pred ----------------Ccccc----ccc----------------------------------------------------
Confidence 00000 001
Q ss_pred CCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec---CCCC----CeeEEEEecCCC
Q 001258 801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM---PPPP----AATFLAFHPQDN 872 (1113)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~~~----~i~~l~~s~~d~ 872 (1113)
.|.+.+..+||+.++.++++.+ |..+++|+...|+....-- .|.. .+. +. +. +.
T Consensus 244 ---------------ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s 305 (397)
T KOG4283|consen 244 ---------------AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SM-DS 305 (397)
T ss_pred ---------------cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ec-cc
Confidence 1555555666666666666555 6666666665544321110 0110 111 11 22 33
Q ss_pred cEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
..++---.++.+.++++-++..+..+..|-..|.+.++-|+-+.+.+++.|+.+..|..
T Consensus 306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 34444445689999999999999999999999999999999999999999999999986
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.9e-21 Score=201.61 Aligned_cols=313 Identities=16% Similarity=0.208 Sum_probs=227.0
Q ss_pred eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
..+.||++.|.+|...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|++.++..+|+.+-... +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 35789999999999999999 89999999999999999999999887 56789999999998866666655444 5554
Q ss_pred EcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE----ecCCcEEEEECCCCce----EE
Q 001258 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT 610 (1113)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~~ 610 (1113)
+..-+..+..... ...|.++ ..++.+..|.-..... +.
T Consensus 470 np~~G~~~e~~~t----------------------------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~ 515 (733)
T KOG0650|consen 470 NPIFGDRLEVGPT----------------------------------KELLASAPNESEPDAAVVTWSRASLDELEKGVC 515 (733)
T ss_pred Cccccchhhhcch----------------------------------hhhhhcCCCccCCcccceeechhhhhhhccceE
Confidence 4332211110000 0012221 2345677776542111 11
Q ss_pred EEccCCCCCCcCeEEECCCCCEEEEEECCC---cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhc
Q 001258 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687 (1113)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1113)
..- .+...|..+.|+..|.||++...++ .|.|.++.... ... .|
T Consensus 516 ~~I--~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~------------------PF------------ 562 (733)
T KOG0650|consen 516 IVI--KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS------------------PF------------ 562 (733)
T ss_pred EEE--ecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC------------------ch------------
Confidence 221 2245799999999999999886643 35555543321 000 00
Q ss_pred ccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEE
Q 001258 688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 767 (1113)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 767 (1113)
....+.|.++.|+|...+++
T Consensus 563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf 582 (733)
T KOG0650|consen 563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF 582 (733)
T ss_pred ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence 11456789999999999888
Q ss_pred EeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEEC
Q 001258 768 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 846 (1113)
Q Consensus 768 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~ 846 (1113)
+++.. .|+|||+. .+.++...++ ....|..++++|.|..|+.|+ |+.+..||+
T Consensus 583 VaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 583 VATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred EEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence 87765 67777765 3333333233 467789999999999999998 999999999
Q ss_pred CC-CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc------c---eeeeeecccccC----eEEEEEcC
Q 001258 847 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAFSH 912 (1113)
Q Consensus 847 ~~-~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~------~---~~~~~l~~h~~~----V~~l~~s~ 912 (1113)
+- .+..+++..|...+++|+|++ .-.++++|+.||++.|+.-.- . -.+..+++|... |..+.|+|
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence 84 456788899999999999999 788999999999999986421 1 245778899876 89999999
Q ss_pred CCCEEEEEeCCCcEEEE
Q 001258 913 ALNVLVSSGADSQLCVW 929 (1113)
Q Consensus 913 d~~~L~s~s~D~~v~iw 929 (1113)
...+|++++.||+|++|
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999998
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.2e-21 Score=195.11 Aligned_cols=245 Identities=16% Similarity=0.262 Sum_probs=188.3
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-eEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFG 436 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la 436 (1113)
.+.|++|.|+|..+ +|.+++.||+++||.+.....-. .+. +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~---------------lqS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPK---------------LQS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChh---------------hee--eeeccCccceeeecCCCceEEE
Confidence 57999999999999 68899999999999987432111 111 122244899999999999 899
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
+++.......||+.+.+.. ++..+.++. ..+.....+++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998754 333455555 3677889999999 89999999999999999999999888 56789999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC-ceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
+|+ .++..|++++.+|.|.+||++...++..+...+. .-++ +|.++++.+|++|+.
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts---------------------~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS---------------------LCISLNGSYLATGSD 407 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee---------------------eeecCCCceEEeccC
Confidence 986 5668899999999999999998876666554332 2233 444555558999999
Q ss_pred CCcEEEEECCC------CceEEEEccCCCCCCcCeEEECCCCCEEEEEEC--CCcEEEEEcCC
Q 001258 595 DFSIKFWDMDS------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSD 649 (1113)
Q Consensus 595 dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~ 649 (1113)
.|.|.|||.++ .+++..+.. -...|+++.|++|+++|+.++. ...+++..+.+
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 99999999654 234444332 2457899999999999998876 44566665543
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.5e-21 Score=202.48 Aligned_cols=291 Identities=13% Similarity=0.116 Sum_probs=208.3
Q ss_pred CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeE
Q 001258 763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 841 (1113)
Q Consensus 763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i 841 (1113)
...|+.+.++|.|.++|.....+.+ +..++.. . ..|...|..+.|-|....|++++ |.++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcch---------------hhhhhcc--c--ccccceeEeeccCCCceeEEEccCCcee
Confidence 3456677778999999876544321 1111111 1 12899999999999666778877 8999
Q ss_pred EEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce--------------------------
Q 001258 842 SLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-------------------------- 893 (1113)
Q Consensus 842 ~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-------------------------- 893 (1113)
++||+++.++... +.+|...+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999888776 889999999999999889999999999999999985211
Q ss_pred -eeeeecccccCeEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccccccCCCCCC--CCCCCceEEEccCCc
Q 001258 894 -VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPTGRTP--TAQSDTRVQFHQDQI 965 (1113)
Q Consensus 894 -~~~~l~~h~~~V~~---l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~-~~~~~~~~~~~~--~~~~i~~~~~spdg~ 965 (1113)
.+....+|...|.+ +.+..|...||++|. |+.|++||+......- ........-+.. ....+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 11222345556665 566678899999998 9999999998754321 111222111111 113456666777778
Q ss_pred EEEE-EcCCeEEEEeCCccceeeccccCCC--CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC
Q 001258 966 HFLV-VHETQLAIFETTKLECVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus 966 ~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
+|.+ +.|+.|.+|++.+...-......++ ...-..-..+||+.+|++|+.|..+++|.+.+-+.--.+ -.|
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------l~G 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------LLG 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh------hhC
Confidence 8877 7999999999987654333332232 222233456999999999999999999999876554222 238
Q ss_pred cccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1043 VSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|.-+|+. +.|.|.+-.-++++++|.++++|++.++-
T Consensus 359 ht~eVt~--V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 359 HTREVTT--VRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cceEEEE--EeeccccCCCceeeccCcceEEEeccCch
Confidence 9899986 67777655678888999999999997665
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=197.35 Aligned_cols=440 Identities=14% Similarity=0.193 Sum_probs=269.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
.|..++|-|||..|+.+..+ .+.|||...|..+. ++++|.+.|+|++|+.||+ .+++|+.|+.|.+|+..-. -
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klE-G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLE-G 86 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccccc-c
Confidence 89999999999999888644 59999999999777 8999999999999999999 7999999999999985422 2
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+..+ .|.+.|.|+.|+|-. ..|++++.. ..-+|...... +........+.+.+
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~-----------------------V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKS-----------------------VSKHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhh-----------------------HHhhhhheeEEEee
Confidence 2222 399999999988765 578887653 35567544311 11111112344455
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-CCCCCCcCeEEECCCCC-----EEEEEECCCcEEEEEcCCCcccee
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGC-----LLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
|..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|... .+++.....++.++.+... .+
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~I- 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QI- 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--ee-
Confidence 5566668999999999999875 4444444433 33456899999999642 3444444444444433211 00
Q ss_pred ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1113)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1113)
T Consensus 216 -------------------------------------------------------------------------------- 215 (1081)
T KOG1538|consen 216 -------------------------------------------------------------------------------- 215 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1113)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 815 (1113)
.+-+.+ .-.-.++.+.++|.+++.|+.|+.+.+|.-. |..+.. +.
T Consensus 216 --gk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-vg-- 260 (1081)
T KOG1538|consen 216 --GKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-VG-- 260 (1081)
T ss_pred --cccccC-------CCCchhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-cc--
Confidence 001111 1123578888999999999999999988643 111111 11
Q ss_pred CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceee------------------ee-cCCCCCeeE------EEEec
Q 001258 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA------------------TF-MPPPPAATF------LAFHP 869 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~------------------~~-~~~~~~i~~------l~~s~ 869 (1113)
.....|..++..|++++++.|. ||+|.-|++....... .+ .+....|.| ++.-
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY- 339 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY- 339 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-
Confidence 1577899999999999999999 9999999975322110 00 111111211 2221
Q ss_pred CCCcEEEEEecCCcEEEEEcccceeeeee-cccccCeEEEEEc---CCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 001258 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP 945 (1113)
Q Consensus 870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s---~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 945 (1113)
.+.||+--.+ .|.||.+.+++...-. +-...-+..+.+| -.++.++. +.+..+.-+|+..-....+.....
T Consensus 340 --rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~S~- 414 (1081)
T KOG1538|consen 340 --RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQMESL- 414 (1081)
T ss_pred --hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHHHH-
Confidence 2345655444 6888888765422110 0000011111111 12344443 356667778876643332211111
Q ss_pred CCCCCCCCCCceEEE--ccCC-cEEEEE-cCCeE-EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258 946 TGRTPTAQSDTRVQF--HQDQ-IHFLVV-HETQL-AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus 946 ~~~~~~~~~i~~~~~--spdg-~~l~~~-~d~~v-~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
|..+.. -|-| .-|++| .+|.| +||=-+....+.. .....|.|+.++...+.||+..+.++..
T Consensus 415 ---------iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~----~~~tAvrClDINA~R~kLAvVDD~~~c~ 481 (1081)
T KOG1538|consen 415 ---------IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLL----KQATAVRCLDINASRKKLAVVDDNDTCL 481 (1081)
T ss_pred ---------HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhhee----cccceeEEeeccCCcceEEEEccCCeEE
Confidence 111111 1222 234443 56553 4443222222111 2266899999999999999999999999
Q ss_pred EEecCCCceeeec
Q 001258 1021 VFSAANLKLRCRI 1033 (1113)
Q Consensus 1021 vwd~~~~~~~~~~ 1033 (1113)
++|+.+++.+.+-
T Consensus 482 v~DI~t~elL~QE 494 (1081)
T KOG1538|consen 482 VYDIDTKELLFQE 494 (1081)
T ss_pred EEEccCCceEeec
Confidence 9999999988653
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5e-20 Score=178.94 Aligned_cols=268 Identities=19% Similarity=0.383 Sum_probs=188.0
Q ss_pred ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1113)
Q Consensus 462 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 537 (1113)
.+|.+-|.++.|.+.|+ .+++|+.|++|+|||..+. .+...++.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 6999999999999997543 45567789999999999999888999999999999999
Q ss_pred EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1113)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1113)
|.-.. .....++ +-|. ...++. ..
T Consensus 88 WEE~~----~~~~~~~---------------------------------------------~~Wv-----~~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAHG---------------------------------------------RRWV-----RRTTLV--DS 111 (361)
T ss_pred eeecc----ccccccc---------------------------------------------ceeE-----EEEEee--cC
Confidence 95321 1111111 1111 111121 22
Q ss_pred CCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258 618 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1113)
Q Consensus 618 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1113)
...|+.+.|.| -|-.|++++.||.+|||+.-+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 34688999998 57789999999999999865441
Q ss_pred ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1113)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 775 (1113)
.++-|.+.. ..+.+..+...
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~pp~~-------------------------- 167 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVIDPPGK-------------------------- 167 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccCCccc--------------------------
Confidence 111222211 00000000001
Q ss_pred EEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC---CCEEEEEeCC------eEEEEEC
Q 001258 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM 846 (1113)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~sdg------~i~vwd~ 846 (1113)
+.....|+.|+|. ..+||+|+|. .+.||..
T Consensus 168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 2222333444332 2356666643 6777776
Q ss_pred CCC----ceeeeecCCCCCeeEEEEecCCC---cEEEEEecCCcEEEEEccc--------------------ceeeeeec
Q 001258 847 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRV--------------------DEVKSKLK 899 (1113)
Q Consensus 847 ~~~----~~~~~~~~~~~~i~~l~~s~~d~---~~la~g~~dg~v~iwd~~~--------------------~~~~~~l~ 899 (1113)
... ..+.++.+|..+|+.++|.|.-| .+||+++.|| |+||++.. -+.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 532 34556788999999999999544 5899999999 99999873 13456678
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+|.+.|+.+.|.-.|..|+|.|.||+|++|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997643
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=2e-20 Score=186.57 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=197.1
Q ss_pred CCcceeEeccCCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceE
Q 001258 347 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1113)
Q Consensus 347 ~~~~~~~~~~h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 424 (1113)
.|......+.|.+.|+.+.-++-|+ .++|+=+..|.|.|||+...-.. ....+.+.+ ....+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 4555667778999999999998864 35666677899999998542111 000000111 11112235789999999
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---c
Q 001258 425 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 500 (1113)
Q Consensus 425 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~ 500 (1113)
.++||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|+|||.||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 3335788888888999999988755444467789999999999999887 8999999999999999988 3
Q ss_pred eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
++.+ +.|.+.|+.+.|+... .+|++|+.||+++|||++.. .++..+..|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 3433 7899999999987654 49999999999999999864 34557788888888888887654
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECCCCce----------------EEEEccCCCCCCcCeEEECCC-CCEEEEEECCC
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 640 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 640 (1113)
..+++++.|.+|.+||+....- -+.+-.|.+...+..+.|++. ..++++.+.||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 2488899999999999853221 112223444567888999985 34666666665
Q ss_pred c
Q 001258 641 G 641 (1113)
Q Consensus 641 ~ 641 (1113)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 4
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.7e-22 Score=213.98 Aligned_cols=234 Identities=12% Similarity=0.303 Sum_probs=203.8
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
.|...|.|+..-..++ .+++|+.|..+-+|.+.....+. -+.+|..+|.++.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence 3888889998866666 69999999999999886543332 378999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
++|+.+|+|++||+..++.++ +|.+|...+..+.|+|-+. ++++|+.|+.+++||.+...|.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 8999999999999999999 78999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
.|. ++|.++++|+.|.++++||+..++....|..|...+.++.|.|..- .++.|+.|
T Consensus 161 ~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~d 217 (825)
T KOG0267|consen 161 RLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSSD 217 (825)
T ss_pred eec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCCC
Confidence 975 5668999999999999999998888888888877777666655443 58889999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 639 (1113)
++|++||+++.+.+...... ...|.+.+|+|++..+.+|...
T Consensus 218 ~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 99999999988877776544 5679999999999999888654
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.7e-22 Score=213.97 Aligned_cols=232 Identities=15% Similarity=0.228 Sum_probs=202.5
Q ss_pred CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||+..++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 777788888877888999998 67788999988888888999999999999999 8899999999999999999999999
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCe
Q 001258 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~ 974 (1113)
++|.||...+.++.|+|-+.+.++++.|..+++||+.... +.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 9999999999999999999999999999999999998633 344455544 378899999999999995 6799
Q ss_pred EEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus 975 v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
++|||+..|+....|. .|...+.++.|.|..-++++|+.|++|++||+++.+.+.... .....|. +.+|
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-------~~~~~v~--~~~f 246 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-------PETDGVR--SLAF 246 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-------CccCCce--eeee
Confidence 9999999999999987 789999999999999999999999999999999999997765 2233444 4888
Q ss_pred eCCCCCEEEEEeCCC
Q 001258 1055 HPQEPNEFALGLSDG 1069 (1113)
Q Consensus 1055 ~p~d~~~l~s~~~Dg 1069 (1113)
.| ++..+++|..+.
T Consensus 247 n~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 247 NP-DGKIVLSGEQIS 260 (825)
T ss_pred cC-CceeeecCchhh
Confidence 88 787777775543
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=189.84 Aligned_cols=260 Identities=19% Similarity=0.282 Sum_probs=195.8
Q ss_pred CCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCe
Q 001258 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1113)
+..+|++++|+|... .++|+|...|+|-+||+.+.+...... ..+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 889999999999876 789999999999999996444332211 15789999999999999 6678
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-eeEeeccCcCEE
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 513 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 513 (1113)
+.+.|.||+|++-|++++.. ..+..+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999997642 22223433455788899998888 577777777999999997654 566777889999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee----eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
+++++|-.. .+++|+|.|++.+|||++....... ...|.. .+....|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999998765 6899999999999999987544332 223333 44455555555569
Q ss_pred EEEecCCcEEEEECC----CCceEEEEccCCCC---CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 590 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
++.+.|..|+|||.. ...+...+...... -......|.|+..++++|-.-..|-|+|-..+ +.+..+
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el 458 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCEL 458 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeec
Confidence 999999999999983 33333333322111 13446789999999999999999999998776 544443
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.7e-20 Score=193.64 Aligned_cols=327 Identities=13% Similarity=0.275 Sum_probs=229.9
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC--EEEEEECCCcEEEE
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL 645 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw 645 (1113)
++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|+++..+...+ .|.|++|+|.+. .|+++.. ..+.|.
T Consensus 395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEec-CceEEe
Confidence 34444 4478888899999999999999999999999999999998765 599999999654 4555444 346666
Q ss_pred EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 725 (1113)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 725 (1113)
+..-|.+... +........ . -.-...++.
T Consensus 470 np~~G~~~e~---~~t~ell~~----------~--------------------------------------~~~~~p~~~ 498 (733)
T KOG0650|consen 470 NPIFGDRLEV---GPTKELLAS----------A--------------------------------------PNESEPDAA 498 (733)
T ss_pred Cccccchhhh---cchhhhhhc----------C--------------------------------------CCccCCccc
Confidence 5443311111 000000000 0 000112235
Q ss_pred eeeEeccCCCCCC--cceecccCcccccCceEEEEEeCCCceEEEeecC---CeEEEEEccccccCCCCceeeeecCeec
Q 001258 726 SKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLW 800 (1113)
Q Consensus 726 i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~lw 800 (1113)
+..|.-....... .+..+ .|...|..+.|+..|.+|++...+ ..|.|+++.....
T Consensus 499 ~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--------------- 558 (733)
T KOG0650|consen 499 VVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--------------- 558 (733)
T ss_pred ceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------
Confidence 5566544322211 12222 277899999999999999988774 5677776653211
Q ss_pred CCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec
Q 001258 801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1113)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~ 880 (1113)
. ..+. ...+.|.++.|+|...+|++++...|+|||+..+..++.+......|..++.+| .|.-|+.|+.
T Consensus 559 -------Q-~PF~--kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 559 -------Q-SPFR--KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred -------c-Cchh--hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 0 1111 146678999999999999999999999999999888888887888899999999 8888899999
Q ss_pred CCcEEEEEccc-ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258 881 DSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1113)
Q Consensus 881 dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 959 (1113)
|+.++.||+.- .+..++++.|...|++++|++.=.+++||+.||++.|+.-.-........+.+
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV--------------- 692 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV--------------- 692 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE---------------
Confidence 99999999975 46778899999999999999999999999999999998532211100000000
Q ss_pred EccCCcEEEEEcCCeEEEEeCCccceeeccccCCC----CCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 960 FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 960 ~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
.+..+ .+| ...|....|.|..-+|++++.||+|++|.
T Consensus 693 -------------------------PlK~L--~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 693 -------------------------PLKRL--RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred -------------------------eeeec--cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 00111 133 34588889999999999999999999983
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-19 Score=174.66 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=194.7
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1113)
+|.+-|.|+.|.+.|++ +|+++.|++|.|||......--.. ....+.|.+.|..+.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence 48999999999999997 999999999999997544322110 113568999999999977 699
Q ss_pred eEEEEeCCCeEEEEEcc------CCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee-----
Q 001258 434 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 502 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----- 502 (1113)
.+|+++.|+++.||.-. .+.......++......|++|.|.|....+.+++++.||.+|||+......+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 1223334456777888999999999987779999999999999987654322
Q ss_pred -eEee-------ccCcCEEEEeeeecCCc-eEEEEEecC-----CcEEEEEcCCCCC----eeeeeCCCCceEEEEEccC
Q 001258 503 -YIFE-------GHEAPVYSVCPHHKENI-QFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD 564 (1113)
Q Consensus 503 -~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~ 564 (1113)
+.++ .+..+-.|+.|+++.-. .+|+.|+.+ +.++||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 35667788888865432 466666655 4789998766542 2356778889999999997
Q ss_pred CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-----------------eEEEEc-cCCCCCCcCeEEE
Q 001258 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 626 (1113)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 626 (1113)
--+-+ ..|++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 43222 2588899999 9999987311 122222 3345568999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcC
Q 001258 627 NKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 627 s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999653
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.5e-21 Score=209.15 Aligned_cols=244 Identities=13% Similarity=0.219 Sum_probs=190.7
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCC---cceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeE
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS---RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1113)
.+..|.|+.--..+|||++..|.|.+||+.. .+.+ ..+..|+..|++++|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 4566777765555899999999999999986 2222 25889999999999999 67788
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS 514 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 514 (1113)
++||.||+|++||++..+... ++.+....|.+|+|+|...+ .|+++.+.|.+++||++.. ++...+..|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999877554 67788999999999997665 8999999999999999864 566788999999999
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
+.|+| ++.+|+|||.|+.|+|||+.+........ ....++..+.|-|+.+ ..|++++
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs 283 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS 283 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence 99987 55899999999999999998655433322 2334566677776654 2356554
Q ss_pred --cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258 594 --DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 594 --~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||+|..-...+.
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 58899999997543 34555544 55788999976 5678889999998865544444
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.8e-19 Score=179.53 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=141.9
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
...+|..+.|.+++...+|||+.|..|+||.++.++.-.. .........|..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 3578999999998875699999999999999876543220 001111236889999999999999999999
Q ss_pred EEeCCCeEEEEEcc--------C-----CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 437 s~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
+|+++|.|.+|... + .+.......+.+|...|..++|+|++. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222334457889999999999999999 89999999999999999999999
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.+.+|...|..++|.+-. +++++-+.|...+.+.+..
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeee
Confidence 999999999999987654 7999999998666665543
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.3e-17 Score=191.47 Aligned_cols=371 Identities=25% Similarity=0.421 Sum_probs=268.8
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc-eeEeeeeeeeccCCCCcccccccccCCC-cceEEEEE-c
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 429 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 429 (1113)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 34569999999999999995 8888899999999998876 332 123322 46777777 8
Q ss_pred CCCC-eEEEEeC-CCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEe
Q 001258 430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 430 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~ 505 (1113)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. ++++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 6789999999999999999 6777775 999999999999999999
Q ss_pred eccCcCEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 506 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.+|...|.+++|+ +++. ++++++.|+.|++||........ .+..+.... .. .|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence 9999999999987 4444 55666999999999877444433 233333322 11 455
Q ss_pred CCCCEEEEEecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1113)
+++..+++++.++.+++|+...... ...+. .+...+.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence 5555688999999999999987665 44442 335578999999988888889999889999765541 110000
Q ss_pred cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1113)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1113)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1113)
Q Consensus 743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~ 822 (1113)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222334
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EecCCcEEEEEcccceeeeeec
Q 001258 823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44442222334443 2 5667777777665222222222 278888988 6 55554 7899999999999888777666
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
.+...+....+++++..+++++.++++++|+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547899999999999999999999999999877
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.5e-20 Score=187.74 Aligned_cols=263 Identities=13% Similarity=0.162 Sum_probs=193.8
Q ss_pred CcEEEEEcCC-------CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcc------cccccccCCCcceEEE
Q 001258 360 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRV 426 (1113)
Q Consensus 360 ~V~~~~~spd-------g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l 426 (1113)
...|++|... |+ ++|.|+.|-.|.|||+.-...+. ....+++.... .......+|++.|.++
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence 3356666433 56 59999999999999986432221 01111100000 1112345899999999
Q ss_pred EEcCC-CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 427 IWSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 427 ~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
+|+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+.......-
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence 99985 5578999999999999999999776 67789999999999999887 8999999999999999854333322
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
-...+.|..++|.+... ..++++..||+|+-+|++.. ++..++..|...|.+++++..-.
T Consensus 326 wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p------------------ 386 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP------------------ 386 (463)
T ss_pred EEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC------------------
Confidence 22567899999987654 67888899999999999987 67778899999999988877654
Q ss_pred CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEECCCcEEEEEcCCCcc
Q 001258 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
+.+++++.|+.|++|++............-......|.++.|+- -+++.|+..+.+++||+.+...
T Consensus 387 --~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 387 --GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred --cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 35888999999999998754432222211112335677777754 4677788888899999988743
No 157
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-20 Score=200.47 Aligned_cols=269 Identities=13% Similarity=0.184 Sum_probs=199.4
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 436 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 436 (1113)
.....++...++-..++++| .....||.+........ ..+.+-.. + .-.-.+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~k-----q-----n~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKTK-----Q-----NKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeecccc-----c-----ceeeehhhcccccchhhhhe
Confidence 45677888888887755544 33566666654322110 01110000 0 0012455677876 788999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1113)
+++..|.|.+||+.....-+....|..|...|+++.|++.... +|++||.||+|++||++..+-..++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222233368899999999999998887 899999999999999999999999999999999999
Q ss_pred eeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 517 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
|++.. +..++++...|.+.+||++... ....+..|.++|.++.|+|++. +|++|+.|
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~---------------------~lATGGRD 241 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE---------------------WLATGGRD 241 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc---------------------eeeecCCC
Confidence 99876 5799999999999999998754 3456778888777777777554 89999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEE--CCCcEEEEEcCCCccceeccccccccc
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDA 664 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1113)
+.|+|||+.+.+.......+. ..+|.++.|-|+.. .|++++ .|..|+|||+.....+...+..|...+
T Consensus 242 K~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v 312 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV 312 (839)
T ss_pred ccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence 999999998765433332222 35789999999765 455554 477899999998877778887776643
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=6e-20 Score=179.96 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=195.5
Q ss_pred CCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-C
Q 001258 357 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G 432 (1113)
Q Consensus 357 h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 432 (1113)
|...-..++|+-| |.-++|+|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence 6677788888754 44578888899999999999988765 37899999999999995 5
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee----------
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------- 502 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---------- 502 (1113)
++++++|.|.+|++|++++..++..+..+.+|.+.|.++.|+.+|. +++++|.|.++++|++...+..
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7899999999999999999999988888889999999999999999 7999999999999999732110
Q ss_pred ---------------e---EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEE-EEc
Q 001258 503 ---------------Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS 562 (1113)
Q Consensus 503 ---------------~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s 562 (1113)
. +-.-|...|.|+.|.. +++++-+-++.|.+|..-.. +............+-+ .|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 0 1124777788877642 58999999999999976221 1111111111111100 000
Q ss_pred cCCCeEEeccccCceeEE--EecCCCCEEEEEecCCcEEEEECCCCce--EEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258 563 ADGTRTYQGFRKRSLGVV--QFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 638 (1113)
.....++.+ +|+|-++.|+.|...|.|++||++...+ ..++........|...+|+.|+.+|+...+
T Consensus 303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 111234443 5567788999999999999999987665 333444444568999999999999999999
Q ss_pred CCcEEEEEcC
Q 001258 639 DNGIKILATS 648 (1113)
Q Consensus 639 dg~i~iwd~~ 648 (1113)
|++|.-||..
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.8e-19 Score=178.45 Aligned_cols=175 Identities=24% Similarity=0.396 Sum_probs=145.0
Q ss_pred CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
.+.+...-+|..+-++++|||--.--|++|..-+.|++|...+|.-... ..-+.+|+..|..++
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence 3444444559999999999993222388998899999999988653321 113677999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---Cceee
Q 001258 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY 503 (1113)
Q Consensus 428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~ 503 (1113)
||| ....||+||.||+|+|||++.+.....+ ..+.|.+.|+.|.|+..-. +|++|+.||+++|||++. ++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 999 4568899999999999999998544333 2489999999999998888 899999999999999984 67889
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999999999998776 5888899999999999864
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.2e-19 Score=173.42 Aligned_cols=264 Identities=16% Similarity=0.253 Sum_probs=179.4
Q ss_pred cCCCCcEEEEEcC----CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 356 NQGSSPMSMDFHP----VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 356 ~h~~~V~~~~~sp----dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
+|+.+|..++|++ +...++|+.+ ...+.||+......+. .++ ...-..|...-..++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--~lq------------~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--LLQ------------SYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--eee------------eccCCCCCcceEEEEEEec
Confidence 4889999999984 3333566554 5688899886543221 111 1122357778888999875
Q ss_pred ----CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe--
Q 001258 432 ----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 505 (1113)
Q Consensus 432 ----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-- 505 (1113)
.-+||.|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..|+..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3478999999999999999998776 68899999999999999987 8999999999999999999999887
Q ss_pred -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE-----------E--ec
Q 001258 506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT-----------Y--QG 571 (1113)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----------~--~~ 571 (1113)
.||.+.|.++.|+.+ |.+|++++.|.+|++|++...+-...++ .+..|++++... + ..
T Consensus 177 ~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred cccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcCCccccccccccccc
Confidence 579999999998754 4699999999999999998533222111 112333333210 0 00
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEEC-CCCceEEE-------------EccCCCCCCcCe--EEECCCCCEEEE
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTS-------------IDADGGLPASPR--IRFNKDGCLLAV 635 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~-------------~~~~~~~~~v~~--~~~s~~~~~l~~ 635 (1113)
-+...+.++.|- |+++++-+-++.|..|.. +-++.+.. +.... ..+.- .+|.|-++.||.
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEeecHHHHHHhh
Confidence 011122222222 467888888999999987 22222111 11111 12222 344555677777
Q ss_pred EECCCcEEEEEcCCC
Q 001258 636 STNDNGIKILATSDG 650 (1113)
Q Consensus 636 ~~~dg~i~iwd~~~~ 650 (1113)
|...|.+.+||+...
T Consensus 325 gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNN 339 (385)
T ss_pred ccCCCcEEEEECCCC
Confidence 777777777777655
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4e-19 Score=181.53 Aligned_cols=196 Identities=16% Similarity=0.235 Sum_probs=157.5
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeee------------------eecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 492 (1113)
-|+|+|.|..|..|.|||+.--..+.+... -.+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 478999999999999999863222222112 2379999999999998877 899999999999
Q ss_pred EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998865 47999999999999999985333222222234456666665543
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCC-ceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
..++++..||+|+-+|++.. +++.++..|.. .|.++++++ ...++++++.|+.+++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 35778889999999999875 88889888854 899999998 4568999999999999998654
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=177.56 Aligned_cols=312 Identities=12% Similarity=0.152 Sum_probs=222.8
Q ss_pred CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
+-......+-+.++|++++|+|..+..++++|+.-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------- 247 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------- 247 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence 33444556668899999999999988899999999999999996332 3445667777888888887654
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
..+++.+.||+|+.-|++.+.....+........+.++.|+.+...++.++.=|.+.+||..++...
T Consensus 248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 4689999999999999987655444443223345678888888888888888889999999988665
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
...+.-|...+... ++.|.. ...+++++.|++.+|||+..
T Consensus 315 ~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 315 YENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred chhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeeehhh
Confidence 66666665544332 333332 56789999999999999987
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
....... .+.. ..|...|.++.|||++-.|++.+.|..|+|||..- +.-|+...+.......
T Consensus 355 l~~K~sp-~lst--~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~- 416 (498)
T KOG4328|consen 355 LRGKASP-FLST--LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR- 416 (498)
T ss_pred hcCCCCc-ceec--ccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCc-
Confidence 6554431 1112 34899999999999988899999999999998630 1112222222222111
Q ss_pred CCCCCC--CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeE-EEEecCCCcEEEEEecCCcEEEEE
Q 001258 814 DSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 814 ~~~~~~--~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
+.. ...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|.+..++|-|...|.|+||-
T Consensus 417 ---t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 417 ---TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ---ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 111 123468999999999998 67899999998887777543332 4544 478994444666667788999886
Q ss_pred cc
Q 001258 889 VR 890 (1113)
Q Consensus 889 ~~ 890 (1113)
-+
T Consensus 494 ~k 495 (498)
T KOG4328|consen 494 NK 495 (498)
T ss_pred cC
Confidence 43
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.1e-19 Score=180.30 Aligned_cols=292 Identities=12% Similarity=0.179 Sum_probs=214.4
Q ss_pred eeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeee
Q 001258 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV 795 (1113)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1113)
+..++....+++||.........+.... ....+.++.|......+ +..+.|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------ 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------ 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence 4445556789999998766555544332 22348888888776532 33445788888864321
Q ss_pred cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001258 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1113)
Q Consensus 796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~ 874 (1113)
++.+...... ....-.|++......|+++|+ .++|+|||++...+.+.+..|...|+++.+.- ...+
T Consensus 68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 1221111111 122445666656668999998 89999999998778888999999999999998 6789
Q ss_pred EEEEecCCcEEEEEcccceeeeeeccccc-CeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1113)
||+++..|.|.|..+.++.....|...++ .|.-|.|++..++ |.+++.+|.|.+||+..... .......|..
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsA-- 209 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSA-- 209 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccC--
Confidence 99999999999999999887777765434 4558999987765 56889999999999987433 2333444443
Q ss_pred CCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc-e
Q 001258 953 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1029 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~-~ 1029 (1113)
+...++|+|....|++ |.|.+|.+||.........+.. ..+...++|+++|.+|++|+..|.|..||+...+ .
T Consensus 210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 6789999998776665 7999999999987776666653 6799999999999999999999999999997543 4
Q ss_pred eeecCCCcccCCCcccCccceEEEEeC
Q 001258 1030 RCRINPSAYLPAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus 1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p 1056 (1113)
+..+. .|...|+. ++|-|
T Consensus 286 v~v~s-------ah~~sVt~--vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDASVTR--VAFQP 303 (673)
T ss_pred ceEee-------ecccceeE--EEeee
Confidence 44444 77778886 55555
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.6e-16 Score=182.66 Aligned_cols=369 Identities=22% Similarity=0.392 Sum_probs=270.8
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCc-CEEEEeeeecCCce-EEEEEec-CCcE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI 535 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 535 (1113)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567999999999999999 78888899999999998887 6777776443 77777764 55555 5555444 9999
Q ss_pred EEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec-CCcEEEEECCCCceEEEEc
Q 001258 536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID 613 (1113)
Q Consensus 536 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 613 (1113)
.+|+... ......+..+...+..+++++++. .+++++. ++.+++|+...+..+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence 9999987 566666777777777777777665 5777775 9999999999888888887
Q ss_pred cCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcCCCcccee-ccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258 614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1113)
Q Consensus 614 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1113)
.+ ...+.+++|+|++. ++++++.|+.|++||...+ .... .+.+
T Consensus 196 ~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~-------------------------------- 240 (466)
T COG2319 196 GH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG-------------------------------- 240 (466)
T ss_pred cC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC--------------------------------
Confidence 64 55799999999998 5555589999999965533 1111 0000
Q ss_pred ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec
Q 001258 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1113)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 771 (1113)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc
Q 001258 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1113)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~ 850 (1113)
|.... ...|++++.++++++ |+.+++|++....
T Consensus 241 ---------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 241 ---------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred ---------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 11221 115555665555554 6777777776544
Q ss_pred e-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec--ccccCeEEEEEcCCCCEEEEE-eCCCcE
Q 001258 851 T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQL 926 (1113)
Q Consensus 851 ~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~L~s~-s~D~~v 926 (1113)
. ...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 3 333456778899999999 77778779999999999998877766665 888889999994333556655 688999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeeccccCCCCCCeeEEEEC
Q 001258 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
.+|++.... ........ ..+..+.+++ ...+.. ..++.+.+|+............. ...+....++
T Consensus 354 ~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 421 (466)
T COG2319 354 RLWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFS 421 (466)
T ss_pred EeeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEEC
Confidence 999998854 11111111 1267888888 533333 47889999999988887776521 1789999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 001258 1005 CDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 1005 ~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
+++..+++++.++.+++|+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 422 PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEecCCCcEEEEeccC
Confidence 9999999999999999999988
No 165
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2.8e-17 Score=171.02 Aligned_cols=506 Identities=14% Similarity=0.152 Sum_probs=293.7
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
.|...|.|+.|+.+.. ++.+ +.|..+.+|.-.+......... .....+ -..|-++ .+..=-.....|
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~-----p~df~p-----t~~h~~~-rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKL-----PDDFVP-----TDMHLGG-RSSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhC-----CcccCC-----ccccccc-cccCCCCCcceE
Confidence 5777888999999887 3444 4566666665444332221000 000000 0011000 000000134578
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
+.++.||.+.|.+-.. +.-+ .+.+|.+.|.+-.|+|||. -|++++.||.|+||. ++|....++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8889999998877443 3222 5789999999999999999 699999999999999 8888777777778899999
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
+|.|+.+ +.+++.+ +.+.+=-+.....+..+..|.+-|.++.|++.. +.+++|++|
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---------------------~lI~sgGED 207 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---------------------NIIASGGED 207 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc---------------------cceeecCCc
Confidence 9988765 4666554 345554555555666666776666666655544 479999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1113)
-..++||. .|..+..-..|. .+|++++|+|+ +.++.++. +++|+=
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~e--y~ITSva~npd-~~~~v~S~-nt~R~~------------------------------ 252 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEE--YAITSVAFNPE-KDYLLWSY-NTARFS------------------------------ 252 (737)
T ss_pred eeEEeecc-cCcccccCChhc--cceeeeeeccc-cceeeeee-eeeeec------------------------------
Confidence 99999996 456665555554 47999999999 56665554 333310
Q ss_pred ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1113)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1113)
....+.|.
T Consensus 253 ------------------------------------------------------------------------~p~~GSif 260 (737)
T KOG1524|consen 253 ------------------------------------------------------------------------SPRVGSIF 260 (737)
T ss_pred ------------------------------------------------------------------------CCCccceE
Confidence 01346788
Q ss_pred EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
.++||+||..+++++..|.+.+-..-. ..-+ -+.+=++
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ie-----------------------------------q~l~-------~~n~~~t 298 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAIE-----------------------------------QQLV-------SGNLKAT 298 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeeeh-----------------------------------hhhh-------hccceeE
Confidence 999999999999999998876522110 0000 0011111
Q ss_pred E-eCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258 836 A-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 836 ~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1113)
. ....|.+-|+.++.+ ..++ ....+...+..- + +|+++. ...|++|.-........+.+....+.-+.-+. .
T Consensus 299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k 371 (737)
T KOG1524|consen 299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K 371 (737)
T ss_pred eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence 1 244566777766544 2222 344566665543 3 344333 24688887655444444444443332222111 1
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--E-cCCeEEEEeC-Cccceeeccc
Q 001258 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQWV 990 (1113)
Q Consensus 915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~-~d~~v~v~d~-~~~~~~~~~~ 990 (1113)
.+++ ....++.++..+....... .+++... .....-..|-....|+. . ....+.+||. .+|+....-.
T Consensus 372 ~fli--~dgsSi~lytyegR~~~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 372 YFLI--LDGSSIWLYTYEGRLHLNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred heEE--ecCcEEEEEEecCceecCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 2222 2233455555444211000 0111100 11222233444445555 2 3456788998 7777654433
Q ss_pred cCCCCCCeeEEEECC----CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258 991 PRESSAPITHATFSC----DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 991 ~~~h~~~v~~l~~s~----dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
.-.|...|..++... +.+.++--..++.++|-.+.+.-.-.++. ..| .-|.. ++|. |-.-+++|-
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG--TmVht--Lawn--dttNiLcgl 512 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG--TMVHT--LAWN--DTTNILCGL 512 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh--hhhhh--hhhc--cccceeeee
Confidence 224567777777754 55667777777777776654322111111 112 23443 6776 445678888
Q ss_pred CCCcEEEEeccCCC
Q 001258 1067 SDGGVHVFEPLESE 1080 (1113)
Q Consensus 1067 ~Dg~v~vW~~~~~~ 1080 (1113)
.|+++.||-.++.-
T Consensus 513 qDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 513 QDTCFSVWYYPNEV 526 (737)
T ss_pred ccceEEEEEcCCcc
Confidence 99999999887643
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-18 Score=178.16 Aligned_cols=294 Identities=14% Similarity=0.213 Sum_probs=211.7
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE--ECCCcEEEEEcCCCccceeccccccccccc
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1113)
|..++....+++||....+....+..+.....+.++.|+.... |+++ +.|..+++|.-......+....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~-------- 75 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR-------- 75 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee--------
Confidence 4455556689999998877776666555556789999998664 4433 4567788885322100000000
Q ss_pred cCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccC
Q 001258 667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1113)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1113)
..
T Consensus 76 ----------------------------------------------------------------k~-------------- 77 (673)
T KOG4378|consen 76 ----------------------------------------------------------------KL-------------- 77 (673)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred cccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1113)
Q Consensus 747 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~ 826 (1113)
....-.|++......++++++..++|+|||+.. +++...+.+ |...|+++.+
T Consensus 78 ---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~Y 129 (673)
T KOG4378|consen 78 ---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDY 129 (673)
T ss_pred ---ccchHHHHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEe
Confidence 011122333334447789999999999888752 233333444 8999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-eccccc
Q 001258 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSK 903 (1113)
Q Consensus 827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~ 903 (1113)
+....+||+++ .|.|.|..+.++....+|....+ .+.-+.|+|....+|.+++.+|.|.+||+.....+.. ...|+.
T Consensus 130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 99999999999 68899999999888777765433 4668999995566888999999999999987666544 467999
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCC
Q 001258 904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT 981 (1113)
Q Consensus 904 ~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~ 981 (1113)
+...++|+|.. .+||+.+.|..|.+||+...... ...... .+...++|+++|.+|++| ..|.|..||++
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-----CCcceeeecCCceEEEeecCCceEEEEecc
Confidence 99999999854 67889999999999999863321 111122 357899999999999996 88999999998
Q ss_pred ccceeeccccCCCCCCeeEEEECCCC
Q 001258 982 KLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
..+..-... ..|...|++++|-+..
T Consensus 281 ~~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 281 STKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCCCceEe-eecccceeEEEeeecc
Confidence 665433322 3788899999997654
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=6.6e-18 Score=170.72 Aligned_cols=162 Identities=14% Similarity=0.219 Sum_probs=132.3
Q ss_pred cceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCc------eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 421 VSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 421 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~------~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.+|..+.|.+++. .||||+.|..|+||.+..+. .+.....|..|...|++|.|+|+|. +++||+++|.|.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEE
Confidence 4899999999877 99999999999999887532 3445567889999999999999999 8999999999999
Q ss_pred EeCC--------C--------CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceE
Q 001258 494 WDAT--------N--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 557 (1113)
Q Consensus 494 wd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 557 (1113)
|-.. + -...+.+.+|...|..++|+++ +.++++++.|..+++||+..+.....+..|.+.+.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 9865 2 1223466789999999998764 47999999999999999999888888888888888
Q ss_pred EEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1113)
Q Consensus 558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1113)
.++|.|-++ ++++-+.|...+.+.+...+
T Consensus 170 gvawDpl~q---------------------yv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 170 GVAWDPLNQ---------------------YVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred eeecchhhh---------------------hhhhhccCcccceeeeeeee
Confidence 877777666 56676667666666554433
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-19 Score=204.48 Aligned_cols=279 Identities=13% Similarity=0.163 Sum_probs=212.1
Q ss_pred ccCcccCCccccCCcccCCCCCCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCe---EEEEEecCCcEEEEecCCccee
Q 001258 318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL 394 (1113)
Q Consensus 318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~---ll~~gs~dg~i~iwd~~~~~~~ 394 (1113)
++.+.+|.++|..... .-+....+.-..+-+.++|++.|.. +||.|..||.|.+||...- +
T Consensus 38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~ 101 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--I 101 (1049)
T ss_pred ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--c
Confidence 5667778777765431 1122233445677889999998876 6999999999999998752 0
Q ss_pred EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeeee--ecccCCeeEE
Q 001258 395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDI 471 (1113)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~V~~v 471 (1113)
. ..... .......|.+.|..++|++.+. +||+|+.||.|.|||+..-+.-- ++ ..-.+.|.++
T Consensus 102 ~----------~~~~~-~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 102 A----------NASEE-VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL 167 (1049)
T ss_pred c----------CcchH-HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence 0 00111 1124678999999999999655 99999999999999998744221 22 1245689999
Q ss_pred EEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc--CEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCC-C
Q 001258 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLG-S 545 (1113)
Q Consensus 472 ~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~-~ 545 (1113)
+|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+ .+..+.|+|+... .|++++. |+ .|.+||++... .
T Consensus 168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCc
Confidence 99988776 799999999999999999988887776654 4678899998764 4555544 43 59999998654 3
Q ss_pred eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258 546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625 (1113)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 625 (1113)
...+..|...|.++.|++.+. .++++++.|+.|.+|+.++++.+..+... ...+..+.
T Consensus 246 ~k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~ 303 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQ 303 (1049)
T ss_pred hhhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCC--Ccceeeee
Confidence 456678888888888877664 36899999999999999999999998764 35789999
Q ss_pred ECCCC-CEEEEEECCCcEEEEEcCCC
Q 001258 626 FNKDG-CLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 626 ~s~~~-~~l~~~~~dg~i~iwd~~~~ 650 (1113)
|+|.. ..+++++.||.|.|+.+...
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecC
Confidence 99955 48899999999999998765
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=4.7e-17 Score=159.26 Aligned_cols=227 Identities=14% Similarity=0.145 Sum_probs=168.6
Q ss_pred CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC---CccEEEEecCCCEEEEEe
Q 001258 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE---AVPCFALSKNDSYVMSAS 837 (1113)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~---~v~~l~~s~~~~~l~~~s 837 (1113)
|+..++++.+.+.-|++||.-+ |.+... +....|.. ...+++|+|||..|++|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaft----------------------G~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFT----------------------GKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeeccc----------------------cccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 6677788888888888887543 322211 11111222 345799999999999999
Q ss_pred CCeEEEEECC-CCceee---ee----cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEE
Q 001258 838 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1113)
Q Consensus 838 dg~i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1113)
..+|++||+. .|.... ++ .+..+-|.|++|+|.+.+.+|+|+....+-||.-....++..+-+|.+.|+.|+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 9999999993 443221 11 223566899999998888999999999999999888899999999999999999
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc-ccee
Q 001258 910 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 986 (1113)
Q Consensus 910 ~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~-~~~~ 986 (1113)
|.+||+.|.+|+. |..|..||++...... -.+..|......-......|+|.+|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPV----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchh----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999984 7789999998754432 2222222211122234556899999996 999999999998 6645
Q ss_pred eccccCCCCCCeeEEEECCCCCEEEEEeCC
Q 001258 987 KQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1113)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1016 (1113)
..+. .|...+..+++.|-=.++++++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678999999999997777776643
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=6.9e-18 Score=160.54 Aligned_cols=308 Identities=13% Similarity=0.184 Sum_probs=198.7
Q ss_pred ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCcee
Q 001258 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1113)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 578 (1113)
.+...+++|.+.|++++|-.+ .+|++|..-|.|++|++.+......+. .+...|+.+..-|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 356677899999999997543 379999999999999999988887777 5566788888777765
Q ss_pred EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-cEEEEEcCCCccceecc
Q 001258 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 657 (1113)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 657 (1113)
+.+-+.|+.+.+|++..+..+..-. -.++++.|.+-. +...+... ..-.++-+...+ .+..
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 8888999999999998766544322 134455554321 11111100 011111000000 0000
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1113)
++ +..-.+++-+-.
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADDS----- 145 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCch-----
Confidence 00 000001110000
Q ss_pred CcceecccCcccccCceEEEEEeC-CCc--eEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 738 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
..+..+.+.+..+.. ++. .+++|.++|.+.+||+..++...+-. +.|.. ....
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv------~~~~-- 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKV------ESPN-- 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccc------ccch--
Confidence 011223333333211 122 35677788999999998653211110 11111 1111
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~ 889 (1113)
..|..+|.++.+.+.-..=++|+ +..+..|+++. +.+ ...+......+..+.+-| |++++|+++.|++||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 13889999999987655555665 77888998863 322 222333455688899999 9999999999999999999
Q ss_pred ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
++...+..++.|++.|++++|+||...+|.+|.|++|-+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=173.26 Aligned_cols=167 Identities=20% Similarity=0.269 Sum_probs=129.9
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
+|.||.+.|+|++|+.+|. +|++||+|-.+.|||.-..++++.+ .||...|.++.|.|..+..++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 8999999999999999988888776 689999999999999888999999999999999
Q ss_pred EcCCCCC----------eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258 539 LYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1113)
Q Consensus 539 d~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1113)
|+...+. ...+..|...|..++..|++. +.+.++++||+|+-+|++....
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCcc
Confidence 9985322 122333444455555555443 4688999999999999986321
Q ss_pred E-EE-------EccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcC
Q 001258 609 L-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 609 ~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 648 (1113)
- .. .......-...|+..+| +..+|++|+.|-..++||..
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1 10 01111123457899999 56789999999999999963
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=161.61 Aligned_cols=405 Identities=15% Similarity=0.157 Sum_probs=235.5
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE-eCC
Q 001258 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 441 (1113)
Q Consensus 363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 441 (1113)
-++|||+|+| +|+.+. ..+.|-|.++-+..+. -.--+.|..+.|+.|.-+++.+ +.|
T Consensus 13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeee-eEEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 3679999997 887764 4888888877554331 1113478889999998887664 788
Q ss_pred CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC
Q 001258 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1113)
Q Consensus 442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1113)
+.|.+|++...+-.. .+.....++.+++|||||+. ++.+...|-.|.||.+.+.+.... .-....+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC--C
Confidence 999999999877554 56777889999999999987 788888999999999988776442 2223445667765 4
Q ss_pred CceEEEEEecCCcEEEEEcC---CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcE
Q 001258 522 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1113)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 598 (1113)
+|++.+..+.-...-...+. .-.....+....-..+.+.|+||| +.++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la-------- 194 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA-------- 194 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence 56777776653211111111 001112223333334455555555 4554
Q ss_pred EEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1113)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1113)
+||---.-.+..+.. .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+-. ...... . ..
T Consensus 195 -Vwd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~eflh-l~s~~d-----p-~~--- 259 (447)
T KOG4497|consen 195 -VWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFLH-LCSYHD-----P-TL--- 259 (447)
T ss_pred -Eecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhcc-chhccC-----c-hh---
Confidence 454322212222211 124788999999999999999999998765443 22221110 000000 0 00
Q ss_pred hhhhhhhhccccccccccccc-ccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEE
Q 001258 679 SAAAAAAATSAGLADRAASMV-SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1113)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 757 (1113)
..+.... ..++. .+.++ .+. -.+-...+|...+ .+..+
T Consensus 260 ------~~~~ke~---~~~~ql~~~cL----sf~---------p~~~~a~~~~~se-------------------~~YE~ 298 (447)
T KOG4497|consen 260 ------HLLEKET---FSIVQLLHHCL----SFT---------PTDLEAHIWEESE-------------------TIYEQ 298 (447)
T ss_pred ------hhhhhhh---cchhhhccccc----ccC---------CCccccCccccch-------------------hhhhh
Confidence 0000000 00000 00000 000 0000000111000 00000
Q ss_pred EEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1113)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 837 (1113)
...| +.+-. ..+.+. .. +..-.+.-++|++|..++++-.
T Consensus 299 ~~~p-------------v~~~~--------------------lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 299 QMTP-------------VKVHK--------------------LKPPTD------FP--NPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred hhcc-------------eeeec--------------------ccCCCC------CC--CcccccceeeecCCceEEeeec
Confidence 0000 00000 000000 00 1234566799999999999987
Q ss_pred C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258 838 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 838 d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1113)
| +.+.+||++..+....+. ...+|....|.| +...|+.......+++|......++..- +..-.|..++|..+|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPG 414 (447)
T ss_pred CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCC
Confidence 5 679999999877655554 566899999999 6667777777778999987654444332 233679999999999
Q ss_pred CEEEEEeCCCc
Q 001258 915 NVLVSSGADSQ 925 (1113)
Q Consensus 915 ~~L~s~s~D~~ 925 (1113)
..++-.+.|.-
T Consensus 415 ~~i~l~~kDaf 425 (447)
T KOG4497|consen 415 EFIVLCGKDAF 425 (447)
T ss_pred cEEEEEcCCce
Confidence 99999999874
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=5.1e-17 Score=159.05 Aligned_cols=274 Identities=16% Similarity=0.265 Sum_probs=189.6
Q ss_pred eeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-------ce-----eeEeec-cCcCEEEEeeee-----cCCceEEEEE
Q 001258 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFEG-HEAPVYSVCPHH-----KENIQFIFST 529 (1113)
Q Consensus 468 V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-------~~-----~~~~~~-h~~~v~~~~~~~-----~~~~~~l~s~ 529 (1113)
...+.|+|||. .|++-+.|..+++|++... .. ..+++- ....|...+|-+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34689999999 7999999999999998521 11 111211 234566666642 3455789999
Q ss_pred ecCCcEEEEEcCCCCCeeeeeCCCC-----ceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC-
Q 001258 530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 603 (1113)
Q Consensus 530 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~- 603 (1113)
+.+.-|++||.-+++....+..-.. ...+++|+||| .+|++| ....|++||+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---------------------eqlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---------------------EQLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---------------------CeEeec-ccceEEEeecc
Confidence 9999999999998877765543221 22344555555 456654 5689999998
Q ss_pred CCCceEEEEc-----cCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCccc
Q 001258 604 DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 677 (1113)
Q Consensus 604 ~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1113)
+.|+...... ..+..+.+.+++|+| +...+++|+....+-|+.-... .++..
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l--------------------- 245 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL--------------------- 245 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence 5555332221 112234677899999 5568888888777766653322 11100
Q ss_pred chhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEE
Q 001258 678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1113)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 757 (1113)
T Consensus 246 -------------------------------------------------------------------------------- 245 (406)
T KOG2919|consen 246 -------------------------------------------------------------------------------- 245 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1113)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 837 (1113)
+ .+|.+.|+.+.|.++|+.|.+|+
T Consensus 246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence 0 02777788888888888888887
Q ss_pred --CCeEEEEECCC-CceeeeecCCCC-CeeEEE--EecCCCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEEEEE
Q 001258 838 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 910 (1113)
Q Consensus 838 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~l~--~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~ 910 (1113)
|..|..||++. ...+..+..|.. .-..+- ..| ++++||+|+.||.|++||+++ +..+..+..|++.|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 78899999874 444555665654 223344 456 789999999999999999998 7778888889999999999
Q ss_pred cCCCCEEEEEeCCC
Q 001258 911 SHALNVLVSSGADS 924 (1113)
Q Consensus 911 s~d~~~L~s~s~D~ 924 (1113)
+|--.++++++...
T Consensus 349 nP~mpilatssGqr 362 (406)
T KOG2919|consen 349 NPIMPILATSSGQR 362 (406)
T ss_pred CcccceeeeccCce
Confidence 99988999887643
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.8e-17 Score=164.23 Aligned_cols=221 Identities=14% Similarity=0.244 Sum_probs=168.1
Q ss_pred ccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEec
Q 001258 412 QAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486 (1113)
Q Consensus 412 ~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s 486 (1113)
+..+..||+++|..++|+| +...||+||.|.+|.||++..+.. ..+...|.||...|-.|+|.|.... +|++++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag 151 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAG 151 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhcc
Confidence 3346889999999999999 788899999999999999875533 2345578999999999999999877 799999
Q ss_pred CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC-ceEEEEEccCC
Q 001258 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADG 565 (1113)
Q Consensus 487 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~ 565 (1113)
.|.+|.+||+.+|+.+.++. |.+.|.+++|+ .||.++++.+.|+.|++||.++++.+..-..|.+ .-....|-.+|
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 99999999999999998888 99999999976 4668999999999999999999877766544433 33344444444
Q ss_pred CeEEeccccCceeEEEecCCCCEEEEEe----cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCC
Q 001258 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDN 640 (1113)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 640 (1113)
. +++.+ .+..+-+||..+.+.-..+..-.....|.---|.+|..+++.+ -.|+
T Consensus 229 ~----------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 229 K----------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred c----------------------eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 4 44432 5788999998764432222222223345555677888777655 4689
Q ss_pred cEEEEEcCCCccceeccc
Q 001258 641 GIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~ 658 (1113)
.||.|.+.+....+..+.
T Consensus 287 ~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 287 SIRYFEITNEPPFVHYLN 304 (472)
T ss_pred ceEEEEecCCCceeEEec
Confidence 999999988744444443
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.7e-16 Score=146.18 Aligned_cols=289 Identities=11% Similarity=0.114 Sum_probs=196.9
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
.|.+-+++|.+++++++..+|.|.++.+..-..... ...|+...... ..|..+|+.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 355567899999999999999999998764211100 11222222112 3499999999997 568
Q ss_pred EEEEeCCeEEEEECCCCce------eeee--c-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 833 VMSASGGKISLFNMMTFKT------MATF--M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~~~~~------~~~~--~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
|++++||.|+=|....... +... + ..-..|+++-..|..+.+|.+| .|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc
Confidence 9999999999887653222 1111 1 1234689999999556555545 79999999999999999999
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d 979 (1113)
||++.|.++.--.....+.||++||++++||.++++.....-....+....+...-.-.+..-+..+++++....+.+|.
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH 233 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence 99999999998666678899999999999999997764321111111111100111235666778899999999999999
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
++..++...+.. ..++..+.|.. +.+++++..+.|.-|.+. |.+...+. .+|.+ .+......+| -
T Consensus 234 Lrsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s~~-c~s~s~~~~p--~ 298 (325)
T KOG0649|consen 234 LRSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIP------VESTA-CYSASWQTSP--I 298 (325)
T ss_pred ccCCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEecc------CCccc-eeeecccCCc--e
Confidence 999999998876 55788888854 478888888899999986 44444433 12222 2221222233 3
Q ss_pred CEEEEEeCCCcEEEE
Q 001258 1060 NEFALGLSDGGVHVF 1074 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW 1074 (1113)
+.|..++..+.+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 455556666677665
No 176
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-15 Score=166.51 Aligned_cols=510 Identities=14% Similarity=0.153 Sum_probs=289.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-----
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 431 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 431 (1113)
|...-.++.|+|.| |+|-|+. ..|.+-|..+-+.+. .+.-|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 34456889999999 6888764 578888887776665 36678899999999873
Q ss_pred -C------CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC---CCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 432 -g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
+ -+||++...|.|.+||...+..+. .+..|.++|..++|-+ +.++ +++.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999887554 6788999999999975 3434 555556678999999999999
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-------eEEec---
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 571 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--- 571 (1113)
............|+.+.|-... .+..-+..|.+.+-+.-..... ..+...+.+..+-. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 8877766666676776665443 3444444565555543221110 00001111111100 00000
Q ss_pred -cccCc------eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC--CEEEEEECCCcE
Q 001258 572 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 642 (1113)
Q Consensus 572 -~~~~~------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 642 (1113)
..... ..-++|+|.-+.++-..-...+.++|++-..++.......+ .+.-+.+-|++ ..|++...||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 00000 11246677766666666778899999998888888876644 45567777754 579999999999
Q ss_pred EEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccC
Q 001258 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1113)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1113)
.+|-.+......+.-..+ ++ .+.
T Consensus 299 tirvrk~~~~~f~~~~~~--------------l~-------------------------------------------~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNAS--------------LS-------------------------------------------MDL 321 (1062)
T ss_pred EEEEeeccCccccccchh--------------hc-------------------------------------------ccc
Confidence 999654321111110000 00 000
Q ss_pred CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
...+.+.... ....+......|. ...++....+|...+|.+.++....+.......-..-+|
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0000000000 1111122222232 333444555666666666543332222110000000000
Q ss_pred CCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCe--EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001258 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~ 879 (1113)
....... -....-+.+|.||. -+.|. +++--+.......... .+. +....-| ++|.|.
T Consensus 385 f~~~~~~---------v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~p--~~n-~~~~~~p----LvAvGT 444 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVENDP--GGN-TPAGTVP----LVAVGT 444 (1062)
T ss_pred ccCceee---------hhhccccchhhcCC----CCCCceeeecccCcccceeecCC--CCC-ccceeee----eEEeec
Confidence 0000000 00000011111110 00010 0000000000000000 111 1111222 889999
Q ss_pred cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccccccCCCCC
Q 001258 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1113)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1113)
..|+|.++|+.++...+.+..|.+.|.++.|..... |++.+. -+.+.+-|+.+|.....+-. ..
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l-----~~ 518 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL-----QK 518 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccC-----CC
Confidence 999999999999999999999999999999975543 444332 24577888888654332222 22
Q ss_pred CCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCC-eeEEEEC
Q 001258 950 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 1004 (1113)
Q Consensus 950 ~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~-v~~l~~s 1004 (1113)
+...+|..+..|.-|+|+++. .+.-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs 572 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS 572 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence 233689999999999999995 888999999998887766542 334 8889998
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=6.8e-17 Score=162.43 Aligned_cols=245 Identities=14% Similarity=0.195 Sum_probs=174.9
Q ss_pred CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
+...-..-+|+++|..++|+|.....+|+||.|.+|.||++..+...... ......|.||...|--++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEe
Confidence 34444455799999999999998889999999999999999876554321 112236899999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
|+| -.+.|++++.|.+|.+||+.+|+.+- ++. |.+.|+++.|+.||. ++++.+.|+.|+|||.++++.+..-.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence 999 46688999999999999999998765 565 999999999999999 79999999999999999999999888
Q ss_pred ccCcCEEEEeeeecCCceEEEEEe---cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
+|.+.=..-++ +-.+|.++-||- .+..+-+||..+.+....+..-. ....+..=-|+
T Consensus 213 ~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~PFyD 272 (472)
T KOG0303|consen 213 AHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLPFYD 272 (472)
T ss_pred cccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEeeec
Confidence 88754322221 234556444442 36789999987755443221100 00011222334
Q ss_pred CCCCEEEE-EecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCC
Q 001258 584 TTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDG 630 (1113)
Q Consensus 584 ~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~ 630 (1113)
++.+.++. |-.|+.|+-|.+....+ ++-+.......+-..+.|-|..
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 44445544 55799999999977653 3333333333445677777754
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.2e-17 Score=190.92 Aligned_cols=280 Identities=14% Similarity=0.178 Sum_probs=207.6
Q ss_pred cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCce----EEEeecCCeEEEEEccccccCCCCceeeeec
Q 001258 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 796 (1113)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 796 (1113)
+.+.++.+|.+........+..... .....+...++|.+.|.. |+.|..||.|.+|+...-.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------ 101 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------ 101 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence 4556777777765444432221111 114567788999988776 7778889999999875310
Q ss_pred CeecCCCCccccccccCCCCCCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCC
Q 001258 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 872 (1113)
Q Consensus 797 ~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~ 872 (1113)
.+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+....+. .....|.+++|+....
T Consensus 102 -------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 102 -------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred -------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 0111111111224999999999999876 888988 8999999998766555552 2456799999998778
Q ss_pred cEEEEEecCCcEEEEEcccceeeeeeccccc--CeEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCCccccccccccCC
Q 001258 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 946 (1113)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~L~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~ 946 (1113)
++||+++.+|.+.|||++..+.+-.+..|.+ .+..|+|+|+. ..|++++.|. .|.+||++...
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----------- 243 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----------- 243 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----------
Confidence 8999999999999999999888888877665 36789999986 4566666553 57888876511
Q ss_pred CCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecC
Q 001258 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 947 ~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~ 1025 (1113)
..++.+ .+|...|.++.|++.+ ++|++++.|+.|.+|+.+
T Consensus 244 -------------------------------------sP~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 244 -------------------------------------SPLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred -------------------------------------Cchhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 011122 2788999999999966 899999999999999999
Q ss_pred CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+++.+..+. .....+. .+.|.|.+...++..+-||.|-|+.+.+..
T Consensus 285 tgEvl~~~p-------~~~nW~f--dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELP-------AQGNWCF--DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecC-------CCCccee--eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999998875 3234444 599999999999999999999999998776
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=4e-18 Score=186.30 Aligned_cols=286 Identities=19% Similarity=0.263 Sum_probs=212.1
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
-+.||...|+|+.|...|.++++|++|..|+||...++.++. .+.||.+.|+.++.+.++. +++++|.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 478999999999999999999999999999999999998877 7999999999999998887 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
.+.++.++..+.||++.|++++|+|.. +.+.||++++||.+- ..+ .+.|.-.
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~~-------------~y~prp~-------- 311 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EPR-------------IYVPRPL-------- 311 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-ccc-------------ccCCCCC--------
Confidence 999999999999999999999987743 678899999998871 110 0111000
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
+..++ .-+.++.|...+.-+++++.|+.-..|...-.
T Consensus 312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---- 348 (1113)
T KOG0644|consen 312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL---- 348 (1113)
T ss_pred ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence 00000 11333444445556666776666555532110
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
T Consensus 349 -------------------------------------------------------------------------------- 348 (1113)
T KOG0644|consen 349 -------------------------------------------------------------------------------- 348 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
++...+-.+++...|
T Consensus 349 -----------------------~~~~~~lif~t~ssd------------------------------------------ 363 (1113)
T KOG0644|consen 349 -----------------------AWRSNLLIFVTRSSD------------------------------------------ 363 (1113)
T ss_pred -----------------------hhhccceEEEecccc------------------------------------------
Confidence 000000001111100
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 893 (1113)
...+.+++- +-.+.+|++.++...+.+.+|...+..+.++|.+.++..+++.||...|||+-.|.
T Consensus 364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 002233333 56788999999999999999999999999999778888899999999999999887
Q ss_pred eeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258 894 VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1113)
Q Consensus 894 ~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~ 936 (1113)
.++.. .+| +.+..-+||+||..++....-|.++|.....++.
T Consensus 430 pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 430 PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 76554 454 5566789999999999888889999987765543
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7e-17 Score=159.74 Aligned_cols=198 Identities=13% Similarity=0.184 Sum_probs=150.6
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEcc
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 450 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 450 (1113)
.+|++-..|.|++||..+++.+. .+.+|...++.+.|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888899999999999988776 3778888899999987 46778999999999999999
Q ss_pred CCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEec----CCCcEEEEeCCCCce-eeEe-eccCcCEEEEeeeecCCc
Q 001258 451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI 523 (1113)
Q Consensus 451 ~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 523 (1113)
+......+ .+.+|. .+..|++-.-.+. +++.|. .|-.|.+||++..+. ++.+ ..|.+.|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87665433 345565 4667777765666 577664 367899999997766 5544 56999999999999765
Q ss_pred eEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEE
Q 001258 524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1113)
Q Consensus 524 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 600 (1113)
++|++|+.||.|.++|+...... .....+...|..+.|..++- ..+.+.+..++..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 79999999999999999764322 12222334455555555441 34888899999999
Q ss_pred EECCCCceEEEEc
Q 001258 601 WDMDSVQLLTSID 613 (1113)
Q Consensus 601 wd~~~~~~~~~~~ 613 (1113)
|+++.+.+...+.
T Consensus 239 ~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 239 YELEDGSEETWLE 251 (376)
T ss_pred EEccCCChhhccc
Confidence 9999888665553
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=152.36 Aligned_cols=308 Identities=11% Similarity=0.149 Sum_probs=198.2
Q ss_pred eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1113)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1113)
++..+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..+. .|...|+.+...+. ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence 3457889999999999998886 8999999999999999999888888 56778888774432 478999999999
Q ss_pred EEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC-CcEEEEECCCCceEEEEcc
Q 001258 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 536 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~ 614 (1113)
.+|++.-...... +.-.++++.|.+..- +.+.... ...++.-++. ..+++-|......+.....
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEE---eeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence 9999875332221 112233333332110 0000000 0011111100 0122222222222221111
Q ss_pred --CCCCCCcCeEEECC-CC--CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccc
Q 001258 615 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 689 (1113)
Q Consensus 615 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1113)
....+.+.|..+.. ++ -++++|..+|.+.+||+.++.. +..+.....
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-~~~~~~~~k--------------------------- 196 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-IIQLPQSSK--------------------------- 196 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-eeccccccc---------------------------
Confidence 11123344444332 22 2567788899999999988722 222211000
Q ss_pred ccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEe
Q 001258 690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 769 (1113)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 769 (1113)
+ ..+...|..+|.++.|.+.-..=+.+
T Consensus 197 -----------------------------------------v------------~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 197 -----------------------------------------V------------ESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred -----------------------------------------c------------ccchhhccCcceeeeechhhcCCcCC
Confidence 0 01112378889999998776666777
Q ss_pred ecCCeEEEEEccccccCCCCceeeeecCeecCCCCccc-cccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECC
Q 001258 770 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 847 (1113)
Q Consensus 770 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~ 847 (1113)
+.+..+..|.++... |.+ +..+..- ..-.|..+.+-||++.+|+++ |+.||||+.+
T Consensus 224 ga~dkl~~~Sl~~s~--------------------gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 224 GADDKLVMYSLNHST--------------------GSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred Cccccceeeeecccc--------------------CcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 777778888775321 111 0000111 244578899999999999999 9999999999
Q ss_pred CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258 848 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 848 ~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~ 889 (1113)
+...+..+..|...|++++|+| +..++|.++.|++|-+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999 8889999999999999986
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.9e-17 Score=171.47 Aligned_cols=229 Identities=16% Similarity=0.280 Sum_probs=180.2
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEcc-----CCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 489 (1113)
.+..|.+.|+.++|.|-...|++++.||++.+|+++ ....+.++.+|++|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 577899999999999999999999999999999993 3345678889999999999999999999 799999999
Q ss_pred cEEEEeCCC------C----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC--CceE
Q 001258 490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT 557 (1113)
Q Consensus 490 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~ 557 (1113)
+|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... .++.... +...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 2234778999999999988776 4799999999999998876554 2222211 1112
Q ss_pred EEEEccCC--------C---------------eEEec------cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258 558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1113)
Q Consensus 558 ~~~~s~~~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1113)
++.+.... + .++.. .....+..+.++|.....+++..|+.|+++|..++..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22221110 0 11111 1123456688889999999999999999999999999
Q ss_pred EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.....| ...++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9888766 457999999999999999999999999988655
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=150.85 Aligned_cols=257 Identities=16% Similarity=0.250 Sum_probs=184.8
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecC-------CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
.|.++||.++-+|..+++|++...+ ..+.||.+........ .........+-..+-+.|.|+.|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---------~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---------SSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---------cchhhHhhcCCHHHhCceeeEEE
Confidence 3789999999999999889887653 2467888765432210 00111112222355669999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCcee-eeee--eeecccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 429 SPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 429 spdg~~las~~~d~~i~iwd~~~~~~~-~~~~--~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
.|++..||+-. |..|.+|++..+..+ .... .-.+|....++-+|+| |+. .+++.+ |+++..||+++.++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence 99999999876 778999999987652 1110 1123666788999998 565 455544 8999999999988877
Q ss_pred Ee-eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 504 IF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.+ ..|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|.-..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-------------- 272 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-------------- 272 (370)
T ss_pred chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce--------------
Confidence 66 46888999999988664 689999999999999998654 45678899999999999886542
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCc-----------------------------eEEEEccCCCCCCcCeEEECC-CCC
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DGC 631 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~~~ 631 (1113)
.+++|+.|..|.+|...+-. .+.++.. +...|.+++|+. |.-
T Consensus 273 ------LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 273 ------LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPW 344 (370)
T ss_pred ------EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCe
Confidence 46777778888777653211 1122332 345799999997 556
Q ss_pred EEEEEECCCcEEEEEcC
Q 001258 632 LLAVSTNDNGIKILATS 648 (1113)
Q Consensus 632 ~l~~~~~dg~i~iwd~~ 648 (1113)
++++-+.||.+.|=.+.
T Consensus 345 iFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccCceEEeecCC
Confidence 77888999999876543
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.8e-16 Score=152.72 Aligned_cols=228 Identities=17% Similarity=0.193 Sum_probs=177.3
Q ss_pred CCeEEEEECCCCce---eeeecCCCCCeeEEEEecCCCcEEEEEecC-------CcEEEEEccc---------ceeeeee
Q 001258 838 GGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSIQIYNVRV---------DEVKSKL 898 (1113)
Q Consensus 838 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~v~iwd~~~---------~~~~~~l 898 (1113)
|+.|.+.+++...- ...|..|.+.|..++-+|.+.++|++...+ -.+.||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 57888888765432 245677888999999999888899887653 2577998864 2344555
Q ss_pred c-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEEEcCCeE
Q 001258 899 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL 975 (1113)
Q Consensus 899 ~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~~d~~v 975 (1113)
. .+-+.|.++.|.|++..|++.. |..|.+|+++.+.............. .....++-+|+| ||..+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 4 4667999999999999999887 77899999998765322222111110 113567788998 8999999999999
Q ss_pred EEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEEeCCCcEEEEecCCC-ceeeecCCCcccCCCcccCccceEEE
Q 001258 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSNVHPLVIA 1053 (1113)
Q Consensus 976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~v~~i~~~ 1053 (1113)
..||+++..+...+. ++|...|..+.|.|+.++ |+++++||.|++||.... ..+..+. +|+..|+. +.
T Consensus 196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~HsHWvW~--VR 265 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GHSHWVWA--VR 265 (370)
T ss_pred EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CCceEEEE--EE
Confidence 999999998877766 488999999999998875 889999999999999654 3444444 99999995 89
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1054 AHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1054 ~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
|.|...+++++|+.|..|.+|...+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccc
Confidence 9998888999999999999998643
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=7.9e-18 Score=184.05 Aligned_cols=254 Identities=18% Similarity=0.307 Sum_probs=192.3
Q ss_pred cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
+.+.++++|...|.|+.|...|.| +++|+.|..|+||..+++.++. ...||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence 456678889999999999999997 9999999999999999998887 48999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE---e
Q 001258 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 505 (1113)
Q Consensus 429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~ 505 (1113)
+.+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999998776 78999999999999984 4788999999999871111111 1
Q ss_pred ec-cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 506 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 506 ~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
.. ....+.++.| ..++.-+.||+.|+.-..|.+...... ...+.-+..+.+
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd-------------------- 363 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD-------------------- 363 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence 11 1234444543 345567999999999888865421110 000000111111
Q ss_pred CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1113)
...+.+++-.+-.+++|++.+|...+.+.++.+ .+..+.++| +.+...+++.||...|||+-.|........+|.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 012456667788899999999999998887754 678899999 666777899999999999998844444444433
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.6e-16 Score=155.80 Aligned_cols=151 Identities=18% Similarity=0.274 Sum_probs=115.9
Q ss_pred EEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEE
Q 001258 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1113)
Q Consensus 481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 560 (1113)
.++++-..|+|++||..+|+.+..|+++...++.+.|........+.+++.||+|++||++.......+.....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~------ 115 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ------ 115 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC------
Confidence 57888889999999999999999999999999999987654556899999999999999998655443222211
Q ss_pred EccCCCeEEeccccCceeEEEecCCCCEEEEEe----cCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 634 (1113)
Q Consensus 561 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~ 634 (1113)
......+++.+-.++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus 116 ------------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 116 ------------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ------------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 122344444444555666665 477899999998776 44443 34567899999999 678999
Q ss_pred EEECCCcEEEEEcCCC
Q 001258 635 VSTNDNGIKILATSDG 650 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1113)
+|+.||.|.++|+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998644
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1e-15 Score=153.14 Aligned_cols=166 Identities=16% Similarity=0.233 Sum_probs=123.7
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC------CceeeEee-ccCcCEEEEeeeecCCceEEEEEecC
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 532 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d 532 (1113)
.+.+|.+.|+++.|+.+++ +|++|+.|..+++|+++. .+++.... .|...|.|++|.... ..+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCc
Confidence 5678999999999999988 899999999999999863 35555443 356899999986433 789999999
Q ss_pred CcEEEEEcCCCCCeeeeeCCC--CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eE
Q 001258 533 GKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LL 609 (1113)
Q Consensus 533 g~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~ 609 (1113)
++|..-|+++.+.+..+.... +.|.. +..+|..+.+++.+.++.|.+||.+... .+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~---------------------m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYH---------------------MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceee---------------------cccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 999999999866555433221 23444 4455556679999999999999998755 33
Q ss_pred EEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258 610 TSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
..+-..........+.|+| ...+|++.+..+-+.+||....
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 2222222233567889999 4567888888888999998655
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.1e-15 Score=171.84 Aligned_cols=320 Identities=16% Similarity=0.238 Sum_probs=216.9
Q ss_pred CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc---CcCEEEEee
Q 001258 441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCP 517 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~ 517 (1113)
+..|..||... ..+....-..+.|+|-.. .++++...-.|+|||.+.++++..|..+ ...|+.+++
T Consensus 1049 t~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL 1117 (1387)
T ss_pred cccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee
Confidence 34466777543 122333556778888888 5888887789999999999998888654 367888888
Q ss_pred eecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258 518 HHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1113)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 596 (1113)
-...|..++++|+.||.|++|+--... ....+...-..+..+...+.| .. .+++|.....+|+++++-.
T Consensus 1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~---------~~-~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG---------TG-LVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC---------CC-eeeehhhhCCeEEecCCee
Confidence 777777899999999999999643321 111111111111111111111 12 5678888878888888899
Q ss_pred cEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258 597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1113)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1113)
.|+|||......+..+..... ..|++++-+. .|+.+++|..||.|++||.+.....
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------- 1244 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------- 1244 (1387)
T ss_pred EEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc----------------------
Confidence 999999998888877765433 3466665544 5799999999999999997654110
Q ss_pred ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc--
Q 001258 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK-- 753 (1113)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-- 753 (1113)
.-|.+|.- |...
T Consensus 1245 ------------------------------------------------s~v~~~R~------------------h~~~~~ 1258 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYRE------------------HNDVEP 1258 (1387)
T ss_pred ------------------------------------------------ccceeecc------------------cCCccc
Confidence 11222221 2222
Q ss_pred eEEEEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 754 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 754 i~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
|..+.+-+.|-. |++++.+|.|++||+...... ........- ...+..+++..++....
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------------~~~~iv~~~-~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------------TFLTIVAHW-EYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------------ccceeeecc-ccCccceeeeeccCCCe
Confidence 777888776654 999999999999998753110 000000000 01235899999999999
Q ss_pred EEEEeCCeEEEEECCCCceeeeecC-------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 833 VMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus 1319 iAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999864 33333322 235689999999 7788999999999999987654
No 189
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-14 Score=157.68 Aligned_cols=602 Identities=12% Similarity=0.096 Sum_probs=337.8
Q ss_pred CCCCcceeEecc-CCCCcEEEEEcCC-----------CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccc
Q 001258 345 EDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ 412 (1113)
Q Consensus 345 ~~~~~~~~~~~~-h~~~V~~~~~spd-----------g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1113)
|...-+..+.+. |...|+.+.|.|- .+.+||++...|.|.+||+..+..+.
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~----------------- 103 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN----------------- 103 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-----------------
Confidence 333455566666 8899999999763 34478888889999999999887654
Q ss_pred cccccCCCcceEEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258 413 AALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1113)
Q Consensus 413 ~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 488 (1113)
-+..|.++|..++|-+ +. ..|++-....+|.+|+..+|+.+. ....-.....|+.+.|-+...+.+.| ..
T Consensus 104 --~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~-s~ 177 (1062)
T KOG1912|consen 104 --WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLG-SK 177 (1062)
T ss_pred --hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEc-cC
Confidence 3677888999999976 44 456666777899999999998665 34444456778999987665344444 45
Q ss_pred CcEEEEeCCC-------CceeeEeeccCc------------CE-----------EE--EeeeecCCceEEEEEecCCcEE
Q 001258 489 KTIKVWDATN-------GAKQYIFEGHEA------------PV-----------YS--VCPHHKENIQFIFSTALDGKIK 536 (1113)
Q Consensus 489 ~~i~iwd~~~-------~~~~~~~~~h~~------------~v-----------~~--~~~~~~~~~~~l~s~~~dg~i~ 536 (1113)
|.+.+-+.-. |+..+.-..|.+ .+ .+ ++|+|.. .-++-......+.
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~prell 255 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFPRELL 255 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEeccceE
Confidence 6665655321 222222222222 00 11 1233333 2344445577789
Q ss_pred EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-----------
Q 001258 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------- 605 (1113)
Q Consensus 537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 605 (1113)
++|++-..+......+.+.+.-+.+-|++++ ..|+++-.+|.+.+|-.+.
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchh
Confidence 9999887777777777777777777777663 2488888999999997654
Q ss_pred -----CceEEEEccCCCCCCcCeEEECCC-CCEEEEEECCCcEEEEEcCCCccceecccccccccccc---------CCC
Q 001258 606 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SEN 670 (1113)
Q Consensus 606 -----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~ 670 (1113)
++....+..-... ........|. ...++.--.+|.+.+|.+.++........+........ ...
T Consensus 317 l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred hccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 2222222211111 1223333443 44555556678888999887622211111111100000 000
Q ss_pred CCCCcccchhhhhhhhcccccccccccccc--cC-CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258 671 SKPTISPISAAAAAAATSAGLADRAASMVS--IP-GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1113)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1113)
....++.++. -.....+.+..|+.. .. +..+.......-..++.|...|+|.++|+.+......+.
T Consensus 396 ~l~~LS~dg~-----h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs------ 464 (1062)
T KOG1912|consen 396 SLISLSDDGS-----HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS------ 464 (1062)
T ss_pred cccchhhcCC-----CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc------
Confidence 0001111110 000111112222111 11 111111122233567899999999999998754433332
Q ss_pred ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s 827 (1113)
.|...|.++.|......+-.++.. .. +........+.+-|+.+|.-....-...+.+.+|+.+..|
T Consensus 465 -vht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS 530 (1062)
T KOG1912|consen 465 -VHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVS 530 (1062)
T ss_pred -ccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeec
Confidence 388899999998777744333321 00 0000011123455666776444322223467899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEe-cCCC----------------cEEEEEecCCcEEEEEc
Q 001258 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~d~----------------~~la~g~~dg~v~iwd~ 889 (1113)
..++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .- +..+..+ +..+++.+
T Consensus 531 ~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~ 607 (1062)
T KOG1912|consen 531 SSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHI 607 (1062)
T ss_pred ccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheeh
Confidence 9999999997 8889999999888776655444558899998 3 11 1223233 23333333
Q ss_pred cc-------ceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258 890 RV-------DEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1113)
Q Consensus 890 ~~-------~~~~-~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 961 (1113)
.- +... ...+...-.+..++| .+..|+.|..+|.+.+||+....... ....+... .......+-
T Consensus 608 ~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~~r----a~~l~~~~i 679 (1062)
T KOG1912|consen 608 TLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPDPR----AHSLTFPQI 679 (1062)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCCch----hhheecccC
Confidence 21 1110 011111123344667 46789999999999999986632111 11111110 112233334
Q ss_pred cCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
|....+++-....+.+||.+..+.+..+.....+-.+..+.+......++ ..|.++|+-.+.....
T Consensus 680 pG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 680 PGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP 745 (1062)
T ss_pred CCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence 54445555566678899988887777664222233455555544443333 3344777766654433
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.1e-15 Score=148.01 Aligned_cols=397 Identities=13% Similarity=0.162 Sum_probs=236.0
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 504 (1113)
-++|||+|+|+|+++.- .+.|=|..+-+..+ +----+.|..+.|..|.-+ .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 67788887755433 1122457899999998875 566778899999999999888888
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
+.....++.+++|+|++. ..|.+...|-.|.+|.+.+.... .+.-+...+..++|.+||+
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~------------------ 146 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQ------------------ 146 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCc------------------
Confidence 888889999999987543 56777788999999999874432 2333334456666666665
Q ss_pred CCCEEEEEecCCc---EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258 585 TKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1113)
Q Consensus 585 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1113)
+.+..+.-.. +.+.....-..+..+... +-..+.+.|+|||..|++ ||.--..+
T Consensus 147 ---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d--T~DltgieWsPdg~~laV---------wd~~Leyk--------- 203 (447)
T KOG4497|consen 147 ---FCAILSRRDCKDYVQISSCKAWILLKEFKLD--TIDLTGIEWSPDGNWLAV---------WDNVLEYK--------- 203 (447)
T ss_pred ---eeeeeecccHHHHHHHHhhHHHHHHHhcCCC--cccccCceECCCCcEEEE---------ecchhhhe---------
Confidence 4444443211 112111222233334333 335678999999987764 54211100
Q ss_pred ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1113)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1113)
|..|.
T Consensus 204 ----------------------------------------------------------------v~aYe----------- 208 (447)
T KOG4497|consen 204 ----------------------------------------------------------------VYAYE----------- 208 (447)
T ss_pred ----------------------------------------------------------------eeeee-----------
Confidence 00000
Q ss_pred ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1113)
Q Consensus 742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v 821 (1113)
..-.+..+.++|.++++++|+.|+.+||.+--+-+ +-++...-.. +-|+... ++..+.. ....-..
T Consensus 209 --------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk--~f~eflhl~s--~~dp~~~-~~~ke~~-~~~ql~~ 274 (447)
T KOG4497|consen 209 --------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK--PFGEFLHLCS--YHDPTLH-LLEKETF-SIVQLLH 274 (447)
T ss_pred --------eccceeEEEeccccceEEeeccchhhhhhceeeee--ehhhhccchh--ccCchhh-hhhhhhc-chhhhcc
Confidence 22356778899999999999999888874421100 0000000000 0000000 0000000 0001112
Q ss_pred cEEEEecCCCEEEEEeCCeEEEEECC-------CCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--CcEEEEEcccc
Q 001258 822 PCFALSKNDSYVMSASGGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVD 892 (1113)
Q Consensus 822 ~~l~~s~~~~~l~~~sdg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d--g~v~iwd~~~~ 892 (1113)
.++.|.|..-- +.-....-.+|... ..+....+......+.-++|++ |..++|+-.+. ..+.+||+...
T Consensus 275 ~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l 352 (447)
T KOG4497|consen 275 HCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNL 352 (447)
T ss_pred cccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhh
Confidence 34444443210 00000000112111 1111222233345678899999 88888876533 47999999987
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~ 971 (1113)
++...+. ...+|.+..|.|....|+.+.....+++|...... +...+... ..|..+.|..+|..++..+
T Consensus 353 ~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~-----~V~vP~~G----F~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 353 KLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-----VVGVPKKG----FNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred hhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-----EEecCCCC----ceeeeEEecCCCcEEEEEc
Confidence 7655553 45679999999999999888877789999887622 22222211 3689999999999988743
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=4.8e-15 Score=164.33 Aligned_cols=275 Identities=10% Similarity=0.118 Sum_probs=176.0
Q ss_pred eeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeee
Q 001258 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV 795 (1113)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1113)
.++...++.|.+|++...........+. .......++++|+++.|++++. ++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 3455678999999996422112222221 2345678899999998877654 68888888741
Q ss_pred cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cc---eeeeecCCCCCeeEEEEec
Q 001258 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 869 (1113)
Q Consensus 796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~s~ 869 (1113)
+|.+..... .........++++|++++++++. ++.|.+|++++ +. .+..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223456899999999999887 78999999974 22 222222 234467789999
Q ss_pred CCCcEEE-EEecCCcEEEEEcccceeee-------eecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--cccc
Q 001258 870 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK 938 (1113)
Q Consensus 870 ~d~~~la-~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~--~~~~ 938 (1113)
++++++ +...++.|.+||+.+...+. .... ......++|+|||++|++++. +++|.+|+++.. +...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 777665 45567999999997633221 1111 234678999999999988876 899999999742 2111
Q ss_pred ccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc----eeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 939 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
...................+.++|+|++++++ .++.|.+|++.... .+..... ......+.|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11111111111111123468899999999996 46789999985432 2222221 234567899999999998
Q ss_pred EeC-CCcEEEEecC
Q 001258 1013 CFL-DATVCVFSAA 1025 (1113)
Q Consensus 1013 ~~~-Dg~v~vwd~~ 1025 (1113)
++. +++|.+|+++
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 775 8999999874
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=3.7e-14 Score=157.21 Aligned_cols=272 Identities=11% Similarity=0.149 Sum_probs=175.2
Q ss_pred EEEEecCCcEEEEECCC-Cc--eEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCCccceeccccccccc
Q 001258 589 FLAAGDDFSIKFWDMDS-VQ--LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDA 664 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1113)
+++...++.|++|++.+ ++ .+..+... .....++++|++++|++++ .++.|.+|++... ..+.....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~----- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAE----- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeee-----
Confidence 34456789999999964 33 34444322 3467899999999987765 4778888887521 11110000
Q ss_pred cccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecc
Q 001258 665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 744 (1113)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 744 (1113)
..
T Consensus 76 ------------------------------------------------------------------------------~~ 77 (330)
T PRK11028 76 ------------------------------------------------------------------------------SP 77 (330)
T ss_pred ------------------------------------------------------------------------------ec
Confidence 00
Q ss_pred cCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 745 LPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 745 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
.......++++|+++.+++++. ++.+.+|++..... . ...... .. +...+.+
T Consensus 78 -----~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~-------------~~~~~~-~~---~~~~~~~ 130 (330)
T PRK11028 78 -----LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----P-------------VAPIQI-IE---GLEGCHS 130 (330)
T ss_pred -----CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----C-------------CCceee-cc---CCCcccE
Confidence 1123457899999998888765 68999998752110 0 000000 01 2234677
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceee-------eecCCCCCeeEEEEecCCCcEEEEEec-CCcEEEEEccc--
Q 001258 824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMA-------TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRV-- 891 (1113)
Q Consensus 824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~-------~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~iwd~~~-- 891 (1113)
++++|++++++++. ++.|.+||+.+...+. ... .......++|+| ++++++++.. ++.|.+|++..
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCC
Confidence 89999999998776 6999999997633221 111 123467899999 8888887776 89999999973
Q ss_pred c--eeeeeecccc------cCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258 892 D--EVKSKLKGHS------KRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1113)
Q Consensus 892 ~--~~~~~l~~h~------~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 962 (1113)
+ +.+..+..+. .....+.++||+++|+++.. ++.|.+|+++..............+ .....+.++|
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-----~~p~~~~~~~ 283 (330)
T PRK11028 209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-----TQPRGFNIDH 283 (330)
T ss_pred CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-----ccCCceEECC
Confidence 3 3344443221 12346889999999998864 7899999996543211111111112 2346789999
Q ss_pred CCcEEEEE--cCCeEEEEeCC
Q 001258 963 DQIHFLVV--HETQLAIFETT 981 (1113)
Q Consensus 963 dg~~l~~~--~d~~v~v~d~~ 981 (1113)
||++|+++ .++.|.+|+++
T Consensus 284 dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEc
Confidence 99999984 47899999874
No 193
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=164.98 Aligned_cols=320 Identities=16% Similarity=0.203 Sum_probs=231.2
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
.|.+|.+.|+.|.|...|. .+++||.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999998887766 578888888788888777899999999999988
Q ss_pred EcCCCCCee---eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC
Q 001258 539 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1113)
Q Consensus 539 d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1113)
.+...+... .+..|.++|..++.-|+.. ..|++++.|+.+.-+|++.+.....+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 776544332 3455666777777777654 24889999999999999887655444322
Q ss_pred CC-C---CCcCeEEECCCC-CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccc
Q 001258 616 GG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690 (1113)
Q Consensus 616 ~~-~---~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1113)
.. . -....++..|.. ..+++++.|..+++||...-.+. ...+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence 11 1 245678888854 48999999999999986533110 0000 000 111110
Q ss_pred cccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEee
Q 001258 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 770 (1113)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 770 (1113)
+. ......|++++|+.++.-++++.
T Consensus 331 -------------------------------------------------l~------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 -------------------------------------------------LV------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred -------------------------------------------------cc------ccCcccceeEEecCCccceeeee
Confidence 00 01456799999999998899999
Q ss_pred cCCeEEEEEccccccC-CCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE-ecCCCEEEEEeC-CeEEEEECC
Q 001258 771 SNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM 847 (1113)
Q Consensus 771 ~dg~i~vw~~~~~~~~-~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~sd-g~i~vwd~~ 847 (1113)
.|-.|+++.-..+... ++... ++ .......+++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s-----~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSS-----PR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred cccceEEeccccccCCCCCCCc-----ch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 9999999854432210 00000 00 0122222445334556778875 488899999996 999999999
Q ss_pred CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 848 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 848 ~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
+++.++-+.+...-|+|+.-+| ---+||+.+-|..|+||.-.+.
T Consensus 425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence 9999999888777899999888 5679999999999999986443
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.6e-15 Score=169.90 Aligned_cols=260 Identities=20% Similarity=0.263 Sum_probs=190.2
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
..+.-...|.|+.|+|....++|.|+.+|.|.+||+..+..... .........|..+|+.+.|-.+-
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccC
Confidence 55567899999999999998999999999999999988765210 11112456899999999998754
Q ss_pred Ce--EEEEeCCCeEEEEEccCCceeeeeeeee---------cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---C
Q 001258 433 SL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N 498 (1113)
Q Consensus 433 ~~--las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~ 498 (1113)
.- +++++.||.|..|+++.-........+. .-...+++++|.+.... .|+.|+++|.|.--+-. .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence 44 9999999999999876432211100111 12236899999998777 78999999998773322 2
Q ss_pred Cc-----eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC-CCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
+. .+..+..|.++|.++.++|-.. ..+.+++ |.++++|.-. ...+...+..+...+.+++|||-...
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa----- 455 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA----- 455 (555)
T ss_pred cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-----
Confidence 22 1335567899999999877654 3445555 9999999887 55556666666666888888876542
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.++++..+|.|.+||+..... +...... ....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 456 ---------------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 ---------------VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---------------EEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 478888999999999976443 3333333 445678889999999999999999999998654
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=8.2e-15 Score=147.00 Aligned_cols=241 Identities=13% Similarity=0.191 Sum_probs=181.6
Q ss_pred CCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccceee
Q 001258 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1113)
...+..+.|..+...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456667788999999999966678888876554333333444577777875 4777666554 5999999988888
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E--cC
Q 001258 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 972 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~--~d 972 (1113)
..+. ....|.++.+. .++|+++=.+. |+|||+++-+. +.......+....+..+.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 45678899885 45676666555 99999998543 3222222221124555556666779998 3 56
Q ss_pred CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
|.|.+||+.+.+.+..+. .|.+++.+++|++||.+||++++.|+ ||||.+.+|+.+..|+-..+ .+.-..
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------eeEEEE
Confidence 899999999999988887 89999999999999999999999998 89999999999998873222 333335
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1052 IAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1052 ~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
++|+| |+.+|++.++.++|++|.++...
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 99999 78999999999999999998766
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.9e-15 Score=151.24 Aligned_cols=306 Identities=8% Similarity=0.052 Sum_probs=208.3
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccC------CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 488 (1113)
-+.+|.+.|+++.||.++++||+|+.|..++||++.. .+.+.. .-..|...|.|++|...++ ++.+|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~--~~~~H~SNIF~L~F~~~N~--~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV--MEHPHRSNIFSLEFDLENR--FLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee--ccCccccceEEEEEccCCe--eEecCCCc
Confidence 4779999999999999999999999999999999863 232321 1124668999999998888 79999999
Q ss_pred CcEEEEeCCCCceeeEeec--cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258 489 KTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1113)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 566 (1113)
++|...|+++.+.+..+.. ..+.|..+..+|.. +.+++.+.+|.|.+||.+...... .-++....++
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~---------~~~~~AN~~~ 195 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPI---------SLVLPANSGK 195 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCC---------ceeeecCCCc
Confidence 9999999999998887752 34589999988874 689999999999999998643211 1111111111
Q ss_pred eEEeccccCceeEEEecCCCC-EEEEEecCCcEEEEECCCCc-eEEEEc----cCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258 567 RTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQ-LLTSID----ADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1113)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg 640 (1113)
.+..+-|+|... .|++.+..+-+.+||.+... .+.... .......-.++.|+|+|+.+.+--...
T Consensus 196 ---------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 196 ---------NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred ---------cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 334455565543 46677888899999986532 111111 111111235789999999888776666
Q ss_pred cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeec
Q 001258 641 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 720 (1113)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 720 (1113)
.-.+||+.+..-.+..+. |...... ..-.....++.+...+++|
T Consensus 267 ~P~~~D~~S~R~~V~k~D-~N~~GY~-----------------------------------N~~T~KS~~F~~D~~v~tG 310 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSD-HNPNGYC-----------------------------------NIKTIKSMTFIDDYTVATG 310 (609)
T ss_pred CCEEeeeecccceeEecc-CCCCcce-----------------------------------eeeeeeeeeeecceeeecc
Confidence 666777766422222221 1110000 0001112234455668899
Q ss_pred cCCCceeeEeccCCCCCCcceeccc----------------CcccccCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258 721 ESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1113)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~ 780 (1113)
+.+=.|.+|.++.......+..+.- ...+|..-+..+.|+|...+|++.+-.+.+++|.-
T Consensus 311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 9999999999986554333222111 11568888999999999999999999999999964
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3e-16 Score=162.29 Aligned_cols=306 Identities=11% Similarity=0.144 Sum_probs=224.5
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1113)
+|.+.|+.|.|...|. +|++|+.|..|.+|||..++.... ...||...|..-.|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 4999999999999999 599999999999999999887654 4678999999999988 567
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee---ccCc
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEA 510 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h~~ 510 (1113)
.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++.+.+...+. .+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999877654444444567789999999999999887 79999999999999999876554332 2333
Q ss_pred ---CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 511 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 511 ---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
...+++..|... ..+++|+.|..+++||.+....... .+.+. .|.|+ .+.....-.|.+++|+.++.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCCcc
Confidence 456677766543 5899999999999999875332210 00000 11111 01112223566677776666
Q ss_pred EEEEEecCCcEEEEECCC--C----------ceEEE-EccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 588 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
-+++...|-.|++++-.- | ..+.. +++|.....|..+-| .|...++++|+.-|.|.||+-.++ +.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence 788888888999996432 2 12223 667766667888875 578899999999999999999888 77
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
++.+++....+.+. .--|.-..|++.+.|..|+||.-.+
T Consensus 429 i~~MegDr~VVNCL-----------------------------------------EpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 429 IRFMEGDRHVVNCL-----------------------------------------EPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHHhhcccceEecc-----------------------------------------CCCCCCchhhccCCccceeeecCCc
Confidence 77777655433221 1124467789999999999998744
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5e-15 Score=166.64 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=150.1
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---eeeee
Q 001258 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSK 897 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~ 897 (1113)
-+.|.....+|++++ -..|+|||.....+...+... ..-++++.-+...|+++++|..||.|++||.+.. ..+..
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 345665555555555 578999999987777766533 3457777766656899999999999999998753 35677
Q ss_pred ecccccC--eEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258 898 LKGHSKR--ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1113)
Q Consensus 898 l~~h~~~--V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~ 974 (1113)
.+.|++. |..+.+-+.|-. |++|+.||.|++||++..... ....+.. +....+..+++..+++...+|+|+-+.
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e--~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE--TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc--ccceeee-ccccCccceeeeeccCCCeeeecCcce
Confidence 8889988 999999887654 999999999999999884221 1222211 111112489999999999999987799
Q ss_pred EEEEeCCccceeeccccC-----CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258 975 LAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus 975 v~v~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
|.||++... .+..+... -..+.+.|++|.|..-+||+|+.|.+|.||......
T Consensus 1327 ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999998743 33333221 125678999999999999999999999999887654
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.5e-15 Score=140.37 Aligned_cols=253 Identities=15% Similarity=0.189 Sum_probs=173.3
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
.|.+-++||.+++ |++|..+|+|.+..+.+--.-.. ............+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 4566789999995 99999999999999864211110 001111112357999999999997 56777776
Q ss_pred CCCeEEEEEccCCce---eeeeee--eeccc-----CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258 440 SRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
||.|+=|....-.. .++..+ ...|. -.|+++-..|... -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111001 11222 3589999998877 36666689999999999999999999999
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
+.|.++.-. .....+++|+.||++++||.++.+....+..-.++- ..-|+ -. -+..++.-+..++
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~--------~g--~wigala~~edWl 221 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPD--------WG--KWIGALAVNEDWL 221 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChh---hcCcc--------cC--ceeEEEeccCceE
Confidence 999999842 222579999999999999999987776554322110 00111 11 1223333444567
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
++|+ ...+.+|++++.++...+....+ +..+.|.. ..+++++..+.+.-|.+.
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence 7665 56899999999999888876644 66677754 467777777788888664
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.4e-16 Score=165.19 Aligned_cols=246 Identities=16% Similarity=0.225 Sum_probs=182.9
Q ss_pred CCCCccEEEEecCCCEEEEEe-CCeEEEEECC--------CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--------~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw 887 (1113)
|...|++++|.+-...|++++ ||+|.+|+++ ..+.+.+|++|.++|.|+++++ .+..+.+|+.||.|+.|
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence 888999999999999999999 9999999993 2346788999999999999999 89999999999999999
Q ss_pred Ecccc----------eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258 888 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1113)
Q Consensus 888 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1113)
++... .....+.||.+.|+.+++|+....|++++.||+|++|+....... .......+ +....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~---~f~~~~e~----g~Pls 444 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC---TFGEPKEH----GYPLS 444 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc---ccCCcccc----CCcce
Confidence 76421 234678899999999999999999999999999999998774431 11111111 12234
Q ss_pred EEEccCC-cEEEE-EcCCeEEEEeCCccceeeccccCCC-----CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258 958 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus 958 ~~~spdg-~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
+.+-... ...++ ..-+.--+++...+..+..+....- ...+..+.+.|.+.+.+++-.|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 4443322 11111 1222222334444444333332111 245777888999999999999999999999999999
Q ss_pred eecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1031 CRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1031 ~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
.... .|-..+++ +++.| +|-+|++++.||.+++|++....
T Consensus 525 ~s~~-------a~~~svts--lai~~-ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMV-------AHKDSVTS--LAIDP-NGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hhee-------eccceecc--eeecC-CCceEEeecCCceeehhhccchh
Confidence 7765 66677776 66667 67899999999999999986544
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=5.2e-13 Score=151.85 Aligned_cols=151 Identities=17% Similarity=0.312 Sum_probs=125.1
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
+.++++.-| +++|+.-+.|++|++...+.-. .+.||.+.|.++.||-||+++++.|+|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 9999999999999987322211 38899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCC
Q 001258 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN 522 (1113)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 522 (1113)
+++|++.+.+... .+.-+|+.+|+.++|.|+ . ++|++.|.+.++|+ ..+..+..+.+|. ..|+.++... +
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G 269 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence 9999999988765 256689999999999998 4 99999999999997 4566666888886 5678887644 3
Q ss_pred ceEEEEEecCCcEEEEEcCCC
Q 001258 523 IQFIFSTALDGKIKAWLYDNL 543 (1113)
Q Consensus 523 ~~~l~s~~~dg~i~iwd~~~~ 543 (1113)
...++|++.|+.+++||+...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 378999999999999998753
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.9e-14 Score=137.96 Aligned_cols=244 Identities=15% Similarity=0.226 Sum_probs=175.7
Q ss_pred CCCCccEEEEecCCC----EEEEEeCCeEEEEECCCC--cee--eee-----cCCCCCeeEEEEecCCCcEEEEEecCCc
Q 001258 817 PEEAVPCFALSKNDS----YVMSASGGKISLFNMMTF--KTM--ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS 883 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~----~l~~~sdg~i~vwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~ 883 (1113)
|..+++.+-|.|+.+ -+++.++..+|+|.+... +.. ..+ ..+..++++..|+..+.+++.+.+-|-+
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 889999999999874 244445678999998732 111 111 2345689999999888899999999999
Q ss_pred EEEEEcccce---eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258 884 IQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1113)
Q Consensus 884 v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 959 (1113)
..|||+.++. +...+-+|...|..++|..++ +.+||+|.||.||++|++.-+-. ..+ .++. .+..+...++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TII--YE~p-~~~~pLlRLs 249 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TII--YEDP-SPSTPLLRLS 249 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEE--ecCC-CCCCcceeec
Confidence 9999999863 457788999999999999865 57899999999999999884321 111 1111 1124677888
Q ss_pred Ecc-CCcEEEE-E-cCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 960 FHQ-DQIHFLV-V-HETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 960 ~sp-dg~~l~~-~-~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
|++ |-.++|+ . ....|.+.|++... .+..+ .+|.+.|..++|.|.. ..|.++++|..+-+||+...-.-....
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 887 4557777 4 44579999987543 23333 4899999999999965 579999999999999997643311111
Q ss_pred C-CcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258 1035 P-SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus 1035 ~-~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
+ -+| ...++|.. +.|+|..+++++.+. ++++.+
T Consensus 328 Pilay---~a~~EVNq--i~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 328 PILAY---TAGGEVNQ--IQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred chhhh---hccceeee--eeecccCCCEEEEEe-cCeeeE
Confidence 1 122 23456775 888888889998876 344444
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.3e-13 Score=136.76 Aligned_cols=228 Identities=17% Similarity=0.197 Sum_probs=153.7
Q ss_pred CCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC---CCCeeEEEEecCCCcEEEEEe--cCCcEEEEEccc
Q 001258 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP---PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV 891 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~ 891 (1113)
....|.++.+ +.+.|++.-.+.|.|||+++.+.+.++... ...+.++.++. ++.+||.=+ ..|.|.|||+.+
T Consensus 86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 4566777777 566788887777999999999999887543 34455666665 566888643 568999999999
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
-+.+..+..|.+.+.+|+|+++|.+|||+|.-|+ |||+.+.+++.
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k---------------------------------- 208 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK---------------------------------- 208 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----------------------------------
Confidence 9999999999999999999999999999999887 46777765432
Q ss_pred cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC--------------C
Q 001258 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP--------------S 1036 (1113)
Q Consensus 971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~--------------~ 1036 (1113)
+.+|..+--...|.+++|+||+.+|++.+..++|.||.+++-..-..-.+ .
T Consensus 209 ---------------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~ 273 (391)
T KOG2110|consen 209 ---------------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAAT 273 (391)
T ss_pred ---------------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhh
Confidence 22222111134678889999999998888889999998865331100000 0
Q ss_pred cccCCCc----------------ccCccceEEEEeC-CCCCEEEEEeCCCcEEEEeccCC--CccccCCCCCCCCCCCCC
Q 001258 1037 AYLPAGV----------------SSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLES--EGKWGVPPPVDNGSTSSM 1097 (1113)
Q Consensus 1037 ~~~~~gh----------------~~~v~~i~~~~~p-~d~~~l~s~~~Dg~v~vW~~~~~--~~~~~~~~~~~~~~~~~~ 1097 (1113)
.|+|..- .+.... .+++.+ ....++..++.||.++.+.++-. .+.+-+.+-+-.++..+.
T Consensus 274 sylps~V~~~~~~~R~FAt~~l~~s~~~~-~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~ 352 (391)
T KOG2110|consen 274 SYLPSQVSSVLDQSRKFATAKLPESGRKN-ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTS 352 (391)
T ss_pred hhcchhhhhhhhhccceeEEEccCCCccc-eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccccc
Confidence 0111100 001111 122322 24578888999999999988653 355555555545544444
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=2.6e-14 Score=163.78 Aligned_cols=212 Identities=11% Similarity=0.107 Sum_probs=150.7
Q ss_pred cccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCC----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 489 (1113)
.+..|...|..++.++.. .++++||.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 478899999999998854 99999999999999998631 22333345555677899999999999 688889999
Q ss_pred cEEEEeCCC--Cce-----eeEeecc-CcCEEEE-eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEE
Q 001258 490 TIKVWDATN--GAK-----QYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTT 558 (1113)
Q Consensus 490 ~i~iwd~~~--~~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~ 558 (1113)
.|++.++.. .+. .+....+ .+.+.++ ++........++.+..-+.|..||++.......+. ...+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG---- 1196 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG---- 1196 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc----
Confidence 999999875 221 1222222 2334443 33322222378888899999999998765544332 2233
Q ss_pred EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC---CCEEEE
Q 001258 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAV 635 (1113)
Q Consensus 559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~ 635 (1113)
.++.++.+|.+++++.|+..|.+.+||++-+.++.......+ ..+..+..+|- ....++
T Consensus 1197 -----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1197 -----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred -----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEE
Confidence 444555555666899999999999999999999888875554 56777777662 244444
Q ss_pred EE--CCCcEEEEEcCCC
Q 001258 636 ST--NDNGIKILATSDG 650 (1113)
Q Consensus 636 ~~--~dg~i~iwd~~~~ 650 (1113)
++ ..+.|.+|++.+|
T Consensus 1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ecccCCCceeeeecccC
Confidence 44 4678999999988
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=1e-14 Score=141.12 Aligned_cols=252 Identities=16% Similarity=0.257 Sum_probs=184.7
Q ss_pred ccCCCCcEEEEEcCCCC----eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 355 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~----~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+.|.-+++.+.|.|+.+ .|||+. +..+++|.+...+..... ...+....-..+.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccccc
Confidence 57999999999999873 357764 458999998753222110 01111112445778999999998
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---e
Q 001258 431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E 506 (1113)
Q Consensus 431 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~ 506 (1113)
|-++|.+++-|-+..|||++++..-.....|-+|...|..|+|...+.+ +|++.|.||+||++|++.-+--..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 8889999999999999999997442222357799999999999998887 8999999999999999865432222 2
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCC-cEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
....+...++|+.. |-+++++-..|. .|.+-|++... ....+..|...|..++|.|...
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------ 300 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------ 300 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence 22456777888654 446888887765 58999998754 4557889999999999999775
Q ss_pred CCCEEEEEecCCcEEEEECCCCce------EEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEE
Q 001258 585 TKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 644 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 644 (1113)
..+++++.|..+.+||+.+.-. +..+. ...+|+.+.|++ .+..++++.. +.+.+
T Consensus 301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 3589999999999999976322 22222 234799999997 5667777665 44444
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=2.3e-14 Score=160.75 Aligned_cols=286 Identities=14% Similarity=0.150 Sum_probs=194.2
Q ss_pred CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce--eeE----eeccCcCEEE
Q 001258 441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYS 514 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~ 514 (1113)
++.+.||+++...... ..+ .-...|.|++|+|.... +++.|..+|.|.+||++.+.. ... ...|..++..
T Consensus 221 ~~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 3479999999863222 233 34668999999999887 789999999999999987655 222 2358889999
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
+.|..+..+.-+++++.||.|..|+++......... + ...
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~--------------------------------------~-~~~- 336 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL--------------------------------------L-LES- 336 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhc--------------------------------------c-ccc-
Confidence 988776655568888889999999766422211000 0 000
Q ss_pred CCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCC
Q 001258 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 673 (1113)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1113)
.. ..+ ... .....+++++|.+ +-..+++|+.+|.|.--+.........
T Consensus 337 --~~-----~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------ 385 (555)
T KOG1587|consen 337 --KK-----HKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------ 385 (555)
T ss_pred --cc-----ccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------------------
Confidence 00 000 000 1123467888888 567788999998876532211100000
Q ss_pred CcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc
Q 001258 674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753 (1113)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1113)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE-
Q 001258 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY- 832 (1113)
Q Consensus 754 i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~- 832 (1113)
+.|.+... . ..|.+.|+++.++|-+..
T Consensus 386 ---~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 386 ---VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ---cccccccc-----------------------------------------------c--cccCcceEeeecCCCccce
Confidence 00000000 0 016777888888887654
Q ss_pred EEEEeCCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc--ceeeeeecccccCeEEEE
Q 001258 833 VMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLA 909 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~ 909 (1113)
+.+++|.+++||... ....+..+..+...+++++|||....+++++..||.+.|||+.. ...+.+..-+....+.+.
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~ 493 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVR 493 (555)
T ss_pred eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceee
Confidence 444458999999987 66666677777778999999997778999999999999999975 344455555567778889
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 910 FSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 910 ~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
|+++|+.|+.|+..|++.+|++..
T Consensus 494 ~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 494 WSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999999965
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.9e-15 Score=152.45 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=153.8
Q ss_pred eEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 001258 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 942 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~ 942 (1113)
.+++|+. +|..|++|+.||.+|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+++++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t- 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT- 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-
Confidence 7899999 89999999999999999998888888888899999999999999999999999 79999999974322111
Q ss_pred ccCCCCCCCCCCCceEEEccCC---c-EEEEE--cCCeEEEEeCCccce---eeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258 943 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLVV--HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus 943 ~~~~~~~~~~~~i~~~~~spdg---~-~l~~~--~d~~v~v~d~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
+.+. .-....+.|+.|+ . ++++. .-+.|+.|++..... .+....-.-...|++++.|+||++++.|
T Consensus 225 --~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 225 --PFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --Cccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 1245678888877 3 33332 345666666543222 1111100114579999999999999999
Q ss_pred eCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1014 ~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
+.||.|.|++..+.+.+.- .+..|..-|+. +.|+| |.+++++.+.|.+..|..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~------vk~aH~~~VT~--ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQY------VKEAHLGFVTG--LTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEe------ehhhheeeeee--EEEcC-CcCcccccccCCceeEEEEeec
Confidence 9999999999988777643 55688888886 89999 7889999999999999988763
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.2e-14 Score=141.01 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=177.4
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
-..+|+|.+|++|+.. +|++.....|.||.......-. ...++..|...|++++|+|....|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 3578999999999995 8999999999999987654211 2236889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee----eEeeccCcCE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPV 512 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v 512 (1113)
+|+.|..-+||....+...++...+..|...+++|.|+|.+. .|++||.-+.|.||-.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999965555667778888999999999999999 7999999999999987754321 1223467889
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec-cccCceeEEEecCCCCEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~ 591 (1113)
.++.|++++ -+++.|+.|+..+++..--.. +-+-+.....-..+ |-|..+... ...+-+..+.|+|+|+.|+-
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~-Vdekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~law 223 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAW 223 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeec-cccCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence 999999765 689999999999999542100 00000000000000 011111111 23445667888888889999
Q ss_pred EecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEE
Q 001258 592 AGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLA 634 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 634 (1113)
.+.|..+.+-|..... .+..+.... -+..++.|-.+...++
T Consensus 224 v~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVA 265 (361)
T ss_pred ecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceee
Confidence 9999999999987654 233332221 2455666665544333
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=151.37 Aligned_cols=208 Identities=17% Similarity=0.222 Sum_probs=161.1
Q ss_pred CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee
Q 001258 713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 792 (1113)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 792 (1113)
..+.++.++.||.+.+.+-.... .+. -..|.+.+.+-.|+|||.-|++++.||.|++|.-.
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~rV----E~s----v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------- 134 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSARV----ERS----ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------- 134 (737)
T ss_pred CcceEEEEcCCceEEEecccchh----hhh----hhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-----------
Confidence 34678888999988877643211 111 13488999999999999999999999999999743
Q ss_pred eeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCC
Q 001258 793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872 (1113)
Q Consensus 793 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 872 (1113)
|-+... +.. ....|+|++|.|+...++.+..+.+.+=.+.....+...+.|++-|.++.|++ -+
T Consensus 135 ------------GMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s 198 (737)
T KOG1524|consen 135 ------------GMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QS 198 (737)
T ss_pred ------------chHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cc
Confidence 222211 111 57789999999999999999889999988887778888899999999999999 78
Q ss_pred cEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1113)
.++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.+|. .++++=.. ..
T Consensus 199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~ 256 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RV 256 (737)
T ss_pred cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Cc
Confidence 999999999999999965 6667777789999999999999 55554443 23441111 12
Q ss_pred CCCceEEEccCCcEEEEE-cCCeEEE
Q 001258 953 QSDTRVQFHQDQIHFLVV-HETQLAI 977 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~~-~d~~v~v 977 (1113)
+.|..++||+||..++++ ..|.+.+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 588999999999999984 6665543
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.9e-15 Score=151.70 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=159.5
Q ss_pred cEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258 822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1113)
Q Consensus 822 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1113)
.+++|+.+|..|++++ ||++|||+..+...+.....|...|.++.||| ||++|++-+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999977766653
Q ss_pred c--ccCeEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCccccc-cccccCCCCCCCCCCCceEEEccCCcEEEEE-c
Q 001258 901 H--SKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 971 (1113)
Q Consensus 901 h--~~~V~~l~~s~d~-----~~L~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~ 971 (1113)
. ......+.|+.|+ ...++...-+.|+.|++........ ...+....+ ..|.+++.|+||++++.+ .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2345667888777 3344445566788888766443110 011111111 368999999999999995 8
Q ss_pred CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999887655 58999999999999999999999999999988754
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=155.53 Aligned_cols=238 Identities=11% Similarity=0.159 Sum_probs=173.0
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--C
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1113)
+-+|.+-|+|++|+.||. +|++||.|-.+.|||+...+.++. +-.||.+.|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 346999999999999999 699999999999999998777764 5789999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCc-------eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-ee
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY 503 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~ 503 (1113)
.+.+++|..|..|+++|+...+ ...+...+..|...|.-|+-.|++.. .+.+++.||+|+-+|++.... -.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998521 12233356789999999999999966 799999999999999986321 11
Q ss_pred ---------EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee-----eeCCCCceEEEE-EccCCCeE
Q 001258 504 ---------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMA-YSADGTRT 568 (1113)
Q Consensus 504 ---------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~~ 568 (1113)
.+....-...++.++|... .+|+.|+.|-..++||.+...+... ...+.....++. |+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1112223456777777655 6999999999999999643222110 011111222232 34443322
Q ss_pred EeccccC---ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258 569 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1113)
Q Consensus 569 ~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1113)
..+.... ....+.|+|+|..|++.-....|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2332222 2456889999988888777789999999988765554
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-13 Score=156.87 Aligned_cols=269 Identities=14% Similarity=0.149 Sum_probs=178.3
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+.++..|...|..++.++...-++++||.||+|++||...-+.-. ..++ ...++.-....+.++.+.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEecc
Confidence 344455999999999987763379999999999999986422210 0000 0012333467899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--ceee--eeeeeecc--cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~--~~~~--~~~~l~~h--~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 504 (1113)
.|..+|+++.||.|++.++.-. .... +....+.+ ...|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 11111222 2234444565544433677888889999999988776655
Q ss_pred ee--ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEE
Q 001258 505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
++ -..+.|++++.++. +.++++|+..|.+.+||++-...+..+..+. .++..+...|-..
T Consensus 1189 lk~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~--------------- 1251 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP--------------- 1251 (1431)
T ss_pred hhcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC---------------
Confidence 54 24578999997654 4799999999999999999776666544332 3455554443221
Q ss_pred ecCCCCEEEEE-e-cCCcEEEEECCCCceEEEEccCCC-----------------CCCcCeEEECCCCCEEEEEECCCcE
Q 001258 582 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 642 (1113)
Q Consensus 582 ~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i 642 (1113)
.....+++ + ..+.|.+|++.+|.+...+..... .-....+.+...+.++.+|+.|..|
T Consensus 1252 ---~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1252 ---QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred ---CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 22234443 3 578899999999877666643210 0111233344456789999999999
Q ss_pred EEEEcCCCc
Q 001258 643 KILATSDGI 651 (1113)
Q Consensus 643 ~iwd~~~~~ 651 (1113)
+.||.....
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999988763
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=3.7e-14 Score=139.46 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=160.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001258 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG- 499 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~- 499 (1113)
.+|+|.+|++|+..+|.+-....|.||.....+......++..|...|+.|+|+|... .|++|+.|..-+||....+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCCC
Confidence 4899999999999999999999999999998887777789999999999999999998 5999999999999998433
Q ss_pred --ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 500 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 500 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
++...+..+....+++.|+|.. +.+++|+.-..|.+|-++..+.=..-.....+ ....+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkP-----------------irStv 149 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKP-----------------IRSTV 149 (361)
T ss_pred eeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCc-----------------cccce
Confidence 3445666788999999998776 58999999999999977643221110000011 11234
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECC-----C-------------CceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 639 (1113)
.+++|+|++-.|++|+.|+..+++..- + |+++..+. ...+.+..+.|+|+|..|+-.+.|
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCC
Confidence 556666666689999999999998641 1 11222222 223578999999999999999999
Q ss_pred CcEEEEEcCCCc
Q 001258 640 NGIKILATSDGI 651 (1113)
Q Consensus 640 g~i~iwd~~~~~ 651 (1113)
..+.+-|.....
T Consensus 228 s~v~~~da~~p~ 239 (361)
T KOG1523|consen 228 STVSFVDAAGPS 239 (361)
T ss_pred CceEEeecCCCc
Confidence 999999877664
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=7.6e-14 Score=146.37 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=171.5
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCceee------eecCCCCCeeEEEE-----ecCCCcEEEEEecCCcEEEEE
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA------TFMPPPPAATFLAF-----HPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~------~~~~~~~~i~~l~~-----s~~d~~~la~g~~dg~v~iwd 888 (1113)
.+.....+-.|++|+..-...+.+|+...+..+. .+.+ ...+|=+| .+ ++--|.+|-..|.|++.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCC-CCcceEEeeccCceEEec
Confidence 3445556667888888777889999987533221 1222 22333333 24 556677899999999998
Q ss_pred cccceeeeeec----ccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccc---------cccccCCCC------
Q 001258 889 VRVDEVKSKLK----GHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKN---------RFLQIPTGR------ 948 (1113)
Q Consensus 889 ~~~~~~~~~l~----~h~~~V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~---------~~~~~~~~~------ 948 (1113)
....+..+.+. -....|+++.|-|.+.. ++.+-.+|.++++|..-...... ....+....
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 76532222111 13478999999986544 44455789999997532110000 000000000
Q ss_pred -----CCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 001258 949 -----TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1113)
Q Consensus 949 -----~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vw 1022 (1113)
....+.|...+|+|||++||+ +.||.++|||..+.+++..+. ..-+...|++|||||+||++|+.|-.|.||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 001246789999999999999 799999999999988876654 335689999999999999999999999999
Q ss_pred ecCCCceeeecCCCcccCCCcccCccceEEEEeC----------------------------------C-----------
Q 001258 1023 SAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHP----------------------------------Q----------- 1057 (1113)
Q Consensus 1023 d~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p----------------------------------~----------- 1057 (1113)
.+...+.+++-+ ||.+.|.. ++|.| .
T Consensus 360 Sf~erRVVARGq-------GHkSWVs~--VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~ 430 (636)
T KOG2394|consen 360 SFEERRVVARGQ-------GHKSWVSV--VAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRI 430 (636)
T ss_pred EeccceEEEecc-------ccccceee--EeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccc
Confidence 999999998876 89998886 55541 0
Q ss_pred --CCCEEEEEeCCCcEEEEeccCCC
Q 001258 1058 --EPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1058 --d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
...++.+.+.|-.+.+||+....
T Consensus 431 ~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 431 NSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cceEEEeecccccceEEEEecchhh
Confidence 12357889999999999999877
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=2.7e-12 Score=141.01 Aligned_cols=327 Identities=13% Similarity=0.153 Sum_probs=193.4
Q ss_pred EEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC
Q 001258 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1113)
Q Consensus 525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1113)
++++-..+|.|.+.|..+.+....+.........+.+++||+ ++++.+.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence 345666789999999998777777765544434455666665 68888899999999999
Q ss_pred CCceEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhh
Q 001258 605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683 (1113)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1113)
+++.+..+.... ...++++++||++++++. .++.+.++|..+. +.++.+.......
T Consensus 67 ~~~~v~~i~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~------------------- 123 (369)
T PF02239_consen 67 TGKVVATIKVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV------------------- 123 (369)
T ss_dssp SSSEEEEEE-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred cccEEEEEecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence 999999987543 357899999999998775 5889999999887 4554442211100
Q ss_pred hhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCC
Q 001258 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 763 (1113)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 763 (1113)
.....++.++..+|..
T Consensus 124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 124 ----------------------------------------------------------------DGPESRVAAIVASPGR 139 (369)
T ss_dssp ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence 0023456777778888
Q ss_pred ceEEEeecC-CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCe
Q 001258 764 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 840 (1113)
Q Consensus 764 ~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~ 840 (1113)
..++..-.+ +.|.+-|...... +....+. .........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~---------------------~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKN---------------------LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSC---------------------EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEeccccc---------------------cceeeec---ccccccccccCcccceeeecccccce
Confidence 756555554 7776655442100 0000010 234456789999999988876 689
Q ss_pred EEEEECCCCceeeeecC----CCCCeeEE-------EEec-CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258 841 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHP-QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1113)
Q Consensus 841 i~vwd~~~~~~~~~~~~----~~~~i~~l-------~~s~-~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1113)
|.++|..+++.+..+.. |..+...+ .|.- ..+...++.-....+.+||..+++.++++....+. ..+
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 99999998877765432 22222222 1211 02222222223345667888888888888776555 677
Q ss_pred EEcCCCCEEEEE----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc
Q 001258 909 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1113)
Q Consensus 909 ~~s~d~~~L~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~ 984 (1113)
..+|++++|... ...++|.++|. ++.+
T Consensus 275 ~thP~s~~vwvd~~~~~~~~~v~viD~-------------------------------------------------~tl~ 305 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDADTVQVIDK-------------------------------------------------KTLK 305 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT-EEEEEC-------------------------------------------------CGTE
T ss_pred ecCCCCccEEeeccCCCCCceEEEEEC-------------------------------------------------cCcc
Confidence 778888887765 22244555554 4444
Q ss_pred eeeccccCCCCCCeeEEEECCCCCEEEEEeCC--CcEEEEecCCCceeeecC
Q 001258 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~vwd~~~~~~~~~~~ 1034 (1113)
.+..+.... ...+..+.|++||+++.....+ +.|.|||..+.+++.++.
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 444433211 2348899999999986654443 369999999999998876
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-13 Score=156.82 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=151.1
Q ss_pred CCCCccEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE--Ec
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY--NV 889 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw--d~ 889 (1113)
+...+.+.+|+|||+.|+..+ + ..|++||+.+++.... .........++|+| ||+.|+.+. .+|.+.|| |+
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEEC
Confidence 567789999999999999876 2 3699999988754222 21223345789999 888777664 67866555 66
Q ss_pred ccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
.+++ ...+..|...+.+.+|+|||+.|+.++ .++...||+++....... .+ .+. . ....|+|||++++
T Consensus 280 ~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l----~~~----~-~~~~~SpDG~~ia 348 (429)
T PRK01742 280 NGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV----GGR----G-YSAQISADGKTLV 348 (429)
T ss_pred CCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee----cCC----C-CCccCCCCCCEEE
Confidence 5554 456667777889999999999877655 578888888764322111 11 111 1 3568999999998
Q ss_pred EEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec--CCCceeeecCCCcccCCCcccC
Q 001258 969 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus 969 ~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~--~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
+.....+.+||+.+++...... . ....++.|+|||++|+.++.++.+.+|.+ .+|+...++. +|.+.
T Consensus 349 ~~~~~~i~~~Dl~~g~~~~lt~--~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------~~~g~ 417 (429)
T PRK01742 349 MINGDNVVKQDLTSGSTEVLSS--T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------GSDGQ 417 (429)
T ss_pred EEcCCCEEEEECCCCCeEEecC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-------CCCCC
Confidence 8655667779999887643322 1 13356889999999999999999888876 3577777765 66666
Q ss_pred ccceEEEEeC
Q 001258 1047 VHPLVIAAHP 1056 (1113)
Q Consensus 1047 v~~i~~~~~p 1056 (1113)
+.. .+|+|
T Consensus 418 ~~~--p~wsp 425 (429)
T PRK01742 418 VKF--PAWSP 425 (429)
T ss_pred CCC--cccCC
Confidence 553 67777
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.7e-13 Score=152.19 Aligned_cols=224 Identities=13% Similarity=0.139 Sum_probs=148.0
Q ss_pred CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceee
Q 001258 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 456 (1113)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 456 (1113)
+..|.|||....... .+..|...|.+.+|||||++|+.++.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998754422 256678889999999999999987654 469999999876432
Q ss_pred eeeeeecccCCeeEEEEcCCCCeeEEEE-ecCCCcEEEE--eCCCCceeeEeeccCcCEEEEeeeecCCceEEEE-EecC
Q 001258 457 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS-TALD 532 (1113)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s-~s~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d 532 (1113)
+..+.+| ..+++|+|||+. |+. .+.++.+.|| |+.++. +..+..+...+...+|++ ||..|+. ...+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2233344 447899999994 544 4567776555 655554 455666777777788765 4565554 4467
Q ss_pred CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1113)
Q Consensus 533 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1113)
|...+|++...........+.. . ...|+|++++++..+.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~---------------------~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--Y---------------------SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--C---------------------CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8889998764332211111111 1 234566666777776654 666999888765332
Q ss_pred ccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC--CCccceecccccc
Q 001258 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA 661 (1113)
Q Consensus 613 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 661 (1113)
... ...++.|+|||++|+.++.++...+|.+. ++ ...+.+..+.
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~ 415 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD 415 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence 221 23578899999999999999998888763 34 4555555444
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.1e-11 Score=139.02 Aligned_cols=200 Identities=14% Similarity=0.193 Sum_probs=150.4
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1113)
|....+.-+.+ .++.++.+..+.|||...+..+.. +..+.. .+ -....-+-++++.-++++|+.
T Consensus 90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~-------i~~~er----~~----l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK-------IQSDER----CT----LYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred ccccchhhhcc-eEEEEEcCceEEEEecccCceehh-------cCCCce----EE----EEeEEEEeccCcEEEEEeccc
Confidence 33355555666 488888999999999987655431 000000 00 012233456778889999999
Q ss_pred CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-EeeccCcCEEEEeeee
Q 001258 441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHH 519 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~ 519 (1113)
-+.|.+|+..... . + ..+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++... +.-+|...|+.++|.+
T Consensus 154 ~~~iivW~~~~dn-~-p-~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 154 FGEIIVWKPHEDN-K-P-IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred cccEEEEeccccC-C-c-ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence 9999999998322 1 1 14789999999999999999 89999999999999999988876 7788999999999875
Q ss_pred cCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEE
Q 001258 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599 (1113)
Q Consensus 520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 599 (1113)
. .+++++.|.+.++|+..-.. . ..+.+|..+.++.++.++....+++++.|+.++
T Consensus 229 n----~i~t~gedctcrvW~~~~~~-l--------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 229 N----RIITVGEDCTCRVWGVNGTQ-L--------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred c----eeEEeccceEEEEEecccce-e--------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 4 79999999999999654211 1 134555566677777777777899999999999
Q ss_pred EEECCCC
Q 001258 600 FWDMDSV 606 (1113)
Q Consensus 600 iwd~~~~ 606 (1113)
+|++...
T Consensus 284 ~~~l~~r 290 (967)
T KOG0974|consen 284 LWDLNGR 290 (967)
T ss_pred hhhhhcc
Confidence 9998653
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2.4e-12 Score=141.43 Aligned_cols=329 Identities=15% Similarity=0.130 Sum_probs=193.9
Q ss_pred eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
+++++-..++.|.|.|..+.+.+.++......-..+. .++||+++++.+.||.|.++|+.+.+...++.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~--~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK--FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE--ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 4567777899999999999999999986544333344 456778999999999999999999886666654 3345667
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCC-----CCCcCeEEECCCCCEE
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL 633 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l 633 (1113)
++++||+ +++++ ...+.+.++|..+.+.+..+...+. ...+..+..+|....+
T Consensus 84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 7777666 56554 4799999999999999988764321 2345677778887766
Q ss_pred EEEECC-CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccC
Q 001258 634 AVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 712 (1113)
Q Consensus 634 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1113)
+..-.| +.|.+.|..+........
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------- 167 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------- 167 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence 655554 677766755441111000
Q ss_pred CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCce
Q 001258 713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKA 791 (1113)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~ 791 (1113)
.+ .........|+|++++++++.. +..+-++|......
T Consensus 168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------ 206 (369)
T PF02239_consen 168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------ 206 (369)
T ss_dssp ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence 00 1223456789999998766543 57888887654322
Q ss_pred eeeecCeecCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEE-eCCeEEEEECCCCceeeeecCCCCCeeEEEEec
Q 001258 792 TASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869 (1113)
Q Consensus 792 ~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 869 (1113)
+.....|..... ......|...-.--+....+...++. +.+.+.+||..+++.++++...... ..+..+|
T Consensus 207 -------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 207 -------VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp -------EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred -------EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence 011111110000 00000011110111222333343222 3456778999999999999876666 8888899
Q ss_pred CCCcEEEEE----ecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccc
Q 001258 870 QDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQ 937 (1113)
Q Consensus 870 ~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~~~~~~ 937 (1113)
+++++.+. ...+.|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+ +.|.+||..+.+..
T Consensus 279 -~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 279 -DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred -CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 88888887 455899999999988877775333 358999999999977655543 36999999996543
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.6e-12 Score=128.53 Aligned_cols=262 Identities=12% Similarity=0.133 Sum_probs=164.5
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....|++++|-|.+...++.+.-+.|.+|..+......- .++......+++ +.+.+| ..|+++.|.+|
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~~qv----l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHHLQV----LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccchhh----eeCCCC-ceeeEEEEcCC
Confidence 345789999999877666666667789998764321000 000000001111 222234 78999999999
Q ss_pred CCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 830 DSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
|..+++++ |..|.|||.+++.++.......+.++-+.||| |+.+|+.++-|+..++|............--++.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 68899999999887766555567799999999 8999999999999999955432222333334569999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--c--------------cccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQK--N--------------RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~--~--------------~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~ 971 (1113)
.+|+|+|++|..++.. .=++|.+....... . ....+..+...-.+.+.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 9999999887655432 23444433211110 0 00111122222235789999999999999953
Q ss_pred CC---------eEEEEeCCccceeeccccC-CCCCCeeEEEECC---CCCEEEEEeCCCcEEEEecC
Q 001258 972 ET---------QLAIFETTKLECVKQWVPR-ESSAPITHATFSC---DSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 972 d~---------~v~v~d~~~~~~~~~~~~~-~h~~~v~~l~~s~---dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
.+ .|.+||....-.+.....+ .......-++|.| ++.+|..+-..|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 22 3556766544433322111 0122355667765 56677777777777777664
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.1e-12 Score=127.45 Aligned_cols=242 Identities=14% Similarity=0.178 Sum_probs=166.8
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEE-EEecC------CcEEEEEc
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNV 889 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-~g~~d------g~v~iwd~ 889 (1113)
....+++|+.|...+++|.|...+||+.+-.+.....+.+.. .+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999986444322222222 23333332 23444 34333 37999996
Q ss_pred ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
...+++.++. ...+|.++.+++| .||..- .+.|+||.....-+. +...+....+ ....+++-+.+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~----l~~~et~~NP-kGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL----LHVIETRSNP-KGLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh----eeeeecccCC-CceEeecCCCCceEEEc
Confidence 6677777776 6678999999866 455443 567999998753221 1111111111 12223333334445555
Q ss_pred -E-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccC
Q 001258 970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus 970 -~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
| .-|+|+|-|+...+.-......+|.+.|.|++++-+|.+|||++..|+ |||||..+|+.+..++- . .-...
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR----G-~d~A~ 228 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR----G-VDRAD 228 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec----C-Cchhe
Confidence 5 568999999986665323334589999999999999999999999998 99999999999988761 1 11234
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1047 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1047 v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|. +++|+| |+.+|++.|+.|||+|+.+...+
T Consensus 229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 55 589999 78999999999999999998755
No 222
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.53 E-value=6.6e-14 Score=134.05 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhh
Q 001258 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 72 (1113)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~ 72 (1113)
-++|+.|||++||...||.++|+.+.+|+|+..+ ...+|.+|..|+-++|++.+.++. .++.+. .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence 4689999999999999999999999999999772 678999999999999999999983 333332 48
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccCCC--ChhHHHHHHHHHHhh
Q 001258 73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL 150 (1113)
Q Consensus 73 ~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~ 150 (1113)
.|.+++|+++||+..+...+|+.|++.++.|+...+++.++.|...+....++.....+ ... ....|+++++.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888877665555322221 111 346799999999887
Q ss_pred ccCCCCcccccCCCCCc-hhHHHHHHHHHHHHHH
Q 001258 151 IEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQH 183 (1113)
Q Consensus 151 ~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~ 183 (1113)
|-...- .+ ..+|..||+...+.|.
T Consensus 181 iL~~~~---------~~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 181 ILASQE---------HESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHhc---------ccccchHHHHHHHHHHHHH
Confidence 754321 11 4488888877666663
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.5e-12 Score=127.59 Aligned_cols=255 Identities=16% Similarity=0.176 Sum_probs=163.4
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CCeEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFG 436 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~la 436 (1113)
...+..++|++.--. +|++..|-.|+|||-.....-. +-..-...|+|++|-|. ++-|+
T Consensus 98 ~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 456688999996653 7888999999999976522111 11223457999999994 55677
Q ss_pred EEeCCCeEEEEEccCCceee-----------eeeeeecccCCeeEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCceeeE
Q 001258 437 VAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~ 504 (1113)
+|+..| |.||.....-... ++..-.+| .+|+++.|.+||. .+++++ .|..|.|||..+|.++..
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777666 9999875321110 11123355 5899999999999 677777 467899999999988766
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc-CceeEEEec
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK-RSLGVVQFD 583 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~-~~i~~~~~~ 583 (1113)
.....+.+.-+.|+|+ +.+|+.++-|+..++|+....-.........+.|...+|+|+|+.++..... ..+..+.|+
T Consensus 234 ~~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred cccCCCceeeEEEcCC--CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 5445677888898765 4799999999999999655433333334444589999999999865443332 233334443
Q ss_pred CCCCEEE-EEecCCcEEEEECCCCceEEEEccC-CCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 584 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 584 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
.....+. .++.....-+-|+..-. ..... --.+++.+++|.|.|.+|++....+.
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 3322221 22222222233332111 00000 01235789999999999999866543
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2e-11 Score=132.16 Aligned_cols=547 Identities=11% Similarity=0.108 Sum_probs=308.1
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
.+....|++|+....| +|+|+.||.++|-.+.+...-.. .-.+++.+.-.....+.||.+.|..+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4556789999999986 99999999999999876432211 001112222223346899999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee--EeeccCcCEEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS 514 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~ 514 (1113)
+...+|.|.||-+-.|...... .-...++.|.+++|..||. .+.....||.|.|=.++. ..+. .+++. ....
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdG-NRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDG-NRIWGKELKGQ--LLAH 161 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeecc-ceecchhcchh--eccc
Confidence 9999999999999887654321 1223566799999999999 577778888887766543 2221 23321 1223
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-eEE-EEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
+.|++ |...++.+-..|.+.++|....-.. .+ +... |+. -.++.-+.+ +.++....-...-..|+...|+++
T Consensus 162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~-Kl--~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 162 VLWSE--DLEQALFKKANGETHLYDNQGNFER-KL--EKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred eeecc--cHHHHHhhhcCCcEEEecccccHHH-hh--hhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEE
Confidence 45554 3356777777899999987532111 11 1111 111 112222221 111111111122334677889999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
...|.+.+-.-.+...-..+... -.+....|+++|..|++++.+..--- +..+ ..+..
T Consensus 236 y~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~--n~v~F---------------- 293 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDS--NKVHF---------------- 293 (1189)
T ss_pred EcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-cccc--ceEEE----------------
Confidence 99999988765443332233221 25778999999999999987632100 0000 00000
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
+++.+ .....+.. ...
T Consensus 294 --ysp~G----------------------------------------------------------~i~gtlkv----pg~ 309 (1189)
T KOG2041|consen 294 --YSPYG----------------------------------------------------------HIVGTLKV----PGS 309 (1189)
T ss_pred --eccch----------------------------------------------------------hheEEEec----CCc
Confidence 01111 00011111 224
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEcccc----------ccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~ 822 (1113)
.|++++|-..|-.++.+ -|+.|++=++... .+--.+.......+.+||..+.+..-.. -....
T Consensus 310 ~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~ 382 (1189)
T KOG2041|consen 310 CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFE 382 (1189)
T ss_pred eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hccee
Confidence 55666665555443332 2334444332211 0000111222234567887766533322 22345
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEC-CCCceeeeecC-------CCCCeeEE--EEecCCCcEEEEEecCCcEEEEEccc
Q 001258 823 CFALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFMP-------PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~-------~~~~i~~l--~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
++++..+--.|+.-. +|.|.-++. ++...+..+.- -....+.+ .|-.-++..++.++.+ .+.+|....
T Consensus 383 ~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~ 461 (1189)
T KOG2041|consen 383 NMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVL 461 (1189)
T ss_pred ehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEec
Confidence 566665544444444 455554421 22211111100 01111111 1222256677777766 678887532
Q ss_pred ce--------------------------------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258 892 DE--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1113)
Q Consensus 892 ~~--------------------------------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~ 939 (1113)
.+ -..++.|..++|.+++.+ .++|..+-..|.|.-+.+........
T Consensus 462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 11 013455677889888886 57888899999999999987432211
Q ss_pred cccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC---ccceeeccccCCCCCCeeEEEECCCCCEEEEEeC
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
.+....+..++++-+...+++ -.-|.+.+.|+. +|+.+..+.. .....|..+.|..|+..|++-..
T Consensus 540 ---------y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlme 609 (1189)
T KOG2041|consen 540 ---------YPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALME 609 (1189)
T ss_pred ---------cccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhh
Confidence 111236788998888888887 466777777775 3444443321 22567899999998887777666
Q ss_pred CCcEEEEecCC
Q 001258 1016 DATVCVFSAAN 1026 (1113)
Q Consensus 1016 Dg~v~vwd~~~ 1026 (1113)
...++|++-..
T Consensus 610 Ktrmyifrgnd 620 (1189)
T KOG2041|consen 610 KTRMYIFRGND 620 (1189)
T ss_pred hceEEEecCcC
Confidence 66677776543
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.9e-12 Score=135.70 Aligned_cols=195 Identities=11% Similarity=0.196 Sum_probs=155.5
Q ss_pred cEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258 822 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1113)
Q Consensus 822 ~~l~~s-~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1113)
..++++ |+..++++|+...|+-++++.|..+..+....+.++++..++ -..+|++|+.+|.|..||..+...+..+..
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 344554 455677777788899999999999999988888999999999 788999999999999999988766655532
Q ss_pred ------ccc-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEE
Q 001258 901 ------HSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHF 967 (1113)
Q Consensus 901 ------h~~-----~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l 967 (1113)
|.+ .|+++.|+.||-.+++|..+|.|.|||+.+.+... .... +. ..+|..+.|.+. +..+
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh-~~---e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDH-GY---ELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---eccc-CC---ccceeeecccccCCCceE
Confidence 333 49999999999999999999999999999854321 1111 11 146888888765 4556
Q ss_pred EEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 968 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 968 ~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
++.....++|||-.+|+......+ ...+..+|+-|++.+++++..++.+..|=++..
T Consensus 289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 667778899999999999887764 567999999999999999999988887776654
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=3.3e-13 Score=141.63 Aligned_cols=157 Identities=19% Similarity=0.273 Sum_probs=117.8
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe---------eeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
.+..|+|+.|-|-++.+++.+-.+|.+++||.+....... ..|.+-.........+.....--.+.|...+
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 3489999999998887777788899999998632111100 0011100000000011111222345899999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 507 (1113)
|||||++||+.+.||.++|+|..+.+.+. .++.--+...||+|||||+ +|++|++|--|.||.+..++.+..-++
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999977655 4455667899999999999 899999999999999999999999999
Q ss_pred cCcCEEEEeee
Q 001258 508 HEAPVYSVCPH 518 (1113)
Q Consensus 508 h~~~v~~~~~~ 518 (1113)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999987
No 227
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.49 E-value=2.1e-09 Score=111.66 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=105.9
Q ss_pred ccCceEEEEEeCCCceEEEeecCC-eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 750 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
+...|.-..+..+++.++.+..|| .+-|++.. ++.+.... +.-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence 344455556666666778888887 77777654 33322211 1456789999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----cEEEEEcccceeeeeeccccc
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
+|++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|++||+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999987666666677899999999 999999988776 68999999887654332 222
Q ss_pred CeEEEEEcCCCCEEEEEeC
Q 001258 904 RITGLAFSHALNVLVSSGA 922 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~ 922 (1113)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 2345688899998876543
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=8e-11 Score=125.34 Aligned_cols=254 Identities=15% Similarity=0.228 Sum_probs=166.4
Q ss_pred cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCC--c
Q 001258 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN--N 873 (1113)
Q Consensus 796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~--~ 873 (1113)
.+++|+.+++......... .... ++..|+.|..+.+--..+.+.+|++.+.+.+.. .-|...|+.+.+|| ++ .
T Consensus 106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~ 180 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP 180 (566)
T ss_pred ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence 3456666664432221111 2222 588899998877666688999999987443322 23577899999999 53 3
Q ss_pred EEEE-----EecCCcEEEEEcccceeeeeec---ccccCeEEEEEcCCCCE-EE--EEeCCC---------cEEEEeCCC
Q 001258 874 IIAI-----GMDDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNV-LV--SSGADS---------QLCVWSSDG 933 (1113)
Q Consensus 874 ~la~-----g~~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~-L~--s~s~D~---------~v~iwd~~~ 933 (1113)
.+|+ ++.-+.|+||.+........+. -....=..+.|.+-|.- |+ +..-|. ++++.++++
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 4444 3455689999887322211111 01122234677766643 33 333343 678888773
Q ss_pred CccccccccccCCCCCCCCCCCceEEEccCCcEEEEE---cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEE
Q 001258 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~---~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1113)
..+ ...... .++|.++.|+|+|+.++++ .-..+.|||++ +..+..+. .++=.++-|+|.|++|
T Consensus 261 ~s~----~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 261 ESV----SVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII 326 (566)
T ss_pred ceE----EEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence 221 122221 1589999999999988874 45689999987 55555554 6778899999999998
Q ss_pred EEEeCC---CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC------CCcEEEEeccCCC
Q 001258 1011 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1080 (1113)
Q Consensus 1011 ~s~~~D---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1080 (1113)
+.+|-+ |.|-|||+.+.+++..+.. -....+.|+| ||.+++|+.. |+.++||++....
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEeecCCCCCceEEEeccchhhcccccc-----------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 887754 8899999999999877651 1223589999 7899887766 7899999976443
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.8e-12 Score=133.42 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=175.6
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+++-+.+...-+.+..||||+|++|+|..--.|++||+..-.....+- -....|.-.-+|-
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLsD 104 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILSD 104 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEecc
Confidence 345566888889999999999999999999999999997644322110 1123455556666
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
|-..++.-..|.+|.+..--. ... .++ -...-.+++++.-.-. |..++....|+-.+++.|+.+..|....+
T Consensus 105 D~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred chhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence 666667667788776544322 111 111 0112244555544443 44444456788899999999999988889
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.++++.+++.. .+|++|+.+|.|-+||.+.......+..... |.+.... .....++.+.|+.+|-.++
T Consensus 177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg~---------~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPGG---------DAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCccc---------cccCcceEEEecCCceeEE
Confidence 99999876544 5889999999999999998766655543322 1111110 1112456667777777899
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC--CCEEEEEECCCcEEEEEcCCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+|..+|.|.|||+++.+++..-. |....+|..+.|.+. +..+++. +...++|||-.+|
T Consensus 245 VGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred eeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 99999999999999988876544 444567889999875 3445544 4478999998887
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=4.5e-13 Score=138.22 Aligned_cols=280 Identities=11% Similarity=0.163 Sum_probs=207.3
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
.-..+.++.+|+.++.++.-|.+..+|+.+. .+... + .-...|..+.|-.+.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~----------------------~L~~E-i---~v~Etv~Dv~~LHneq~ 184 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK----------------------KLHFE-I---NVMETVRDVTFLHNEQF 184 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc----------------------eeeee-e---ehhhhhhhhhhhcchHH
Confidence 4467889999999999999999998887632 22211 1 13567889999999999
Q ss_pred EEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcC
Q 001258 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 912 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 912 (1113)
+|++...-+.|||-. |..++.+..+ ..+..+.|-| ---+|++++..|.++--|+.+|+.+..+..-.+.+..++-.|
T Consensus 185 ~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCC-CcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 999999999999964 5666777644 4589999999 788999999999999999999999999998899999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecccc
Q 001258 913 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP 991 (1113)
Q Consensus 913 d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~ 991 (1113)
-+-.+-+|...|+|.+|.....+. +.....|. ++|.++++.++|.|+++ |.|..++|||+++...+.++..
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 999999999999999999887443 22222333 48999999999999999 7999999999999887766653
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec-CCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCc
Q 001258 992 RESSAPITHATFSCDSQLVYACFLDATVCVFSA-ANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGG 1070 (1113)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~-~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~ 1070 (1113)
..+...++||..| +++.+....|.||.- -.+...... .|+...-.+.|.. +.|.|- .+.|-.|..-|-
T Consensus 334 ---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~--l~FcP~-EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 334 ---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET---PYMNHRCGGPVED--LRFCPY-EDVLGIGHAGGI 402 (545)
T ss_pred ---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc---chhhhccCccccc--ceeccH-HHeeeccccCCc
Confidence 3567778888665 444455667999943 222111111 1221122345554 777773 456666666664
Q ss_pred EEEEeccCCC
Q 001258 1071 VHVFEPLESE 1080 (1113)
Q Consensus 1071 v~vW~~~~~~ 1080 (1113)
-.+-=.-.||
T Consensus 403 tsilVPGsGe 412 (545)
T KOG1272|consen 403 TSILVPGSGE 412 (545)
T ss_pred eeEeccCCCC
Confidence 4444444444
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.4e-11 Score=140.29 Aligned_cols=214 Identities=11% Similarity=0.112 Sum_probs=143.9
Q ss_pred CCCCccEEEEecCCCEEEEEe----CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCC--cEEEEEc
Q 001258 817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS--SIQIYNV 889 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg--~v~iwd~ 889 (1113)
+...+.+.+|||||+.|+..+ +..|.+|++.+++... +.........++|+| ||+.|+.. +.+| .|++||+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEEC
Confidence 456788999999999998764 2469999998875432 222333455789999 78777654 4455 5899999
Q ss_pred ccceeeeeecccccCeEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
.+++... +..+...+....|+|||+.|+.++.+ +. |.++|+.+++... +. ..+ .......|+|||++
T Consensus 275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt-~~~-----~~~~~~~~SpDG~~ 344 (429)
T PRK03629 275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---IT-WEG-----SQNQDADVSSDGKF 344 (429)
T ss_pred CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---ee-cCC-----CCccCEEECCCCCE
Confidence 8876544 44445567899999999999877754 44 4444666543211 11 111 13467899999999
Q ss_pred EEEE-cC---CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc---EEEEecCCCceeeecCCCccc
Q 001258 967 FLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT---VCVFSAANLKLRCRINPSAYL 1039 (1113)
Q Consensus 967 l~~~-~d---~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~---v~vwd~~~~~~~~~~~~~~~~ 1039 (1113)
++.. .+ ..|.+||+.+++.... .. . .......|+|||++|+.++.++. +.+++++ |....++.
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~-~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~----- 414 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQVL-TD-T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP----- 414 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEe-CC-C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc-----
Confidence 9873 22 3588999988875432 21 1 23356889999999999888765 6777774 44445554
Q ss_pred CCCcccCccceEEEEeC
Q 001258 1040 PAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus 1040 ~~gh~~~v~~i~~~~~p 1056 (1113)
+|.+.+.. .+|+|
T Consensus 415 --~~~~~~~~--p~Wsp 427 (429)
T PRK03629 415 --ATDGQVKF--PAWSP 427 (429)
T ss_pred --cCCCCcCC--cccCC
Confidence 55555553 66665
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=1.3e-12 Score=134.80 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=195.7
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeee------------------------eeeccCCCCcccccc
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQAA 414 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 414 (1113)
.....+.|+.+|++ |+.|+.-|.|..+|+.+++......+ -+||-...+..+
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC--- 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC--- 205 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee---
Confidence 34578999999997 66778899999999999988765332 233322222211
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
+..| ..|..+.|-|.--+|++++..|.++.-|+.+|+.+. .+..-.+.+..++-+|-+. ++-+|...|+|.+|
T Consensus 206 -lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 206 -LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLW 278 (545)
T ss_pred -hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEec
Confidence 2333 478889999999999999999999999999999877 4556678899999999988 78899999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
.....+++..+..|.++|.++++. ++|.|++|.+.|..++|||++....+.++.. ......+++|..|
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~--~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--------- 346 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVD--RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--------- 346 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEEC--CCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---------
Confidence 999999998888999999999965 5668999999999999999998776666554 4455666666655
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECC-C--CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-S--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
+++.+....|.||.-. . +.....+-.|.....|..+.|.|-...|-+|...|.-.+.-...|.
T Consensus 347 --------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 347 --------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred --------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 5666777789999532 2 1222223333334578999999988888888887766666555553
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=2.7e-08 Score=121.61 Aligned_cols=532 Identities=12% Similarity=0.132 Sum_probs=284.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEE----ecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+.-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999985 7888899999999 555443322 22335589999999999
Q ss_pred CeEEEEeCCCeEEEEEcc----C---------Cc--ee--------eee----------------------eeeecccCC
Q 001258 433 SLFGVAYSRHIVQIYSYH----G---------GD--EV--------RQH----------------------LEIDAHVGG 467 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~----~---------~~--~~--------~~~----------------------~~l~~h~~~ 467 (1113)
..||....+++|.+.+-. . |+ .+ .++ ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999988875421 0 00 00 000 0111 3345
Q ss_pred eeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEE
Q 001258 468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1113)
Q Consensus 468 V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw 538 (1113)
-..|+|-.||. +||..+. -+.+|||+ +.|....+-..-.+--.+++|.|+ |++|++... ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPS--GNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCC--CCEEEEEEEcCCCcEEEEE
Confidence 67899999999 6666553 25799999 567755544433333445677654 468887764 3346666
Q ss_pred EcCCCCCeeeee----CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE--EEE
Q 001258 539 LYDNLGSRVDYE----APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSI 612 (1113)
Q Consensus 539 d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~ 612 (1113)
.-. +-....+. .....|..+.|++| +..|+....| .|.+|-..+.... +.+
T Consensus 287 ErN-GLrhgeF~l~~~~~~~~v~~l~Wn~d---------------------s~iLAv~~~~-~vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 287 ERN-GLRHGEFTLRFDPEEEKVIELAWNSD---------------------SEILAVWLED-RVQLWTRSNYHWYLKQEI 343 (928)
T ss_pred ecC-CcEeeeEecCCCCCCceeeEEEECCC---------------------CCEEEEEecC-CceEEEeeCCEEEEEEEE
Confidence 422 11111221 12334445555554 4456665544 4999998876533 233
Q ss_pred ccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258 613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1113)
Q Consensus 613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1113)
..... ..+..+.|+| +...|...+.+|.+..++..-. ...+...
T Consensus 344 ~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~----------------------------- 388 (928)
T PF04762_consen 344 RFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS----------------------------- 388 (928)
T ss_pred EccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC-----------------------------
Confidence 32222 2345699999 4556777777787766654211 0000000
Q ss_pred ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc--eecccCcccccCceEEEEEeCCCceEEEe
Q 001258 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPENLRATKISRLIFTNSGNAILAL 769 (1113)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 769 (1113)
.++....+..-....+.+-.+.....+... ..+. -...|.+++|++++..+++.
T Consensus 389 -------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 389 -------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred -------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEE
Confidence 000111111111134444444433332222 2222 34689999999999989999
Q ss_pred ecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-C---CeEEEEE
Q 001258 770 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFN 845 (1113)
Q Consensus 770 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd 845 (1113)
..||.+.+|.+.............. .......... .........+..++|..+...++... + ..+.+++
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEE
Confidence 9999999998764322110000000 0000000000 00001345677888888887777665 3 4688888
Q ss_pred CCCCc---eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee-eeeecccccCeEEEEEcCCCC---EEE
Q 001258 846 MMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLV 918 (1113)
Q Consensus 846 ~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~L~ 918 (1113)
+.... ...........+..+...+ +...++.-..+|.+..++...... +..|..-... ..+....+.. .++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~ 595 (928)
T PF04762_consen 518 IDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLF 595 (928)
T ss_pred eccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEE
Confidence 74332 2233333344455555555 444567777899998776554322 1233222222 2222223332 455
Q ss_pred EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE-EEcCCeEEEEeCCc-cceeeccccCC---
Q 001258 919 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAIFETTK-LECVKQWVPRE--- 993 (1113)
Q Consensus 919 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~-~~~d~~v~v~d~~~-~~~~~~~~~~~--- 993 (1113)
.-+..|.+++ +. .. +. ..++++.++ +.+|+ +.....+++.++.. ........ +.
T Consensus 596 GLs~~~~Ly~---n~-~~-----la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~ 654 (928)
T PF04762_consen 596 GLSSNGRLYA---NS-RL-----LA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPEN 654 (928)
T ss_pred EECCCCEEEE---CC-EE-----Ee---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccc
Confidence 4455554443 11 10 10 235555553 44444 46777788888871 11111110 00
Q ss_pred -CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258 994 -SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus 994 -h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
+...+..+ ..|..|+++-....=-|..++-|.+-
T Consensus 655 ~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 655 SYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred ccccccccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence 01122222 25777777665555555566655443
No 234
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.5e-11 Score=122.37 Aligned_cols=325 Identities=14% Similarity=0.244 Sum_probs=203.7
Q ss_pred CCCEEEEEecCCcEEEEEC-CCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccc
Q 001258 585 TKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1113)
..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++.+.|++|-..|++.-+.+..........+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r----- 108 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK----- 108 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-----
Confidence 3345999999999999964 3455444443 23345788999999999999999999998876654322211110
Q ss_pred ccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceec
Q 001258 664 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 743 (1113)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 743 (1113)
.|
T Consensus 109 ----------------------------------------------------------------~~-------------- 110 (404)
T KOG1409|consen 109 ----------------------------------------------------------------DY-------------- 110 (404)
T ss_pred ----------------------------------------------------------------hh--------------
Confidence 00
Q ss_pred ccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 744 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
..|...+..+.|+-....+++.+.|..+. |.-. +.|..+.... .....++
T Consensus 111 ----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t~ 160 (404)
T KOG1409|consen 111 ----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPASA 160 (404)
T ss_pred ----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCCC
Confidence 12778888899988888899888886554 2211 1111111000 0111111
Q ss_pred EEEecCCCEEEEEe-CCeEEEEE--CCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce-eeeeec
Q 001258 824 FALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLK 899 (1113)
Q Consensus 824 l~~s~~~~~l~~~s-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~ 899 (1113)
+.+.-. +...|. .|.|.+-. ......+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.+ ....+.
T Consensus 161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 161 LQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred CceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec
Confidence 112111 334444 45544443 345677888999999999999999 88899999999999999997644 346788
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------------------------ccCCCCCCCCC-
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTPTAQ- 953 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~~~- 953 (1113)
+|.+.|..++..+--+.|++++.||.|.+|+++.........+ .....|-...+
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~ 317 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGK 317 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 9999999999988889999999999999999876543221100 00000000001
Q ss_pred CCceEEEccCCcEEEEEcCCeEEEEeCCccc-----eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 954 SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
.+...+-+....+...+..-.+|+.|.--.. ....-.++.-...|+.+.+..+-.+|+|++.|+.|+|||+..
T Consensus 318 avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 318 AVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111111222222223445556665532111 100111112245799999999989999999999999999864
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=8.3e-10 Score=109.39 Aligned_cols=237 Identities=15% Similarity=0.213 Sum_probs=159.8
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE-Ee
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AY 439 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~ 439 (1113)
...++|+.|..- +++|. |.-.+||+.+--+....+.+ ..-.-.+..|-| -.++||- ||
T Consensus 8 ~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 8 TLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred eeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence 345999999883 66665 55688999875332221110 000012222222 2344443 33
Q ss_pred CC------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEeecc--Cc
Q 001258 440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH--EA 510 (1113)
Q Consensus 440 ~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h--~~ 510 (1113)
.+ ..|.|||=....++. ++. -..+|.+|.+.++- ++..- .+.|.||... +.+.++.+... ..
T Consensus 67 g~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred CCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence 32 469999955544443 333 45789999998763 34333 6789999988 56667766533 23
Q ss_pred CEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
...+++ +..+..+|+.-| .-|.|.+-|+..... ...+..|...|.+++++.+|.
T Consensus 138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------------------- 194 (346)
T KOG2111|consen 138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------------------- 194 (346)
T ss_pred ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence 455554 555545555544 468999999876554 356667777676666666665
Q ss_pred EEEEEecCCc-EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|++.|+.+...
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7999998887 79999999999999976655678999999999999999999999999988764
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.5e-10 Score=120.56 Aligned_cols=153 Identities=10% Similarity=0.119 Sum_probs=102.6
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
..++..++|++|+ ++|. +.+..|.|++..+++.+... ....++++.|||-|.+|.+-
T Consensus 35 ~~~~v~~~S~~G~-lfA~-~~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAY-SDNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEE-EcCCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence 3478889999999 4665 45789999999988644321 11168999999999999873
Q ss_pred -----eCC-----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258 439 -----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 439 -----~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 508 (1113)
..+ -.+.+|+++++. .+. .+..-...-++..|+.|.. ++.--..+.+.+|++.+-+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~-~~s--~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGV-QRS--QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccce-ehh--heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 222 347799999943 222 2222222227999999987 4444456789999987633322 2236
Q ss_pred CcCEEEEeeeecCCceEEEE-----EecCCcEEEEEcC
Q 001258 509 EAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYD 541 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~ 541 (1113)
...|..+.+++.+.-..+++ .|.-+.|++|.+.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 77888888888754445543 3556679999776
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=4.9e-10 Score=124.01 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=173.4
Q ss_pred CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec----CCeEEEEEccccccCCCCceeeeecCee
Q 001258 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL 799 (1113)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~l 799 (1113)
+.|..|+++.... .+..+.. .........++++|+++.|.+... ++.|..|++...
T Consensus 13 ~gI~~~~~d~~~g--~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------- 72 (345)
T PF10282_consen 13 GGIYVFRFDEETG--TLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------- 72 (345)
T ss_dssp TEEEEEEEETTTT--EEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred CcEEEEEEcCCCC--CceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence 6888888843222 1211111 113345567889999999998877 468888876532
Q ss_pred cCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cceeee---e----------cCCCCCe
Q 001258 800 WQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA 862 (1113)
Q Consensus 800 w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i 862 (1113)
+|.+... .... .......++++|++++|+++. +|.|.++++.. +..... + +......
T Consensus 73 ----~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~ 146 (345)
T PF10282_consen 73 ----TGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP 146 (345)
T ss_dssp ----TTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred ----cceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence 1111000 0000 234567899999999999997 79999999986 333221 1 1123457
Q ss_pred eEEEEecCCCcEEEEEe-cCCcEEEEEcccce--ee--eeec-ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--C
Q 001258 863 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--G 933 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~--~ 933 (1113)
.++.|+| +++++++.. ....|++|++.... +. ..+. ........++|+||++++.... .+++|.++++. .
T Consensus 147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence 8999999 888777654 34589999997644 22 2222 2335578999999999887665 57889999998 3
Q ss_pred CccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--ccce--eeccccCCCCCCeeEEEECCCC
Q 001258 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~--~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
+.......................++++|||++|+++ ..+.|.+|+++ +++. +..+.. .......++++|||
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence 3222222222221111111246789999999999996 56789999983 3333 333332 24458999999999
Q ss_pred CEEEEEe-CCCcEEEEec--CCCceee
Q 001258 1008 QLVYACF-LDATVCVFSA--ANLKLRC 1031 (1113)
Q Consensus 1008 ~~l~s~~-~Dg~v~vwd~--~~~~~~~ 1031 (1113)
++|++++ .++.|.+|++ ++|.+..
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 9999887 4578999977 4666543
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=2.4e-07 Score=113.56 Aligned_cols=473 Identities=12% Similarity=0.134 Sum_probs=254.3
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEE----EccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
...+.|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-..+|.+++||||+. +++....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345689999999999999999999999999 544433 22 2223456899999999999 5555555677655
Q ss_pred EeCCCCcee------------------------eEeeccCcC------------------E----EEEeeeecCCceEEE
Q 001258 494 WDATNGAKQ------------------------YIFEGHEAP------------------V----YSVCPHHKENIQFIF 527 (1113)
Q Consensus 494 wd~~~~~~~------------------------~~~~~h~~~------------------v----~~~~~~~~~~~~~l~ 527 (1113)
-+ .+...+ ..|+|-.+. + ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 43 111111 112111000 1 122334567888888
Q ss_pred EEec---C---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec---CCcE
Q 001258 528 STAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSI 598 (1113)
Q Consensus 528 s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i 598 (1113)
+.+. . ..+++|+-+ +.....-+ ++.. --..++|-|.|+++++... ...|
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE----~v~g-----------------Le~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSE----PVDG-----------------LEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccc----cCCC-----------------ccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 8764 2 468888654 11111111 1111 1224566666666766543 4567
Q ss_pred EEEECCCCceEEEEccC--CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258 599 KFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1113)
Q Consensus 599 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1113)
.+|.- +|-.-..|... .....|..+.|++|+..|++...|. |.+|-..+-.-.++..-.
T Consensus 284 vFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~----------------- 344 (928)
T PF04762_consen 284 VFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR----------------- 344 (928)
T ss_pred EEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-----------------
Confidence 77774 34333333322 2334689999999999999987654 999987654211111100
Q ss_pred cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1113)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1113)
+ .....+..
T Consensus 345 --------------------------------------------------------------------~---~~~~~~~~ 353 (928)
T PF04762_consen 345 --------------------------------------------------------------------F---SSSESVNF 353 (928)
T ss_pred --------------------------------------------------------------------c---cCCCCCCc
Confidence 0 01112223
Q ss_pred EEEeCCC-ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEE
Q 001258 757 LIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVM 834 (1113)
Q Consensus 757 ~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~ 834 (1113)
+.|+|.. ..|...+.+|.+..+++. |+...+.. .+| |.-.++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~va 397 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGTVA 397 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC------------------CCccCceEEE
Confidence 5666643 345666665666665542 22111110 011 222344
Q ss_pred EEeCCeEEEEECCCCce-----eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee--------eeeec--
Q 001258 835 SASGGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK-- 899 (1113)
Q Consensus 835 ~~sdg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--------~~~l~-- 899 (1113)
+..+.++.+-.+..... ...+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+.
T Consensus 398 VIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD 475 (928)
T ss_pred EEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc
Confidence 44455677766654322 12333 346799999999 676788899999999998543211 11111
Q ss_pred --------ccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 900 --------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 900 --------~h~~~V~~l~~s~d~~~L~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
.-...+..++|..+...++..+.+ ..+.++++...+... ........ ...+..+...++...++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~ 550 (928)
T PF04762_consen 476 SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA-SVESSTEV----DGVVLIISSSPDSGSLY 550 (928)
T ss_pred cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce-eEEEEecc----CceEEEEeeCCCCcEEE
Confidence 123457888998887777766654 578888874432110 01111111 12334444445554344
Q ss_pred E-EcCCeEEEEeCCcccee-eccccCCCCCCeeEEEECCCCC---EEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258 969 V-VHETQLAIFETTKLECV-KQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus 969 ~-~~d~~v~v~d~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~---~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
. ..+|.+..++....... ..|.. .-+-..++...+.. .++.-+..|.+++ .+..++
T Consensus 551 ~q~~~G~v~~~~~~~~~~~~~~fp~---~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------------ 611 (928)
T PF04762_consen 551 IQTNDGKVFQLSSDGELSQIVKFPQ---PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------------ 611 (928)
T ss_pred EEECCCEEEEeecCCCccccccCCC---CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------------
Confidence 4 67888876665443321 12211 11222222222322 3444444454443 233331
Q ss_pred ccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
..+++..+ + +.+|+.......+++..+.
T Consensus 612 -~~~tSF~v--~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 -SNCTSFAV--T---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred -cCCceEEE--E---cCEEEEEecCceEEEEECc
Confidence 34554333 2 3466666667889999988
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=7.1e-11 Score=117.54 Aligned_cols=350 Identities=16% Similarity=0.243 Sum_probs=215.1
Q ss_pred ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-----eeeEeeccC------------cCEEEEeeeecCCceEE
Q 001258 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFI 526 (1113)
Q Consensus 464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l 526 (1113)
..+-|.+|.|..+|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345789999999999 89999999999999744222 223444453 35778888888888889
Q ss_pred EEEecCCcEEEEEcCCCCCee-----eeeCCCCceEEEEEcc----------CCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 527 FSTALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 527 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
+..+.|.+|++|.+....... ........+.++.... ..++++...+...+..+.++.|...+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 999999999999887544332 0111112222222211 1235666667778889999999998877
Q ss_pred EecCCcEEEEECCCC-ceEEEE--ccCC---CCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccc
Q 001258 592 AGDDFSIKFWDMDSV-QLLTSI--DADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 664 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~-~~~~~~--~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1113)
+ .|=.|.+|++.-- +..... +.+. -+..|++..|+| ..+.++..++.|+|++.|++...-+-. |
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~----h---- 252 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA----H---- 252 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc----h----
Confidence 5 4778999998632 222222 1111 123477888998 467778888889999998864411100 0
Q ss_pred cccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecc
Q 001258 665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 744 (1113)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 744 (1113)
-+++..+.
T Consensus 253 -------------------------------------------------------------sKlfEepe----------- 260 (433)
T KOG1354|consen 253 -------------------------------------------------------------SKLFEEPE----------- 260 (433)
T ss_pred -------------------------------------------------------------hhhhcccc-----------
Confidence 00000000
Q ss_pred cCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258 745 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1113)
Q Consensus 745 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l 824 (1113)
.|..+ .... +--..|..+
T Consensus 261 ---------------dp~~r-----------------------------------------sffs------eiIsSISDv 278 (433)
T KOG1354|consen 261 ---------------DPSSR-----------------------------------------SFFS------EIISSISDV 278 (433)
T ss_pred ---------------CCcch-----------------------------------------hhHH------HHhhhhhce
Confidence 00000 0000 023457789
Q ss_pred EEecCCCEEEEEeCCeEEEEECC-CCceeeeecCCCC---------------CeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 825 ALSKNDSYVMSASGGKISLFNMM-TFKTMATFMPPPP---------------AATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 825 ~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~~~~---------------~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.|+++|+++++-+--+|++||+. ..+.+.+++-|.. .-..++|+. ++.++++|+....+++|+
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 99999999999877899999994 5566666655531 124578888 788999999999999999
Q ss_pred cccceee-eeecccccC--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCc
Q 001258 889 VRVDEVK-SKLKGHSKR--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1113)
Q Consensus 889 ~~~~~~~-~~l~~h~~~--V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~ 965 (1113)
+..|... .++...... ...+ ..-+.+.+++......+|-.. +.. . ..+...+|+|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf---~----kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDF---R----KKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch---------hhh---h----hHHHhhccCCccc
Confidence 7665322 223222221 1111 112344444444432222100 000 0 2467789999999
Q ss_pred EEEEEcCCeEEEE
Q 001258 966 HFLVVHETQLAIF 978 (1113)
Q Consensus 966 ~l~~~~d~~v~v~ 978 (1113)
.+|++.-..+.+|
T Consensus 419 ~ia~aatnnlyif 431 (433)
T KOG1354|consen 419 SIAVAATNNLYIF 431 (433)
T ss_pred eeeeeecCceEEe
Confidence 9999766777665
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=8e-11 Score=134.10 Aligned_cols=221 Identities=10% Similarity=0.024 Sum_probs=137.2
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+...+.+.+|||||++++.+.. .+..|.+|++.+|+... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 33446778999999999997544432 24579999998876432 111222345689999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCc--EEEEeCCCCceeeE
Q 001258 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKT--IKVWDATNGAKQYI 504 (1113)
Q Consensus 431 dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~--i~iwd~~~~~~~~~ 504 (1113)
||+.|+.. +.+| .|.+||+.+++..+ +..+...+....|+|||+. |+..+. ++. |.++|+.++.. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999865 3344 58899999876433 4445567889999999995 544443 444 44456666644 34
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+..+.......+|+ ++|.+|+..+.+ ..|.+||+.++... .+... .......
T Consensus 326 lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~--------------------- 380 (429)
T PRK03629 326 ITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPS--------------------- 380 (429)
T ss_pred eecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCce---------------------
Confidence 44344445556665 455677665543 35788888765432 22211 1122334
Q ss_pred ecCCCCEEEEEecCCc---EEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258 582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1113)
|+|+|.+++..+.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 4555556777766553 677787 455555565443 3577888887
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.4e-10 Score=131.26 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=140.5
Q ss_pred CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001258 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 457 (1113)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 457 (1113)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 37888887654332 25567789999999999999998763 468999999988643
Q ss_pred eeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-CC-
Q 001258 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 533 (1113)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg- 533 (1113)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|++ ||..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence 25566778889999999996 3455666655 77779887765 45655666566667664 5566766553 33
Q ss_pred -cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceE
Q 001258 534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1113)
Q Consensus 534 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1113)
.|.+||+..... ..+......+....|+|||+ +++..+.+ ..|.+||+.++. .
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------------------~ia~~~~~~~~~~i~~~d~~~~~-~ 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGD---------------------LIAFTKQGGGQFSIGVMKPDGSG-E 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCeEECCCCC---------------------EEEEEEcCCCceEEEEEECCCCc-e
Confidence 577777654332 22222222333444555554 55554432 368888986554 3
Q ss_pred EEEccCCCCCCcCeEEECCCCCEEEEEECC------CcEEEEEcCCC
Q 001258 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 650 (1113)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~ 650 (1113)
..+... ..+....|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333322 136789999999998876553 24677777554
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.5e-09 Score=118.02 Aligned_cols=524 Identities=12% Similarity=0.135 Sum_probs=303.3
Q ss_pred ccCcccCCccccCCcccCCCCCCCCCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe
Q 001258 318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL 396 (1113)
Q Consensus 318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~ 396 (1113)
|+.++|..+.-..+... .........-.+-+++. |...|.-+.|+.+.+. |-+...+|.|.||-+-.|.-..
T Consensus 35 dGlLKVlKl~t~t~d~~-----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~E- 107 (1189)
T KOG2041|consen 35 DGLLKVLKLGTDTTDLN-----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCE- 107 (1189)
T ss_pred cceeEEEEccccCCccc-----ccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHH-
Confidence 67777776555443321 11111111122345555 9999999999999996 8888899999999988765322
Q ss_pred eeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC
Q 001258 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476 (1113)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~ 476 (1113)
..+-......|.+++|+.||..++....||.|.|=.++.++.... .+++. -...+.|++|
T Consensus 108 ----------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D 167 (1189)
T KOG2041|consen 108 ----------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSED 167 (1189)
T ss_pred ----------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeeccc
Confidence 223345567899999999999999999999999988877654332 23332 2457899999
Q ss_pred CCeeEEEEecCCCcEEEEeCCCC-------ceee----EeeccCcCEEEEeeeec------CCceEEEEEecCCcEEEEE
Q 001258 477 NKQLCVITCGDDKTIKVWDATNG-------AKQY----IFEGHEAPVYSVCPHHK------ENIQFIFSTALDGKIKAWL 539 (1113)
Q Consensus 477 ~~~~~l~s~s~d~~i~iwd~~~~-------~~~~----~~~~h~~~v~~~~~~~~------~~~~~l~s~~~dg~i~iwd 539 (1113)
.+ .++.+-..|.+.++|.+.. .+.- .+......|..++|... ++...++.+...|.+.+-.
T Consensus 168 ~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 168 LE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred HH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 99 4666777899999996532 1111 11112223455555321 3556788888888887775
Q ss_pred cCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEE
Q 001258 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLT 610 (1113)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~ 610 (1113)
-.+......+... -.+....|+++| ..|++++. .+.|++|.. -|+.+.
T Consensus 246 ~eND~~Pvv~dtg-m~~vgakWnh~G---------------------~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g 302 (1189)
T KOG2041|consen 246 SENDPEPVVVDTG-MKIVGAKWNHNG---------------------AVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG 302 (1189)
T ss_pred hcCCCCCeEEecc-cEeecceecCCC---------------------cEEEEccCcccccCccccceEEEecc-chhheE
Confidence 5443333332222 344455555555 45666553 235677764 577888
Q ss_pred EEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccc
Q 001258 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690 (1113)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1113)
.++..+. .|++++|-..|-.++.+- |+.|.+=+++.... ...++.-.--+...
T Consensus 303 tlkvpg~--~It~lsWEg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~TvVy~y~~----------------------- 355 (1189)
T KOG2041|consen 303 TLKVPGS--CITGLSWEGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEETVVYVYQK----------------------- 355 (1189)
T ss_pred EEecCCc--eeeeeEEcCCceEEEEEe-cceEEEEeecccce-EEEeeeEEEEEEcc-----------------------
Confidence 8877654 799999998887777654 57887766654411 11110000000000
Q ss_pred cccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEee
Q 001258 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 770 (1113)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 770 (1113)
+ -.-.-.|.+||..+.....+. -....++++..+.-.++.-.
T Consensus 356 ---------------------~-------e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~ 397 (1189)
T KOG2041|consen 356 ---------------------E-------ELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQ 397 (1189)
T ss_pred ---------------------C-------CCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEecc
Confidence 0 000135678887754332221 12344566666655556555
Q ss_pred cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCc
Q 001258 771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 850 (1113)
Q Consensus 771 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~ 850 (1113)
.++.+.-++.-. .++ ......+.+. -|..+.. ....|.-.-..-++.+++.++...+.+|.....+
T Consensus 398 d~~~i~e~s~le-~~~------~~~~l~LCNS-IGT~lD~------kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 398 DDGVIPEYSTLE-NRS------RVYFLQLCNS-IGTSLDY------KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred ccCCCcchhhhh-ccc------ceEEEeeecc-cCCcCCC------CcceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 566555431100 000 0000001110 0110000 1111222223347778888887788888753211
Q ss_pred e--------------------------------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258 851 T--------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1113)
Q Consensus 851 ~--------------------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1113)
. ..++.+...+|.+++.+. ++|.++-..|.|+-|.+...-+....
T Consensus 464 ~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y 540 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSY 540 (1189)
T ss_pred hhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeecc
Confidence 1 123344556777787764 68999999999999999886655443
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEE
Q 001258 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1113)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~ 976 (1113)
. -...|..++..-+...++...--|.+.+.|++-. .......+...+. ..|+.+.|..|+..+.+ -....+.
T Consensus 541 ~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmy 614 (1189)
T KOG2041|consen 541 P-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMY 614 (1189)
T ss_pred c-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEE
Confidence 3 4466888988878888888888888888887631 1111111111111 25777888887766655 3444566
Q ss_pred EEeCC
Q 001258 977 IFETT 981 (1113)
Q Consensus 977 v~d~~ 981 (1113)
|++-.
T Consensus 615 ifrgn 619 (1189)
T KOG2041|consen 615 IFRGN 619 (1189)
T ss_pred EecCc
Confidence 66644
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.4e-09 Score=108.97 Aligned_cols=282 Identities=9% Similarity=0.090 Sum_probs=183.6
Q ss_pred CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC---CeEEEEEccccccCCCCceeeeecCee
Q 001258 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 799 (1113)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l 799 (1113)
+..|.+|++.+.........+ .......+-++++|+++.|.++..+ |.+.-|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 568999999853322221111 2256778899999999988887665 56666654
Q ss_pred cCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cceeee--ecCCCCC----------eeE
Q 001258 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 864 (1113)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 864 (1113)
|..+|.+....... ....+.+.++++++|++|+++. .|.|.++-++. |..... ...|.+. +.+
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33334422111100 0233447899999999999997 69999999965 332211 1123332 788
Q ss_pred EEEecCCCcEEEEEe-cCCcEEEEEcccceeeeeec---ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--ccc
Q 001258 865 LAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQ 937 (1113)
Q Consensus 865 l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~--~~~ 937 (1113)
..|.| ++++|++.+ .--.|.+|++..|++...-. .-...-+.|.|+|++++....++ +++|.+|..+.. +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 888888765 23389999999776442211 23345689999999999877764 899999999883 322
Q ss_pred cccccccCCCCCCCCCCCceEEEccCCcEEEEEcC--CeEEEEeCCc--cceeeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d--~~v~v~d~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
....+...............+.+++||++|.++.. ..|.+|.+.. ++....-...-+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 22333333333333346678999999999999744 3688877653 3322111112335557899999999999998
Q ss_pred eCC-CcEEEEecC--CCcee
Q 001258 1014 FLD-ATVCVFSAA--NLKLR 1030 (1113)
Q Consensus 1014 ~~D-g~v~vwd~~--~~~~~ 1030 (1113)
+.| ..|.||..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 876 458888764 55443
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.4e-11 Score=120.88 Aligned_cols=256 Identities=12% Similarity=0.077 Sum_probs=177.8
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEe-cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
+....+|..++|.-|++.=+..+. .+..+............. +|++. ......+.|..++.. ..
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg 116 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG 116 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence 345678899999888765444444 566666666665544332 12222 234455677777764 34
Q ss_pred eEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCCCCeeEEEEecCC--CcEEEEeCCCCceeeEeec---
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG--- 507 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~--- 507 (1113)
.|++|-.+|.+.+|..+.+..-. ....+.. ...+..|.-++...+ ++++||.. ..++|||++..+.+..-+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence 67777889999999998543110 1112332 357888888887775 67779988 8899999998866554332
Q ss_pred ----cC--cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 508 ----HE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 508 ----h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
-. -+++++.|.+..+...+++++.-+.+++||.+.... +..+...... +.++
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---------------------is~~ 253 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---------------------ISST 253 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---------------------ceee
Confidence 12 234556666553357899999999999999986433 2234444444 4445
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCceEEE-EccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
...|+++++++|...+.+..||++.++.... +.+- .+.|+++..+|.++++++++-|..+||+|+.+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 5555666899999999999999999988776 5444 457999999999999999999999999999885
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=8.4e-11 Score=134.75 Aligned_cols=220 Identities=12% Similarity=0.091 Sum_probs=136.7
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
.+..|...+.+.+|||||++ |+..+. ...|.+||+.+++... +..+.+...+++||
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 256 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFS 256 (433)
T ss_pred EeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceEC
Confidence 44457788999999999997 454443 3469999998876543 22233345678999
Q ss_pred CCCCeEEE-EeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCceee
Q 001258 430 PDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQY 503 (1113)
Q Consensus 430 pdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~--i~iwd~~~~~~~~ 503 (1113)
|||+.|+. .+.+| .|.+||+.+++.. .+..|.......+|+|||+. ++.++ .++. |.++|+.+++...
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE
Confidence 99998864 45554 5999999988643 35556666678999999995 44443 4444 6667776665433
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCC---cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
+..+.......+|++ +|++|+..+.++ .|.+||+.++... .+. +........|+|||+
T Consensus 331 -lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~-------------- 391 (433)
T PRK04922 331 -LTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS-------------- 391 (433)
T ss_pred -eecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--------------
Confidence 322333344566654 556776654432 5899998765433 222 111233445555554
Q ss_pred EecCCCCEEEEEec---CCcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258 581 QFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1113)
+++..+. .+.|++++... .....+..+. ..+...+|+|
T Consensus 392 -------~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 -------MVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred -------EEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 5555443 34688888854 4445554332 2466777876
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.7e-10 Score=132.18 Aligned_cols=215 Identities=13% Similarity=0.156 Sum_probs=136.8
Q ss_pred CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001258 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 457 (1113)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 457 (1113)
..|.+||...+... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654332 24456778999999999999998764 3469999999886532
Q ss_pred eeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCc
Q 001258 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK 534 (1113)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 534 (1113)
+..+.+...+.+|+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+|++ ||..|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence 3344555668999999996 334545555 599999988764 44555555555667654 556676655 4555
Q ss_pred --EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceE
Q 001258 535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1113)
Q Consensus 535 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1113)
|.++|+.++.. ..+..........+ |+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~---------------------~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARAS---------------------VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEE---------------------ECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55556554332 22222222222344 44555566654433 26999999887755
Q ss_pred EEEccCCCCCCcCeEEECCCCCEEEEEECC---CcEEEEEcCC
Q 001258 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 649 (1113)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 649 (1113)
.+.. +. ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3332 11 34567999999988877653 3466777643
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=9.5e-13 Score=145.39 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=147.4
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
.|+..-+|++||-+.++ |+.|+..|.|+++++.+|.... ...+|...|+.+.=|.||..+
T Consensus 1099 d~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~-------------------s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE-------------------SVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred ccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-------------------cccccccccccccccCCccee
Confidence 37788899999999996 9999999999999999997665 367899999999999999998
Q ss_pred EEEeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-ec---cC
Q 001258 436 GVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG---HE 509 (1113)
Q Consensus 436 as~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---h~ 509 (1113)
++.+.-. ...+|++.+- .....++. .-.++.|+....+ -+.|..-..+.+||++++.++.++ .+ ..
T Consensus 1159 Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 8765433 4789998752 22222333 4568899877553 333444457889999999887763 22 11
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
..-++..|+|.. .+++- || .+||++..+.+..+..-.. ...-.|+|.|+.+
T Consensus 1231 y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~----------------------~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD----------------------YGGGGFHPSGNEV 1281 (1516)
T ss_pred hhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee----------------------cccccccCCCceE
Confidence 122444555543 44442 44 5799987655544432110 0112467777778
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
+.-++ |||+++.+.++....-.. ..+.|+..|..++..
T Consensus 1282 IINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1282 IINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Eeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 87664 999999988877654432 568888888776643
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1.4e-09 Score=120.48 Aligned_cols=252 Identities=14% Similarity=0.210 Sum_probs=160.7
Q ss_pred CCCccEEEEecCCCEEEEEeC-----CeEEEEECCCC--ce--eeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE
Q 001258 818 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~sd-----g~i~vwd~~~~--~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw 887 (1113)
......++++|++++|.+... +.|..|++... +. +............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 345667999999999998863 57988888753 22 233332344567899999 788887776 58999999
Q ss_pred Eccc-ceeeee---ec----------ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcc--ccccccccCCCCCC
Q 001258 888 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEK--QKNRFLQIPTGRTP 950 (1113)
Q Consensus 888 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~--~~~~~~~~~~~~~~ 950 (1113)
++.. +.+... +. .-.....++.|+||+++|++... ...|.+|+++.... ..........+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433322 11 11244678999999999887753 34699999987552 11122233333
Q ss_pred CCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--ccc--eeecccc---CCC-CCCeeEEEECCCCCEEEEEe-CCCcE
Q 001258 951 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVP---RES-SAPITHATFSCDSQLVYACF-LDATV 1019 (1113)
Q Consensus 951 ~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~--~~~~~~~---~~h-~~~v~~l~~s~dg~~l~s~~-~Dg~v 1019 (1113)
...+.++|+|||+++++. .++.|.+|++. ++. .+..... ... ......|+++|||++|++.. .++.|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 345899999999999884 56789999988 432 2222211 111 23688999999999988776 45779
Q ss_pred EEEecC--CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe-CCCcEEEEeccCCCccc
Q 001258 1020 CVFSAA--NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus 1020 ~vwd~~--~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~ 1083 (1113)
.+|+++ ++++. .+. ..+ .+...|..++++| +|++|+++. .+++|.+|++....+.|
T Consensus 270 ~vf~~d~~~g~l~-~~~---~~~---~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 270 SVFDLDPATGTLT-LVQ---TVP---TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEECTTTTTEE-EEE---EEE---ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEEecCCCceE-EEE---EEe---CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 999993 34432 221 011 1123355688888 678877666 56799999885444333
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-10 Score=133.32 Aligned_cols=223 Identities=15% Similarity=0.129 Sum_probs=133.8
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+...+.+.+|||||++++++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 4456788999999999999744443222 359999999886543 222234566899999
Q ss_pred CCCeEEE-EeCCCeEEEEEc--cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCceeeEe
Q 001258 431 DGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYIF 505 (1113)
Q Consensus 431 dg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~ 505 (1113)
||+.|+. .+.++...||.+ .++. .+ .+..|...+....|+|||+.+ ++++..++...||.+ .++.. ..+
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEECCCCce-EEE
Confidence 9999875 567777666654 4443 32 355566667788999999952 333444566667754 44443 222
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCC---cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 582 (1113)
..+.......+|+ ++|++|+..+.++ .|.+||+.++.... +.. ........|+|||+
T Consensus 324 t~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~---------------- 383 (427)
T PRK02889 324 TFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR---------------- 383 (427)
T ss_pred ecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC----------------
Confidence 2222233345554 5667887766554 59999988754332 221 12223445555555
Q ss_pred cCCCCEEEEEecC-C--cEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258 583 DTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1113)
Q Consensus 583 ~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 629 (1113)
.|+..+.+ | .+++.+. ++.....+..+. ..+...+|+|-
T Consensus 384 -----~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp~ 425 (427)
T PRK02889 384 -----YILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGPF 425 (427)
T ss_pred -----EEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCCC
Confidence 55554432 2 3555566 455555554332 24677788773
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=4e-09 Score=112.76 Aligned_cols=203 Identities=11% Similarity=0.099 Sum_probs=123.4
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee---
Q 001258 823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--- 895 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~--- 895 (1113)
.++++|||++|++.. +..|.+.|+.+++.+.++..... ..-...+. +. +. +-+.||......+.+ |+..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEee
Confidence 467777877777664 57788888888887777654221 11111211 11 11 122344443333222 1111
Q ss_pred -eeecccccCeEE-EEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC----CCCCCCCceEEEccCCcEEE
Q 001258 896 -SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 896 -~~l~~h~~~V~~-l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~spdg~~l~ 968 (1113)
..+.+-..++.. -.|++ ||+++..... |+|.+-|+...+............. ....+....++++++|++++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111110011100 03455 8888776666 9999999765443322222221111 01113444599999999988
Q ss_pred E-Ec--C--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258 969 V-VH--E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 969 ~-~~--d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+ .. . +.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.|+|..+++.+..+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8 31 1 4799999999999998875 45899999999999 777666 5788999999999999887
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.2e-10 Score=116.52 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=103.0
Q ss_pred CCccEEEEecC--CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258 819 EAVPCFALSKN--DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1113)
Q Consensus 819 ~~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1113)
-.++++.|-+. ...||++. -+.+++||...+ +++..+.-...+++++...| +++++.+|..-|.+..||++.+++
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 35567778776 77888888 699999999854 45677777788999999999 999999999999999999999998
Q ss_pred eee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258 895 KSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1113)
Q Consensus 895 ~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~ 936 (1113)
+.. +.+-.+.|++|..+|.+++|+++|-|..|||+|+++.+.
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 876 899999999999999999999999999999999999544
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.1e-10 Score=116.13 Aligned_cols=155 Identities=12% Similarity=0.225 Sum_probs=108.1
Q ss_pred eEEEEecCCCcEEEEEec----------CCcEEEEEccc-ceeeeeecc-cccCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001258 863 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 928 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~L~s~--s~D~~v~i 928 (1113)
..+.|++ .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.++.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 13455555532 233344432 34579999999999987654 45789999
Q ss_pred EeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc----CCeEEEEeCCccceeeccccCCCCCCeeEEEEC
Q 001258 929 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus 929 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~----d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
||++. +. ...... ..+..+.|||+|++++++. .|.+.+||..+.+.+.... ...++.++||
T Consensus 88 yd~~~-~~----i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-KK----IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-cE----eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99973 11 111111 2467899999999999842 4679999999999887764 3457899999
Q ss_pred CCCCEEEEEeC------CCcEEEEecCCCceeeecC
Q 001258 1005 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 1005 ~dg~~l~s~~~------Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
|||++++++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 66665543
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.1e-10 Score=130.37 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=138.5
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....|...+.+.+|||||++|+.+.. .+..|.+||+.+++... +..+.+.+.+.+|||
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 255 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP 255 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence 44458889999999999997444432 24689999998886532 334556778899999
Q ss_pred CCCeEEE-EeCCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec-CC--CcEEEEeCCCCceeeE
Q 001258 431 DGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIKVWDATNGAKQYI 504 (1113)
Q Consensus 431 dg~~las-~~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d--~~i~iwd~~~~~~~~~ 504 (1113)
||+.|+. .+.++. |.+||+.+++.. .+..+........|+|||+. ++..+ .+ ..|.+||+.++.. ..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence 9998864 455554 777898887643 35566667788999999995 44333 33 3688888776554 44
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+..+...+....|++ +|+.|+..+.+ ..|.+||+..... ..+.. ...+....|+|||+
T Consensus 329 lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~--------------- 389 (435)
T PRK05137 329 ISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR--------------- 389 (435)
T ss_pred eecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC---------------
Confidence 443445566667654 55677666543 3577788754332 22221 22344555555555
Q ss_pred ecCCCCEEEEEec-C-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258 582 FDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 582 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1113)
.++..+. . ..++++|+..+.. ..+... ..+...+|+|
T Consensus 390 ------~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 390 ------VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred ------EEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 4544332 1 3688888866544 344322 2356677776
No 254
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.9e-10 Score=129.73 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=123.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~ 492 (1113)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 459999999887543 3334456778999999995 344667788766
Q ss_pred EEeCC-CCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEE
Q 001258 493 VWDAT-NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 493 iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
||.+. .+.....+..+........|++ ||..|+..+ .+|...+|.+.... ....+.........
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~----------- 332 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTS----------- 332 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCc-----------
Confidence 66543 2333555655655556667654 556666554 35667777654221 11111111111222
Q ss_pred eccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 640 (1113)
..|+|+|++++..+.++ .|.+||+.+++... +... .......|+|||+.|+.++.++
T Consensus 333 ----------~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 333 ----------PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ----------eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecC
Confidence 34555556676655443 69999998877543 3222 1246789999999998887654
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=3.1e-10 Score=113.06 Aligned_cols=280 Identities=14% Similarity=0.225 Sum_probs=172.9
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS- 433 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 433 (1113)
+...+-|.++.|..+|.+ ||+|..+|.|.++.-..-.. ....|+. ..+...+.+-....-.-...|..+.|.+++.
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t-~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQT-EFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeee-eeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 345678999999999996 99999999999997543222 1111110 0000011110000111234789999998654
Q ss_pred -eEEEEeCCCeEEEEEccCCceee--------------------------------eeee-eecccCCeeEEEEcCCCCe
Q 001258 434 -LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNKQ 479 (1113)
Q Consensus 434 -~las~~~d~~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~~~~~ 479 (1113)
.++..+.|.+|++|.+....... +... -.+|.--|++|.++.|..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999886422110 0001 135777899999999998
Q ss_pred eEEEEecCCCcEEEEeCCCCceee---Eeec-----cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee----
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQY---IFEG-----HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---- 547 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---- 547 (1113)
.++++ +|=.|.+|+++--..-. .++. -..-|++..|+|... ++++-.+..|+|++.|++......
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 45555 57889999987432212 1222 234578888988765 688888889999999998532211
Q ss_pred eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC-CCCceEEEEccCCCC--------
Q 001258 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL-------- 618 (1113)
Q Consensus 548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-------- 618 (1113)
.+..+..+. . +.+...--..|.-+.|+.+|+++++-. --+|++||+ ...+++.++..|...
T Consensus 255 lfEepedp~--------~-rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 255 LFEEPEDPS--------S-RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhccccCCc--------c-hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 111111111 0 001111112444566677777776543 368999999 445666666544311
Q ss_pred --CCc---CeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 619 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 619 --~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
..| ..++|+.++.++++|+..+.+++++...|.
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 112 358999999999999999999999977763
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=9.8e-08 Score=99.56 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=134.7
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-cEEEEEcccceeeeeecccccCeEE
Q 001258 829 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 829 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
+|.+++..+.|+..+.+...+-.++. ++...|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78899999999998888766554433 3566788888887 677889999999 99999998776 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC----CeEEEEeCCc
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 982 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d----~~v~v~d~~~ 982 (1113)
+..++||++++.+.....+.+.|++++.... +..... +-|+.+.|+|+++++|.+ -+ ..|+++|..+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~-----idkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL-----IDKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE-----eccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999998999999999976421 122222 478999999999999986 23 4799999999
Q ss_pred cceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 983 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
++......+ .+.=.+-+|.||+++|.--+
T Consensus 479 ~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTP---TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCC---cccccCcccCCCCcEEEEEe
Confidence 988776554 33345678999999987554
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=9e-09 Score=108.52 Aligned_cols=294 Identities=12% Similarity=0.127 Sum_probs=184.2
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc-EEEEecCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND 830 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~-~l~~s~~~ 830 (1113)
..|..+.|+|.+++|.+-.....+ +. ..+..+... ...+.+||..+|.++...... ....... -+.|+.+.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~---~p-e~e~sp~~~---~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D 143 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPII---EP-EIEISPFTS---KNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD 143 (561)
T ss_pred CCceecccCcccceeeeeccCCcc---Ch-hhccCCccc---cCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence 356677778888877665544332 00 001111111 014668888888866542211 1222234 67899999
Q ss_pred CEEEEEeCCeEEEEECCCCcee-eeecCC-CCCeeEEEEecC-CCcEEEE-----EecCCcEEEEEcccceeeeeecccc
Q 001258 831 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS 902 (1113)
Q Consensus 831 ~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~~i~~l~~s~~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l~~h~ 902 (1113)
+++|--....+.|+++ +.... ..+..- ...|....|+|. ++..||. +..+++++||.+..++.+.+..-..
T Consensus 144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 9888777788999997 32221 111111 356888999993 2334444 4577899999998776665433323
Q ss_pred cCeEEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-
Q 001258 903 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 970 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s-----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~- 970 (1113)
-.=..+.|.+.|++|..-- ....++|+++..... .+..+.. ++|...+|.|+++.+++.
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i------~V~~~~~---~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI------PVEKDLK---DPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc------ceecccc---ccceeeeecccCCceeEEe
Confidence 3335678888888766421 124578888774221 1111212 489999999999988873
Q ss_pred --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceee-ecCCCcccCCCcc
Q 001258 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1044 (1113)
Q Consensus 971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~-~~~~~~~~~~gh~ 1044 (1113)
.+-.+.++|++.. ....+. ...=..+.|||.+++++.++-| |.|-+||........ .+. +..
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~n 361 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GLN 361 (561)
T ss_pred cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------cCC
Confidence 5678999999866 433333 4455678899999999987766 679999998765554 443 211
Q ss_pred cCccceEEEEeCCCCCEEEEEe------CCCcEEEEeccCCC
Q 001258 1045 SNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE 1080 (1113)
Q Consensus 1045 ~~v~~i~~~~~p~d~~~l~s~~------~Dg~v~vW~~~~~~ 1080 (1113)
.-.+-|+| |+.++.+.. .|..+.+|++...+
T Consensus 362 ----~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 362 ----TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ----ceEeeccC-CceEEEecCCCcccccCcceEEEEecCch
Confidence 11367898 677765543 37899999998776
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.4e-09 Score=111.57 Aligned_cols=295 Identities=12% Similarity=0.136 Sum_probs=186.7
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
..|.-+.|||..++|++-+..-...-|+-. ....+.+||+.+|.+.............-.-..||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 346778888888888886654322222100 001245667777765554322101111223468999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEcccceeeeeecccccCeE
Q 001258 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 906 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1113)
++|.-..+.|.||+..+...+-.-.-....|....||| .+++||.=... .++.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999877554433333456789999999 88888865432 3677888888888877666654445
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--Ec--C
Q 001258 907 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 972 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~--d 972 (1113)
.|-|-.+|.+|+.--. =..+.|+.+...... -........|...+|-|.|..+++ +. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp--------ve~velke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP--------VEVVELKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC--------ceeeecchheeeeeeccCCCeEEEEEccccc
Confidence 6778888888875321 123456665542221 111111136788999999999888 32 3
Q ss_pred CeEEEEeCCc-c---ceeeccccCCCCCCeeEEEECCCCCEEEEEe---CCCcEEEEecCCCceeeecCCCcccCCCccc
Q 001258 973 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1113)
Q Consensus 973 ~~v~v~d~~~-~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~ 1045 (1113)
.++.+|.+++ . +++..+. ....+.+.|+|.|++++.+. ..|.+..+|..-...... +|..
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~---------~~~e 536 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT---------ASPE 536 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc---------cCcc
Confidence 4788888873 2 2333332 35678899999999988654 468899999875332221 2222
Q ss_pred CccceEEEEeCCCCCEEEEEeC------CCcEEEEeccCCC
Q 001258 1046 NVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1080 (1113)
Q Consensus 1046 ~v~~i~~~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1080 (1113)
+-....+-|.| -|++++++++ |..-++|++....
T Consensus 537 h~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 537 HFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred ccccccceECC-CCCEEEEeeehhhhccccceEEEEeecHH
Confidence 22222488999 5899999876 5567888876543
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=7.2e-10 Score=110.70 Aligned_cols=216 Identities=12% Similarity=0.120 Sum_probs=144.6
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEc-cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.+.||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 57899999999999998888999999999999954 344433221 113356789999999888 6888888899887
Q ss_pred EeCC----CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258 494 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 494 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
+.+. ....++....|...|..+.|+..+ .++++.+.|..+.---.+.+..+-.+... +.+..++
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~----- 162 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQ----- 162 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEee-----ccCCCCc-----
Confidence 7654 344556677899999999877655 68999999887743333332222111100 0000000
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECC--CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
+.- .+...|...|.|..-.+. .-.++..+.++ ...+.+++|.+....|.+|..|..+.+||+
T Consensus 163 ------------~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 163 ------------FDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred ------------eee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 000 024445555666555443 33455566544 668999999999999999999999999999
Q ss_pred CCCccceeccccccc
Q 001258 648 SDGIRLLRTFENLAY 662 (1113)
Q Consensus 648 ~~~~~~~~~~~~~~~ 662 (1113)
.-.......+.+|..
T Consensus 227 gg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 227 GGRKGTAYELQGHND 241 (404)
T ss_pred cCCcceeeeeccchh
Confidence 766444444444443
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=3.9e-10 Score=112.28 Aligned_cols=151 Identities=20% Similarity=0.417 Sum_probs=105.1
Q ss_pred EEEEEcCCCCeEEEEEec---------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 362 MSMDFHPVQQTLLLVGTN---------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
..+.|+|+|++|++.... -|...||.+.... .+... +.....++|.+++|+|+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----------------~~~~~-i~l~~~~~I~~~~WsP~g 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----------------IPVES-IELKKEGPIHDVAWSPNG 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----------------Cccce-eeccCCCceEEEEECcCC
Confidence 568899999987776652 1234444442211 11111 122334579999999999
Q ss_pred CeEEEE--eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCceeeEeec
Q 001258 433 SLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 433 ~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~ 507 (1113)
+.||+. ..++.|.+||++ ++.+. .+ +...++.|.|+|+|+ +++.++. .|.|.+||+++.+.+....
T Consensus 72 ~~favi~g~~~~~v~lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~- 142 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE- 142 (194)
T ss_pred CEEEEEEccCCcccEEEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence 998765 356789999997 33333 33 356789999999999 6776653 4679999999888887765
Q ss_pred cCcCEEEEeeeecCCceEEEEEec------CCcEEEEEcC
Q 001258 508 HEAPVYSVCPHHKENIQFIFSTAL------DGKIKAWLYD 541 (1113)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~ 541 (1113)
|. .+..++|+| +|+++++++. |+.++||+..
T Consensus 143 ~~-~~t~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 143 HS-DATDVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cC-cEEEEEEcC--CCCEEEEEEeccceeccccEEEEEec
Confidence 33 467788764 5688888864 7889999875
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=1.8e-08 Score=106.40 Aligned_cols=133 Identities=11% Similarity=0.147 Sum_probs=93.0
Q ss_pred CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceE
Q 001258 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 958 (1113)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 958 (1113)
...++|+++.... +....+-.++|...+|.|+++.+++.+ .+..+.++|+... .....++. .=..+
T Consensus 254 esnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~ 321 (561)
T COG5354 254 ESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTI 321 (561)
T ss_pred cceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------ccccc
Confidence 3568888887433 333335678999999999887766554 7888999999873 11222222 23578
Q ss_pred EEccCCcEEEE-Ec---CCeEEEEeCCccceee-ccccCCCCCCeeEEEECCCCCEEEEEe------CCCcEEEEecCCC
Q 001258 959 QFHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANL 1027 (1113)
Q Consensus 959 ~~spdg~~l~~-~~---d~~v~v~d~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~------~Dg~v~vwd~~~~ 1027 (1113)
.|+|.++++++ +. .|.+.+||....-.+. .+. .....-+.|+||+.++.+.. .|..|.|||+...
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999999988 43 3689999987654443 443 23445567999999988765 3788999999754
Q ss_pred ce
Q 001258 1028 KL 1029 (1113)
Q Consensus 1028 ~~ 1029 (1113)
..
T Consensus 398 ~~ 399 (561)
T COG5354 398 KV 399 (561)
T ss_pred hh
Confidence 43
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=5.5e-08 Score=99.27 Aligned_cols=256 Identities=13% Similarity=0.204 Sum_probs=170.3
Q ss_pred CCCCccEEEEecCCCEEEEEe----CCeEEEEECCC--Cceee--eecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE
Q 001258 817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw 887 (1113)
....++-++++|+++.|.++. +|.|..|.++. |+... .......+-+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999998885 36788887764 44321 1222223348899999 888888876 45799999
Q ss_pred Eccc-ceeee--eecccccC----------eEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258 888 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 888 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~L~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1113)
-+.. |.+.. .+..|.+. +-...|.|++++|++.+ .| .|.+|+++.+............+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC-----
Confidence 9865 43221 22335554 78889999999999886 34 49999999776554444444444
Q ss_pred CCCceEEEccCCcEEEEE--cCCeEEEEeCCcc--ce--ee---ccccCC-CCCCeeEEEECCCCCEEEEEeC-CCcEEE
Q 001258 953 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--EC--VK---QWVPRE-SSAPITHATFSCDSQLVYACFL-DATVCV 1021 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~--~~--~~---~~~~~~-h~~~v~~l~~s~dg~~l~s~~~-Dg~v~v 1021 (1113)
...+.+.|+|++++..+. -+++|.+|..+.. +. ++ .+..+- -......|.+++||++|++... ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 356999999999988873 6789999998763 21 11 111111 1456788999999999998763 246888
Q ss_pred EecCC--CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-CcEEEEeccCCCccccCCC
Q 001258 1022 FSAAN--LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPP 1087 (1113)
Q Consensus 1022 wd~~~--~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~ 1087 (1113)
|.++. +++.. +. . -......|-.+.+.| +|++|+++..| .+|.++.+....+.+....
T Consensus 271 f~V~~~~g~L~~-~~---~---~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 271 FSVDPDGGKLEL-VG---I---TPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEcCCCCEEEE-EE---E---eccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 87753 33221 11 0 111223344688888 56777776665 5899998876665555443
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=3.6e-09 Score=122.08 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=138.1
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC---CcEEEEEcccceeeeeecccccCeEEEEEcCCCC
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1113)
..|.++|..... .+.+..+...+...+|+| ||++|+.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 358888876443 445555666788999999 88888877644 47999999887643 3344556677899999998
Q ss_pred EEEE-EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC----CeEEEEeCCccceeec
Q 001258 916 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 988 (1113)
Q Consensus 916 ~L~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d----~~v~v~d~~~~~~~~~ 988 (1113)
.|+. .+.++ .|++||+.++.... ... +. .......|+|||++|+.+.+ ..|.++++.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-----l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-----LTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-----CCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58889988754321 111 11 12456789999999887422 2688888887765433
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEeCCC---cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 989 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg---~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++... .+. .. .... ...|+| ||+.|+..
T Consensus 318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~-------~~-~~~~--~p~~sp-dg~~l~~~ 382 (417)
T TIGR02800 318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT-------DT-GLDE--SPSFAP-NGRMILYA 382 (417)
T ss_pred e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc-------CC-CCCC--CceECC-CCCEEEEE
Confidence 2 2345677889999999999888776 7999999886543 222 11 1111 257888 67777776
Q ss_pred eCCCc
Q 001258 1066 LSDGG 1070 (1113)
Q Consensus 1066 ~~Dg~ 1070 (1113)
+.++.
T Consensus 383 ~~~~~ 387 (417)
T TIGR02800 383 TTRGG 387 (417)
T ss_pred EeCCC
Confidence 66653
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=3.8e-08 Score=105.29 Aligned_cols=237 Identities=9% Similarity=0.070 Sum_probs=149.4
Q ss_pred EecCCCEEEEEe-----------CCeEEEEECCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-c-CCcEE
Q 001258 826 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 885 (1113)
Q Consensus 826 ~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~d~~~la~g~-~-dg~v~ 885 (1113)
+||||+.|+++. ++.|.+||..+++.+..+..... ....++++| ||++|.+.. . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999887664 37799999999999988764322 234789999 888888765 4 78999
Q ss_pred EEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC-ceEEEcc-C
Q 001258 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D 963 (1113)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~sp-d 963 (1113)
+.|+.+++.+.++.--. ...-...+.+..+ .-+.||......++...........+..+... .+ ..-.|++ |
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence 99999999988776421 2222222222222 12334444443333222111111111111000 00 0114456 9
Q ss_pred CcEEEEEcCCeEEEEeCCc-----cceeeccccC-----CCCCCeeEEEECCCCCEEEEEeC----------CCcEEEEe
Q 001258 964 QIHFLVVHETQLAIFETTK-----LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL----------DATVCVFS 1023 (1113)
Q Consensus 964 g~~l~~~~d~~v~v~d~~~-----~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~vwd 1023 (1113)
|+++.++.+|.|.+.|+.+ .+....+... -..+.+.-+++++|++.+++... .+.|.++|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 9999998889999999543 2322222111 01333445999999999888542 25799999
Q ss_pred cCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeccCCC
Q 001258 1024 AANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1080 (1113)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1080 (1113)
..+++.+.++.. | ..+. .++++| |++ +|++.. .++.|.+.|..+++
T Consensus 286 ~~t~kvi~~i~v------G--~~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGKRLRKIEL------G--HEID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCCeEEEEEeC------C--Ccee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999988762 2 1233 488888 677 766555 68899999999987
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=5.5e-09 Score=120.50 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=122.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--c
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~ 490 (1113)
+..+...+...+|||||++|+.+..+ ..|.+||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987643 479999999886432 3445667788999999995 334455444 5
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
|.+||+.++.. ..+..+........|++ +|..|+..+. ++ .|.++|+.+.+. ..+..........
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~-------- 327 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP-------- 327 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe--------
Confidence 88999887754 34444444444556654 5566665543 34 466777664332 2222222333333
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 640 (1113)
.|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||+.|+..+.++
T Consensus 328 -------------~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 328 -------------SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -------------EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 4555555677766655 7899998876543 332221 235678999999888887765
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.6e-09 Score=120.19 Aligned_cols=222 Identities=11% Similarity=0.041 Sum_probs=129.0
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+...+.+..|||||++++.+...++ .|.+||+.+++.... ....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECC
Confidence 34456778999999999998555544343 588889988765321 11122334689999
Q ss_pred CCCeEEEE-eCCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceeeEe
Q 001258 431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1113)
Q Consensus 431 dg~~las~-~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~ 505 (1113)
||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 99988764 55664 777888887643 34456666788999999995 333443344 46667777776433 2
Q ss_pred eccCcCEEEEeeeecCCceEEEEEec-CCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~ 582 (1113)
..+.......+|+ +||++|+..+. ++. |.++|+.++... .+... .......|+|||
T Consensus 346 t~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG----------------- 404 (448)
T PRK04792 346 TFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG----------------- 404 (448)
T ss_pred ecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC-----------------
Confidence 2122222334555 45566665544 444 444566554322 11111 111223455554
Q ss_pred cCCCCEEEEEe-cCC--cEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258 583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1113)
+.++..+ .++ .+++++. +|.....+.... ..+...+|+|
T Consensus 405 ----~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp 446 (448)
T PRK04792 405 ----TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP 446 (448)
T ss_pred ----CEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence 4555433 333 3777786 455555565432 2466778876
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.8e-09 Score=119.77 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=131.2
Q ss_pred CCCCcEEEEEcCCCCeE--EEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~l--l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
....+..=+|||||+.+ +++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 45566778999999862 23444443 57788888776543 22233345568999999
Q ss_pred CeEEEEeC-----CCeEEEEEccCCc--eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe--CCC-Ccee
Q 001258 433 SLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD--ATN-GAKQ 502 (1113)
Q Consensus 433 ~~las~~~-----d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd--~~~-~~~~ 502 (1113)
+.||..+. +..+.+|++.++. .... ...++.+.....+|+|||+. ++++...++...+|. +.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccce
Confidence 99987653 3335557776532 1221 12223344577899999995 233334566555554 432 3334
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeE
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 579 (1113)
..+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++... +......+....|+|||+
T Consensus 320 ~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~------------- 383 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL------------- 383 (428)
T ss_pred EEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC-------------
Confidence 55555555666677765 45667665443 368999988765433 222223345566666665
Q ss_pred EEecCCCCEEEEEe---cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258 580 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1113)
Q Consensus 580 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 629 (1113)
.|+... ....|++||+.+++........ ..+...+|+|-
T Consensus 384 --------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~ 425 (428)
T PRK01029 384 --------HLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAF 425 (428)
T ss_pred --------EEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCC
Confidence 444322 2467889999887765544322 23567788874
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=7.8e-09 Score=119.21 Aligned_cols=224 Identities=11% Similarity=0.074 Sum_probs=132.6
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
......+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 334556788899999999999855554333 368999998886543 1222334557899
Q ss_pred cCCCCeEEE-EeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceee
Q 001258 429 SPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQY 503 (1113)
Q Consensus 429 spdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~ 503 (1113)
||||++|+. .+.++ .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|.++|+.+++...
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE
Confidence 999999885 44444 5888899987643 244566667788999999962 33333333 57778887776433
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
+...........|++ +|..|+..+. ++ .|.+||+.++.... +.. ........|+|||+
T Consensus 326 -lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~-------------- 386 (430)
T PRK00178 326 -VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGT-------------- 386 (430)
T ss_pred -eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCC--------------
Confidence 221112223345554 5566766554 33 47788887654322 211 11112334555554
Q ss_pred EecCCCCEEEEEec-C--CcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258 581 QFDTTKNRFLAAGD-D--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1113)
+++..+. + ..|++++... .....+.... ..+...+|+|
T Consensus 387 -------~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 387 -------MLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred -------EEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 5555443 2 3467777743 3334444322 2456677776
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.2e-08 Score=104.36 Aligned_cols=320 Identities=11% Similarity=0.164 Sum_probs=199.3
Q ss_pred eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----------CcEEEEE
Q 001258 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 646 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd 646 (1113)
+.+.|+|.|.+|++-...| |.+|--.+...++.+... .|.-+.|||..+||++-+.. ..++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3466666666777766544 678987766666666432 57889999999999987542 3466666
Q ss_pred cCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCce
Q 001258 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1113)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1113)
+.+| ...+.+.
T Consensus 289 I~tG-~lkrsF~-------------------------------------------------------------------- 299 (698)
T KOG2314|consen 289 IATG-LLKRSFP-------------------------------------------------------------------- 299 (698)
T ss_pred cccc-chhccee--------------------------------------------------------------------
Confidence 6666 3332221
Q ss_pred eeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc
Q 001258 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1113)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 806 (1113)
.+.- ....-.-+.||.|+++++.-..| .|.||+... ..+.|..+
T Consensus 300 ---------------~~~~----~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~Ks-- 343 (698)
T KOG2314|consen 300 ---------------VIKS----PYLKWPIFRWSHDDKYFARMTGN-SISIYETPS--------------FMLLDKKS-- 343 (698)
T ss_pred ---------------ccCC----CccccceEEeccCCceeEEeccc-eEEEEecCc--------------eeeecccc--
Confidence 1100 00111235688899988776664 677776432 11111111
Q ss_pred ccccccCCCCCCCCccEEEEecCCCEEEEEe---C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-
Q 001258 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 879 (1113)
Q Consensus 807 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~- 879 (1113)
+ .-..|....|+|.+..||.-. + ..+.+..+.+++.+++-.-+.-.-..+-|-. .|.+|+.--
T Consensus 344 -l--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 344 -L--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred -c--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 0 234578889999999998765 1 4588888888888877665554445566766 677776532
Q ss_pred ---------cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCC
Q 001258 880 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG 947 (1113)
Q Consensus 880 ---------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1113)
.-..+.|+.+.....--..-.-...|...+|-|.|..+++-+. -.++.+|.+++... ...+......
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence 1123555555543322222234567899999999988776554 35789999885222 1222222222
Q ss_pred CCCCCCCCceEEEccCCcEEEEE----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC------C
Q 001258 948 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------A 1017 (1113)
Q Consensus 948 ~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------g 1017 (1113)
.....+.|+|.|++++++ ..|.+..+|..-..+...-.+ . -...+.+.|.|.|+|+++++.- .
T Consensus 493 -----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 -----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred -----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhcccc
Confidence 245789999999999873 578899999885333332211 2 2356789999999999998853 3
Q ss_pred cEEEEecC
Q 001258 1018 TVCVFSAA 1025 (1113)
Q Consensus 1018 ~v~vwd~~ 1025 (1113)
--++|+..
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 35566654
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=6.8e-09 Score=111.99 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=147.2
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeeecCC---CCCeeEEEEe------c-------------CCCcEEEEEecCCcE
Q 001258 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 884 (1113)
Q Consensus 828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------~-------------~d~~~la~g~~dg~v 884 (1113)
|-..++|... ||.+++|+...++....|.+. .+..++..|. | .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456777776 899999999988887776532 2334444442 1 134478889999999
Q ss_pred EEEEcccceeeeeec--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258 885 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 962 (1113)
.+|++..++....+. .|.+.|+++.++.+-..|.|++.|+.+..|+...... .....+..+ .+..++++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence 999999999888885 6999999999999999999999999999999988432 333333332 678999999
Q ss_pred CCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCC-----CCEEEE-EeCCCcEEEEecCC
Q 001258 963 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYA-CFLDATVCVFSAAN 1026 (1113)
Q Consensus 963 dg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s-~~~Dg~v~vwd~~~ 1026 (1113)
||+.++++ .++|.+||+++++.+..|. +|.++|.++.|..+ |.++++ ...+.-+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 4689999999999999998 99999999999887 777665 44556688887654
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3e-08 Score=114.37 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=122.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--c
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~ 490 (1113)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34566789999999999999887643 469999999886432 3333445667999999995 333454454 6
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
|.+||+.+++. ..+..+........|++ ||..|+..+ .+| .|.++|+.+++.. .+.........
T Consensus 269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~--------- 335 (430)
T PRK00178 269 IYVMDLASRQL-SRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNAR--------- 335 (430)
T ss_pred EEEEECCCCCe-EEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccc---------
Confidence 88889888764 34555555555566654 455555444 344 4666676554322 11111111122
Q ss_pred EEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-C--c
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 641 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 641 (1113)
..|+|++++++..+. ++ .|.+||+.+++.. .+... . ......|+|||+.++..+.+ + .
T Consensus 336 ------------~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 336 ------------PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred ------------eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 345555556665543 22 5888999887653 33221 1 22356899999999877654 2 3
Q ss_pred EEEEEcC
Q 001258 642 IKILATS 648 (1113)
Q Consensus 642 i~iwd~~ 648 (1113)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5566654
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=3.9e-08 Score=111.32 Aligned_cols=305 Identities=12% Similarity=0.077 Sum_probs=179.1
Q ss_pred EEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEE
Q 001258 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1113)
Q Consensus 481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 560 (1113)
.++.++.++.|..+|..+|+.+..+.-......... -++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 477888889999999999998876653332111222 2335788888999999999988877765443321110000
Q ss_pred EccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCC---cCeEEECCCCCEEEEEE
Q 001258 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST 637 (1113)
Q Consensus 561 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 637 (1113)
. .+..++.++.++.|+.||.++|+.+..+........ ..+... .+..++.+.
T Consensus 143 v-----------------------~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 143 V-----------------------ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred E-----------------------ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 0 123477788899999999999998877754321100 011111 134677888
Q ss_pred CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcce
Q 001258 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1113)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1113)
.++.+..+|..+|......-..... +
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~----------------g-------------------------------------- 223 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPK----------------G-------------------------------------- 223 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCC----------------C--------------------------------------
Confidence 8899999998888432211000000 0
Q ss_pred eeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1113)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1113)
.. ..-++.+. ...+ .+ .+..+++++.+|.++.||..+++
T Consensus 224 ---~~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 224 ---RT-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ---CC-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 00 00000000 0000 11 13456677778888887765332
Q ss_pred eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEE
Q 001258 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII 875 (1113)
Q Consensus 798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~l 875 (1113)
.+|....+ .....+ .++..+++++ +|.|..+|..+++.+....... ....+... .+..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence 13433210 011122 2345566555 8999999999998776553211 12222223 24578
Q ss_pred EEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001258 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929 (1113)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iw 929 (1113)
++++.+|.|+++|..+++.+.++..+...+..--...+ ..|+.++.||.|+.+
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 88999999999999999999888876654433222223 458888999988765
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=7e-09 Score=111.90 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=117.9
Q ss_pred CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCe
Q 001258 762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 840 (1113)
Q Consensus 762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~ 840 (1113)
+-..++-|...|.|.+|+... |.+... +....|.+.|.++.++.+-..|.+++ |+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence 334466666778888877643 222221 33345999999999999989999888 899
Q ss_pred EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC-----CC
Q 001258 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 915 (1113)
Q Consensus 841 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~ 915 (1113)
+..|+...+..++........+.+++++| |+..|++|+ ++|.+||+++++.+..|.||.++|.+++|.-+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999999999999999999 799999886 67999999999999999999999999999876 55
Q ss_pred EEE-EEeCCCcEEEEeCCC
Q 001258 916 VLV-SSGADSQLCVWSSDG 933 (1113)
Q Consensus 916 ~L~-s~s~D~~v~iwd~~~ 933 (1113)
++. ++..+.-+.+|-+..
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 554 455666788887765
No 274
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=5.4e-08 Score=111.45 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=117.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 490 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~-- 490 (1113)
+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34456688999999999999987543 358899998876432 2222334457899999996 3344556664
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
|.+||+.+++. ..+..+.......+|++ ||..|+..+ .++. |.++|+.+++.. .+..........+|+||
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpD--- 360 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPD--- 360 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCC---
Confidence 77788877764 44554555556677765 455565444 3444 555566543322 22112222223344444
Q ss_pred EEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-c--
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-G-- 641 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~-- 641 (1113)
|++++..+. ++ .|.++|+.+++.. .+.... ......|+|||+.|+..+.++ .
T Consensus 361 ------------------G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 361 ------------------GRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred ------------------CCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 445555443 33 4666788777643 332221 123568999999888766543 3
Q ss_pred EEEEEcC
Q 001258 642 IKILATS 648 (1113)
Q Consensus 642 i~iwd~~ 648 (1113)
+.+++..
T Consensus 419 l~~~~~~ 425 (448)
T PRK04792 419 LAAVSID 425 (448)
T ss_pred EEEEECC
Confidence 5666653
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.7e-08 Score=110.90 Aligned_cols=202 Identities=15% Similarity=0.097 Sum_probs=116.4
Q ss_pred CCCcceEEEEEcCCCCeEE---EEeCC--CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC----C
Q 001258 418 DPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----D 488 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d 488 (1113)
.....+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+++ +++... |
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCcc
Confidence 3445667889999998633 34334 357778888876443 33344556678999999963 333322 3
Q ss_pred CcEEEEeCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcC--CC-CCeeeeeCCCCceEEEEE
Q 001258 489 KTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD--NL-GSRVDYEAPGRWCTTMAY 561 (1113)
Q Consensus 489 ~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~~-~~~~~~~~~~~~v~~~~~ 561 (1113)
..+.+|++..+ .......++.+.....+|+ +||..|+..+ .+|...+|.+. .. .....+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 33455777653 3222332222334455665 5556666554 46765566442 21 112222222233344455
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEec---CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 638 (1113)
+||| ++|+..+. ...|.+||+.+++....... ...+....|+|||+.|+....
T Consensus 335 SPDG---------------------~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 335 SPDG---------------------KKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CCCC---------------------CEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEEC
Confidence 5555 45555433 24699999988876543322 124577999999998876543
Q ss_pred ---CCcEEEEEcCCC
Q 001258 639 ---DNGIKILATSDG 650 (1113)
Q Consensus 639 ---dg~i~iwd~~~~ 650 (1113)
...|.++++.++
T Consensus 391 ~~g~~~L~~vdl~~g 405 (428)
T PRK01029 391 NSNESELYLISLITK 405 (428)
T ss_pred CCCCceEEEEECCCC
Confidence 345888888766
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=1.6e-08 Score=99.18 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=134.8
Q ss_pred ccEEEEecCCCEEEEEe-CCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc-cceeee
Q 001258 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 896 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~ 896 (1113)
..++.|++.+..++++. +|.+.+-+...... .+..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888888876 78888555544333 347889999999999998788999999999999999998 455553
Q ss_pred e-ecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC--cEEEEEcC
Q 001258 897 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVVHE 972 (1113)
Q Consensus 897 ~-l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg--~~l~~~~d 972 (1113)
. -+-|...|.++.-+| .+.++++|+.|-.|++||.++-.+. ..... -.+.|..+..+|.- +.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------l~~~~--v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------LFKAK--VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc------cccCc--cccceEEEEecchhhhHHHHHHHh
Confidence 3 566888999998885 5789999999999999999863221 11111 11578999999853 34444544
Q ss_pred CeEEEEeCCcccee---eccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEE-EEecCCC
Q 001258 973 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL 1027 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~-vwd~~~~ 1027 (1113)
+..+|.+...+..- .......|.+-...-.|.....+|++++ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55555555443221 1111224555555555644445677754 566644 7765554
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=1.8e-08 Score=98.80 Aligned_cols=192 Identities=19% Similarity=0.126 Sum_probs=134.3
Q ss_pred CCCCcEEEEEc---CCCCeEEEEEecCCcEEEEecCCcceeEe-eeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~s---pdg~~ll~~gs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
.++.+..+.|+ .+|...++-+-..|.|.++.....+.... +.+. . ..-....-.++.|++.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls------------~--~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS------------S--KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc------------h--hhhhheeeeEEEeeccC
Confidence 34556666665 34554566667788888887654332221 1110 0 00001134678999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeE-eeccCc
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA 510 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~h~~ 510 (1113)
..++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999999865554433 3344478899999999999987776 89999999999999999 4444443 456889
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 565 (1113)
.|.++.-++ +.+.+|++|+.|-.|++||.++..+...-...++.|..+..+|.-
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 999987554 355799999999999999999876665544555677777776643
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.1e-07 Score=118.85 Aligned_cols=256 Identities=9% Similarity=0.071 Sum_probs=160.1
Q ss_pred ccEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecC--------------CCCCeeEEEEecCCCcEEEEEe-cCCc
Q 001258 821 VPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIGM-DDSS 883 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d~~~la~g~-~dg~ 883 (1113)
...+++++++..++++ . ++.|++||... ..+..+.+ .-.....+++++ +++.|.++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 3568898765544444 4 68899999864 44433322 112357899998 566555544 5578
Q ss_pred EEEEEcccceeeeeecc--c---------------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccc---cc
Q 001258 884 IQIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 942 (1113)
Q Consensus 884 v~iwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~---~~ 942 (1113)
|+++|..++. +.++.+ . -...+.++|+| ++..+++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987754 333321 0 12346899999 5667777778899999998775431100 00
Q ss_pred ccCCCCC---CCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeecc-----------ccCC--------CCCCe
Q 001258 943 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPRE--------SSAPI 998 (1113)
Q Consensus 943 ~~~~~~~---~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~-----------~~~~--------h~~~v 998 (1113)
....+.. ........++++|+|.+|++ ..++.|++||+.++...... .... .-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0000100 01124578999999986665 46789999999876532110 0000 11235
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCc-ccCCCcc--c-CccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258 999 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGVS--S-NVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus 999 ~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~-~~~~gh~--~-~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
..++++++|.++++-..+++|++||..++.......... ....|.. + --.+..+++.+ +|+++++-+.+++|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 689999999988888889999999998877654332110 0000100 0 01234577777 78889998899999999
Q ss_pred eccCCC
Q 001258 1075 EPLESE 1080 (1113)
Q Consensus 1075 ~~~~~~ 1080 (1113)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 999876
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=129.26 Aligned_cols=196 Identities=19% Similarity=0.337 Sum_probs=155.4
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+-..|.++.=+|.-.+ .+||+.||.|++|.+..+..+.. |+ ..|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 4578899999999996 88999999999999998887753 22 2233 7899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec---CCCcEEEEeCCC-C--ceeeEeeccCc
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-G--AKQYIFEGHEA 510 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~-~--~~~~~~~~h~~ 510 (1113)
.+..||.+.+|.+.. +++...+.|.....+..|.. . .+++++ .++.+.+||..- + .++. ..|.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence 999999999999882 24446788999999999986 3 466654 578999999652 2 2333 78999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.++++++.|.. ++|++||.+|.|++||++..+.+..+.. + + ...+++
T Consensus 2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~---------------------~-~~~~f~ 2384 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------L---------------------D-TREYFV 2384 (2439)
T ss_pred CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------h---------------------h-hhheee
Confidence 99999977655 7999999999999999997666555443 1 1 123689
Q ss_pred EEecCCcEEEEECCCCceEEEEcc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1113)
+|+..|.++||++.....+..+..
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ccCcccceEEEEccccchhhcCch
Confidence 999999999999998877776653
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.3e-09 Score=112.92 Aligned_cols=291 Identities=14% Similarity=0.127 Sum_probs=186.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC-cee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 490 (1113)
.+.||+..|..++--.+.+.+++++.|++|++|.++.. ..+ ....++..|+.+|.++.|..+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888899999999999999998742 222 24457889999999999999988 56655 899
Q ss_pred EEEEeCCCCceeeEee-----ccCcCEEEEeeeecCCceEEEEE-ecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccC
Q 001258 491 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 564 (1113)
|.+||.--|+++.... +..+.|.++ ++-+...++.| +...+|+++|.+..+-...+..... --|
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------~~P- 875 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------PGP- 875 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC------CCC-
Confidence 9999988888775332 223445544 33344455555 6789999999987655443321110 011
Q ss_pred CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEE
Q 001258 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1113)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 644 (1113)
+..+.+++..+.|++++++-.+|.|.+.|.++|+.+..+..-.. ....++ .|..+.++....|.++.+
T Consensus 876 ---------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 876 ---------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred ---------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence 12455677777778999999999999999999998876643211 112222 356677888888899988
Q ss_pred -EEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258 645 -LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1113)
Q Consensus 645 -wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1113)
|...++ ......+....+.. .+. .-+..+++....
T Consensus 944 nWhaldg-imh~q~kpppepah----------------------------------flq---------svgpSLV~a~~G 979 (1034)
T KOG4190|consen 944 NWHALDG-IMHLQDKPPPEPAH----------------------------------FLQ---------SVGPSLVTAQNG 979 (1034)
T ss_pred eehhcCC-eeeeccCCCCcchh----------------------------------hhh---------ccCceeEEeccC
Confidence 876666 22222221111111 000 113445666555
Q ss_pred CceeeEeccCC-CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEE
Q 001258 724 DKSKVWKLTEL-SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1113)
Q Consensus 724 ~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 777 (1113)
..+.+|.-... ........ +......+..++++.-|-...++++...|.|.+
T Consensus 980 n~lgVYad~a~~ha~stitK--iR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 980 NILGVYADSAELHAESTITK--IRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cEEEEEecchhhhhhhhhcc--ccccccCCccceeeeccccchhhccCCCCceee
Confidence 66666643211 01111111 111224456777888887777888888887764
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=1.9e-07 Score=116.81 Aligned_cols=260 Identities=9% Similarity=0.051 Sum_probs=162.6
Q ss_pred EEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecC-eecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 755 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAP-QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 755 ~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
..++++++ ++.+++-..++.|++|+..... ...... .......|..-. ..-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-------i~~ig~~g~~G~~dG~~~~------a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-------IVQIGSTGEEGLRDGSFED------ATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-------EEEEccCCCcCCCCCchhc------cccCCCcEEEEeCCCCE
Confidence 46788875 5556666667889988864321 100000 000000111000 12234688999999887
Q ss_pred EEEEe--CCeEEEEECCCCceeeeecCC-----------------CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258 833 VMSAS--GGKISLFNMMTFKTMATFMPP-----------------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 833 l~~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 893 (1113)
|+++. ++.|+++|..++. +.++.+. -.....++|+|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 5789999987654 3333210 11346799999667777777788999999987765
Q ss_pred eeeeecc---------c------ccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcccccc--------cc-ccC--C
Q 001258 894 VKSKLKG---------H------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FL-QIP--T 946 (1113)
Q Consensus 894 ~~~~l~~---------h------~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~--------~~-~~~--~ 946 (1113)
.. .+.+ + -...++|+++|+++.| ++-+.++.|++||+.++...... .. ..- .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 2211 1 1245679999999854 55566799999999875421000 00 000 0
Q ss_pred CC--CCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccC-----------CCCCCeeEEEECCCCCEEEE
Q 001258 947 GR--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-----------ESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 947 ~~--~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~s 1012 (1113)
+. .........++++++|..+++ ..++.|++||..++........+ ++-.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000123468999999987776 57889999999887665332111 12236788999999998888
Q ss_pred EeCCCcEEEEecCCCce
Q 001258 1013 CFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 1013 ~~~Dg~v~vwd~~~~~~ 1029 (1113)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88899999999998865
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=2.4e-07 Score=104.95 Aligned_cols=274 Identities=10% Similarity=0.073 Sum_probs=164.5
Q ss_pred CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeE
Q 001258 763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 841 (1113)
Q Consensus 763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i 841 (1113)
+..+++++.++.+..+|..+++. +|....+.. . ....+. ++..+++++ ++.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~-------------~W~~~~~~~---------~---~~~p~v--~~~~v~v~~~~g~l 117 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR-------------LWRVDLDER---------L---SGGVGA--DGGLVFVGTEKGEV 117 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE-------------eeeecCCCC---------c---ccceEE--cCCEEEEEcCCCEE
Confidence 55688888888888877654322 444332211 0 111222 455666665 8999
Q ss_pred EEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-----EEEEcCCCCE
Q 001258 842 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-----GLAFSHALNV 916 (1113)
Q Consensus 842 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-----~l~~s~d~~~ 916 (1113)
..+|..+++.+....... .+.+.-... + ..++.++.+|.|+.||..+|+.+.++......+. +... .+..
T Consensus 118 ~ald~~tG~~~W~~~~~~-~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~ 192 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSS-EVLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG 192 (377)
T ss_pred EEEECCCCcEeeeeccCc-eeecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE
Confidence 999999999877655332 222211111 3 3566678899999999999988776654322111 1111 1346
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC--CCC-ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCC
Q 001258 917 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSD-TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 993 (1113)
Q Consensus 917 L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~ 993 (1113)
++.++.++.+..+|..+++...........+..... ..+ ....+ .++..++.+.++.+..||..+|+.+......
T Consensus 193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~- 270 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS- 270 (377)
T ss_pred EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-
Confidence 778888899999999887653322111111100000 000 11111 2444444478899999999999876654321
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
....+. .++..+++++.||.|..+|..+++.+.+... .. + ....+..+ .+..|++++.||.|++
T Consensus 271 ---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~---~~-~--~~~ssp~i-----~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 271 ---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE---LK-Y--RQLTAPAV-----VGGYLVVGDFEGYLHW 334 (377)
T ss_pred ---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc---cc-C--CccccCEE-----ECCEEEEEeCCCEEEE
Confidence 112222 3567788888999999999999988765421 11 1 11111112 2568889999999999
Q ss_pred EeccCCCccccCC
Q 001258 1074 FEPLESEGKWGVP 1086 (1113)
Q Consensus 1074 W~~~~~~~~~~~~ 1086 (1113)
||..+|+..|..+
T Consensus 335 ~d~~tG~~~~~~~ 347 (377)
T TIGR03300 335 LSREDGSFVARLK 347 (377)
T ss_pred EECCCCCEEEEEE
Confidence 9999999776654
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.6e-07 Score=104.62 Aligned_cols=112 Identities=12% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCcEEEEEcCCCCeEEEEEec----CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 359 SSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
..-+-..|+|... ++|+++- .|.|.||- ++|+.....+ ..- .+++++|+|..-.
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~---hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPV---HATSLCWHPEEFV 73 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cce---ehhhhccChHHHH
Confidence 3345567899888 5777764 47888874 5565433211 111 3567999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
||.|-.-|.+.+|...+.+.- .....|..+|.-+.||++|. .++|+..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999998875422 24457999999999999999 89999999999999876
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.1e-08 Score=111.90 Aligned_cols=304 Identities=13% Similarity=0.155 Sum_probs=186.4
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS- 433 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 433 (1113)
+.-.+.+.++.++|.|+- +|.++.-|. .|-|+...-...+ | +..-..-.|..+.|||...
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCce-----e------------eeccCcchhcceecccCCCC
Confidence 346788999999999996 777776554 3445443211110 0 0111122467788888432
Q ss_pred --eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCc
Q 001258 434 --LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA 510 (1113)
Q Consensus 434 --~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~ 510 (1113)
++++.+ ...-.+|++.....-.....+.+|...|+.+.|.|.... ++++++.|..+..||+++. .++..+..-..
T Consensus 82 ~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 82 PYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred ceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence 344444 444668998754433344468899999999999999887 8999999999999999975 45556655555
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
.-..+.|+... + -+...+..+.|++||.+.+.... .+..+...+..+.|..-- ...+
T Consensus 160 ~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~~ 217 (1081)
T KOG0309|consen 160 AASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSEI 217 (1081)
T ss_pred cCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhhh
Confidence 66678887754 3 35555667789999998765543 555555555555554321 1237
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC-----------CCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
.+.+.|++|++||.............. ...|..-.+.|- ++.+-.-.-+.....|+..++.+.+..+.
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred cccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence 888999999999986543222111111 113344444442 22222222233445577777778888899
Q ss_pred cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
||.+.+.... +...+ ..+.-.....-.|++-+.|.++++|.+..
T Consensus 297 GH~D~V~eFl------WR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 297 GHDDVVLEFL------WRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcchHHHHHh------hhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 9887654210 00000 00001112345689999999999999874
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.1e-08 Score=103.22 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
.++.+.+++.|+ ++|++..+....+.++...... .+.++. ..+..-...++.+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eecccCcceeeeeeccceEEEEeecC
Confidence 345566777787 6888888888777777654331 111110 01111122344444333232223345
Q ss_pred CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeee
Q 001258 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPH 518 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~ 518 (1113)
+...+.+|....+.+. .+-||-..+++|+|+||++ +++++..|..|+|-....-..+..| -||...|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5566777777665433 3569999999999999999 8999999999999887766666554 5799999999864
Q ss_pred ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC
Q 001258 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 551 (1113)
Q Consensus 519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 551 (1113)
.+ ..|+++|.|++|++||+.+++.+.++..
T Consensus 204 ~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 204 DN---YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cC---ceeeecCCCCcEEEEecccCCcccccch
Confidence 32 5799999999999999999888765544
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=1.8e-08 Score=103.66 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE----EcCCeEEEEeC
Q 001258 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 980 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~----~~d~~v~v~d~ 980 (1113)
+..+..++++++||.+..+....++++..... ...+....... ..-+.+.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34455677788888888777777777665433 11222222111 12344555555444443 34567777877
Q ss_pred CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC
Q 001258 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~ 1060 (1113)
..+.+...+ +|-..++.++|+||+++|+++..|..|+|-.++.-..+..+ +.||..-|..+++. +++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------clGH~eFVS~isl~----~~~ 206 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------CLGHKEFVSTISLT----DNY 206 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh------ccccHhheeeeeec----cCc
Confidence 765554443 89999999999999999999999999999988766555433 34899999987665 567
Q ss_pred EEEEEeCCCcEEEEeccCCC
Q 001258 1061 EFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1061 ~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
.|+++|.|++|++||+.+|+
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeecCCCCcEEEEecccCC
Confidence 89999999999999999998
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=122.66 Aligned_cols=200 Identities=15% Similarity=0.230 Sum_probs=153.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
+..|-..|.++.=+|..-+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4456678999999999999999999999999999998877654442 33 8999999999999 688888899999999
Q ss_pred CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
+. .++....+.|......+.|-. ..+++++. ++.+.+||..-.... ..+...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence 65 667777888988888877654 35666653 678999986532211 112233
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
+.+..+++++.|....+++|+.+|.|++||++..+.++.++. +. ...++++|+..|.++||++... .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 344556667777777899999999999999998888776643 33 5678999999999999998766 4
Q ss_pred ceecc
Q 001258 653 LLRTF 657 (1113)
Q Consensus 653 ~~~~~ 657 (1113)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 55444
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.6e-08 Score=109.17 Aligned_cols=265 Identities=12% Similarity=0.161 Sum_probs=172.5
Q ss_pred eEeccCCC--CcEEEEEcCCC--CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 352 TRTLNQGS--SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 352 ~~~~~h~~--~V~~~~~spdg--~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
.+.+.|-. .|-.+.|||.- .+.+++ .....-.||++....... ..-.+.||+..|+.+.
T Consensus 59 pr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n 121 (1081)
T KOG0309|consen 59 PRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDIN 121 (1081)
T ss_pred ceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCccc----------------eEEEEecCccceeccc
Confidence 34455533 56778888754 333444 444556688886543322 1225889999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEe
Q 001258 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF 505 (1113)
Q Consensus 428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~ 505 (1113)
|.| .-..||+++.|-.|..||+.+... ++..+..-...-..|+|+.... .+...+..+.|++||.+.| .++..+
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~ 197 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSL 197 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEe
Confidence 999 566899999999999999998653 3334444455678999997776 3666677788999999865 567889
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
++|...|..+.|+.... ..+.+.+.||+|++||.+......... ....++..-.+.|-|.-.+. -+..
T Consensus 198 K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~----------mp~~ 266 (1081)
T KOG0309|consen 198 KGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI----------MPMV 266 (1081)
T ss_pred cccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe----------cccc
Confidence 99999999998764433 468899999999999998655444322 22335555556565541110 0111
Q ss_pred CCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECCC----------CCEEEEEECCCcEEEEEcCCC
Q 001258 585 TKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKD----------GCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.++.+..-.-++....|+..+ .+.++.+.+|. ..|...-|-.. .-.|++-+.|..+++|-+.+.
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 111111122233444555544 35778887664 34544444332 236999999999999988653
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=9e-07 Score=99.68 Aligned_cols=177 Identities=11% Similarity=0.026 Sum_probs=105.6
Q ss_pred CCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
+.+..-.|||||+++++..+. ...|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 377899999999864444333 3569999998887643 22234456678899999988
Q ss_pred EEEe-C--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCceeeEeeccCcC
Q 001258 436 GVAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 436 as~~-~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
+... . +..|.++|+.+++.. .+..+........|+|||+.+++++.-.+ ..|.+.|+.+|+..+.... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence 7543 2 356888888887633 23334433455689999997444443222 2688888887776443221 111
Q ss_pred EEEEeeeecCCceEEEEEecC---------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258 512 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 566 (1113)
...|+ ++|..|+..+.. ..|.+.|+.++... .+... .......|+|||+
T Consensus 323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCC
Confidence 12554 455666655543 25667777665432 22222 1222455666665
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=1.3e-06 Score=86.68 Aligned_cols=207 Identities=16% Similarity=0.177 Sum_probs=137.5
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCC--cee---eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258 824 FALSKNDSYVMSASGGKISLFNMMTF--KTM---ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1113)
Q Consensus 824 l~~s~~~~~l~~~sdg~i~vwd~~~~--~~~---~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1113)
++.+.||+.||+..|..|.|=..++. ..+ ...+.....=..++||| |+.+||.+...|+|++||+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 67789999999999988888765431 111 22222334568899999 99999999999999999987533 2232
Q ss_pred cc-------cccCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCcccc---ccccccCCCCCCCCCCCceEEEcc
Q 001258 899 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ 962 (1113)
Q Consensus 899 ~~-------h~~~V~~l~~s~d~------~~L~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~sp 962 (1113)
.. -...|.+|.|.+-. ..|+....+|.++=|-+..+.... ....... .+.+ ..|..+.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~-~~yp--~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS-SHYP--HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-ccCC--CceeEEEEcC
Confidence 21 23567777776421 246667778888877764432211 1111211 2222 4789999999
Q ss_pred CCcEEEEEc----C--------CeEEEEeCCcccee---------------------ecc-----cc-CCCCCCeeEEEE
Q 001258 963 DQIHFLVVH----E--------TQLAIFETTKLECV---------------------KQW-----VP-RESSAPITHATF 1003 (1113)
Q Consensus 963 dg~~l~~~~----d--------~~v~v~d~~~~~~~---------------------~~~-----~~-~~h~~~v~~l~~ 1003 (1113)
..++|+++. + -.+..|.+-++... +.. .. ......|..|.+
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 988888731 1 14666765332110 000 00 112567999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 1004 SCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 1004 s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
||||+.||+...+|.|.+|++++.++...+..
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999999998887763
No 291
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.80 E-value=0.00077 Score=78.28 Aligned_cols=578 Identities=12% Similarity=0.090 Sum_probs=269.5
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEcc-CCceeee---eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 426 VIWSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 426 l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
-....+|...+.|..+|.+...-+. +++.... ....-+...-..|+..-++| ++..||.-|.=.+-.+.+...
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d 339 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPD 339 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCC
Confidence 3455688888888888887766554 4433221 11233555667788888887 588888766655555543222
Q ss_pred e-------eEeeccCcCEEEEeeeecC--CceEEEEEe---cCCcEEEEEcCCCCCee---eeeCCCCceEEEE--EccC
Q 001258 502 Q-------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNLGSRV---DYEAPGRWCTTMA--YSAD 564 (1113)
Q Consensus 502 ~-------~~~~~h~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~--~s~~ 564 (1113)
. .++. .-++|..++..... ....+++++ .||++++..-.-+-... .+++ -..+..+. +.++
T Consensus 340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~ 417 (1096)
T KOG1897|consen 340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDEN 417 (1096)
T ss_pred CCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeecccccc
Confidence 1 2333 34688888765433 334566654 38999988533211111 1222 11222333 1111
Q ss_pred CC-eEEecccc-----------CceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEEEEccCCCCCCcCe
Q 001258 565 GT-RTYQGFRK-----------RSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPASPR 623 (1113)
Q Consensus 565 ~~-~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 623 (1113)
-. .++.+... .......|+.+.+.+++... ...||+++-. .....+... ..++.
T Consensus 418 ~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p---~~~ti 492 (1096)
T KOG1897|consen 418 YDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP---GKITI 492 (1096)
T ss_pred CCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC---CceEE
Confidence 10 12111111 01111223333444444332 2335555533 122222222 22344
Q ss_pred EEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc--ccccccCCCCCCCcccchhhhhhhhccccccccccccccc
Q 001258 624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA--YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI 701 (1113)
Q Consensus 624 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1113)
...+.+...++.++.++.+...++..+. ++....+. ..+.+. +|+|.+
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCL------Disp~~---------------------- 542 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACL------DISPLG---------------------- 542 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEE------ecccCC----------------------
Confidence 4445555567777776777666666552 11111111 111111 222222
Q ss_pred CCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258 702 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1113)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1113)
+.. .....+++|-.+..+.+.-............+ ....-...|--..+-.|..+|+++..||.+.-|-+.
T Consensus 543 -----d~~--~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l--~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 543 -----DAP--NKSRLLAVGLWSDISMILTFLPDLILITHEQL--SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred -----CCC--CcceEEEEEeecceEEEEEECCCcceeeeecc--CCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 000 01224455544444333222111100000001 111133455666666778899999999998877554
Q ss_pred ccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC-CCEEEEEeCCeEEEEECCCCceeee-ecCCC
Q 001258 782 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMPPP 859 (1113)
Q Consensus 782 ~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~ 859 (1113)
. .+|.......... ...++.--.|+.. +..+.+.+|.-.-+|.-.. +.+.+ +. -
T Consensus 614 ~--------------------~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls--~ 669 (1096)
T KOG1897|consen 614 I--------------------NTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLS--L 669 (1096)
T ss_pred c--------------------ccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccc--h
Confidence 2 2222111100000 1223333344433 3344455555444444322 22111 11 0
Q ss_pred CCe-eEEEEecC-CCcEEEEEecCCcEEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCC------------
Q 001258 860 PAA-TFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------------ 923 (1113)
Q Consensus 860 ~~i-~~l~~s~~-d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------------ 923 (1113)
..+ ..+.|+.+ .+..|+++. .+.+.+.-+..-+ .++++.-| .....+++.+....+.+.+..
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcc
Confidence 001 11122211 123444443 3456665554311 12232222 234556665533333333221
Q ss_pred --CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-CcEEEEEc-----------CCeEEEEeCCccceeecc
Q 001258 924 --SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVVH-----------ETQLAIFETTKLECVKQW 989 (1113)
Q Consensus 924 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~~~-----------d~~v~v~d~~~~~~~~~~ 989 (1113)
..++++|-++.+....... ........+.++.|..| +.++++|. .|.|.+|....+..+...
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef----~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEF----ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred eEEEEEEecCCceeEEeeccc----cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence 1366777666433221111 11111234556668888 77777742 367888887764433332
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258 990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus 990 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
....-.+.+.++.. -+|++||. -...|++|++.+.+.++.-. .|...+..+.+. ..|+.+++|..-+
T Consensus 824 ~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~-------~~~~~~~aL~l~---v~gdeI~VgDlm~ 890 (1096)
T KOG1897|consen 824 AETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC-------NISNPIIALDLQ---VKGDEIAVGDLMR 890 (1096)
T ss_pred eeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh-------cccCCeEEEEEE---ecCcEEEEeeccc
Confidence 21111445555543 26777754 46789999999886654332 555666654444 3688999999999
Q ss_pred cEEEEeccCCCc-cccCCCCCCCCCCC
Q 001258 1070 GVHVFEPLESEG-KWGVPPPVDNGSTS 1095 (1113)
Q Consensus 1070 ~v~vW~~~~~~~-~~~~~~~~~~~~~~ 1095 (1113)
++.+-.....|+ -....+.|...+++
T Consensus 891 Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 891 SITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred eEEEEEEeccCCceEEeehhhCcccee
Confidence 988888777663 33444555555443
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.6e-06 Score=97.78 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=123.4
Q ss_pred CccEEEEecCCCE-EEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE-EEecC--CcEEEEEccc
Q 001258 820 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDD--SSIQIYNVRV 891 (1113)
Q Consensus 820 ~v~~l~~s~~~~~-l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-~g~~d--g~v~iwd~~~ 891 (1113)
......|+|||+. ++..+ + ..|.++|+.+++...... ..+......|+| ||+.|+ +.+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 5668899999985 66544 3 459999998876654433 445566788999 676555 44434 4688888877
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
++. ..+..+........|+|||+.|+..+.. + .|.+.|+.+++.... . ..+. ....|||||++++
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t--~~g~-------~~~~~SPDG~~Ia 334 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--V--FHGK-------NNSSVSTYKNYIV 334 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--c--cCCC-------cCceECCCCCEEE
Confidence 763 4454444434556899999988876643 3 578888887654221 1 1111 1248999999998
Q ss_pred EE-cC---------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-C--cEEEEecCCC
Q 001258 969 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANL 1027 (1113)
Q Consensus 969 ~~-~d---------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g--~v~vwd~~~~ 1027 (1113)
.. .. ..|.+.|+.++....... . .......|+|||++|+....+ + .+.+.+++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 73 22 368888998887543322 1 233468999999988766543 2 3666666543
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.80 E-value=1.3e-06 Score=84.86 Aligned_cols=234 Identities=11% Similarity=0.021 Sum_probs=155.8
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1113)
Q Consensus 629 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1113)
...+|+.|+..|.+.+|...+.....+....+...+... .
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~----------------------------------------~ 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV----------------------------------------K 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhh----------------------------------------h
Confidence 456899999999999999987744444443333322110 0
Q ss_pred cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1113)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1113)
........+..++.|.++++.++........... ..-.+.++.+++|++++++.+....|..|.++......
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~- 194 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI- 194 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeec-------cccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-
Confidence 1111233456777888888888875433322221 11237889999999999999999999999886432211
Q ss_pred CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceee-----eecCCCCCe
Q 001258 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPPAA 862 (1113)
Q Consensus 789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~-----~~~~~~~~i 862 (1113)
+..... .....-.+..|+.+...+|++. ||++.|||++...... +-..|.+.+
T Consensus 195 -------------------~~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~ 253 (344)
T KOG4532|consen 195 -------------------ENIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF 253 (344)
T ss_pred -------------------eeeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence 110011 1344456788999999999998 9999999998654332 224578899
Q ss_pred eEEEEecCCC--cEEEEEecCCcEEEEEcccceeeeeec-------cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 863 TFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHSK-RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 863 ~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~~~~~l~-------~h~~-~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
..+.|++ .| .+|+..-.-+.+.+.|+++++..+.+. .|.. .|..-.|+.++..+.+.+++. +.-|++.
T Consensus 254 R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 254 RVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred EEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence 9999998 44 466666667799999999876554432 2333 388888988887777776654 6667776
Q ss_pred C
Q 001258 933 G 933 (1113)
Q Consensus 933 ~ 933 (1113)
+
T Consensus 332 s 332 (344)
T KOG4532|consen 332 S 332 (344)
T ss_pred c
Confidence 5
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=8.8e-06 Score=92.47 Aligned_cols=310 Identities=10% Similarity=0.051 Sum_probs=170.4
Q ss_pred EEEEecCCCcEEEEeCCCCceeeEeeccC--cCEE-----EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC
Q 001258 481 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1113)
Q Consensus 481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 553 (1113)
.++.++.++.+.-+|..+|+.+-...-.. .... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 36667778889999998998876553221 0000 0000011122467788889999999999988887665443
Q ss_pred CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCC
Q 001258 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGC 631 (1113)
Q Consensus 554 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~ 631 (1113)
....+..+ .+..++.+..++.|+.+|..+|+.+............. ..-+| .+.
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~sP~v~~~ 206 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR-GESAPATAFG 206 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc-CCCCCEEECC
Confidence 21111111 02247778889999999999999988876431100000 00122 234
Q ss_pred EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcccc
Q 001258 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 711 (1113)
Q Consensus 632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1113)
.++.++.+|.+..+|..+|......-..... +
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~----------------~-------------------------------- 238 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT----------------G-------------------------------- 238 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCC----------------C--------------------------------
Confidence 5677788899998998888432211000000 0
Q ss_pred CCCcceeeccCCCce-eeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCc
Q 001258 712 ADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1113)
Q Consensus 712 ~~~~~l~~~~~d~~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1113)
. ..+ +++++ ...++ + .+..+++++.+|.+..+|..+++
T Consensus 239 ---------~--~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------ 277 (394)
T PRK11138 239 ---------A--TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------ 277 (394)
T ss_pred ---------c--cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence 0 000 00000 00011 0 12345556666776666654321
Q ss_pred eeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEe
Q 001258 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH 868 (1113)
Q Consensus 791 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s 868 (1113)
.+|....+. ...+.. ++..++.++ +|.+..+|..+++.+....... ....+..+.
T Consensus 278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 134322110 111222 344455554 8999999999887765433211 112223332
Q ss_pred cCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 869 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 869 ~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
+ ..|++++.||.|++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 46777899999999999999988776543333332 222 2457888899999888764
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=1.2e-05 Score=91.29 Aligned_cols=211 Identities=11% Similarity=0.034 Sum_probs=121.8
Q ss_pred CCeEEEEECCCCceeeeecCCCCC-----eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc-------Ce
Q 001258 838 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI 905 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~V 905 (1113)
++.|.-+|..+++.+..+...... ..+-... ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 566777777777666555422111 0111122 22 466677889999999998877654421100 01
Q ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258 906 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1113)
Q Consensus 906 ~~l~~s~--d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~ 983 (1113)
..+.-+| .+..++.++.++.+..+|..+++..-... .+ ....+.. .++..++.+.++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 24567777889999999999876532211 11 1111221 2344444468899999999999
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
+.+-...... .....+..+ .+.+|+.++.||.|.+.|..+|+.+.+...... + -...++ +. +..|+
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~---~--~~s~P~-~~-----~~~l~ 380 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS---G--FLSEPV-VA-----DDKLL 380 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---c--ceeCCE-EE-----CCEEE
Confidence 8755432111 111222222 255778889999999999999999887652110 1 111221 11 34888
Q ss_pred EEeCCCcEEEEec
Q 001258 1064 LGLSDGGVHVFEP 1076 (1113)
Q Consensus 1064 s~~~Dg~v~vW~~ 1076 (1113)
.++.||.|+.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999998875
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.4e-06 Score=97.39 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
.+++++|+|..- +|+.|-.-|.+.+|...+.+.-. +...|..+|..+.||++|..|.++.
T Consensus 61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ht-------------------v~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHT-------------------VVETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred ehhhhccChHHH-HHhhccccceeEEEecCCceeee-------------------eccCCCCCceeEEecCCCCeEEEcC
Confidence 356799999887 69999999999999987655422 4567999999999999999999999
Q ss_pred CCCeEEEEEccC
Q 001258 440 SRHIVQIYSYHG 451 (1113)
Q Consensus 440 ~d~~i~iwd~~~ 451 (1113)
.-|.|.+|...-
T Consensus 121 ~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 121 NPGSVHLWRYDV 132 (1416)
T ss_pred CCceeEEEEeee
Confidence 999999998763
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.6e-08 Score=104.23 Aligned_cols=221 Identities=14% Similarity=0.220 Sum_probs=160.0
Q ss_pred eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCC
Q 001258 852 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1113)
Q Consensus 852 ~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~ 924 (1113)
+..+.+|...|..++--. +.+-+++++.|.+|++|.++. ..+..+...|..+|.++.|-.|.++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345778888888887665 667788999999999999874 23556778899999999999998888865 88
Q ss_pred cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEE--EcCCeEEEEeCCccceeeccccC---CCCCC
Q 001258 925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLV--VHETQLAIFETTKLECVKQWVPR---ESSAP 997 (1113)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~---~h~~~ 997 (1113)
.|.+||.--++.... +...... +.+..+..-+ +...+++ +.+.+|+++|.+.++.+..|..- +-+.-
T Consensus 805 giHlWDPFigr~Laq----~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQ----MEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhHh----hhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 899999766543221 2211111 2334444434 3444444 36789999999999888777642 33567
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE-Eec
Q 001258 998 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV-FEP 1076 (1113)
Q Consensus 998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v-W~~ 1076 (1113)
+.+++..+.|..++++-.+|+|.+.|..+|+.+..+++-+. .... ++ .|.| +.|+....|.++.| |-.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec-------dllq--la-apsd-q~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC-------DLLQ--LA-APSD-QALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc-------hhhh--hc-Cchh-HHHHhhcccceeEeeehh
Confidence 89999999999999999999999999999999877663221 1111 22 2433 57888888999999 988
Q ss_pred cCCCccccCCCCCCCC
Q 001258 1077 LESEGKWGVPPPVDNG 1092 (1113)
Q Consensus 1077 ~~~~~~~~~~~~~~~~ 1092 (1113)
.+|-+.+...+|.+..
T Consensus 948 ldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCCeeeeccCCCCcch
Confidence 8888777776665443
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=1.2e-05 Score=80.18 Aligned_cols=228 Identities=12% Similarity=0.183 Sum_probs=130.5
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1113)
|.++.++||+ +||. -.|..|.|=.....-.-..... .+.+.....=+.++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence 3577889999 4555 4577777766554321111111 1233344456789999999999999999
Q ss_pred CeEEEEEccCCceeee--eeeee-cccCCeeEEEEcCCC-----CeeEEEEecCCCcEEEEeCCC-----CceeeEee--
Q 001258 442 HIVQIYSYHGGDEVRQ--HLEID-AHVGGVNDIAFSHPN-----KQLCVITCGDDKTIKVWDATN-----GAKQYIFE-- 506 (1113)
Q Consensus 442 ~~i~iwd~~~~~~~~~--~~~l~-~h~~~V~~v~~s~~~-----~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~-- 506 (1113)
|+|+++|+.+...... ...+. .-...|..+.|.+.. .. -|+.-..+|.++=+-+.. .+..+++.
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 9999999987543311 00011 123467777776543 11 244555677777666532 23334443
Q ss_pred -ccCcCEEEEeeeecCCceEEEEEec-CCc----------EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 507 -GHEAPVYSVCPHHKENIQFIFSTAL-DGK----------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 507 -~h~~~v~~~~~~~~~~~~~l~s~~~-dg~----------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
.+...|.++++++.. ++|+.||. ... +..|.+-++.+-..
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-------------------------- 195 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-------------------------- 195 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE--------------------------
Confidence 246789999988765 45555543 221 22332222111110
Q ss_pred CceeEEEecCCCCEEEEEecCC------cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDF------SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
.+....|+ +..+|.+-+.+..... ......|..+..||||..||+...+|.|.+|++.
T Consensus 196 --------------~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 196 --------------QVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred --------------EccccCccccccccccceeeccceeeeecc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 11111111 1223333322222111 1224578999999999999999999999999997
Q ss_pred CC
Q 001258 649 DG 650 (1113)
Q Consensus 649 ~~ 650 (1113)
+-
T Consensus 260 sL 261 (282)
T PF15492_consen 260 SL 261 (282)
T ss_pred cc
Confidence 76
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=8.8e-06 Score=83.86 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=127.0
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEe----------------
Q 001258 823 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 879 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---------------- 879 (1113)
.-+||+||++|++.- .|.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 368999999999884 3779999998 6777888888777778889999 786666652
Q ss_pred --cCCcEEEEEcccceeeee--e--cccccCeEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCccccccccccCC
Q 001258 880 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT 946 (1113)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~L~s~s~D~~-------v~iwd~~~~~~~~~~~~~~~~ 946 (1113)
.+-.+...|..+|+++.+ + .-|...|..|++.++|..++..-..+. |-+++-.. .. .......
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--AL--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cc--eeccCCh
Confidence 122455667788888876 4 348889999999999877665533331 33443322 11 1111111
Q ss_pred CC-CCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 947 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 947 ~~-~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
.. ....+.+-+++++++|.+++++ .-+.+.+||..++..+.... -..+..++-.+++ ++++.+
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC
Confidence 00 0111467899999999998874 56789999999999988765 4567778877777 666554
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=5.4e-06 Score=87.28 Aligned_cols=224 Identities=14% Similarity=0.121 Sum_probs=138.5
Q ss_pred CCeEEEEECCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC
Q 001258 838 GGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1113)
+|+|..||..+++.+....... ....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5889999999999887775321 22222233 2 345677778999999999999998877664 22221111 22455
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCC
Q 001258 916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES 994 (1113)
Q Consensus 916 ~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h 994 (1113)
.++.++.|+.|+.+|..+++............. ..........++..+++ ..++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777888999999999876433111111110 01122233333666666 4699999999999999877654221
Q ss_pred C--C------CeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 995 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 995 ~--~------~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
. . .+..-.+..++ .++.++.++. +.+ |+.+++.+.... . + .+. ..... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~-~---~~~---~~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----I-S---GIY---SLPSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----S-S----EC---ECEEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----C-C---Ccc---CCcee-eCCEEEEE
Confidence 1 1 11222233345 7777777885 555 999998663221 0 1 111 11223 46788877
Q ss_pred eCCCcEEEEeccCCCcccc
Q 001258 1066 LSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus 1066 ~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
+.|+.|..||+++|+..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998774
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=6.2e-06 Score=80.24 Aligned_cols=220 Identities=12% Similarity=0.035 Sum_probs=135.9
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccC
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG 451 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~ 451 (1113)
+||.|+..|...+|...+.+.... ....|...|+-+.=.- ...-+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 489999999999999987654331 1122222222111111 223466788999999999886
Q ss_pred CceeeeeeeeecccC--CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-cee-e-EeeccCcCEEEEeeeecCCceEE
Q 001258 452 GDEVRQHLEIDAHVG--GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ-Y-IFEGHEAPVYSVCPHHKENIQFI 526 (1113)
Q Consensus 452 ~~~~~~~~~l~~h~~--~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~-~-~~~~h~~~v~~~~~~~~~~~~~l 526 (1113)
+.... .-|.. .+.+++.++|++ ++++.++...|..|.+... +.+ + ......+.-.+..|+ .+...+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s--~~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS--ENDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec--cCcceE
Confidence 54322 22433 388999999999 7889998899999988753 322 2 122223333444554 444789
Q ss_pred EEEecCCcEEEEEcCCCCCeee-----eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEE
Q 001258 527 FSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601 (1113)
Q Consensus 527 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 601 (1113)
+++..||++.+||++....... .+.|.+.+..+.|++-|.. ..|+..-.-+.+.+.
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-------------------DLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-------------------DLLFISEHFSRVHVV 279 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-------------------eEEEEecCcceEEEE
Confidence 9999999999999997654432 2334555666666554431 134444456788999
Q ss_pred ECCCCceEEEEccCCC------CCCcCeEEECCCCCEEEEEEC
Q 001258 602 DMDSVQLLTSIDADGG------LPASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 602 d~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 638 (1113)
|+++++..+.+..... ...+..-.|+.++.-+.+.+.
T Consensus 280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 9999876655532211 123555666665555544443
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=2.7e-05 Score=80.36 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=148.1
Q ss_pred CcEEEEEcCCCCeEEEEEecCC-cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+.-.++.+|+....++.+-.-| ...+||..+++...... .-....|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4456788896666677777665 47799999998776411 1122246677 5899999999987
Q ss_pred e-----CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC----------------CCcEEEEeCC
Q 001258 439 Y-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDAT 497 (1113)
Q Consensus 439 ~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----------------d~~i~iwd~~ 497 (1113)
= ..|.|-|||...+ ++.+.++..|.-.-..+.+.|||+.++++-|+- +-++.+-|..
T Consensus 69 End~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 3588999999932 344447777777788899999998655554432 3456677778
Q ss_pred CCceeeE--e--eccCcCEEEEeeeecCCceEEEEEecCCc-------EEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258 498 NGAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGK-------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1113)
Q Consensus 498 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 566 (1113)
+|+.+.. + .-|...|.-+++.. +|..++..-..|. |-+++.. +....+ ...++.
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~----------~~p~~~- 211 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLL----------PAPEEQ- 211 (305)
T ss_pred CCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--Ccceec----------cCChHH-
Confidence 8887765 4 33777888888654 3333333222221 2222111 111111 110000
Q ss_pred eEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258 567 RTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1113)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 643 (1113)
...-.+.+..++++.++.++++. -..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+.
T Consensus 212 ---~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 212 ---WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred ---HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEE
Confidence 00112345566666666666554 47889999999999998877643 45666766666 555444 35543
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.3e-06 Score=89.21 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=143.4
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeC
Q 001258 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 496 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~ 496 (1113)
.|.+.|+.+..+ -.+++.+++.||.++.|.-..-.-+.-...+..|.+.|.+++.+-++. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 477888887665 567999999999999998665333444446778999999999999998 7889777 999999999
Q ss_pred CCCceeeEeec--cCcCEEEEeeeecCC-c--eEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEE
Q 001258 497 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 497 ~~~~~~~~~~~--h~~~v~~~~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
++-..+..++- -.+.+ +|...+. - .+-++.-.+|.+.++|-....+.. .-..|..+|..+.+.+
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q------ 154 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ------ 154 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec------
Confidence 87655433321 12222 2222221 1 122333457889999876544332 2233444555554444
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECCC------CceEEEEc-------cCCCCCCcCeEEECCCCCEEEEE
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
.+..+++....|.|.-|.... .+....++ .........++.|+|++..+.+-
T Consensus 155 ---------------a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 155 ---------------AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ---------------cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 444678888899999998863 11111111 11223456899999999999999
Q ss_pred ECCCcEEEEEcCCCccceeccc
Q 001258 637 TNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
..|..|++++..++ ...+.++
T Consensus 220 ~~DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred CcccEEEEEEeccc-hhhhhhh
Confidence 99999999999998 5665554
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.2e-07 Score=93.35 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=124.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
++||-+-.-.-++.+.+-.|-+-|+++|-... +. ..+.|.++.|...+.++..|..+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCc
Confidence 36664322112334456778899999886542 22 4568999999998999999999999
Q ss_pred EEEEEccCCce--eeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCce---eeEeeccCcCEEEEee
Q 001258 444 VQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCP 517 (1113)
Q Consensus 444 i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~ 517 (1113)
|.+.|++.+.. ..+. ..--|...|+++.... +++ +|++.+.+|+|++||++.-++ +..+.||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986511 1111 1225899999998877 455 799999999999999987666 8899999877666666
Q ss_pred eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC
Q 001258 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1113)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 553 (1113)
+..+....+++++.|...+||.++.+....+++.+.
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 666666789999999999999999887777665543
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=1.1e-06 Score=86.86 Aligned_cols=307 Identities=13% Similarity=0.126 Sum_probs=167.1
Q ss_pred ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-----eeeEeeccCc------------CEEEEeeeecCCceEE
Q 001258 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFI 526 (1113)
Q Consensus 464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l 526 (1113)
..+.|++|.|...|. ++++|...|.|.++.-.... ....|++|.. .|..+.|........+
T Consensus 25 ead~ItaVefd~tg~--YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETGL--YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEeccccc--eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 345799999999998 89999999999999754322 1224566643 4667777655555677
Q ss_pred EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC
Q 001258 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606 (1113)
Q Consensus 527 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 606 (1113)
+..+.|++|++|.+......... ...--.++.+...|. +.... .+..-..+. .|..|...-
T Consensus 103 LlstNdktiKlWKiyeknlk~va--~nnls~~~~~~~~g~-~~s~~---~l~lprls~---------hd~iiaa~p---- 163 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVA--ENNLSDSFHSPMGGP-LTSTK---ELLLPRLSE---------HDEIIAAKP---- 163 (460)
T ss_pred EEecCCceeeeeeeecccchhhh--ccccccccccccCCC-cCCHH---Hhhcccccc---------cceEEEecc----
Confidence 77889999999988754322211 111111111111111 00000 000000000 011111100
Q ss_pred ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhh
Q 001258 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 686 (1113)
Q Consensus 607 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1113)
..+....|...+++++|+.|...++++. |=.|.+|++.-..
T Consensus 164 ---~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D----------------------------------- 204 (460)
T COG5170 164 ---CRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID----------------------------------- 204 (460)
T ss_pred ---ceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-----------------------------------
Confidence 0111122344688999999988887754 5688899865321
Q ss_pred cccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCce-
Q 001258 687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA- 765 (1113)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~- 765 (1113)
+...+-|+.. ..... -..-|++..|+|....
T Consensus 205 -------------------------------------~sFnIVDiKP----~nmee-------LteVItSaeFhp~~cn~ 236 (460)
T COG5170 205 -------------------------------------GSFNIVDIKP----HNMEE-------LTEVITSAEFHPEMCNV 236 (460)
T ss_pred -------------------------------------CceEEEeccC----ccHHH-------HHHHHhhcccCHhHcce
Confidence 1112222221 00000 1234567777776543
Q ss_pred EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCC-CccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEE
Q 001258 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP-SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF 844 (1113)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~-~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw 844 (1113)
+.-.++.|.|++-|+.....-.... +++... .|.-.. .+.+ -...|..+.|+++|+++++-+--++++|
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~-------klfe~~~D~v~~~-ff~e--ivsSISD~kFs~ngryIlsRdyltvkiw 306 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSK-------KLFELTIDGVDVD-FFEE--IVSSISDFKFSDNGRYILSRDYLTVKIW 306 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCch-------hhhhhccCcccch-hHHH--HhhhhcceEEcCCCcEEEEeccceEEEE
Confidence 4455566899998876432111110 111100 110000 0111 2456888999999999999888999999
Q ss_pred ECCC-CceeeeecCCC------------CCe---eEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258 845 NMMT-FKTMATFMPPP------------PAA---TFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 845 d~~~-~~~~~~~~~~~------------~~i---~~l~~s~~d~~~la~g~~dg~v~iwd~ 889 (1113)
|... ..++.++.-|. ..| ..+.||. |.+.+.+|+.....-||-.
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 9874 45566664442 112 3467787 6677888887777777753
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.0006 Score=66.61 Aligned_cols=147 Identities=9% Similarity=0.016 Sum_probs=95.7
Q ss_pred EEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee
Q 001258 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1113)
Q Consensus 471 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 550 (1113)
+...+|.+. +++.||..+.+.--|..+|+.+..-. -...|.+-+..- + ++++.|...|.+.+-+..++.....+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vv-g--dfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVV-G--DFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEE-C--CEEEEEEccCcEEEEEecchhheeeee
Confidence 334455555 78888888889899999988765322 223444433321 2 579999999999999999987776554
Q ss_pred CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC
Q 001258 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630 (1113)
Q Consensus 551 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 630 (1113)
..+.--.. ...++++..+.+|+.|+..+..|..+..++...+..+. ...+-+..|..
T Consensus 91 ~~~~vk~~---------------------a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETVKVR---------------------AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhhhccc---------------------eEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 33221111 22345556799999999999999999999988776544 23344556633
Q ss_pred CEEEEEECCCcEEEE
Q 001258 631 CLLAVSTNDNGIKIL 645 (1113)
Q Consensus 631 ~~l~~~~~dg~i~iw 645 (1113)
..|..+...|.+.--
T Consensus 148 ~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAV 162 (354)
T ss_pred ceEEEEeccceEEEE
Confidence 344444444554433
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.3e-06 Score=86.26 Aligned_cols=227 Identities=15% Similarity=0.208 Sum_probs=140.6
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeeeeecccC------------CeeEEEEcCCCCeeEEEE
Q 001258 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT 484 (1113)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~------------~V~~v~~s~~~~~~~l~s 484 (1113)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+-+..+++|.. .|..+.|..++....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34579999999999999999999999999765432 1222334556643 478899987766556777
Q ss_pred ecCCCcEEEEeCCCCc-------------------ee-----------------------eEe-eccCcCEEEEeeeecC
Q 001258 485 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE 521 (1113)
Q Consensus 485 ~s~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~ 521 (1113)
.+.|++|++|.+.... ++ +.. ..|.-.|.++.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 7889999999875431 00 001 24555667777643
Q ss_pred CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecCCcEEE
Q 001258 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF 600 (1113)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 600 (1113)
|...+++ +.|-.|.+|+++-......+ +.+-|..- ..-...|....|+|.. +.+.-.+..|.|++
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEE---------EeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 3345554 45778999988754433221 11111110 0000123333444433 23555677899999
Q ss_pred EECCCCceE------EE--EccC------CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258 601 WDMDSVQLL------TS--IDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1113)
Q Consensus 601 wd~~~~~~~------~~--~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1113)
-|++...+. .. +.+. +-...|..+.|+++|+++++-+. -+++|||......+++++.-|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 998743211 11 1100 11245778999999999988765 68999999888777777655443
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.51 E-value=0.00034 Score=73.76 Aligned_cols=223 Identities=20% Similarity=0.219 Sum_probs=139.4
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc-CCCCeEEEEeC
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 440 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 440 (1113)
.+.+|.+....|+++....+.|..|+..+++.... ... ....+++. ++|++++ +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~v-~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLYV-ADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEEE-EET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEEE-EEc
Confidence 36789984444788877889999999988765431 111 26677777 6655544 444
Q ss_pred CCeEEEEEccCCceeeeeeeee--c-ccCCeeEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCceeeEeeccC
Q 001258 441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
++ +.++|..+++.. .+.... . .....+.+++.++|. +.++.... +.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 44 566699888643 333332 2 345789999999999 55655433 457777765 45433333 45
Q ss_pred cCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCee----ee-eCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 510 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRV----DY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~----~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
...+.++|+++ ++.| ++-+..+.|..+++....... .+ ...... +....++++
T Consensus 134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~pDG~~vD 192 (246)
T PF08450_consen 134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------GYPDGLAVD 192 (246)
T ss_dssp SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------CEEEEEEEB
T ss_pred ccccceEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------cCCCcceEc
Confidence 56788898764 4444 566778889999887544311 11 111110 123445666
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEE
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST 637 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~ 637 (1113)
.+|+..++....+.|.+++.+ |+.+..+.... ..+++++| .++.+.|++.+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 666677777789999999987 88888887662 36889999 46766665543
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=0.00013 Score=76.98 Aligned_cols=218 Identities=13% Similarity=0.052 Sum_probs=135.1
Q ss_pred cEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 822 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 822 ~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.+++|.+ ++.++++-. .+.|..|+..+++... +.... ...+++...++.+++ +.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEee
Confidence 3578888 555555543 7899999998876543 22122 778888832665554 444 455666988875443332
Q ss_pred c-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 900 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 900 ~-----h~~~V~~l~~s~d~~~L~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
. .....+.+++.++|++.++.... +.|..++.. ++.. ...... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988876654 446666665 2211 111111 13478999999998
Q ss_pred EEEE--cCCeEEEEeCCccce----eecc-ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCccc
Q 001258 967 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1113)
Q Consensus 967 l~~~--~d~~v~v~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~ 1039 (1113)
|+++ ..+.|..|++..... ...+ ....-.+..-.+++..+|.+.++....+.|.+++.+ |+++..+..+.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-- 224 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-- 224 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--
Confidence 8763 667888888853221 1112 111112347889999999988888889999999987 88888776221
Q ss_pred CCCcccCccceEEEEeCCCCCEEEE
Q 001258 1040 PAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 1040 ~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
..+ ..++|-..+.+.|..
T Consensus 225 -----~~~--t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 225 -----PRP--TNCAFGGPDGKTLYV 242 (246)
T ss_dssp -----SSE--EEEEEESTTSSEEEE
T ss_pred -----CCE--EEEEEECCCCCEEEE
Confidence 123 358885335455443
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-06 Score=91.16 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=151.3
Q ss_pred CCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 001258 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 933 (1113)
Q Consensus 858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~ 933 (1113)
|...|+.+..+. .+++.+++-||.++.|.-.. -+.+..+..|-+.|.+++.+.|+.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 666677776664 57999999999999997543 2445667889999999999999999999887 99999999988
Q ss_pred CccccccccccCCCCCCCCCCCceEEEccCC-c-EEEEE--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE
Q 001258 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ-I-HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1113)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~-~l~~~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1113)
.......-+..+.+ -..+..++.. . .++++ .++.+.++|-....|.......-|..+|.++.+.+-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 55432222222211 1122223321 1 44443 778999999877665555555578999999999999999
Q ss_pred EEEEeCCCcEEEEecCC------CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1010 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1010 l~s~~~Dg~v~vwd~~~------~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+++....|.|.-|..+. .++...+.....+-.-.-..-.+.++.|+| +|..+.+-+.|..|+++++.+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999873 222222222222111112223344688999 78999999999999999999998
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=4.5e-06 Score=80.91 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=72.1
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee-eeeecccccCeEEEEEcC-CCCE
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSH-ALNV 916 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~-d~~~ 916 (1113)
+..+.|+++..+.+..-......|++++-+|.-.+++++|+.||.+-+||.+.... ...+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34555665533322221222234899999997778999999999999999987643 355688999999999997 5688
Q ss_pred EEEEeCCCcEEEEeCCC
Q 001258 917 LVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 917 L~s~s~D~~v~iwd~~~ 933 (1113)
|+++++||.+..||-.+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=1.6e-06 Score=83.87 Aligned_cols=210 Identities=12% Similarity=0.160 Sum_probs=124.1
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1113)
|+.+.|+-+- .|+++..++.+......++.+... |+-..... +...+..|+++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6777777665 488888888887777665544331 11111111 11123345555455555556888999999
Q ss_pred CCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEec-----CCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
||.+.+++.+.-..+. ..+. .|.+ -.+.+....+. ++.+++ .-+..++|+++-.+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1221 12233333444 233322 1234556665533322211122334899
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
+|-+|... +++++|+.||.+-+||.+...-.. .+..|...+..+-|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99888765 688999999999999999764332 3455666666666666432 4589999
Q ss_pred cCCcEEEEECCC
Q 001258 594 DDFSIKFWDMDS 605 (1113)
Q Consensus 594 ~dg~i~iwd~~~ 605 (1113)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999764
No 313
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.46 E-value=6.6e-07 Score=85.09 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=99.4
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHH
Q 001258 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1113)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1113)
...++++|++|+++.|++.+......-. +....+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5789999999999999999998732211 111248999999999999999999999999999997665445677888888
Q ss_pred Hhccccccc--chhhccCCCChhHHHHHHHHHHhhccCCCCcccccCCCCCc-hhHHHHHHHHHHHHH
Q 001258 118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 182 (1113)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1113)
+|....... ...+...-+. ..|++|++.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887776654 3344333233 7789999999887754332 33 467888888876554
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=3.1e-05 Score=81.48 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=136.1
Q ss_pred CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeee
Q 001258 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459 (1113)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~ 459 (1113)
+|+|..||..+|+.+-...+. .+.. ...+. ..+++.++.+++.++.|..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 688999999999887643210 0111 12211 2236777888889999999999999876533
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCc---CEEEEeeeecCCceEEEEEecCCcE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 535 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1113)
.. .+.+.......++. ++.++.++.++.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 22 22222212333343 555557889999999999998874 32211 1111221122 3578888889999
Q ss_pred EEEEcCCCCCeeeeeCCCCce-EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258 536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 536 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1113)
..+|.++++.+.......... ..+.... ....-....++ .++.++.++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988877765533221 0000000 00011111122 57777777764444999998664333
Q ss_pred CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 615 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
.. .+.. ....++..|++++.++.+..||+.+++..
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 11 2222 14567788888889999999999999543
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.44 E-value=8.2e-05 Score=84.09 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=117.7
Q ss_pred EecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----cEEEEEcccceeeeeec
Q 001258 826 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 826 ~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~ 899 (1113)
+++||+.+...+ .+.+.+.|.++.+...++.-. .....+++++ +++++++.+.+. .+..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456887765544 578889999988777665532 2456789999 888888776322 22222221111111111
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEE
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 976 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~ 976 (1113)
- ..+ -++.++|++... .++.|.+.|..+..... .....++.+. ....+.+||||++++++ .+.++.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 0 000 133457877665 36789999988711000 1122233333 45889999999999994 678999
Q ss_pred EEeCCccce------------eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 977 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 977 v~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
|+|+.+.+. +.+... .......+|+++|....+-..|..|..|++.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988663 333322 34556789999999888899999999999986
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=9.4e-07 Score=88.92 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=112.3
Q ss_pred EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-----eeeeeecccccCeE
Q 001258 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT 906 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~ 906 (1113)
.+++|.+-.+-+-|++++-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+ .+...+ .|.+.|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred eecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 34556678899999988643 3344 567799999987 6889999999999999999864 333444 3889999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccce
Q 001258 907 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985 (1113)
Q Consensus 907 ~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~ 985 (1113)
++..-. ++++|.+.+.+|+|++||+.--++.. -....+||..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN----------------------------------- 345 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN----------------------------------- 345 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence 988776 78899999999999999987633211 1112222211
Q ss_pred eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
...-.-+-+.+....++++++|...|||.+..|.+++++..
T Consensus 346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 11222233456778899999999999999999999998873
No 317
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.1e-06 Score=89.60 Aligned_cols=122 Identities=12% Similarity=0.200 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHH
Q 001258 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFE 75 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~ 75 (1113)
+.-+.|+|+.||..+||.++|..|-++|.+. .++..++++|+.|+...|+...+.-. .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 4557899999999999999999999999975 23778999999999999988877652 111 222247899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccch
Q 001258 76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENE 128 (1113)
Q Consensus 76 l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 128 (1113)
++.|.|+||+..+++.+|+.+.++.+.|....+.+.++....++.++......
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~s 245 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSS 245 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcc
Confidence 99999999999999999999999999999888889999999988886555433
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=7.8e-05 Score=88.08 Aligned_cols=275 Identities=9% Similarity=0.140 Sum_probs=154.8
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~ 830 (1113)
...|.++.|..+...++.+...|.|.+-|.+. ...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence 36899999999999999999999988765442 221111 1146789999999999
Q ss_pred CEEEEEeC-CeEEEEECCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeeccccc
Q 001258 831 SYVMSASG-GKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSK 903 (1113)
Q Consensus 831 ~~l~~~sd-g~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~ 903 (1113)
+.++..+. +++.+ ...+...+....-+ .+....+-|-. ..+.+ -| ..|...-.+.... +...... -.+
T Consensus 122 e~l~liT~~~tll~-mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~-~~~ 196 (1265)
T KOG1920|consen 122 ELLALITGRQTLLF-MTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIE-QDD 196 (1265)
T ss_pred cEEEEEeCCcEEEE-Eeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchh-hcc
Confidence 99999885 55544 33444433222111 11222233321 11111 11 1111111111100 0001111 122
Q ss_pred CeEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE----EcCCe
Q 001258 904 RITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQ 974 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~-----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~----~~d~~ 974 (1113)
.=+++.|--||.++|+. ...+.|++||-+. .... ...+.. +.-.+++|-|.|..+++ .+|+.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCccc-----ccccceeecCCCCeEeeeeecCCCCc
Confidence 34578999999998873 2237899999872 2211 111111 23468999999999998 25678
Q ss_pred EEEEeCCccceeecccc--CCCCCCeeEEEECCCCCEEEE---EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccc
Q 001258 975 LAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHP 1049 (1113)
Q Consensus 975 v~v~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~ 1049 (1113)
|.+|..+.... ..|.. .....++..++|+.++..|++ ......|++|-+.+.....+.... .+ + ..
T Consensus 268 IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~-~---~~-- 338 (1265)
T KOG1920|consen 268 IVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FS-Q---KA-- 338 (1265)
T ss_pred EEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--cc-c---cc--
Confidence 99998654332 22221 112344999999999999987 444555999998876544322210 11 1 11
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258 1050 LVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1050 i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
-++|+|.....|..-..+|...+.+
T Consensus 339 -~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 339 -LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred -cccccCCCceeEEEEecCCcEEEEE
Confidence 1677776555555554555544433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=7.1e-07 Score=62.55 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.1
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=3.9e-07 Score=102.10 Aligned_cols=198 Identities=16% Similarity=0.200 Sum_probs=143.9
Q ss_pred ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC--cEE
Q 001258 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC 927 (1113)
Q Consensus 850 ~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--~v~ 927 (1113)
+..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+.+.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34456777888899999999 889999999999999999999999999999999999999999998877665433 467
Q ss_pred EEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccC--CCCCCeeEEEEC
Q 001258 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1004 (1113)
Q Consensus 928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~--~h~~~v~~l~~s 1004 (1113)
+|++...-. ..... ..-.++.|+.....-+.| ......+||+.|+....++..+ +....-.+..||
T Consensus 1171 LW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 999876211 11111 234678888876655554 4467889999999887774421 123344788999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1005 ~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|+.++++ .|| .+||+...+.+++|.-. +..+. =.|+| .|+.++.-+ .|||+++-+
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~f-------t~~~~---G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQF-------TDYGG---GGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhh-------eeccc---ccccC-CCceEEeec-----hhhhhHHHH
Confidence 9999887 466 57999888877776521 11111 36788 566666543 578877655
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.36 E-value=0.00012 Score=76.47 Aligned_cols=207 Identities=17% Similarity=0.183 Sum_probs=131.4
Q ss_pred ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc-cceeee
Q 001258 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 896 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~ 896 (1113)
...++++.||+++++.. .-.|.|.|+..++.+.++... .+..+ | |.+++-+.+-|.||.+.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE-E-ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 45578999999999875 578999999999988877522 22222 2 3244567788899999999887 455442
Q ss_pred ee----cccccCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCCceEEEccCCcEE
Q 001258 897 KL----KGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 897 ~l----~~h~~~V-~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~spdg~~l 967 (1113)
+. ..-.+++ ..-+++..+..++-.+.+|.|+--|+................ ....++.-..+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 21 1112222 233444555566667888888888877654322222221110 00111344668898876666
Q ss_pred EE----EcCC-------eEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeecC
Q 001258 968 LV----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 968 ~~----~~d~-------~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
.+ +.++ .|.++|+.+++.+..+.. ..++.+|..+.|.+ +|++.+ .++.+.|||..+|+.+.++.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 55 2222 588999999999999875 45788999999888 555544 57899999999999998876
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.35 E-value=0.0011 Score=78.71 Aligned_cols=274 Identities=14% Similarity=0.131 Sum_probs=146.4
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
..|..+.|..+.+.++.+..+|.|.+-|..+......-... ..|.+++|+||+..++..+..+++.+-.- +- .++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cch
Confidence 35666777777778999999999999988776543332222 35899999999999999999888866432 11 111
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
....-+...-. ....+..+....-.-+....+
T Consensus 144 ~E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 144 AEKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred hcccccccccc------------------------------------------------ccccceecccccceeeecchh
Confidence 11000000000 000011111110000010000
Q ss_pred CCCCcce---ecccCcccccCceEEEEEeCCCceEEEeec----C-CeEEEEEccccccCCCCceeeeecCeecCCCCcc
Q 001258 735 SEPNQCR---SLRLPENLRATKISRLIFTNSGNAILALAS----N-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1113)
Q Consensus 735 ~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 806 (1113)
.....-. .-..+.......=.++.|--||+++++..- + ..++|||-+ |.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~ 232 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA 232 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence 0000000 000000001223356889999998877322 3 678888754 11
Q ss_pred ccccccCCCCCCCCccEEEEecCCCEEEEEe----CCeEEEEECCC---CceeeeecCCCCCeeEEEEecCCCcEEEE--
Q 001258 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI-- 877 (1113)
Q Consensus 807 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~la~-- 877 (1113)
+-.. .....+.-.+++|-|.|..+++-. |+.|.+|.-+. +.....++.....+..++|+. ++.+||+
T Consensus 233 Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~ 308 (1265)
T KOG1920|consen 233 LNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT 308 (1265)
T ss_pred hhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence 1110 001223345789999999999864 57799998653 222233343444589999999 8999998
Q ss_pred -EecCCcEEEEEcccce--eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 001258 878 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS 930 (1113)
Q Consensus 878 -g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~L~s~s~D~~v~iwd 930 (1113)
......|++|-+.+.. +.+.+.-..... +.|+|.. ..|..-..+|...+++
T Consensus 309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 4455569999887632 223333222222 6676632 2233333455544444
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=0.0019 Score=63.21 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=84.5
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
+..-+|.+.+++.|+..+.+.--|..+|+..-+. ++ ..+|.+-+.- -|++++.|...|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~-----------------il---g~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA-----------------IL---GVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeeh-----------------hh---CceeeeeeEE-ECCEEEEEEccCc
Confidence 3445666778999999999999999999876431 11 1233332222 5788999999999
Q ss_pred EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 507 (1113)
+++.+.++|+....+..+.. -=......+++. ++..|+.|++.+.-|..+..++...+-
T Consensus 75 lYfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence 99999999976654333221 112233456677 799999999999999999999887663
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=3.3e-05 Score=87.24 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=136.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeeecC-CCCCeeEEE-------------------EecCCCcEEEE-EecCCcE
Q 001258 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLA-------------------FHPQDNNIIAI-GMDDSSI 884 (1113)
Q Consensus 828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~-------------------~s~~d~~~la~-g~~dg~v 884 (1113)
.||+||..-. +..|...+++..++-+.+.- ....+..+. ++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 5889999887 46677777776655433321 111222222 334 4544422 2234567
Q ss_pred EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 960 (1113)
.+.|..+.+...++.-- +....+++++||+++++.+.+. ++..-+... ......... -..-++
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni----------~~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNI----------ARIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEch----------HHHHHh
Confidence 77787776666555432 2446788999999998886322 222222211 100000000 001134
Q ss_pred ccCCcEEEEEcCCeEEEEeCCc-----cceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCce-----
Q 001258 961 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1029 (1113)
Q Consensus 961 spdg~~l~~~~d~~v~v~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~----- 1029 (1113)
.++|++..+ .++.|.+.|..+ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 557887666 467899999998 345554443 56788899999999977655 589999999988663
Q ss_pred -------eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1030 -------RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1030 -------~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
..++. -...|+..+|.+ +|+...|--.|..|..|++.+
T Consensus 361 ~~~~~~vvaeve----------vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE----------LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec----------cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33322 123466788987 688889999999999999987
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.1e-05 Score=91.74 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=133.2
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1113)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|.++.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 778889999998887777655555665554 5689999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEEEEEcCCeEE
Q 001258 908 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 976 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l~~~~d~~v~ 976 (1113)
+.. .|+.|+++|. |.-|+|||++.-+.. .++.+..+ ..-+.|.|. .+..+++.-|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 766 5889999876 456899999884432 22333322 245677774 3344447888888
Q ss_pred EEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 977 IFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 977 v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
+.|..+..- ...+........+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888433221 11222223355699999999999999999999999997
No 326
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.26 E-value=0.023 Score=66.69 Aligned_cols=593 Identities=11% Similarity=0.095 Sum_probs=283.1
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1113)
..++..+-..|+.+-++| +|.+||.-|.=.+-.+.+-..... ....++ .+ ..-++|..++.-.+
T Consensus 301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ile--t~-~NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILE--TF-VNLGPIVDMCVVDLD 365 (1096)
T ss_pred EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhh--hc-ccccceeeEEEEecc
Confidence 345566677788888888 588899877666655544322110 000001 11 12347877776542
Q ss_pred ---CCeEEEEe---CCCeEEEEEccCCceeeeeeeeecccCCeeEEE--EcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 432 ---GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 432 ---g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
+..+++|+ .||+++|..-.=+-.......+.| -..++.+. +.++-.. +++.+-.+ .-++..+...-...
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~ 442 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEET 442 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEe
Confidence 23555553 589999875433221111223445 44677777 4443332 23333222 22333332221111
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
...+.......+..+. -+++.|+=.. ...||+++-. .....+..++......+.
T Consensus 443 ~~~gf~~~~~Tif~S~-i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~---------------------- 496 (1096)
T KOG1897|consen 443 EDPGFSTDEQTIFCST-INGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVS---------------------- 496 (1096)
T ss_pred ccccccccCceEEEEc-cCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEe----------------------
Confidence 1122222222222211 1112222221 2235555332 122222222221111111
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC--C----CEEEEEECCCcEEEEEcCCCccceecc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
-+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.......+...
T Consensus 497 ~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 497 ANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred ecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence 122246667767777777776655 333322333457889999973 2 378888776665544322221111111
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC--
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS-- 735 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-- 735 (1113)
.-.... -|.+ ..... +-.+..++.++..||.+.-|-+....
T Consensus 576 ~l~~~~------------iPRS-------------------Il~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 576 QLSGEI------------IPRS-------------------ILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred ccCCCc------------cchh-------------------eeeEE------eeccceEEEEEcCCceEEEEEEEcccce
Confidence 000000 0000 00001 11236788899999988766655322
Q ss_pred CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1113)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 815 (1113)
.....+ . .....++.--.|+..++.-+.+.+|.-..+|.-. +.+....+.-
T Consensus 619 lsd~Kk-~----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~- 669 (1096)
T KOG1897|consen 619 LSDRKK-V----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL- 669 (1096)
T ss_pred Eccccc-c----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-
Confidence 111110 0 1123445555565555555555555444444221 1100000000
Q ss_pred CCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEec-----------C-
Q 001258 816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D- 881 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~-----------d- 881 (1113)
..-..+..+.-+.-...++++..+.+++.-++.-+. ++++.- ......+++.+ ....+++.+. .
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcCCcc
Confidence 000111111112233467777778888877764333 233332 23355566665 3334433321 1
Q ss_pred --CcEEEEEcccceeeeeecc----cccCeEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCcccccccccc
Q 001258 882 --SSIQIYNVRVDEVKSKLKG----HSKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQI 944 (1113)
Q Consensus 882 --g~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~ 944 (1113)
..++++|-++.+.+....- -...|.++.|..| +.++++|.. .|.|.++.+......+......
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 1467777666554433221 1124555668877 677777643 3567777766522211111111
Q ss_pred CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
.. + ...+.-.-...++++-+..|++|++.+.+.++.-. .|..++..+.+.-.|..+++|..=+.|.+-..
T Consensus 828 v~------G--av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 828 VK------G--AVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred ec------c--ceeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 11 1 11222222334555667889999999886665544 66889999999999999999988888777655
Q ss_pred CCCc--eeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1025 ANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1025 ~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
...+ ..-. ...+ +..+.+. +.+. +++..+.+..+|.+++-...+
T Consensus 898 ~~~eg~f~ev--ArD~----~p~Wmta--veil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 898 KGDEGNFEEV--ARDY----NPNWMTA--VEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred eccCCceEEe--ehhh----Cccceee--EEEe--cCceEEeecccccEEEEEecC
Confidence 4433 3321 1122 2233443 4443 456777778889998887653
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.9e-05 Score=88.91 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=130.7
Q ss_pred CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~ 939 (1113)
..+.|++++. ++++.|+.+|.|++++... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3577777764 7999999999999999763 33 444446554 56899999999999999999888543221
Q ss_pred cccccCCCCCCCCCCCceEEEccC-----CcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spd-----g~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
..-+ .++..++++|| .+.+++|.+..+.++.-.-..-........-.++|.++.| .|.++|-++
T Consensus 109 -----~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 -----YDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred -----EecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1111 36789999998 5667776554477776443222222222234789999999 477888887
Q ss_pred CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1015 ~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
++| |+|||..+++.+..+.++... ......+-.+.|.+ ...|+.| ..-+|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~---~R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQS---VRPELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCC---CCcccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 666 999999999999887754422 22334444688876 3456554 56679999988
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0001 Score=76.41 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=70.7
Q ss_pred cccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
++.+|...|..++|||..+ +|..++.+..|+|.|+.+...+. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6888999999999999777 78889999999999999987665 55666 78999999999876 8899999999999
Q ss_pred EeCCCCc
Q 001258 494 WDATNGA 500 (1113)
Q Consensus 494 wd~~~~~ 500 (1113)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998643
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=2.5e-06 Score=59.77 Aligned_cols=34 Identities=24% Similarity=0.604 Sum_probs=32.7
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS 448 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 448 (1113)
.+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5789999999999999999999999999999997
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=9e-05 Score=84.27 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=128.1
Q ss_pred EEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCcccc-
Q 001258 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 938 (1113)
Q Consensus 866 ~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~- 938 (1113)
+|++ ++..+|.|+.+|.|.+++ .+-+.+..++.+... |+.+....+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 677899999999999987 345556788888777 666665556689999988765 8999998754332
Q ss_pred cccc---ccCCCC-CCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccc--eeeccccCCCCCCeeEEEECCCCCEEE
Q 001258 939 NRFL---QIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1113)
Q Consensus 939 ~~~~---~~~~~~-~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1113)
..+. .+..-. ...+.++..++.+.+-+.+|+| .+|.|..+.-+-.. ..+.-..+....+|+.+++..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2222 222211 1123578899999999999998 78888887532111 111111122378999999999998844
Q ss_pred EEeCCCcEEEEecCCCceeee-cCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1012 ACFLDATVCVFSAANLKLRCR-INPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1012 s~~~Dg~v~vwd~~~~~~~~~-~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
-+..-..|.+|.+........ +. .|...+. |.++++.-+. +++++ +..|.+++...-.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence 444567899999984332222 22 3333333 4666653322 44433 5668888766433
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.00093 Score=74.08 Aligned_cols=281 Identities=11% Similarity=0.143 Sum_probs=142.4
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeee------------ecCeecCCC--------Ccccccccc
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS------------VAPQLWQPP--------SGIMMTNDV 812 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------------~~~~lw~~~--------~g~~~~~~~ 812 (1113)
.|+.+.|+++..-++++...|.+.||.+....+......... ..-.+-|+. .|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578999999988899999999999999987644320000000 011122221 232222222
Q ss_pred CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee--cC------CCCCeeEEEEec----CCC---cEEE
Q 001258 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA 876 (1113)
Q Consensus 813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~--~~------~~~~i~~l~~s~----~d~---~~la 876 (1113)
.. ..+.|++++.| |--++|+|. +|.+.|.|++....+..- .. ....++++.|+- +|+ -+|+
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47889999997 556999999 899999999877665441 11 234588888872 133 4788
Q ss_pred EEecCCcEEEEEccc---ceeeeee----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc---ccCC
Q 001258 877 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL---QIPT 946 (1113)
Q Consensus 877 ~g~~dg~v~iwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~ 946 (1113)
+|+..|.+.+|.+.- +.....+ ..+.++|..+ ...+.++++....... ....
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998752 1111111 1122222222 2223333322111100 0001
Q ss_pred CCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEEC-----CCCCEEEEEeCCCcEEE
Q 001258 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus 947 ~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~Dg~v~v 1021 (1113)
+. +...+++++++..++++...+.+...... ...-....+++- ..+..|++-..||.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 11235667889999999999888766654 112223344452 35667889999999999
Q ss_pred EecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258 1022 FSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus 1022 wd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
+.+...+.+..+..... -....+.. .++++ +|+.++-.+ ...+.++.+
T Consensus 287 ~SLP~Lkei~~~~l~~~---~d~~~~~~--ssis~-~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPP---LDSRRLSS--SSISR-NGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS------HHHHTT---EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred EECCCchHhhcccCCCc---cccccccc--cEECC-CCCEEEEeC-cccEEEEEE
Confidence 99999999988774311 11112222 44555 677766654 334444443
No 332
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.10 E-value=4.8e-06 Score=51.43 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Es 32 (1113)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0034 Score=73.16 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=113.2
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeec---ccCCee--EEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V~--~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
+..+..++.++.|.-.|..+|+.+-....-.. +...+. .++.. ++. .++.++.++.|.-+|.++|+.+-.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566677788899999999886643211000 000110 11121 213 47777889999999999999987765
Q ss_pred ccCcC--EEEEeeeecCCceEEEEEe---------cCCcEEEEEcCCCCCeeeeeCCCCceEEEE-EccCCCeEEecccc
Q 001258 507 GHEAP--VYSVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQGFRK 574 (1113)
Q Consensus 507 ~h~~~--v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~~~~~ 574 (1113)
..... -..+.-.+.-.+..++.++ .+|.+...|..+++.+..+.........+. +.... ... +...
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-GPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-cCCC
Confidence 33221 0001100111113455543 367899999999888876654321110000 00000 000 0111
Q ss_pred Cc-eeEEEecCCCCEEEEEecCC------------------cEEEEECCCCceEEEEccCCCCC----CcCeEEEC----
Q 001258 575 RS-LGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN---- 627 (1113)
Q Consensus 575 ~~-i~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s---- 627 (1113)
.. .....+++.+..++.++.++ .|.-+|..+|+.+..+....+.. ......+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 11 11234455556677776554 78889999999888765322110 00111111
Q ss_pred CCCC---EEEEEECCCcEEEEEcCCCc
Q 001258 628 KDGC---LLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 628 ~~~~---~l~~~~~dg~i~iwd~~~~~ 651 (1113)
-++. .+++++.+|.+..+|..+|+
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc
Confidence 1232 56777788888888888873
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.05 E-value=8.8e-05 Score=84.67 Aligned_cols=183 Identities=11% Similarity=0.118 Sum_probs=129.7
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
++..++.|+-...+..+|+.+.+..+ ...-..+.|.-++ .+++ ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 46678888888889999999877554 2222233455555 4567 799999999999999999999999999999
Q ss_pred CEEEEeeeecCCceEEEEEec---------CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.|..+.. .|+.|+++|. |..|++||++....+.-+..+.++ ..+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P----------------------~flr 272 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP----------------------QFLR 272 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc----------------------hhhh
Confidence 9998763 3468888874 567899999986655433322221 1233
Q ss_pred ecCCC-CEEEEEecCCcEEEEECCCC-ce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258 582 FDTTK-NRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1113)
Q Consensus 582 ~~~~~-~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 646 (1113)
|.|.- ..+++++..|...+-|..+. .+ ......+.....+..+.++++++.++.|..+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33322 35788888999999883321 11 22222222234588999999999999999999999997
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00053 Score=76.73 Aligned_cols=282 Identities=12% Similarity=0.092 Sum_probs=158.2
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
+...|.--+++..+++++.|++-|.+++|+-.. |........+ ....+....++++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--ATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--ccceEEEEEecch
Confidence 455666677888899999999999999987542 2222211111 3445566778888
Q ss_pred CCEEEEEe-CCeEEEEECCCCceee-----ee-cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc----eeeeee
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMA-----TF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKL 898 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~-----~~-~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l 898 (1113)
..++|.|+ .|.|.|+-+....... .. ..|...|++++|++ ++..+.+|...|.|..-.+.+. ...+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 88888888 6889998887533211 11 23677899999999 9999999999999999888772 111233
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC----CcEEEEEcCCe
Q 001258 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQ 974 (1113)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd----g~~l~~~~d~~ 974 (1113)
-.-.+.|..|... ++.+|++..... .+++++.....+ .-.+...+. .-...+|-|. .+-.+++..-.
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r~--~Lc~tE~eti~Q-IG~k~R~~~-----~~~GACF~~g~~~~q~~~IycaRPG 237 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTRC--ILCQTEAETITQ-IGKKPRKSL-----IDFGACFFPGQCKAQKPQIYCARPG 237 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhhh--heeecchhHHHH-hcCCCcCCc-----cccceEEeeccccCCCceEEEecCC
Confidence 3345667777665 445555544332 344444322110 000111110 1244555554 33444455555
Q ss_pred EEEEeCC-ccceeecccc---------------------------CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 975 LAIFETT-KLECVKQWVP---------------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 975 v~v~d~~-~~~~~~~~~~---------------------------~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
.|+|..+ .|+.+++... +.|.-....+.+-.++ ++++-+.-| |+|+|..+
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~ 315 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN 315 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence 6777654 2333222110 0001111111222222 444444444 88999888
Q ss_pred CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1027 LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1027 ~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
...+.... + ...|.. ++. +|+-|.+-..||.+++..+.+.+
T Consensus 316 ~~v~l~se-------~-~~DI~d--Vs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 316 SQVYLWSE-------G-GHDILD--VSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred ceEEEeec-------C-CCceeE--Eee---cCceEEEEecCCceeEEEeehhH
Confidence 77765432 1 122222 332 35666666778888888776655
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.04 E-value=0.0013 Score=73.06 Aligned_cols=268 Identities=14% Similarity=0.190 Sum_probs=139.4
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE------ee------------eeeeeccCCCC------ccccccc
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACS------MPLQAAL 415 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 415 (1113)
.|+++.|+++... |++|...|.|.||.+..++... .. +-++.|+.... .-.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999886 8999999999999987654432 00 11222332111 1123345
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeec------ccCCeeEEEEc---C--CC-CeeEEE
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS---H--PN-KQLCVI 483 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s---~--~~-~~~~l~ 483 (1113)
+....++|++++.| |=-++|.|+.+|.+.|.|++....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66668999999998 666999999999999999987765543 22333 34468888886 2 22 124678
Q ss_pred EecCCCcEEEEeCC-C--Ccee----eEeeccCcCEEEEeeeecCC-------------------ceEEEEEecCCcEEE
Q 001258 484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA 537 (1113)
Q Consensus 484 s~s~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i 537 (1113)
.|...|.+.+|.+. . +.-. .....+.++|..+..-.... -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88888999999775 1 2111 11124566766665221110 012333444677888
Q ss_pred EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1113)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1113)
+...+.+...........+..+.+-+-.. ...+..|++...+|.|++|.+...+.+..+.....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecc----------------cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 87766544433331111222222211000 11223478888999999999999998888765421
Q ss_pred --CCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 618 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 618 --~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
...+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 123567788888887766544 34444443
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.04 E-value=0.0035 Score=65.87 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=82.4
Q ss_pred CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe----------cCCcEEEEEcCCCCCeeeeeCCCC-ceE
Q 001258 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGR-WCT 557 (1113)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v~ 557 (1113)
+.+.|.|..+++.+..+..--..- +.++ ++++.+++++ ..-.|.+||..+.....++..+.. ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~--~~~s--pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN--VALS--PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE--EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccCCc--eeEC--CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 478899988888877665322221 2333 4556666543 234699999998877665554432 111
Q ss_pred EEEEccCCCeEEeccccCceeEEEecCCCCEEEE--EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLA 634 (1113)
Q Consensus 558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 634 (1113)
.+. ......++.++++++. .+-...|.|-|+..++.+..+...+ |.-.-| ..+-+.
T Consensus 93 ~~~---------------~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~~~~F~ 151 (342)
T PF06433_consen 93 VVP---------------YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSGNRGFS 151 (342)
T ss_dssp BS-----------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEETTEEE
T ss_pred ecc---------------cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecCCCceE
Confidence 110 1112344555555555 3446679999999999988886543 233334 224577
Q ss_pred EEECCCcEEEEEcCCC
Q 001258 635 VSTNDNGIKILATSDG 650 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1113)
+-+.||.+.-..+...
T Consensus 152 ~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 152 MLCGDGSLLTVTLDAD 167 (342)
T ss_dssp EEETTSCEEEEEETST
T ss_pred EEecCCceEEEEECCC
Confidence 8889999988888743
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.03 E-value=0.0055 Score=68.32 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=63.4
Q ss_pred cCCCCeEEEEEe--------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 367 HPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 367 spdg~~ll~~gs--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
|||++++|+.-. ..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 789998665321 23678899999876543 11124578899999999999988
Q ss_pred eCCCeEEEEEccCCceeeeeeeeec-------c---------cCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEe
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD 495 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd 495 (1113)
. ++.|.+++..++...+. +..| - -+.-..+-|||||++ |+.. -.+..|+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence 6 56799999887754432 2222 0 122367889999996 4433 2344444443
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00059 Score=77.95 Aligned_cols=203 Identities=12% Similarity=0.159 Sum_probs=136.0
Q ss_pred EEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc-----
Q 001258 824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD----- 892 (1113)
Q Consensus 824 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~----- 892 (1113)
-++++.+..++.|+ +|.|.+.+- ..+.++.++.+...+...-+.-++..+|++-++|+ .|+||++..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 45678888999998 898888773 33445777777777333334432446788777665 4899998642
Q ss_pred -eeee--eecc-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 893 -EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 893 -~~~~--~l~~-----h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
.++. .+.+ ...++.+++.+.+-+.+|.|-.||.|..+.=+--+....+......+. .+|+.+++..|+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d~ 183 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSDG 183 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecCC
Confidence 2331 2222 346788999999999999999999999885333222222222222222 579999999999
Q ss_pred cE-EEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 965 IH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 965 ~~-l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+. +.++.-..|.+|.+.... ...-..+.|+..+.|-.|++-...+++++ +..+.+|+.+.......+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 98 455778889999998444 33333457788999999987655355554 567999998855444343
No 340
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.00 E-value=5.5e-06 Score=64.10 Aligned_cols=52 Identities=33% Similarity=0.523 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001258 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1113)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1113)
+..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999988544322323 49999999999999998764
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00056 Score=77.59 Aligned_cols=186 Identities=13% Similarity=0.148 Sum_probs=122.4
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
.+++++++ ++.++.|+.+|.+++++.+.. .... + .|... ..+|.+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Gey 85 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGEY 85 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCce
Confidence 34444443 556888888999998875421 0000 0 02221 568999
Q ss_pred EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecC----CCcEEEEEecCCcEEEEEccc-c-eeeeeecccccCe
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV-D-EVKSKLKGHSKRI 905 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~la~g~~dg~v~iwd~~~-~-~~~~~l~~h~~~V 905 (1113)
+++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.- | +.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 8999999998887776665 3457999999993 256888899888 77775332 1 1111355567899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~ 981 (1113)
.++.|. |+++|-++.+| |++||+.+....... ..+............+.|.++.+ |++|-..+|+|..++
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999994 88999999888 999999886543322 11112221223345677777665 455655667777766
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0041 Score=72.45 Aligned_cols=241 Identities=10% Similarity=0.077 Sum_probs=138.2
Q ss_pred CEEEEEe-CCeEEEEECCCCceeeeecCCCCC-----e-eEEEEecCCCcEEEEEe---------cCCcEEEEEccccee
Q 001258 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV 894 (1113)
Q Consensus 831 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~d~~~la~g~---------~dg~v~iwd~~~~~~ 894 (1113)
..++.++ ++.|.-+|.++++.+-.+...... + .+..+. + .++++++ .+|.|.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4555555 899999999999998776543321 1 122222 2 3455554 367899999999988
Q ss_pred eeeeccccc--------------------Ce-EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001258 895 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE 935 (1113)
Q Consensus 895 ~~~l~~h~~--------------------~V-~~l~~s~d~~~L~s~s~D~------------------~v~iwd~~~~~ 935 (1113)
+-.+..... .| ...++.+.+..++.++.|+ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 866543211 01 1234444566777777665 68889999887
Q ss_pred cccccccccCCCCC-CCCCCCceEEE-ccCCc---EEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE
Q 001258 936 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1113)
Q Consensus 936 ~~~~~~~~~~~~~~-~~~~~i~~~~~-spdg~---~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1113)
..-........... ........... .-+|. .+++ +.++.+..+|.++|+.+-..... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence 65332111110000 00000000001 12343 3444 47899999999999987765421 12233444 23
Q ss_pred EEEE------------------eCCCcEEEEecCCCceeeecCCCcccCCC-cccCc--cceEEEEeCCCCCEEEEEeCC
Q 001258 1010 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAG-VSSNV--HPLVIAAHPQEPNEFALGLSD 1068 (1113)
Q Consensus 1010 l~s~------------------~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g-h~~~v--~~i~~~~~p~d~~~l~s~~~D 1068 (1113)
++.+ ..+|.|.-.|+.+|+.+-+.......... -.... .++.+ .+..|+.++.|
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~d 415 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAAD 415 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECCC
Confidence 3332 23678888999999988776532110000 00011 11112 35788999999
Q ss_pred CcEEEEeccCCCccccCC
Q 001258 1069 GGVHVFEPLESEGKWGVP 1086 (1113)
Q Consensus 1069 g~v~vW~~~~~~~~~~~~ 1086 (1113)
|.|+.+|..+|+..|+.+
T Consensus 416 G~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 416 GYFRAFDATTGKELWKFR 433 (488)
T ss_pred CeEEEEECCCCceeeEEE
Confidence 999999999999888764
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00054 Score=71.22 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=79.6
Q ss_pred EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC-CEEEE
Q 001258 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 919 (1113)
Q Consensus 841 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~L~s 919 (1113)
+++++..+.+...-+..+...|..++|||....++..++.+..|.|.|+.+..++..+..| ..+++++|.-|. .++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 7777777777777777788889999999944448999999999999999999988888888 789999999765 45666
Q ss_pred EeCCCcEEEEeCCCCcc
Q 001258 920 SGADSQLCVWSSDGWEK 936 (1113)
Q Consensus 920 ~s~D~~v~iwd~~~~~~ 936 (1113)
|...|.|.|||+...+.
T Consensus 254 Gl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCceEEEEEccCCCc
Confidence 77899999999987554
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.93 E-value=0.0043 Score=69.16 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=57.5
Q ss_pred EEEEe-cCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeE-EEEecCCCcEEEEEecCC----cEEEEEcccc
Q 001258 823 CFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDS----SIQIYNVRVD 892 (1113)
Q Consensus 823 ~l~~s-~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg----~v~iwd~~~~ 892 (1113)
...+. +++..++..+ +| .|.+++..++. .+.+....-.|+. +.++++++.+.+++..++ .|+.-++..+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 7777666554 54 57777776655 3455555556754 677884455666666533 5555566623
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEe
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s 921 (1113)
..+..+....+.-..+.|||++++++-..
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 34455554444336899999999987543
No 345
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.91 E-value=0.041 Score=64.38 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.2
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1113)
|.|.-+|+.+++..-..+............ .+.+++.++.||.++.+|.++|+.+.+.+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457888888888776655332222222222 3457777888999999999999999877654
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.001 Score=74.46 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=94.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
|...|.=-+++..+++ ++.|+.-|.+.+|+-.+++.+.. ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5566666778888886 99999999999999888776542 1233456777888999999999
Q ss_pred EEeCCCeEEEEEccCCceeeee--eee-ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQH--LEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~--~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
.|+..|.|.|+-+..+..-... ..+ ..|...|++++|++|+. .+++|...|+|.+-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 9999999999988764322111 111 23788999999999999 699999999999888776
No 347
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.87 E-value=2.1e-05 Score=52.98 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001258 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1113)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1113)
-++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0015 Score=73.34 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=117.3
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~ 830 (1113)
....+.+.++|+|+.+++ +.+|...++..... .. ...+.....+|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-------------------------r~-----k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-------------------------RN-----KAFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-------------------------EE-----EEEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-------------------------cc-----cccCceeEEEEecCc
Confidence 345688999999998777 66777777652100 00 022344668898866
Q ss_pred CEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE
Q 001258 831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 910 (1113)
Q Consensus 831 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 910 (1113)
++.+.-..++|.++.--..+....+... ..+..+- .|.+|+..+.+ .|.+||..+++.++.+... +|..+.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6555545788999743232332333321 1233332 26777766544 8999999999999998744 3899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCC------ccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc
Q 001258 911 SHALNVLVSSGADSQLCVWSSDGW------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1113)
Q Consensus 911 s~d~~~L~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~ 984 (1113)
+++|.+++-.+.+ ++.|++.+.. +..-........... ..|.+.+|..| -++.+... .++-+ -.|+
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d-~fiYtT~~-~lkYl--~~Ge 224 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED-CFIYTTSN-HLKYL--VNGE 224 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-TT-EEEEE--ETTE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC-EEEEEcCC-eEEEE--EcCC
Confidence 9999999999866 5888876542 000000111111101 36788888887 44444444 66653 3333
Q ss_pred e--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 985 C--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 985 ~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
. +..+ ..++.=+.+.+....++....|+.|..+.++..
T Consensus 225 ~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 TGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred cceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 2 2322 456777777887778888888888888877644
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=0.0013 Score=72.81 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=81.3
Q ss_pred CCCccEEEEecCC-CEEEEE----e-CCe----EEEEECCCCceee--e-ecCCCCCeeEEEEecCCCcEEEEEecCCcE
Q 001258 818 EEAVPCFALSKND-SYVMSA----S-GGK----ISLFNMMTFKTMA--T-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 884 (1113)
Q Consensus 818 ~~~v~~l~~s~~~-~~l~~~----s-dg~----i~vwd~~~~~~~~--~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v 884 (1113)
+....++.||-.. ..+.+. + +|. -.+|++...+..+ . --.....+.+++++| +...|+.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 4455677787533 333332 1 333 4566665443221 1 123567899999999 88899999999999
Q ss_pred EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~ 934 (1113)
.+||...+.. .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876633 23344566889999999999999999999999998763
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.80 E-value=0.0022 Score=72.07 Aligned_cols=220 Identities=16% Similarity=0.212 Sum_probs=117.8
Q ss_pred CCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
...+..+.++|+|+++++++||...|+......... .+.....+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 445789999999999999999999999854433322 23456789998 555 66666688999974333333233
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v 977 (1113)
+... ..+..|-. |.+|...+.+ .|.+||+++++..... .. ..|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i--~v--------~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRI--DV--------SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE--SS---------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEE--ec--------CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12344433 7888777665 7999999986543211 11 1478999999999999987888888
Q ss_pred EeCCcc--------------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258 978 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus 978 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
++.+.. +.+... ...|.+.+|..| -++++.. . .++.+--.....++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYtT~-~-~lkYl~~Ge~~~i~~ld--------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYTTS-N-HLKYLVNGETGIIAHLD--------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE-T-T-EEEEEETTEEEEEEE-S---------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEEcC-C-eEEEEEcCCcceEEEcC---------
Confidence 775543 222221 457888888766 4444443 3 56652222222222222
Q ss_pred ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
..+. -+.+.| ..+.+.....|+.|..+.+...+
T Consensus 233 -~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -KPLY--LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -S--E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -CceE--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 1222 245555 34688888899999988876544
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.79 E-value=0.016 Score=59.50 Aligned_cols=187 Identities=9% Similarity=0.105 Sum_probs=103.6
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
-.+++..++|.|+...|+++....+.|...+.. |+.+.+.+ +.+ -+....|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445699999999988888888888999888864 77765432 233 24678889988888877
Q ss_pred EEeCCCeEEEEEccCCce---eee--eeeee---cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CceeeEe
Q 001258 437 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 505 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~ 505 (1113)
+--.++.+.++++..... ... ...+. .+...+-.++|.+.++. |+.+-...-..|+.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766789999999843221 111 11111 35567999999999885 33444555556665543 2222211
Q ss_pred --------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------CceEEEEEccCCC
Q 001258 506 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT 566 (1113)
Q Consensus 506 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~ 566 (1113)
......+.++++++. .+.+++....+..|..+| ..++....+.... .....+++.++|+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 113345778888765 457888888888898888 3444443333322 2345566666654
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.79 E-value=0.0039 Score=66.83 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=88.9
Q ss_pred CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec---CC-cEEEEEccc-ceeeeeecccc--cCeEEEEE
Q 001258 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHS--KRITGLAF 910 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~--~~V~~l~~ 910 (1113)
...|.-.|+.+++....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|. ..+..=-|
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 3456667888877654444 44567889999977777777543 22 236776654 34344444333 33455578
Q ss_pred cCCCCEEEEEeC-----CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCC-----------
Q 001258 911 SHALNVLVSSGA-----DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET----------- 973 (1113)
Q Consensus 911 s~d~~~L~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~----------- 973 (1113)
.+||..|.--+. +..|.-+|+.+++... ....+ .....-.++||++++. |.|.
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE--------------
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 999987765332 4467777887754321 22221 2245667899999987 5442
Q ss_pred -----eEEEEeCCccceeeccc------cCCCCCCe--eEEEECCCCCEEE-EEeCCCcEEEEec
Q 001258 974 -----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1024 (1113)
Q Consensus 974 -----~v~v~d~~~~~~~~~~~------~~~h~~~v--~~l~~s~dg~~l~-s~~~Dg~v~vwd~ 1024 (1113)
.|.++++.++....... ...|...+ -...|||||++++ +....|...||-+
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887765432111 10111111 3579999999865 5556777776644
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.78 E-value=0.00041 Score=76.57 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=89.6
Q ss_pred ceeEeccCCCCcEEEEEcCCCCeEEEEE----ecCCc----EEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc
Q 001258 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421 (1113)
Q Consensus 350 ~~~~~~~h~~~V~~~~~spdg~~ll~~g----s~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 421 (1113)
++...+.-.....++.||-...+.+.+- +.+|. -.+|++..++.. ...+ +-.....
T Consensus 197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsv---------------tsipL~s 260 (545)
T PF11768_consen 197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSV---------------TSIPLPS 260 (545)
T ss_pred EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEE---------------EEEecCC
Confidence 3444445556668888987555444442 22443 456776654322 1111 2234566
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 499 (1113)
.|.|++++|+.+.|+.|+.||+|.+||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecC
Confidence 8999999999999999999999999999876422 223455689999999999 8999999999999997643
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.74 E-value=0.019 Score=61.73 Aligned_cols=286 Identities=14% Similarity=0.107 Sum_probs=136.2
Q ss_pred EEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 757 LIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
=+|.+||+.|+.++. +|.-.+|-+ |+.++...+. +.. .........++++++.++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEEE
Confidence 367888977766555 555544432 4445554442 110 1122335667788888876
Q ss_pred Ee-CCeEEEEECCCCceeeeecCCCCCeeEEEEec-CCCcEEEEEe---c-------------------CCcEEEEEccc
Q 001258 836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVRV 891 (1113)
Q Consensus 836 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~d~~~la~g~---~-------------------dg~v~iwd~~~ 891 (1113)
.. +..|+-.|+++.+....+......+-...|.. .|+..++-.- . ...|.-.|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 65 67899999999887666665666555555542 2555554221 1 12355567777
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeC----CCc-EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
|+....+. -..-+..+.|||....++.=+. |.. -+||-+++.......+..... ...+..=-|.|||..
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGST 251 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCE
Confidence 76544443 3345678899986655555433 332 377876653322211111111 134566689999998
Q ss_pred EEE-E-----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC----------------cEEEEec
Q 001258 967 FLV-V-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSA 1024 (1113)
Q Consensus 967 l~~-~-----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------------~v~vwd~ 1024 (1113)
+.. + .+..|.-+|..+++...... ......+..++||++++-=+.|. .|+++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 876 3 23467788888887643322 22344566689999887533332 4677888
Q ss_pred CCCceeeecCC-Ccc-cCCCcccCccceEEEEeCCCCCE-EEEEeCCCcEEEEecc
Q 001258 1025 ANLKLRCRINP-SAY-LPAGVSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1025 ~~~~~~~~~~~-~~~-~~~gh~~~v~~i~~~~~p~d~~~-l~s~~~Dg~v~vW~~~ 1077 (1113)
.+++...-... ..+ ...++. .+.--...|+| ||++ |.++...|...|+-++
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~-q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDR-QVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTEEEEEEE-------BTTBS-STT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCceeeeeeccCcceeecCCC-ccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 87765321111 001 111221 11112489999 5666 5566667776666543
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.01 Score=66.59 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=145.8
Q ss_pred CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec---CCcEEEEEccccee
Q 001258 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 894 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~ 894 (1113)
....+++++.+..+.+.. ++.|.+.|..+........... ....+++++ +++.+.++.. ++.+.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788899998666655 6899999988777666654322 578899999 5555544443 68999999998888
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE--
Q 001258 895 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-- 970 (1113)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-- 970 (1113)
+.....-..+ ..++++|+|..+..+. .++.|.+.|.++..... ........+ .....+.++|+|.++.+.
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEec
Confidence 8775443344 8999999999666555 78899999977643321 000011111 244789999999987774
Q ss_pred cC--CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEecCCCceeeecC
Q 001258 971 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 971 ~d--~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~~~~~~~~~~~ 1034 (1113)
.+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 58889999888877663222223 56778999999999887544 889999999888877654
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.019 Score=64.83 Aligned_cols=198 Identities=15% Similarity=0.150 Sum_probs=108.1
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 824 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 824 l~~s~~~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
++.+|.|-.+|...|. .|.||+.. |+.+..+.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666655543 58999875 455555544448899999987 54 455667899999999863
Q ss_pred ce------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-ccccc-ccCCCCC--CCCCCCce-EEE
Q 001258 892 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDTR-VQF 960 (1113)
Q Consensus 892 ~~------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~i~~-~~~ 960 (1113)
.. .+....-....+....+..+|-.+. ..++.+.+- ...... ..+.. ..+.... ........ ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 1111111223333334444553333 334444333 222211 00011 1111000 00001111 234
Q ss_pred ccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 961 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 961 spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+.+....+. ..++.+.+.+....+. . ...+++..|++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 445544444 4555666444332211 1 124689999999999999999999999999887777776665
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.0047 Score=63.38 Aligned_cols=216 Identities=11% Similarity=0.103 Sum_probs=113.4
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
.+.+-...+..++|.|++++++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455556679999999966788889999999999996 47777665432 3567889998888777776678999999985
Q ss_pred CCcccc--ccccccCCCC-CCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc---cceeec-----cc-cCCCCCCee
Q 001258 933 GWEKQK--NRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPIT 999 (1113)
Q Consensus 933 ~~~~~~--~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~---~~~~~~-----~~-~~~h~~~v~ 999 (1113)
...... .......-+. .........++|++.+..|+++ ...-..+|.+.. ...+.. +. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 432211 1101111111 1122457899999987777765 444455555543 111110 11 112355688
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC-ccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258 1000 HATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN-VHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus 1000 ~l~~s~dg~-~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
++++.|... +++.......|..+| .+|+.+..+....... |.... ..+--++|.+ +|++.++ ++-+.++++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 999988654 555566677888899 6677776665332110 10011 1233478887 6755444 455655554
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0073 Score=67.81 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=109.6
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe---cC-CcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1113)
..+.+-|.+ +...+.+......+..-+|+| ++..++... .. ..++++++.+++....+. ..+.-..-+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 345555554 455555555556677788999 666554432 22 469999999876544433 22333456899999
Q ss_pred CEEEEE-eCCCc--EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC----eEEEEeCCccceee
Q 001258 915 NVLVSS-GADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK 987 (1113)
Q Consensus 915 ~~L~s~-s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~----~v~v~d~~~~~~~~ 987 (1113)
+.|+.+ ..|+. |.+.|+.++.. .. +.... +.-..-.|+|||++++..+|+ .|.+++.+..+..+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcc--ee-cccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 888755 45665 55556666442 11 11111 223467899999999985443 58888888776543
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEeC-CCc--EEEEecCCCceee
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACFL-DAT--VCVFSAANLKLRC 1031 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~--v~vwd~~~~~~~~ 1031 (1113)
.... ...-....|||||++|+..+. +|. |.+.|+.++....
T Consensus 321 iT~~---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 321 LTFS---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eecc---CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 3321 112227889999999887764 344 7777776666433
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=0.0001 Score=80.88 Aligned_cols=252 Identities=14% Similarity=0.167 Sum_probs=152.0
Q ss_pred CCCccEEEEecCCC--EEEEEe-CCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEe----cCCcEEEEE
Q 001258 818 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN 888 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~--~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~----~dg~v~iwd 888 (1113)
...+.|++..-+.+ .+++|. +|.|.+-....... ....+++...+++++|++-|.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34466666654433 566776 79988887764322 2334567788999999998888999884 466899999
Q ss_pred cccc--eee--eeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-
Q 001258 889 VRVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 962 (1113)
Q Consensus 889 ~~~~--~~~--~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp- 962 (1113)
+.++ -+. ..+.+ -.....+++|-.|.+++.+|...+.++++|++-...... ..+. ..+..+.++|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence 9876 111 22222 334566899999999999999999999999874211111 1111 1356778888
Q ss_pred CCcEEEEEcCCeEEEEe-CCccce-eeccccC--CCCCCeeEEEECCCCC-EEEEEeCC-CcEEEEecCC------Ccee
Q 001258 963 DQIHFLVVHETQLAIFE-TTKLEC-VKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAAN------LKLR 1030 (1113)
Q Consensus 963 dg~~l~~~~d~~v~v~d-~~~~~~-~~~~~~~--~h~~~v~~l~~s~dg~-~l~s~~~D-g~v~vwd~~~------~~~~ 1030 (1113)
.+.|++...|+.+.+|| ..+-+- +...... .....+..++|.|-.. .+++.+.| ++|+.+|+.. ++..
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 88899988899999999 333322 2222110 0123489999999543 45555544 7799998732 1111
Q ss_pred eecCCCcccCCCcccCccce-EEEEeCCC-CCEEEEEeCCCcEEEEeccC
Q 001258 1031 CRINPSAYLPAGVSSNVHPL-VIAAHPQE-PNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1031 ~~~~~~~~~~~gh~~~v~~i-~~~~~p~d-~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
..+......|-.|.+.+..| ++.||+.+ -+...++-..-++.-+++..
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 11111121122344422222 36677654 23455555555566555543
No 360
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00065 Score=71.18 Aligned_cols=110 Identities=10% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF 74 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (1113)
+.|..+|..++...|..+.+..|-+|+|...+ +..+-++|.+|+-..|++.+..-. .+.. + ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~-~-~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE-K-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc-c-cccHHH
Confidence 44689999999999999999999999998753 788999999999999999998752 2221 1 224889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccChHHHHHHHH
Q 001258 75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1113)
Q Consensus 75 ~l~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1113)
.|..+.|++++..|... +|+...|+.++|+........+.+-.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 99999999999999988 99999999999997655444554444
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.54 E-value=0.099 Score=61.21 Aligned_cols=241 Identities=10% Similarity=0.097 Sum_probs=134.8
Q ss_pred EEEEEe-CCeEEEEECCCCceeeeecCCCC----CeeE-EEEecCCCcEEEEEe------cCCcEEEEEcccceeeeeec
Q 001258 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPP----AATF-LAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 832 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~----~i~~-l~~s~~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.++.++ |+.|.-+|..+++.+........ .+++ -.+. ++. ++++. .+|.|+-+|..+|+.+-.+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 444444 89999999999998866542211 1221 1121 343 44443 26899999999998775542
Q ss_pred ccc-------------------------------cCeE-EEEEcCCCCEEEEEeCC-----C-----------cEEEEeC
Q 001258 900 GHS-------------------------------KRIT-GLAFSHALNVLVSSGAD-----S-----------QLCVWSS 931 (1113)
Q Consensus 900 ~h~-------------------------------~~V~-~l~~s~d~~~L~s~s~D-----~-----------~v~iwd~ 931 (1113)
.-. ..++ .+++.+...+|..+... + .|.--|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 210 1111 23555555555544421 2 4666777
Q ss_pred CCCccccccccccCCCCCCCC--CCCceEEEccCCc---EEEE-EcCCeEEEEeCCccceeec--------ccc--CCCC
Q 001258 932 DGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQI---HFLV-VHETQLAIFETTKLECVKQ--------WVP--RESS 995 (1113)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~spdg~---~l~~-~~d~~v~v~d~~~~~~~~~--------~~~--~~h~ 995 (1113)
++++..- .+...+.+..... ....-+.+..+|+ .++. ..+|.+.++|..+|+.+.. +.. ....
T Consensus 279 ~TG~~~W-~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 279 DTGKIKW-HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred ccCCEEE-eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 7776542 2222222221111 1222233335776 4444 5889999999999998622 210 0000
Q ss_pred -----------------------------CCeeEEEECCCCCEEEEEeCC------------------------------
Q 001258 996 -----------------------------APITHATFSCDSQLVYACFLD------------------------------ 1016 (1113)
Q Consensus 996 -----------------------------~~v~~l~~s~dg~~l~s~~~D------------------------------ 1016 (1113)
..-..++++|+..+++....+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 001236777777666544433
Q ss_pred ---CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccCCC
Q 001258 1017 ---ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1087 (1113)
Q Consensus 1017 ---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1087 (1113)
|.|.=+|+.+++..-+....... ..+ .+.. .+.+++.++.||.++.+|.++||..|+..-
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~-------~~~-~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPL-------WGG-VLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCC-------CCc-ceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 45777888888887765422110 111 1221 356788888899999999999998776633
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.24 Score=56.06 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=77.3
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-c
Q 001258 825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 902 (1113)
Q Consensus 825 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~ 902 (1113)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| +++++|.-..+|.+.|.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555544444 56676555433211 22 245799999999 8999999999999999886655566555443 3
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCc
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~ 982 (1113)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..+||+.-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455667775443222222 22344333211 234444455544445444577776665
Q ss_pred cceeecc
Q 001258 983 LECVKQW 989 (1113)
Q Consensus 983 ~~~~~~~ 989 (1113)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 5554443
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.48 E-value=4.4e-05 Score=83.71 Aligned_cols=159 Identities=14% Similarity=0.223 Sum_probs=105.5
Q ss_pred CCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCe
Q 001258 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1113)
....+.|++++-+.+ -+++.|..+|.|.+-.+....-- ..++..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 445677777765443 58999999999999887543211 1224567888999999999 7788
Q ss_pred EEEEe----CCCeEEEEEccCC--ceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEee
Q 001258 435 FGVAY----SRHIVQIYSYHGG--DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 506 (1113)
Q Consensus 435 las~~----~d~~i~iwd~~~~--~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~ 506 (1113)
||.|- .|..+.|||+.++ ..... ..+. +-.....+++|..+.+ ++.+|...+.++++|++.. .....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 3667999999886 21111 1122 2445677999998888 7888888889999998732 111222
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEE
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 539 (1113)
.+..+..+.+.|- .+.++++-. ||.|.+||
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeecc
Confidence 1223333444442 224666655 99999999
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.12 Score=59.27 Aligned_cols=246 Identities=13% Similarity=0.124 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+...++||||++++++-+..| +|+|.|+++|+.+.. .+ .. ..-..+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 346789999998666655555 499999999977653 11 11 0122399999998877
Q ss_pred EEeCC-----------CeEEEEEccCCceeeeeeeeecccCC--eeEEEEcCCCCeeEEEEecC-C-CcEEEEeCCCC--
Q 001258 437 VAYSR-----------HIVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-- 499 (1113)
Q Consensus 437 s~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~~~~~~~l~s~s~-d-~~i~iwd~~~~-- 499 (1113)
....+ ..|..|++.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 66433 237788887764321 1134443333 67889999999633333332 2 35777887764
Q ss_pred --ceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccCCCeEEec
Q 001258 500 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 500 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
.....+..+...+....-+. .+ .+++.... .+.|...++..... ...+..+...
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---------------- 326 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---------------- 326 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----------------
T ss_pred CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----------------
Confidence 23334433333443322222 22 33333222 34565566655442 1122222111
Q ss_pred cccCceeEEEecCCCCEEEEE-ecC--CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC----CCcEEE
Q 001258 572 FRKRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI 644 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i 644 (1113)
.....+...+.+|+.. ..+ ..|+++++..+.....+.... ...|..+...+++..+..... -+++..
T Consensus 327 -----~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 327 -----VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR 400 (414)
T ss_dssp -----EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred -----eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 1111222223334443 233 358889988444444444432 223455555555554433221 246777
Q ss_pred EEcCCCc
Q 001258 645 LATSDGI 651 (1113)
Q Consensus 645 wd~~~~~ 651 (1113)
||+.+++
T Consensus 401 ~d~~t~~ 407 (414)
T PF02897_consen 401 YDLATGE 407 (414)
T ss_dssp EETTTTC
T ss_pred EECCCCC
Confidence 8888773
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0094 Score=66.94 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=103.1
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecC---CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
-...+..-+|+|+++.+....-.. ..+.++++++++.....+ +.+ .-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g---~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNG---NNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCC---ccCCccCCCCCC
Confidence 556778889999999744443222 359999999887654321 222 344579999999
Q ss_pred eEEEEe-CCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCceeeEeecc
Q 001258 434 LFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 434 ~las~~-~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h 508 (1113)
+||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++.+.+..|. |.+.|++.+.. ..+...
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 998764 4554 6666777766322 3333333346789999997 3444555555 55556555544 333222
Q ss_pred CcCEEEEeeeecCCceEEEEEec-CCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 509 EAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
.+.-..-.| ++||.+++..+. +|. |.+.|+.+...... -........-.+.++|+.
T Consensus 325 ~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt~~~~~e~ps~~~ng~~ 383 (425)
T COG0823 325 GGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LTSTYLNESPSWAPNGRM 383 (425)
T ss_pred CCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCcEEE-ccccccCCCCCcCCCCce
Confidence 221112333 456677766664 344 55555555443221 122222334455666653
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.16 Score=57.06 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=155.4
Q ss_pred CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
....+++.+++..+.+.. .+.+...+................-..+++++.+.+..+....+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 456688888886666554 334555555421111111211134567788884444666666778999999887766655
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d 972 (1113)
..--. ....++++++++.+..+.. ++++.+.|-.+...... ...+.. ...++++|+|..+++. .+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecCC
Confidence 43222 5678999999987776665 57787887777544322 222322 2789999999988874 58
Q ss_pred CeEEEEeCCccceeecccc---CCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258 973 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
+.+.+.|..+....+ ... -.-......+.+++||.++++.... +.+.+.|..++.....-.... ..
T Consensus 182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-------~~ 253 (381)
T COG3391 182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-------SG 253 (381)
T ss_pred CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-------cC
Confidence 899999987776653 110 0114456789999999987766554 589999999988876522111 11
Q ss_pred ccceEEEEeCCCCCEEEEEeC-CCcEEEEeccCCC
Q 001258 1047 VHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1080 (1113)
Q Consensus 1047 v~~i~~~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~ 1080 (1113)
.+..+...| +|..+.+... .+.+.+-|-.+..
T Consensus 254 -~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 254 -APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred -CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 233477778 6677666533 4788888877766
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.29 E-value=0.12 Score=55.53 Aligned_cols=233 Identities=11% Similarity=0.132 Sum_probs=131.0
Q ss_pred CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCe
Q 001258 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 840 (1113)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~ 840 (1113)
..++.|+.|+++| +.+++.... ..... . .....|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i---~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I---LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E---eecceEEEEEEecccCEEEEEcCCc
Confidence 4567789998888 788776210 00000 0 0334489999999999999999999
Q ss_pred EEEEECCCCceeeee--------------cCCCCCeeEEE--EecCCCcEEEEEecCCcEEEEEcccc-----eeeeeec
Q 001258 841 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 899 (1113)
Q Consensus 841 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~ 899 (1113)
+.++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11122344444 1122345555554 458888887652 3445554
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC------CCCCCCCceEEEccCCcEEEEEcCC
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET 973 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~spdg~~l~~~~d~ 973 (1113)
-.+.+.+++|. ++.++.+..++ ..+.|+.++..... ....... .....++..+. -+++.+|++ .+.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~-~~~ 208 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLC-YDN 208 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEE-eCCceEEEE-ecc
Confidence 34778999998 56777776555 88899987544221 1111100 00001222222 234555554 333
Q ss_pred eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
.-...|. .|+..+.... .-...+.++++ ...||++.+. +.|.||++.+++++..+.
T Consensus 209 ~g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred eEEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3333343 3433221000 01335566666 3447777665 559999999999987765
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.24 E-value=0.018 Score=67.77 Aligned_cols=188 Identities=12% Similarity=0.057 Sum_probs=105.0
Q ss_pred CCccEEEEecCCCEEEEEe-------CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--------
Q 001258 819 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 881 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------- 881 (1113)
..+.+.+++|||+.++... |+ .|.+++... .. +.+... ...+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3678899999999887654 32 466666532 22 333222 2378889999 77766665422
Q ss_pred ----CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCccccccccccCCCCCCCCCC
Q 001258 882 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 954 (1113)
Q Consensus 882 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1113)
+.+.+.++..++... ...+.|..+.|||||..++... ++.|++ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444433322 2346799999999999988766 467777 343444311111111222111 23
Q ss_pred CceEEEccCCcEEEEEcCC--eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258 955 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus 955 i~~~~~spdg~~l~~~~d~--~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
+..+.|..++.+++...+. .+...++.... ...+.......++.+++=+++ -|+.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5788999999976554333 34444444222 222121123556777776653 355555566433
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.25 Score=49.89 Aligned_cols=208 Identities=13% Similarity=0.060 Sum_probs=124.0
Q ss_pred cEEEEecCCCE-EEEEe-CCe-EEEEECCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEecC-----CcEEEEEccc
Q 001258 822 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 891 (1113)
Q Consensus 822 ~~l~~s~~~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~ 891 (1113)
..++++|.-.. ++.+. -|+ ..+||..+.+.+.++...... --.=.||| ||.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 45777776554 44444 354 778999888777665433322 12236999 89888765433 6899999875
Q ss_pred c-eeeeeecccccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEeCCCCccccccccccCCCCCCCC
Q 001258 892 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 892 ~-~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1113)
+ +.+.++..|.-.--.+.|.+||+.|+.+... -.+.+.|-.+++......+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 3 5667888888777889999999999987431 0123333333333222211111111
Q ss_pred CCCceEEEccCCcEEEEE-cCC-----eEEEEeCCccceeeccccC-----CCCCCeeEEEECCCCCEEEEEeCC-CcEE
Q 001258 953 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1020 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~~-~d~-----~v~v~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~D-g~v~ 1020 (1113)
.++..++..+||..++.+ ..| --.+=-...++.+..+... .-...|-+++...+..+++..+-. +...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 367888888898877763 222 1111111222222222110 114467888888777776665544 5578
Q ss_pred EEecCCCceeeecC
Q 001258 1021 VFSAANLKLRCRIN 1034 (1113)
Q Consensus 1021 vwd~~~~~~~~~~~ 1034 (1113)
+||.++|..+..-.
T Consensus 306 i~da~tG~vv~~a~ 319 (366)
T COG3490 306 IWDAATGAVVSEAA 319 (366)
T ss_pred EEEcCCCcEEeccc
Confidence 89999999885543
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.12 E-value=0.013 Score=69.67 Aligned_cols=148 Identities=10% Similarity=0.077 Sum_probs=95.2
Q ss_pred CCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC-EEEEeeeecC-----CceEEEEEecCCcEEEEEcCCCCCeee-e
Q 001258 477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHKE-----NIQFIFSTALDGKIKAWLYDNLGSRVD-Y 549 (1113)
Q Consensus 477 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~-~ 549 (1113)
.+.++|........|+--|++.|+.+..+..|... |..++ +.. +....+.|-.++.+..||.+-...... -
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 33334555556788999999999999999887755 77766 321 123567788889999999986431111 0
Q ss_pred eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258 550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1113)
Q Consensus 550 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 629 (1113)
..+. ......+.+++-+.+| ++++|+.+|.||+||--..+....+.+- ..+|..+..+.|
T Consensus 570 ~~k~-----------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l--G~pI~~iDvt~D 629 (794)
T PF08553_consen 570 QSKQ-----------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL--GDPIIGIDVTAD 629 (794)
T ss_pred cccc-----------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC--CCCeeEEEecCC
Confidence 0100 0111233333333333 3999999999999995333323333333 358999999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001258 630 GCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 630 ~~~l~~~~~dg~i~iwd~ 647 (1113)
|+++++.+. ..+.+++.
T Consensus 630 GkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 630 GKWILATCK-TYLLLIDT 646 (794)
T ss_pred CcEEEEeec-ceEEEEEE
Confidence 999887665 57777765
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.11 E-value=0.084 Score=62.17 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=87.8
Q ss_pred CCeeEEEEecCCCcEEEEEe------cCC--cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC--------
Q 001258 860 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-------- 923 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-------- 923 (1113)
..+...+++| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 777766554 244 45555542 2222223332 37888999999988877533
Q ss_pred ----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE---EeCCccceeec-----ccc
Q 001258 924 ----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVP 991 (1113)
Q Consensus 924 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v---~d~~~~~~~~~-----~~~ 991 (1113)
+.+.+.+++.++... .....|..+.|||||+.++...+++|.+ -....|. ... +.
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~- 492 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG- 492 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-
Confidence 122222333322110 0114689999999999999966788877 4544554 111 11
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 992 RESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
.+-...+.++.|..++.++ ++..++...+|.+
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 1113346889999999965 5555555555554
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0021 Score=71.12 Aligned_cols=95 Identities=17% Similarity=0.416 Sum_probs=72.6
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE-EEEEcCCCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l 435 (1113)
-...|..+.|+|.-. |+|++..+|.|.+..+. .++ +|+ +.-|...++ +++|.|||+.|
T Consensus 19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEE
Confidence 345778999999998 79999999999998877 333 333 233444565 99999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEc
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 474 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 474 (1113)
|+|-.||+|++.|+.++..+... ...-...|.++-|.
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 99999999999999998866531 12234567777775
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.2 Score=53.65 Aligned_cols=229 Identities=14% Similarity=0.075 Sum_probs=131.3
Q ss_pred EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001258 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1113)
Q Consensus 365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 444 (1113)
.|.+++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .-+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HGV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--ccc
Confidence 4778888777777778999999998775432 11 122334444444555555553 236
Q ss_pred EEEEccCCceeeeeeeee-cc-cCCeeEEEEcCCCCeeEEEEecCC----------CcEEEEeCC-CCceeeEeeccCcC
Q 001258 445 QIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGDD----------KTIKVWDAT-NGAKQYIFEGHEAP 511 (1113)
Q Consensus 445 ~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~~~~~~~l~s~s~d----------~~i~iwd~~-~~~~~~~~~~h~~~ 511 (1113)
.+++.+++..+....... +. ...-+.+...|+|. +..+... ..-.+|-+. .+..++.+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 777776665422222221 22 23567889999998 3333222 112455544 57777777766666
Q ss_pred EEEEeeeecCCceEEEEE-ecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 512 VYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
-+.++|+++. +.++.+ +..+.|.-|++..... ..... .. ........+..-.++.+.+|++.+
T Consensus 165 ~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g----~~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 165 PNGLAFSPDG--KTLYVADTPANRIHRYDLDPATG----PIGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred cCceEECCCC--CEEEEEeCCCCeEEEEecCcccC----ccCCc-ce---------EEEccCCCCCCCceEEeCCCCEEE
Confidence 7888987655 455444 4567888887763100 00000 00 111111122333456667777665
Q ss_pred EEecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258 591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1113)
Q Consensus 591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 638 (1113)
++..+| .|.+|+.+ ++.+..+..+. ..+++++|-- +.+.|++.+.
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 444443 99999998 99998888763 3578888864 4555554443
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.15 Score=54.67 Aligned_cols=221 Identities=12% Similarity=0.047 Sum_probs=124.6
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec--
Q 001258 824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-- 899 (1113)
Q Consensus 824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-- 899 (1113)
..|.++...|+-.. .+.|.-|+..+++. ..+. ....+.++..-. .+..|+++. ..+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 35667777666665 68899999876543 2333 223334444433 333444332 346667766554422221
Q ss_pred --c-cccCeEEEEEcCCCCEEEEEeC-----C----CcEEEEeCCC-CccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 900 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 900 --~-h~~~V~~l~~s~d~~~L~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
+ -..+.+.+...|+|.+.++... . ..-.+|-++. +.. .....++. .....++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence 1 1245677888999988886554 1 1123554442 111 11111111 13478999999988
Q ss_pred EEEE--cCCeEEEEeCCc--cceee---ccccCCCCCCeeEEEECCCCCEEEEEeCCC-cEEEEecCCCceeeecCCCcc
Q 001258 967 FLVV--HETQLAIFETTK--LECVK---QWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus 967 l~~~--~d~~v~v~d~~~--~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
++.+ ..+.|.-|++.. +.... ......+.+..-.++...+|.+-+++..+| .|.+|+.+ |+++..+..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 8875 457788777652 22111 111122356667788888898876555554 89999998 89988887332
Q ss_pred cCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
..++ +++|--.+.+.|...+.
T Consensus 255 ------~~~t--~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 ------KRPT--NPAFGGPDLNTLYITSA 275 (307)
T ss_pred ------CCCc--cceEeCCCcCEEEEEec
Confidence 2233 36665444565544443
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.06 E-value=0.037 Score=65.86 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=97.7
Q ss_pred CCcEEEEE-ecCCcEEEEEcccceeeeeecccccC-eEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258 871 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1113)
Q Consensus 871 d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1113)
+.++|..- .....|+-.|+..|+.+..+..|... |..++-.. +...-+.|=.+..+..||.+-... .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44454443 35578999999999999999988754 55554321 122344566677799999875321 1111
Q ss_pred cCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 944 ~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
.............+++-+.+|...+.+.+|.||+||.. |..-++..+ +-+.+|..|..+.||++|++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 00111112235678888888877777899999999954 333333332 4578999999999999988766 67777877
Q ss_pred c
Q 001258 1024 A 1024 (1113)
Q Consensus 1024 ~ 1024 (1113)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.19 Score=55.20 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=119.0
Q ss_pred CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----CCeEEEEeC----------CCeEEE
Q 001258 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS----------RHIVQI 446 (1113)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~----------d~~i~i 446 (1113)
..|++.|..+.+.+....+.- ..+-..+..+.|..+ ..+|++|.. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 357888888877776544321 111112334444433 567887743 288999
Q ss_pred EEccCC----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEee-ccCcCEEEEeeeec
Q 001258 447 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK 520 (1113)
Q Consensus 447 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~ 520 (1113)
+++... ..++.... ....++|++++-- ++. ++++. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 23433322 2457889999876 343 33433 4789999998877 433222 223356666532
Q ss_pred CCceEEEEEecCCcEEEEEcCCCCC-eeee--eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258 521 ENIQFIFSTALDGKIKAWLYDNLGS-RVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1113)
Q Consensus 521 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~--~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1113)
. ++++.|.....+.++.++.... ...+ ......+.++. +-++++.++++..+|.
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~---------------------~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAE---------------------FLVDEDTIIVGDKDGN 195 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEE---------------------EE-SSSEEEEEETTSE
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEE---------------------EecCCcEEEEEcCCCe
Confidence 3 4899998888888876654222 1111 11222333333 3323346888899999
Q ss_pred EEEEECCC-------C--ceEEEEccCCCCCCcCeE---EECC--CC------CEEEEEECCCcEEEE
Q 001258 598 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKIL 645 (1113)
Q Consensus 598 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iw 645 (1113)
+.++.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99887752 2 22222222222 245555 4455 12 248888899998854
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.00 E-value=0.13 Score=56.91 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=62.5
Q ss_pred EEEEcCCCCeEEEEeCCCeEEE---EEccC-C--ce---eeeeeeeeccc-CCeeEEEEcCC---C------CeeEEEEe
Q 001258 425 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 485 (1113)
Q Consensus 425 ~l~~spdg~~las~~~d~~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~~---~------~~~~l~s~ 485 (1113)
.++.+|++++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.+-|- . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999988877666 64421 1 11 11111222111 46777766442 1 12389999
Q ss_pred cCCCcEEEEeCCCCceeeEeeccCcCEEEEeeee
Q 001258 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1113)
Q Consensus 486 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1113)
..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 68888877667899999887543
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.96 E-value=0.32 Score=53.99 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=56.8
Q ss_pred EEEEecCCCEEEEEeCCeEEE----EECC-CC----ceeee----ecCCC-CCeeEEEEecC----------CCcEEEEE
Q 001258 823 CFALSKNDSYVMSASGGKISL----FNMM-TF----KTMAT----FMPPP-PAATFLAFHPQ----------DNNIIAIG 878 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~sdg~i~v----wd~~-~~----~~~~~----~~~~~-~~i~~l~~s~~----------d~~~la~g 878 (1113)
.++.+|++..||.+....+.+ |+.. .+ ..... +.... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 578899999999998555333 4331 11 11111 12111 45777665442 46799999
Q ss_pred ecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1113)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1113)
..+|.|++|.- +|.++..-.-|.++|..|.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 566665555577888877764
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.94 E-value=0.2 Score=57.52 Aligned_cols=239 Identities=11% Similarity=0.080 Sum_probs=126.3
Q ss_pred ccEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEecC-----------C
Q 001258 821 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S 882 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~la~g~~d-----------g 882 (1113)
+....+||||+++|.+- +| +|+++|+.+++.+... .. .....+.|.+ +++.|+....+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999999765432 21 1123499999 66655554422 2
Q ss_pred cEEEEEcccceee--eeecccccC--eEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCc--cccccccccCCCCCCCC
Q 001258 883 SIQIYNVRVDEVK--SKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 883 ~v~iwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~L~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 952 (1113)
.|+.|++.+...- ..+...... ...+..++|+++|+..+.. ..+.+.++..+. ......+.....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~----- 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED----- 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-----
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-----
Confidence 4788888765322 333333332 5688899999998754332 346777777641 111122211111
Q ss_pred CCCceEEEccCCcEEEEE----cCCeEEEEeCCccce---eeccccCCCCC--CeeEEEECCCCCE-EEEEeCCCc--EE
Q 001258 953 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDAT--VC 1020 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~-l~s~~~Dg~--v~ 1020 (1113)
.+....-+..+.+++.+ .++.|...++.+... ...+. .|.. .+..+.. .+.+ ++....++. |+
T Consensus 278 -~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 -GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp -S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred -ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 22333333344444443 346777788877663 21232 3333 4555554 3444 444555544 88
Q ss_pred EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC---CcEEEEeccCCC
Q 001258 1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1080 (1113)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1080 (1113)
++++..+.....+.... .+.|.. +...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~~p~------~g~v~~--~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE------AGSVSG--VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEESSS------SSEEEE--EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeecCCc------ceEEec--cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 89998444444443111 122332 33334333344444332 578899999988
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.91 E-value=0.28 Score=52.69 Aligned_cols=225 Identities=13% Similarity=0.127 Sum_probs=123.4
Q ss_pred ecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee---------
Q 001258 827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--------- 897 (1113)
Q Consensus 827 s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~--------- 897 (1113)
...++.|+.|.++.|.++++.......... +...|..+...+ +-+.|++-+ |+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 346788999985449999993322222222 223399999998 555555443 59999999876433321
Q ss_pred -----ecccccCeEEEE--EcCC-CCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 898 -----LKGHSKRITGLA--FSHA-LNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 898 -----l~~h~~~V~~l~--~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
.......+...+ -... ...|+.+ ..++|.+|......... .......- +..+..++|. +..++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEE
Confidence 111223344444 1123 3445544 45589998887642211 11111111 1356888888 66777
Q ss_pred EEcCCeEEEEeCCccceeeccccCCC----------CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceee--ecCCC
Q 001258 969 VVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPS 1036 (1113)
Q Consensus 969 ~~~d~~v~v~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~--~~~~~ 1036 (1113)
++..+...+.|+.++.....+..... ..++..+... ++.+|++- |..-..-|. .|+... .+.
T Consensus 153 v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-- 226 (275)
T PF00780_consen 153 VGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-- 226 (275)
T ss_pred EEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE--
Confidence 77788899999997766544432111 1234444443 46777653 333333343 343332 111
Q ss_pred cccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1037 AYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1037 ~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
-...+. .+.+.. .+|+..+. +.|.||++.+++
T Consensus 227 ------W~~~p~--~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ------WSSAPQ--SVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ------cCCchh--EEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 112222 355543 36666554 559999999998
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.2 Score=50.53 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=117.8
Q ss_pred eeEEEEecCCCcEEEEEecCCc-EEEEEcccceeeeeecccccC--eEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 001258 862 ATFLAFHPQDNNIIAIGMDDSS-IQIYNVRVDEVKSKLKGHSKR--ITGLAFSHALNVLVSSGAD-----SQLCVWSSDG 933 (1113)
Q Consensus 862 i~~l~~s~~d~~~la~g~~dg~-v~iwd~~~~~~~~~l~~h~~~--V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~ 933 (1113)
...++|+|.-.+-++.+-.-|+ ..++|....+....+...+++ .-.=.|||||.+|...-.| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456666644555555655553 457787776555444322111 1123699999999866443 7799999885
Q ss_pred CccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC-------------------CeEEEEeCCccceeeccccC--
Q 001258 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-------------------TQLAIFETTKLECVKQWVPR-- 992 (1113)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d-------------------~~v~v~d~~~~~~~~~~~~~-- 992 (1113)
+-.... ....+. .....+.+.+||+.+++... -.+.+.|..+|+.+.+....
T Consensus 150 ~fqrvg----E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 150 GFQRVG----EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred ccceec----ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 322111 111111 24478899999999998422 14666777788877665543
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 993 ESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
-+...|..++..+||+.++.+-..|- --|=-...++.+.-+...+.....-..-|-+ ++-+-.++-..+|.-.
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs--iA~n~~~glV~lTSP~ 300 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS--IAANRRDGLVALTSPR 300 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh--eeecccCCeEEEecCC
Confidence 45667889999999987765543221 1111112233332222111111111222333 4444435544555555
Q ss_pred CCcEEEEeccCCC
Q 001258 1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus 1068 Dg~v~vW~~~~~~ 1080 (1113)
-+...+||..+|+
T Consensus 301 GN~~vi~da~tG~ 313 (366)
T COG3490 301 GNRAVIWDAATGA 313 (366)
T ss_pred CCeEEEEEcCCCc
Confidence 6678899999998
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0049 Score=68.40 Aligned_cols=94 Identities=10% Similarity=0.128 Sum_probs=76.8
Q ss_pred CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001258 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937 (1113)
Q Consensus 859 ~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~ 937 (1113)
...+..+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+.++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34578899999 88899999999999999988 777888887888888 9999999999999999999999999997765
Q ss_pred cccccccCCCCCCCCCCCceEEEc
Q 001258 938 KNRFLQIPTGRTPTAQSDTRVQFH 961 (1113)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~~~~s 961 (1113)
........ ..|.++-|+
T Consensus 98 ~~~~~s~e-------~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVE-------TDISKGIWD 114 (665)
T ss_pred eccccccc-------cchheeecc
Confidence 44322211 245666665
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.83 E-value=0.003 Score=43.35 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.6
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
++....+..|...|+++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 384
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.77 E-value=1.3 Score=49.38 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=150.0
Q ss_pred CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-----CCCEEEEEe
Q 001258 763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 837 (1113)
Q Consensus 763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~s 837 (1113)
...|++|+..|.++||+.....+.+....+... -..+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---------------------l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---------------------LKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe---------------------cCCcEEEEEeccccCCCCcceEEEec
Confidence 457899999999999988654444332221111 244555554331 334566656
Q ss_pred CCeEEEEECCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCcEEEEEecCCcEEEEEcccceeeeeecccc
Q 001258 838 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 902 (1113)
Q Consensus 838 dg~i~vwd~~~--~~-------~~~~~~~~~~--~i~~l~~s~~----d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~ 902 (1113)
-..+.||.+.. +. .+.....|.- ....+++-|- +..++.+-+-||.+.+|+-+.......+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77777877631 11 1111111221 1222333221 236889999999999999776544444443 3
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc-------cccCCCCC----------CCCCCCceEEEccCCc
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRT----------PTAQSDTRVQFHQDQI 965 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~-------~~~~~~~~----------~~~~~i~~~~~spdg~ 965 (1113)
--...++|.+.-..+++++.+..|.-|....-....... .....+.. ...-.+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 334457888888899999999889888753210000000 00000000 0001122233333334
Q ss_pred EEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEE-E----CCCC---CEEEEEeCCCcEEEEecCCCceeeecCCCc
Q 001258 966 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDS---QLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus 966 ~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~-~----s~dg---~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
.+++-.++.+.+.+.. |........+. ...|++ | ..++ ..++.++.++++.||.=.+..--+++.
T Consensus 255 ~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred eEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 4555456666666653 44433333222 222222 1 1222 248888999999999865544443331
Q ss_pred ccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1038 YLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1038 ~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
...-.+.++..+.-...|++-+.+|.|.+-=+-|.-
T Consensus 328 -------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 112233444444445589999999999987766644
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.026 Score=61.52 Aligned_cols=206 Identities=12% Similarity=0.143 Sum_probs=115.8
Q ss_pred CcceEEEEEcC-CCCeEEEEeCC------CeEEEEEccCCceeee----eeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258 420 GVSVNRVIWSP-DGSLFGVAYSR------HIVQIYSYHGGDEVRQ----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1113)
Q Consensus 420 ~~~V~~l~~sp-dg~~las~~~d------~~i~iwd~~~~~~~~~----~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d 488 (1113)
.+.|.++++.. +.++|+.+... ..|-|+.-..|-+++. .....+|+-.-.-+-.......+++.++...
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~ 355 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ 355 (644)
T ss_pred hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence 35577777775 66677776542 2333443322222110 0011122211111112222334467777778
Q ss_pred CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEE-----EEEecCCcEEEEEcCCCCC-eeee-eCCCCceEEEEE
Q 001258 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGS-RVDY-EAPGRWCTTMAY 561 (1113)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~ 561 (1113)
..++--|++.|+.+..+.-|.. |.-+.+.+...+..+ +.|-.|..|.-||.+-... .... ..+. +
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-------y 427 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-------Y 427 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc-------c
Confidence 8899999999999999987766 666666565544433 3455688899999874332 1111 0000 0
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
+ ....+.|.+-..+ .++++|+.+|.|++||--..+....+.+-+ .+|..+..+.+|+++++.+. ..
T Consensus 428 ~----------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~-ty 493 (644)
T KOG2395|consen 428 S----------TKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCK-TY 493 (644)
T ss_pred c----------cccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecc-cE
Confidence 0 0112222222222 259999999999999973333333444443 47999999999998876654 56
Q ss_pred EEEEEc
Q 001258 642 IKILAT 647 (1113)
Q Consensus 642 i~iwd~ 647 (1113)
+.+.++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 666654
No 386
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.59 E-value=0.08 Score=58.24 Aligned_cols=179 Identities=12% Similarity=0.169 Sum_probs=101.1
Q ss_pred CCEEEEEe---C--------CeEEEEECCCC----ceeeee--cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 830 DSYVMSAS---G--------GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 830 ~~~l~~~s---d--------g~i~vwd~~~~----~~~~~~--~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
..++++|. . |.|.++++... ..+..+ ....++|++++-- +++ |+++. .+.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 46777774 1 77999999873 122211 2235678888776 344 44443 578999999887
Q ss_pred e-eeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 893 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 893 ~-~~~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
+ ....-.- ....++++... +++++.|+....+.++.++..... ......... ...++++.|-+|+..++++
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d~~--~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNK---LILVARDYQ--PRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE----EEEEEEESS---BEEEEEEEE-SSSEEEEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCE---EEEEEecCC--CccEEEEEEecCCcEEEEE
Confidence 7 4432221 22356666554 569999998888888866542110 111111111 1357788888666555554
Q ss_pred -cCCeEEEEeCCc-------c----ceeeccccCCCCCCeeEE---EECCC--CC------EEEEEeCCCcEEEE
Q 001258 971 -HETQLAIFETTK-------L----ECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1022 (1113)
Q Consensus 971 -~d~~v~v~d~~~-------~----~~~~~~~~~~h~~~v~~l---~~s~d--g~------~l~s~~~Dg~v~vw 1022 (1113)
.+|.+.++.... + .....+. ....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 789999887752 1 1222332 25677777 65552 22 37788889998843
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.058 Score=64.05 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=71.0
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~ 452 (1113)
+++.|+..|.|...|+...-... .| -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 58889989999988886531100 00 1123569999999999999999999999999999998
Q ss_pred ceeeeeeeeecccCC---eeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 453 ~~~~~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
+.++. +..|..+ |..+.+..++. .++++...|. +|.+.
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence 87763 4444443 44445555555 5778777776 66643
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.50 E-value=3.3 Score=50.53 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=114.5
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccC------CeeEEEEc----------------CCCCeeEEEEecCCC
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFS----------------HPNKQLCVITCGDDK 489 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~------~V~~v~~s----------------~~~~~~~l~s~s~d~ 489 (1113)
+..|..++.++.|.-.|..+|+.+-.... ..... ....+++- ..+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 55666666777788888888876653211 10000 01112221 1233 467788899
Q ss_pred cEEEEeCCCCceeeEeeccCcCEE-------------EEeeeecCCceEEEEEec----------CCcEEEEEcCCCCCe
Q 001258 490 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR 546 (1113)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 546 (1113)
.+.-.|.++|+.+..+.. .+.|. .+.-.|.-.+..++.|+. +|.|+-+|.++++.+
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999876632 22211 000001101135666643 688999999999988
Q ss_pred eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe------------------cCCcEEEEECCCCce
Q 001258 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------------------DDFSIKFWDMDSVQL 608 (1113)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~ 608 (1113)
..+.......... .+.+. .+.......-...++++....++.+. ..+.|.-.|.++|+.
T Consensus 350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 8765321111100 01121 12111111222334444433333311 245677788899988
Q ss_pred EEEEccCCCC-------CCcCeEEECC-CCC---EEEEEECCCcEEEEEcCCCcc
Q 001258 609 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 609 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
...++...|. ....-+.+.. +|+ .++.++.+|.+.++|..+|+.
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 8777642221 0111122322 553 799999999999999999943
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.48 E-value=0.29 Score=54.69 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=90.2
Q ss_pred CCeeEEEEecCCCcEEEEEe--cCCcEEEEEcccceeeeeecccccCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001258 860 PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~L~s~s~D~~v~iwd~~~ 933 (1113)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.+++|.|- ...|...-.-..|.+|-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 344444432 2334444 45899999985 33455566677899999874
Q ss_pred Ccccccccc--ccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEE
Q 001258 934 WEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus 934 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1113)
........+ +.-+-..+-+.-...+.|+|....|++ ..+..-.++++......-.... ...+.|.|.||..||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 322222221 111111111123367899999998888 4333333445433322111111 226789999999999987
Q ss_pred EEEe-CCCcEEEEecCCC
Q 001258 1011 YACF-LDATVCVFSAANL 1027 (1113)
Q Consensus 1011 ~s~~-~Dg~v~vwd~~~~ 1027 (1113)
+++- ..=.-++||-...
T Consensus 171 VVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEeCCeEEEEEecCchh
Confidence 6553 3344789986544
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.33 E-value=1.7 Score=47.82 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----CCeE
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF 435 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 435 (1113)
..++|+|.|||+ +++ +...|.|.+++ ..+.... .+ -++ ..+..........++|+|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 468999999998 455 46699999999 4444311 01 000 0134455668899999994 4444
Q ss_pred EEEeCC--------CeEEEEEccCC-cee---eeee-eeec---ccCCeeEEEEcCCCCeeEEEEec
Q 001258 436 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EIDA---HVGGVNDIAFSHPNKQLCVITCG 486 (1113)
Q Consensus 436 as~~~d--------~~i~iwd~~~~-~~~---~~~~-~l~~---h~~~V~~v~~s~~~~~~~l~s~s 486 (1113)
++.+.. ..|.-|.+..+ ..+ +.+. .+.. ....-..|+|.|||. +++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 443321 24555555544 111 1111 1111 233456799999995 3544544
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.055 Score=64.24 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
.+..++.|+..|.|-..|+.+. +++...-..-.++|++++|+.+|+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999888764 221111123456999999999999 788899999999999999999999998888
Q ss_pred CEEEEeeeec-CCceEEEEEecCCcEEEEEcC
Q 001258 511 PVYSVCPHHK-ENIQFIFSTALDGKIKAWLYD 541 (1113)
Q Consensus 511 ~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~ 541 (1113)
+.+.+-++.. ..+..++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 8777654332 23346788777776 56543
No 392
>PRK10115 protease 2; Provisional
Probab=96.27 E-value=2.2 Score=52.04 Aligned_cols=196 Identities=9% Similarity=0.019 Sum_probs=101.4
Q ss_pred CCccEEEEecCCCEEEEEeC--C----eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC------CcEEE
Q 001258 819 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI 886 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d------g~v~i 886 (1113)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998863 2 48999998876432221111 14699999 66555544332 36888
Q ss_pred EEcccc--eeeeeecccccCeE-EEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258 887 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 887 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 960 (1113)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+|+....... ...+..... .....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-----~~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRK-----DHEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCC-----CCEEEEE-
Confidence 888877 33333433223333 3344558887665443 456888885331111 111111111 1112222
Q ss_pred ccCCcEEEEEcC----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258 961 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 961 spdg~~l~~~~d----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
+..+.+++.... ..|...++.+......+....-...|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333321 23444455421111222221113478888887 34566677777775555443
No 393
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.27 E-value=0.012 Score=40.21 Aligned_cols=34 Identities=41% Similarity=0.757 Sum_probs=30.9
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
.+..|...|.++.|.+++. ++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGK--YLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCC--EEEEecCCCeEEEcC
Confidence 5678999999999999987 799999999999996
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.21 E-value=0.74 Score=48.28 Aligned_cols=145 Identities=13% Similarity=0.064 Sum_probs=90.0
Q ss_pred CCccEEEEecCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE-cccce
Q 001258 819 EAVPCFALSKNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 893 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd-~~~~~ 893 (1113)
..+.+.+++++++.++... ++ .++++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 44 45555543 3333322 223688889999 687777777777777774 33332
Q ss_pred ee-eeeccc--ccCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccc-c---ccccccCCCCCCCCCCCceEEEccC
Q 001258 894 VK-SKLKGH--SKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ-K---NRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 894 ~~-~~l~~h--~~~V~~l~~s~d~~~L~s~s---~D~~v~iwd~~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
.. ..+... .+.|+++.+||||..++... .++.|.+=-+...... . ......... ....+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 22 112111 12899999999999988665 3567777765543322 1 111111111 1246789999999
Q ss_pred CcEEEEE
Q 001258 964 QIHFLVV 970 (1113)
Q Consensus 964 g~~l~~~ 970 (1113)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.20 E-value=0.29 Score=42.42 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=65.3
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 423 VNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 423 V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
|++|++.. || ..|++|+.|..|+||+-.. .+. ++. ..+.|++++-...++ |+.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 56666655 32 5799999999999998553 333 333 345788888777754 899999999999973
Q ss_pred CceeeEeeccCcCEEEEee-eecCCc-eEEEEEecCCcEE
Q 001258 499 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK 536 (1113)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~-~~~~~~-~~l~s~~~dg~i~ 536 (1113)
...+...+.. ..+.++++ ....+| .-|++|=.+|.|-
T Consensus 71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2233333322 23555543 333333 3577887777663
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.084 Score=57.73 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=96.7
Q ss_pred EEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCccccccccccCC
Q 001258 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV-------LVSSGADSQLCVWSSDGWEKQKNRFLQIPT 946 (1113)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 946 (1113)
+|..+..-..++-.|+..|+.+..+.-|.+ |+-+.+.|+.+. =+.|=.|..|.-||.+-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 344455556788889999999999998877 788888887532 123445777999998743221 122222
Q ss_pred CCCC-CCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 947 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 947 ~~~~-~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
++.- ....-.|.+-..+|..++.+.+|.|++||. .+..-.+..+ +-..+|..+..+.||++|++.+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2211 112345666666776666689999999998 4544444332 5588999999999999988665 666766665
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.017 Score=56.18 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCeE
Q 001258 830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 906 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 906 (1113)
+.-+++|. +|.|.+|..... .....+......|.+..-.-+++.+..+++.||.|+.|++..++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34555665 999999987622 22222222233444444333366789999999999999999999888888887 6666
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001258 907 GLAFSHALNVLVSS--GADSQLCVWSSDG 933 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~--s~D~~v~iwd~~~ 933 (1113)
.+..+..+++++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666677777777 7788888888765
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.14 E-value=0.28 Score=42.54 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=62.8
Q ss_pred EEEEeeee-cCCc-eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 512 VYSVCPHH-KENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 512 v~~~~~~~-~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
|+++++.. +.+| +.|+.|+.|..|++|+-+ +....+. ....+.+++....+ .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~----------------------~F 56 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG----------------------RF 56 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC----------------------EE
Confidence 56666543 2222 579999999999999644 2333322 33445555555444 38
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC---CC-CEEEEEECCCcEE
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DG-CLLAVSTNDNGIK 643 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~ 643 (1113)
+.+-.+|+|-+|+-. ..+...+... .+.++.+.. || .-|++|-.+|.|-
T Consensus 57 ~Y~l~NGTVGvY~~~--~RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 57 AYALANGTVGVYDRS--QRLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEecCCEEEEEeCc--ceeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 888899999999853 3333443322 355665544 22 3688888888774
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.13 E-value=1.1 Score=47.59 Aligned_cols=159 Identities=11% Similarity=0.072 Sum_probs=79.7
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC
Q 001258 856 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGW 934 (1113)
Q Consensus 856 ~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~-~~~ 934 (1113)
......+..+..++ ||++++++..-....-||--...-...-+.-+.+|.++.|+||+.+.+.+ ..|.|+.=+. ...
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 33456788888888 89999888655555567643211112223356889999999998776644 8888887762 111
Q ss_pred ccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccc-cCCCCCCeeEEEECCCCCEEEEE
Q 001258 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
+.-.......... .-.+..++|.+++...+++..+.+. ...+.|+.=..-. ...-...++.+.|.++.+-++.
T Consensus 219 ~~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 1100000111011 1246888999999988888877554 3444444322221 1122556889999876555554
Q ss_pred eCCCcEEEE
Q 001258 1014 FLDATVCVF 1022 (1113)
Q Consensus 1014 ~~Dg~v~vw 1022 (1113)
+.||.+--|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 468876544
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.05 E-value=1.4 Score=45.29 Aligned_cols=185 Identities=8% Similarity=0.111 Sum_probs=112.9
Q ss_pred ccEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 821 VPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
...+.|..+|.++-+.+ - ..|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45678877887777766 3 4699999999987765443222 22344444 45677777789999999999998888
Q ss_pred eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeE
Q 001258 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 975 (1113)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v 975 (1113)
++.- .+.=+.|+ .|++.|+..+....++++|..+.+.... +.+..... ....+..+-+- +|...|-. ....|
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~-pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGR-PVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTE-E---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCE-ECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 8864 45667787 4677777776677799999877554332 22221111 01233445554 56555544 66778
Q ss_pred EEEeCCccceeeccccC----------CC---CCCeeEEEECCCCCEEEEEe
Q 001258 976 AIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 976 ~v~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
...|..+|+++..+... .+ ..-.+.||+.|+...++..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999887654210 01 34578999988776655444
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.93 E-value=0.44 Score=56.53 Aligned_cols=198 Identities=12% Similarity=0.084 Sum_probs=102.9
Q ss_pred CCcEEEEEecC------CcEEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccc
Q 001258 871 DNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 937 (1113)
Q Consensus 871 d~~~la~g~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~ 937 (1113)
++.+.++|+.+ ..+..||..+.. .+..+.........++ -+|+..+.||.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 67788888854 347788877653 2222221111222222 3678888888764 47888887642
Q ss_pred ccccccc-CCCCCCCCCCCceEEEccCCcEEEEE-cC-----------------------CeEEEEeCCccceeeccccC
Q 001258 938 KNRFLQI-PTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------------------TQLAIFETTKLECVKQWVPR 992 (1113)
Q Consensus 938 ~~~~~~~-~~~~~~~~~~i~~~~~spdg~~l~~~-~d-----------------------~~v~v~d~~~~~~~~~~~~~ 992 (1113)
+..... +.... ...+..-+|+..++| .+ ..+..||..+.+....-..
T Consensus 379 -W~~~~~mp~~r~------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m- 450 (557)
T PHA02713 379 -WKMLPDMPIALS------SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF- 450 (557)
T ss_pred -EEECCCCCcccc------cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-
Confidence 221111 11111 111223366666664 32 2477888877655322211
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCC------CcEEEEecCC-CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 993 ESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~~~D------g~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
. ......-+..-+|+..+.|+.+ ..|..||..+ .+-...-. ++.. ... .. ++-. +|.+.++|
T Consensus 451 ~-~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~-r~~-~~--~~~~--~~~iyv~G 519 (557)
T PHA02713 451 W-TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR-LSA-LH--TILH--DNTIMMLH 519 (557)
T ss_pred C-cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc-ccc-ce--eEEE--CCEEEEEe
Confidence 0 1111111223356766677654 2467888887 44332111 1111 111 11 2222 67899999
Q ss_pred eCCC--cEEEEeccCCCccccCCCCCCCCC
Q 001258 1066 LSDG--GVHVFEPLESEGKWGVPPPVDNGS 1093 (1113)
Q Consensus 1066 ~~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1093 (1113)
+.|| ++..+|+.+.+ |..-+|-...+
T Consensus 520 g~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 520 CYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred eecceeehhhcCccccc--ccchhhhcCCc
Confidence 9998 78888888866 77766654433
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.83 E-value=1.5 Score=48.25 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=116.3
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCce---eeee----cCCCCCeeEEEEecC---CCcEEEEEecC--------
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 881 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~la~g~~d-------- 881 (1113)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988877799999999 33332 2222 223456789999982 24444444321
Q ss_pred CcEEEEEcccc-------eee-eeecc---cccCeEEEEEcCCCCEEEEEeCCCc-----------EEEEeCCCC-cccc
Q 001258 882 SSIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-----------LCVWSSDGW-EKQK 938 (1113)
Q Consensus 882 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~-----------v~iwd~~~~-~~~~ 938 (1113)
..|.-|....+ +.+ ..+.. ..-.-..|+|.|||.+.++.+..+. =+|+.+... ....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 23444444322 111 12222 1223456999999988887765543 112222111 0000
Q ss_pred ccccc---------cCCCCCCCCCCCceEEEccC-CcEEEE--EcCCeEEEEeCCcccee--------------------
Q 001258 939 NRFLQ---------IPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV-------------------- 986 (1113)
Q Consensus 939 ~~~~~---------~~~~~~~~~~~i~~~~~spd-g~~l~~--~~d~~v~v~d~~~~~~~-------------------- 986 (1113)
..... ...+. .....++|+|. |.+.++ +.+..=.|.-+..|.-.
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 00011 12367899999 777776 44443333222222110
Q ss_pred -------eccccCCCCCCeeEEEECC-------CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEE
Q 001258 987 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052 (1113)
Q Consensus 987 -------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~ 1052 (1113)
..+.. .+...+..+.|-. +|.++++.-..+.|....++.+..+.... . +.......+ +.+
T Consensus 238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~r~--~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--E-FLGGFGGRP--RDV 311 (331)
T ss_dssp S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--E-ECTTSSS-E--EEE
T ss_pred CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--E-ccccCCCCc--eEE
Confidence 00001 1234566666653 45566666556677777776443322111 0 111222233 357
Q ss_pred EEeCCCCCEEEEEeCCCcEE
Q 001258 1053 AAHPQEPNEFALGLSDGGVH 1072 (1113)
Q Consensus 1053 ~~~p~d~~~l~s~~~Dg~v~ 1072 (1113)
++.| ||.+.++.+.+|.|.
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 7788 788888877888764
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=1.8 Score=44.46 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=116.4
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc-cCCCCCCCCccEEEEec
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~v~~l~~s~ 828 (1113)
....+.+++|+|+.+.|++........||= ..+|.++... +.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence 344599999999999999988876555442 1234433322 222 34456788888
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeee----------cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---e
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V 894 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~ 894 (1113)
+|+++++-- ++.+.++.+.....+..+ .......-.++|+| ..+.|..+-+-.=+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887776 788888887654322111 11144577899999 55556666666667776655322 1
Q ss_pred eeeeccc-------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 895 KSKLKGH-------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 895 ~~~l~~h-------~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
+.....+ -..|.++.|.+ .+.+||-+.+++.+.-.|....-........-..+-.........++..++|..
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 1111112 23466777875 456667777777777777665321111111111111111123467888888887
Q ss_pred EEEEcCCeEEE
Q 001258 967 FLVVHETQLAI 977 (1113)
Q Consensus 967 l~~~~d~~v~v 977 (1113)
.+++.-+-...
T Consensus 298 YIvSEPnlfy~ 308 (316)
T COG3204 298 YIVSEPNLFYR 308 (316)
T ss_pred EEEecCCccee
Confidence 77765544443
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.76 E-value=2.3 Score=51.83 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=114.8
Q ss_pred EEEEEecCCcEEEEEcccceeeeeecccccC--------eEEEEEc----------------CCCCEEEEEeCCCcEEEE
Q 001258 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW 929 (1113)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~L~s~s~D~~v~iw 929 (1113)
.|.+++.++.|.-.|..+|+.+-++...... ...+++- .++..++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5666777888888888888877666432211 1123221 134578888899999999
Q ss_pred eCCCCcccccccc----ccCCCCCCCCCCCceEEEcc---CCcEEEEEc----------CCeEEEEeCCccceeeccccC
Q 001258 930 SSDGWEKQKNRFL----QIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWVPR 992 (1113)
Q Consensus 930 d~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~sp---dg~~l~~~~----------d~~v~v~d~~~~~~~~~~~~~ 992 (1113)
|.++++.....-. ....+.......-....-+| ++..++.+. +|.|+-+|.+||+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988876421100 00000000000000111112 444333321 478999999999988776531
Q ss_pred C----------------CCCCeeEEEECCCCCEEEEEe------------------CCCcEEEEecCCCceeeecCCCcc
Q 001258 993 E----------------SSAPITHATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus 993 ~----------------h~~~v~~l~~s~dg~~l~s~~------------------~Dg~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
. ....-..++++++...++.+. ..+.|.-.|.+||+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 011113456666655554422 124577778899998877652111
Q ss_pred cCCCcccCccceEEEEeCC-CCC---EEEEEeCCCcEEEEeccCCCcccc
Q 001258 1039 LPAGVSSNVHPLVIAAHPQ-EPN---EFALGLSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus 1039 ~~~gh~~~v~~i~~~~~p~-d~~---~l~s~~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
..-.....-.++ +.-.+. +|+ .++.++.+|.+++.|-++|+..|.
T Consensus 436 D~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 000001111122 221222 553 789999999999999999995554
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.64 E-value=0.043 Score=53.58 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=60.0
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce-EEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCC
Q 001258 916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR-VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRE 993 (1113)
Q Consensus 916 ~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~ 993 (1113)
.|...+.|+.|+-+++...+... .... .+.. ...-.-+..+++ +.++.|.+|..............+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~------rse~-----~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC------RSER-----FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhh------hhhh-----hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc
Confidence 34455778888888776532110 0000 0111 111223344555 589999999876322222222111
Q ss_pred CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
-......+.-..++.+..+++.||.|+-|++.-++.+....
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 12222333444566688899999999999999888876654
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.64 E-value=0.03 Score=40.24 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcce
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~ 393 (1113)
..+|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 7999999999999998 4543
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.55 E-value=2.3 Score=44.56 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=85.0
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
.+...++|+||+.+.+....++.-.+|-...+..... .+.+ ..+..-.|+++|...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~~g--~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VLTG--GSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------eccC--CccccccccCCCCEEEEEc
Confidence 7889999999997555553333333443333332221 1222 2788889999988887777
Q ss_pred CCCeEEEEE-ccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEE-ecCCCcEEEEeCC---CC------ceeeEeecc
Q 001258 440 SRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVWDAT---NG------AKQYIFEGH 508 (1113)
Q Consensus 440 ~d~~i~iwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s-~s~d~~i~iwd~~---~~------~~~~~~~~h 508 (1113)
.+...+++. ..+++..........-.+.|..+.+||||.++.++. ...++.|.|=-+. .| ..+......
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666667663 333332221111222222899999999999854444 2334666666543 23 111122233
Q ss_pred CcCEEEEeeeecCCceEEEEEec
Q 001258 509 EAPVYSVCPHHKENIQFIFSTAL 531 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~ 531 (1113)
...+..+.|.... .+++.+..
T Consensus 165 ~~~v~~v~W~~~~--~L~V~~~~ 185 (253)
T PF10647_consen 165 LSDVTDVAWSDDS--TLVVLGRS 185 (253)
T ss_pred cCcceeeeecCCC--EEEEEeCC
Confidence 4678888886543 45544443
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.51 E-value=1.3 Score=43.63 Aligned_cols=89 Identities=9% Similarity=0.116 Sum_probs=64.2
Q ss_pred cEEEEecCCCEEEEEe--CCeEEEEE--CCCCce-----eeeecC----CCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 822 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 822 ~~l~~s~~~~~l~~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
..++|+.+.+.+.... +-+|.-|| ..+|.. +..++. .....-.+++.. +|++.++.-..|+|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4678888888777665 56777787 445433 222221 111223455555 788888888889999999
Q ss_pred cccceeeeeecccccCeEEEEEc
Q 001258 889 VRVDEVKSKLKGHSKRITGLAFS 911 (1113)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s 911 (1113)
..+|+.+.++.-....|++++|-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999998889999999996
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.49 E-value=1 Score=53.30 Aligned_cols=234 Identities=11% Similarity=0.099 Sum_probs=126.6
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC-C-----cEEEEEcccc
Q 001258 828 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD 892 (1113)
Q Consensus 828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-----~v~iwd~~~~ 892 (1113)
..+..+++|+ + ..+..+|..+..-.. .+. ....-.++++. ++.+.++|+.| | .+..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3455566665 3 358888887664322 222 22224455555 56889999998 3 6778887764
Q ss_pred e--eeeeecccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCc
Q 001258 893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1113)
Q Consensus 893 ~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~ 965 (1113)
+ .+..+...........+ +|...|+||.||. |..||..+.+ +......... .-..-...-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECCE
Confidence 3 23333322222222222 7888999999964 6677766632 1111111000 112223344666
Q ss_pred EEEE-EcC------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCCceeeec
Q 001258 966 HFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRI 1033 (1113)
Q Consensus 966 ~l~~-~~d------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~~~~~~~ 1033 (1113)
..++ |.+ ..+..||..+.+....-...- ...-..++ .-++...+.||.|+. |..||..+.+....-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 6666 323 368889988877644322111 11111122 336777788887763 777888876655321
Q ss_pred CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeccCCCccccCCCC
Q 001258 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus 1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1088 (1113)
....+ .+.+. ++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 --~m~~~---rs~~g---~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 --PMTSP---RSAVG---VVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred --cCccc---ccccc---EEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11111 11111 2211 577888999887 68888888766 555444
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.052 Score=39.01 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.3
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 453 (1113)
...|.+++|||...+||.++.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 347999999999999999999999999998 444
No 411
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.37 E-value=9.3 Score=46.37 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=72.6
Q ss_pred ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEE--EecCCCceeeec
Q 001258 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRI 1033 (1113)
Q Consensus 956 ~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~v--wd~~~~~~~~~~ 1033 (1113)
.-.++.|-..++.++-...+++||+-..+..+......-...|+.+++ .+..+++|...-.|.. |+-+..+++ .+
T Consensus 937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~-~f 1013 (1205)
T KOG1898|consen 937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLI-VF 1013 (1205)
T ss_pred cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEE-EE
Confidence 345677777788888889999999988877776554333566777776 4567777776555555 444444444 22
Q ss_pred CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
. .+.-..+|+...+. |-..++.+..=|++.+-.++..-
T Consensus 1014 a-----dD~~pR~Vt~~~~l----D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1014 A-----DDPVPRHVTALELL----DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred e-----CCCccceeeEEEEe----cCCceeeccccCcEEEEECCCcc
Confidence 1 11122345543333 56789988888888888776543
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.31 E-value=2.3 Score=41.94 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred cCCeeEEEEcCCCCeeEEEE-ecCC--------CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258 465 VGGVNDIAFSHPNKQLCVIT-CGDD--------KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1113)
Q Consensus 465 ~~~V~~v~~s~~~~~~~l~s-~s~d--------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1113)
..+.+.-..+|+|+ +++. -+.- |.++.|-. +..+..+...-+--+.++|..+. ..+-++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccC-cEEEEEccCceEE
Confidence 44667778899999 4322 2211 22333321 11112222222233456676332 2455666677788
Q ss_pred EEEEcCCCCCeeeeeCCCCceEEEE-------EccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258 536 KAWLYDNLGSRVDYEAPGRWCTTMA-------YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1113)
Q Consensus 536 ~iwd~~~~~~~~~~~~~~~~v~~~~-------~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1113)
.-||.+-...... ....+..+. .-||| ++++.+|+..+++-..++|...|..+|+.
T Consensus 183 ~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 183 DAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred eeeecCCCccccc---CcceeEEeccCCCcCCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 8888442211110 000111111 12333 34566778888888999999999999999
Q ss_pred EEEEccCCCCCCcCeEEECC
Q 001258 609 LTSIDADGGLPASPRIRFNK 628 (1113)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~ 628 (1113)
+..+... ...|+|++|.-
T Consensus 246 L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 246 LLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred EEEEEcC--CCceEEEEecC
Confidence 9999877 56799999975
No 413
>PHA02713 hypothetical protein; Provisional
Probab=95.15 E-value=1.2 Score=52.84 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=96.0
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc-
Q 001258 828 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD- 892 (1113)
Q Consensus 828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~- 892 (1113)
-++...+.|+ + ..+..||..+..-. ..+....... +++. - ++++.+.|+.++ .|..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666666665 3 24778887765321 1111111111 2222 2 678888898764 4888998754
Q ss_pred -eeeeeecccccCeEEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCccccccccc-cCCC
Q 001258 893 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQ-IPTG 947 (1113)
Q Consensus 893 -~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~-~~~~ 947 (1113)
..+..+.........+++ +|+..+.||.++ .+..||..+.+ +.... ....
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence 333333222222222222 678888887653 36677766532 11111 1111
Q ss_pred CCCCCCCCceEEEccCCcEEEEE-cC------CeEEEEeCCc-cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC--
Q 001258 948 RTPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-- 1017 (1113)
Q Consensus 948 ~~~~~~~i~~~~~spdg~~l~~~-~d------~~v~v~d~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-- 1017 (1113)
+ ....+..-+|+..++| .+ ..+..||..+ .+................+. -+|+..++|+.||
T Consensus 454 r------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 454 T------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYM 525 (557)
T ss_pred c------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeeccee
Confidence 1 1112233445555554 32 2467899887 44432222111112222222 2788888999888
Q ss_pred cEEEEecCCCcee
Q 001258 1018 TVCVFSAANLKLR 1030 (1113)
Q Consensus 1018 ~v~vwd~~~~~~~ 1030 (1113)
.+..||..+.+-.
T Consensus 526 ~~e~yd~~~~~W~ 538 (557)
T PHA02713 526 LQDTFNVYTYEWN 538 (557)
T ss_pred ehhhcCccccccc
Confidence 6778888776554
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.15 E-value=1.2 Score=48.70 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=91.4
Q ss_pred EEEEecCCCEEEEEe---C----CeEEEEECCCCceeeeecCCC---CCeeEEEEecCCCcEEEEEe-------------
Q 001258 823 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM------------- 879 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~------------- 879 (1113)
.+..-|+|+.++++- + |.+.++|-++.+......... ..-..+-|.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 345568998888762 2 568889988877776654322 2245566777 666666653
Q ss_pred -------cCCcEEEEEcccceeeeeecccc--cCeEEEEEcCC--CCEEEEE-eCCCcEEEE-eCCCCccccccccccCC
Q 001258 880 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNVLVSS-GADSQLCVW-SSDGWEKQKNRFLQIPT 946 (1113)
Q Consensus 880 -------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~L~s~-s~D~~v~iw-d~~~~~~~~~~~~~~~~ 946 (1113)
...++.+||+.+.+.++++.--. ..+..|.|..+ ..+-+++ .-..+|..| ..+.++-.....+.+..
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 12479999999999998886432 23556777644 4443332 233444444 22333222222222221
Q ss_pred CC-------------CCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc---eeeccccCCC--------------
Q 001258 947 GR-------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES-------------- 994 (1113)
Q Consensus 947 ~~-------------~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~---~~~~~~~~~h-------------- 994 (1113)
.. .....-|+.+.+|.|.++|.++ ..|.++.||+..-. .+.+...++.
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 10 0002357999999999999995 79999999997643 3333222110
Q ss_pred CCCeeEEEECCCCCEEEEEe
Q 001258 995 SAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
.+...-+..|-||+.|+..+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 22346788899999987664
No 415
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=3 Score=42.92 Aligned_cols=168 Identities=7% Similarity=0.052 Sum_probs=109.2
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~ 976 (1113)
+.|-...|.++.|+|+.+.|++......-.+|=...|+.....++.... ....+.+..+|++.++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444555999999999999999888877777766666655444443322 34678888899988884 778888
Q ss_pred EEeCCccceeec-----ccc--CCC-CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcc----
Q 001258 977 IFETTKLECVKQ-----WVP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---- 1044 (1113)
Q Consensus 977 v~d~~~~~~~~~-----~~~--~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~---- 1044 (1113)
++.++....+.. +.. ..+ +.....++|+|.+..|+.+-+-.-+.||.+..+.-..... ...+++
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 887765532211 111 122 5567889999999999998888878888776332111111 111121
Q ss_pred ---cCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1045 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1045 ---~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
..|.+ +.|.+..+.+|+-+.+++.|.-.+...
T Consensus 230 ~f~~DvSg--l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSG--LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeecccc--ceecCCCCcEEEEecCCceEEEEecCC
Confidence 12333 677776777888888877777666543
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.30 E-value=7 Score=40.30 Aligned_cols=190 Identities=10% Similarity=0.080 Sum_probs=101.7
Q ss_pred cCceEEEEEeCCCceEEEeecCC--eEEEEEccccccCCCCceeeeecCeecCCCCcccccc-ccCCCCCCCCccEEEEe
Q 001258 751 ATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS 827 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s 827 (1113)
..-...+.|..+|..+-+.+.-| .++.++ +.+|+.... .+. ...--..++..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~~ 98 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITIL 98 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEEE
Confidence 34457888888888777777766 455444 445543321 111 22223445555
Q ss_pred cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-----c
Q 001258 828 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----S 902 (1113)
Q Consensus 828 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~ 902 (1113)
.|.-+.++--++...+||..+.+.+.++.-. ..=..++ . |++.|+.......++++|..+.+....+.-. -
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 4433333334899999999999988887633 3445555 3 5666777766778999998876665555322 1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc----cc---cCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF----LQ---IPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~----~~---~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
..++-|.|- +|...|=.=....|..-|..+|+.....- .. ....+.+...-...+|+.|.+..+.+.
T Consensus 175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 234556664 55555544444556666666665433111 11 011111112356789999887766653
No 417
>PRK10115 protease 2; Provisional
Probab=94.29 E-value=18 Score=44.35 Aligned_cols=244 Identities=9% Similarity=0.046 Sum_probs=115.1
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
-.+..+.++|||++|+.+.+.+--.-++ +.+.++.+|..+...+.+ .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 3466788899999877665532211111 223444455433322221 114689999999
Q ss_pred EEEEEe-C------CeEEEEECCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEec---CCcEEEEEcc--cceeeee
Q 001258 832 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK 897 (1113)
Q Consensus 832 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~v~iwd~~--~~~~~~~ 897 (1113)
.|+... + ..|+.+++.++ +....+........-..+.+.++++++..+. ++.+.+|+.. +++....
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 777664 2 25888888877 3334444333333322333336666655543 3578888853 3332222
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcC
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE 972 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D-~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d 972 (1113)
+..-.+....+. +..+.+++....+ ...++. ++.. ......+... .. ...+..+.+. +.+|+. ..+
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~l~~~--~~--~~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIPP--RE--NIMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC--cccCeEEECC--CC--CCEEEEEEEE--CCEEEEEEEeC
Confidence 221122222222 2233333333322 233344 4432 1111111111 11 0245666776 334444 355
Q ss_pred Ce--EEEEeCCccceeeccccCCCCCCeeEEEEC--CCCC-EEEEEeC---CCcEEEEecCCCc
Q 001258 973 TQ--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1028 (1113)
Q Consensus 973 ~~--v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~~---Dg~v~vwd~~~~~ 1028 (1113)
+. +.+++..++.. ..+.... ...+..+.++ +++. ++++.+. -+.+..+|..+++
T Consensus 336 g~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 336 GLTSLRQINRKTREV-IGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEcCCCCce-EEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 54 55556543332 3222111 1223333444 4443 4444443 3668889988765
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.66 Score=55.89 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=94.0
Q ss_pred CCCccEEEEecCCCEEEEEe--C-CeEEEEECCCCceee-----eecC------CCCCeeEEEEecCCCcEEEEEecCCc
Q 001258 818 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMP------PPPAATFLAFHPQDNNIIAIGMDDSS 883 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~ 883 (1113)
...+..+++.+|++..++.. + ..|..||+.+..... -+.. ......++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677778877666554 3 468999987543221 1111 12335678888844455677788999
Q ss_pred EEEEEcccce-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258 884 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1113)
Q Consensus 884 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 962 (1113)
|++..+.-.. ....+ .....+++++|+|-|+.|+.|-..|++.-|...-..+....+....+ ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 9998765322 22222 24567899999999999999999999999976542221111111111 25789999988
Q ss_pred CCcEEEE
Q 001258 963 DQIHFLV 969 (1113)
Q Consensus 963 dg~~l~~ 969 (1113)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888776
No 419
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.19 E-value=3.3 Score=45.30 Aligned_cols=195 Identities=10% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCcccccc
Q 001258 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 940 (1113)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--L~s~s-~D---~~v~iwd~~~~~~~~~~ 940 (1113)
...+++....++-+.+||+. |+.++.+. .++++.+..- -+|+. |+.++ .+ .+|++|.++.... .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence 44577777888999999987 55566653 2344444332 13333 44444 32 4699998874221 1
Q ss_pred ccccCCC-C--CCCCCCCceEEEc--c-CCcEEEE--EcCCeEEEEeCC---cc----ceeeccccCCCCCCeeEEEECC
Q 001258 941 FLQIPTG-R--TPTAQSDTRVQFH--Q-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC 1005 (1113)
Q Consensus 941 ~~~~~~~-~--~~~~~~i~~~~~s--p-dg~~l~~--~~d~~v~v~d~~---~~----~~~~~~~~~~h~~~v~~l~~s~ 1005 (1113)
+..+... + ......++.+|+- + +|.+.+. ..+|.+..|.+. ++ +.++.|.. .+.+..+....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence 1111110 0 0011235666663 3 4665444 477877777664 23 45677764 45888999998
Q ss_pred CCCEEEEEeCCCcEEEEecCC-----CceeeecCCCcccCCCcccCccceEEEEeCC-CCCEEEEEeCCCcEEEEeccCC
Q 001258 1006 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1006 dg~~l~s~~~Dg~v~vwd~~~-----~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~-d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
...+|+.+-+|.-|.-|+.+. ++++.... ..+....|..+.+-..+. .|.+|+|.=.+++..||+....
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-----g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-----GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-----SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-----ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 889999998887666666642 22232221 223456788877765542 3445666667889999998754
No 420
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.12 E-value=2.9 Score=49.61 Aligned_cols=194 Identities=8% Similarity=0.031 Sum_probs=100.9
Q ss_pred ccEEEEecCCCEEEEEe-C------CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEE
Q 001258 821 VPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQI 886 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~i 886 (1113)
-.++++. ++...++|+ | .++..||..+.+-.. .+....... .++. -+|.+.|+|+.|| +|..
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~--l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV--LDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE--ECCEEEEEeccccccccccEEE
Confidence 3344444 446666665 6 347888887655222 122111111 1222 2788999999997 4777
Q ss_pred EEcccc--eeeeeecccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeCCCCccccccccccCCCCCCCCCCCceE
Q 001258 887 YNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 958 (1113)
Q Consensus 887 wd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 958 (1113)
||..+. ..+..+.........+.+ +|...+.||.|+ ++..||..++.=.....+..... -..
T Consensus 401 YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g- 470 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFG- 470 (571)
T ss_pred ecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cce-
Confidence 887653 333333222222222233 688888888664 46778877644222222222211 122
Q ss_pred EEccCCcEEEE-EcCC-----eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCC
Q 001258 959 QFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANL 1027 (1113)
Q Consensus 959 ~~spdg~~l~~-~~d~-----~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~ 1027 (1113)
+-.-++...++ |.|+ .|..||..+.+....-........+.... -+++..++|+.||. |..||..+.
T Consensus 471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 33345555555 4444 47889988776654422111122222222 25667778887754 777776665
Q ss_pred cee
Q 001258 1028 KLR 1030 (1113)
Q Consensus 1028 ~~~ 1030 (1113)
+-.
T Consensus 549 ~W~ 551 (571)
T KOG4441|consen 549 TWT 551 (571)
T ss_pred cee
Confidence 444
No 421
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=94.08 E-value=0.13 Score=47.49 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=53.5
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccC
Q 001258 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1113)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 133 (1113)
++.. ++|+++-+.||||+..|...+|..|+++.-.-+...+.+.++.|+.+....++..++....+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~ 90 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLF 90 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHH
Confidence 4544 99999999999999999999999999977666666677888888888877777765554433
No 422
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=1.8 Score=41.90 Aligned_cols=173 Identities=11% Similarity=0.064 Sum_probs=95.9
Q ss_pred CCCEEEEEe---CCeEEEEECCCCceeeeecCCCC-----CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258 829 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1113)
Q Consensus 829 ~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-----~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1113)
+|.++.+.+ ...|++||+.+++.+..-.-... .++.+ +..+.+..-.+|.-.+||..+.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 455555554 46799999999988765432211 12222 33445556688999999999988887765
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1113)
Q Consensus 901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d 979 (1113)
..+.=++++. |+..|+.++...+++.-|.++........ -...+..- ..+..+.| -||...|- -....|...+
T Consensus 129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~-VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQ-VTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARID 202 (262)
T ss_pred cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEE-EEECCeec--ccccceee-eccEEEEeeeeecceEEEc
Confidence 3344455554 66667777666677777766533222111 11111100 11122222 13444443 2444555556
Q ss_pred CCccceeecccc----------CCCCCCeeEEEECCCC-CEEEEE
Q 001258 980 TTKLECVKQWVP----------RESSAPITHATFSCDS-QLVYAC 1013 (1113)
Q Consensus 980 ~~~~~~~~~~~~----------~~h~~~v~~l~~s~dg-~~l~s~ 1013 (1113)
.++|+.+..+.. ..|..-...+++.|++ +++++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 666665444321 1245567889999987 455555
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.99 E-value=1.4 Score=51.53 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC
Q 001258 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 544 (1113)
Q Consensus 466 ~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 544 (1113)
....-+.-|.-++ ..+..+...++.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-..
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R-- 105 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR-- 105 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc--
Confidence 3455555555566 33444455679999999887554332 357889999999999999999999999999984321
Q ss_pred CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258 545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1113)
Q Consensus 545 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1113)
..+.... -+|.+-.+.-+..++...|....|.++|..++.. ++.+.|+|-
T Consensus 106 --~dy~~~~-----p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 106 --YDYTNKG-----PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred --hhhhcCC-----cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1110000 0111111122233444566667777777644433 467888774
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.84 E-value=13 Score=41.15 Aligned_cols=132 Identities=17% Similarity=0.047 Sum_probs=62.0
Q ss_pred CeEEEEECCCCceeeeecCCCC--CeeEEEEecC-CCcEEEEEe-cCCcEEEEEc-ccce----eeeeecc---------
Q 001258 839 GKISLFNMMTFKTMATFMPPPP--AATFLAFHPQ-DNNIIAIGM-DDSSIQIYNV-RVDE----VKSKLKG--------- 900 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~-d~~~la~g~-~dg~v~iwd~-~~~~----~~~~l~~--------- 900 (1113)
.++.+||+.+.+.++++.-... ....+.|..+ +..+=++|+ -.++|..|-- ..++ .+..+..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 4699999999999998865433 2456666541 233333332 2334444432 3221 1111111
Q ss_pred --------cccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCC-----------CCCCCCCceEEE
Q 001258 901 --------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGR-----------TPTAQSDTRVQF 960 (1113)
Q Consensus 901 --------h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~ 960 (1113)
-..-|+.|..|.|.++|...+ .+|.|+.||+......+..-.....+. ..-.+...-+..
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence 124579999999999987666 689999999987543321111111100 001123467888
Q ss_pred ccCCcEEEEE
Q 001258 961 HQDQIHFLVV 970 (1113)
Q Consensus 961 spdg~~l~~~ 970 (1113)
|-||+.|.++
T Consensus 382 S~DGkRlYvT 391 (461)
T PF05694_consen 382 SLDGKRLYVT 391 (461)
T ss_dssp -TTSSEEEEE
T ss_pred ccCCeEEEEE
Confidence 9999988773
No 425
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=93.75 E-value=0.15 Score=47.69 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=46.8
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhh
Q 001258 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQL 130 (1113)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 130 (1113)
++.. ++|+++-|.||+|+..+..++|..|+.+...-+.....+.+++|..+....++..++..
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~ 98 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELA 98 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHH
Confidence 4444 99999999999999999999999999987776766667777888766665555544433
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=5.7 Score=46.32 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=96.7
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee----cccccCeEEEEEcCCC
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHAL 914 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~ 914 (1113)
-.|+||++. |..+..+.-....+..+.|+. +. -|++-..+|+++||++.. +.+... ......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 348888875 455555444445899999996 44 556678999999999763 323221 2223345555555555
Q ss_pred CEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcC---C-eEEEEeCCccceee
Q 001258 915 NVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE---T-QLAIFETTKLECVK 987 (1113)
Q Consensus 915 ~~L~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d---~-~v~v~d~~~~~~~~ 987 (1113)
-.+.+ .+|.+.+ -+...... .....++... ..-.+...-+++..... .-+ + .+..-+..+.+...
T Consensus 140 Vavlt--~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 VAVLT--VSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred eEEEe--cCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 43333 3444433 23322110 0011111110 01123322233221111 111 0 11111111112111
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCC
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~ 1036 (1113)
.-. . .+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+...
T Consensus 212 ~~~--~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 212 LSW--P-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred cCC--C-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111 1 367888999999999999999999999999988888887643
No 427
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.69 E-value=1.4 Score=50.32 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=54.2
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~ 499 (1113)
...++++.-+|.|..++.+..||+|++|+.......+ +-....+-..+.|...| +++...|..+--|. +.|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 3467888888999999999999999999987644321 21223345566776555 56666788888887 666
Q ss_pred ceeeEee
Q 001258 500 AKQYIFE 506 (1113)
Q Consensus 500 ~~~~~~~ 506 (1113)
.....|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 5555443
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.44 E-value=12 Score=45.56 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCeeEEEEecCCCcEEEEEecCCcEEEEEccc----------cee--e-eee--------cccccCeEEEEEcCC---CC
Q 001258 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------DEV--K-SKL--------KGHSKRITGLAFSHA---LN 915 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----------~~~--~-~~l--------~~h~~~V~~l~~s~d---~~ 915 (1113)
-.|..+.++| +|++||..+..| |.|-.+.. |+. . +.+ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3588899999 899999888765 44444421 111 1 111 234567899999986 58
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 001258 916 VLVSSGADSQLCVWSSDGW 934 (1113)
Q Consensus 916 ~L~s~s~D~~v~iwd~~~~ 934 (1113)
.|+.-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999753
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.39 E-value=10 Score=38.63 Aligned_cols=244 Identities=12% Similarity=0.079 Sum_probs=144.2
Q ss_pred CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
.......++-++||..-.++. .+.|--.|-.+++....--+....-..+..-| |+..-++-+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence 345567788899998888776 57777788888887666555556667778888 44443332222 3444454443321
Q ss_pred e-e--ecccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 896 S-K--LKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 896 ~-~--l~~h~~~V~~l~~s~d~~~L~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
. . .+.-........|.++|++-+++... +.|++|+.- .+ ...+.++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG-----~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QG-----GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CC-----CCCcceEECCC
Confidence 1 1 12234557788899999988887532 234444432 22 24578999999
Q ss_pred CcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC
Q 001258 964 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus 964 g~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
|...+++ .+..|...|..++..-....+.+-...-..+--+|.|+.-++....+.+.-||-.... -..+. +| +
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LP-g 273 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LP-G 273 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CC-C
Confidence 9988875 5666777776666322222222212334455557778877777777778888766544 22332 22 3
Q ss_pred cccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC-ccccCCCCC
Q 001258 1043 VSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPPV 1089 (1113)
Q Consensus 1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~~~ 1089 (1113)
...+-.++.+- ..++.-.+--..|.|.-+|.++.. .++..++|-
T Consensus 274 s~arpys~rVD---~~grVW~sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 274 SKARPYSMRVD---RHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred CCCCcceeeec---cCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence 33344433332 233333444456778888877766 666666663
No 430
>PHA03098 kelch-like protein; Provisional
Probab=93.22 E-value=4.4 Score=48.33 Aligned_cols=187 Identities=7% Similarity=0.004 Sum_probs=91.2
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccce
Q 001258 828 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 893 (1113)
Q Consensus 828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~ 893 (1113)
.++..++.|+ + ..+..||..+.+-... +....... +++ .- ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VF-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EE-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3555556554 2 2477888776544221 11111112 222 22 677888888653 57788876643
Q ss_pred --eeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCC
Q 001258 894 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 894 --~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg 964 (1113)
....+........ ++ .-+++..+.||.+ ..+..||..+.+ +.... .+..+ . ...+...++
T Consensus 370 W~~~~~lp~~r~~~~-~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r-----~-~~~~~~~~~ 438 (534)
T PHA03098 370 WREEPPLIFPRYNPC-VV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPISH-----Y-GGCAIYHDG 438 (534)
T ss_pred eeeCCCcCcCCccce-EE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCccc-----c-CceEEEECC
Confidence 2222211111111 12 2356777777732 357888887643 11111 11111 1 122333455
Q ss_pred cEEEEE-cC--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258 965 IHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus 965 ~~l~~~-~d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
+.+++| .+ ..+.+||..+.+....-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 555553 21 238889988776543321111011111222 267777777754 46888888776543
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.14 E-value=1.9 Score=50.56 Aligned_cols=119 Identities=11% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec-ccccCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCCC
Q 001258 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW 934 (1113)
Q Consensus 858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~L~s~s~D~~v~iwd~~~~ 934 (1113)
....++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. ||++.+++.|-.+.|.++.-...
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 45555554455689999998876442222 356889999986 79999999999999999864211
Q ss_pred ----ccccccccccC--CCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258 935 ----EKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1113)
Q Consensus 935 ----~~~~~~~~~~~--~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~ 980 (1113)
.......+... ..+++ .+|....|.++|..++ +...++.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 11111111111 22222 4788999999997655 44667777764
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.11 E-value=0.085 Score=61.22 Aligned_cols=178 Identities=13% Similarity=0.196 Sum_probs=101.5
Q ss_pred CeEEEEECC--CCcee-----eeecCCCCCeeEEEEecC--CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEE
Q 001258 839 GKISLFNMM--TFKTM-----ATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1113)
Q Consensus 839 g~i~vwd~~--~~~~~-----~~~~~~~~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1113)
|.+.||+++ .|+.. .........+.-+.|.|- ..-++..+..++.|++.+...... ..+++|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678889876 33322 112222333455555541 456777888889998887765332 45567887777665
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-------Cc--EEEE
Q 001258 910 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV 969 (1113)
Q Consensus 910 -----------~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-------g~--~l~~ 969 (1113)
.||||+.+|.++.||.++.|.+.-..+...+++..-..|.. .+-.|..|..+ +. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876444433344433333321 22233334332 22 2233
Q ss_pred E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE------------EEEEeCCCcEEEEec
Q 001258 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSA 1024 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~s~~~Dg~v~vwd~ 1024 (1113)
+ .++.+++|.-...+|...+. ...|..+. -+||+. +++-+-|+.|.+|.=
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 3 34568888887777763332 22333333 333321 234456788888853
No 433
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=4.4 Score=47.17 Aligned_cols=196 Identities=9% Similarity=0.125 Sum_probs=103.2
Q ss_pred CccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEe
Q 001258 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGM 879 (1113)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~ 879 (1113)
+|+++....-. | ..+..+.|+.+..+|++.-+|+++||++-.. .+.. +......|..+.|.. +| +++-.
T Consensus 72 sG~lL~~~~w~--~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt 144 (829)
T KOG2280|consen 72 SGQLLGRILWK--H-GELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFH-NG--VAVLT 144 (829)
T ss_pred cccchHHHHhc--C-CCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEec-Cc--eEEEe
Confidence 45544443332 3 3778899999999888888999999998532 2222 122334466566655 45 33344
Q ss_pred cCCcEEEEEcccceeeeeecc---cccCeEEEEEcCCCC---EEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258 880 DDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALN---VLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1113)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~---~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1113)
.+|.|.+-.-.+...+.++.. ..-+-++....+++. .++-.. ..+ ..+.-.+... ......... .
T Consensus 145 ~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~ 216 (829)
T KOG2280|consen 145 VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----N 216 (829)
T ss_pred cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----C
Confidence 456665543222222222221 111112222222211 111111 011 1122222211 111111111 1
Q ss_pred CCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 953 QSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 953 ~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
..+..+..||+.++|+- ...|.+.+-+.+..++...+....|..+ ..++|.. .|..+.+|+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcg---------ndaVvl~~e~ 279 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCG---------NDAVVLSWEV 279 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-Hhceeec---------CCceEEEEee
Confidence 46788999999999998 7899999999998888888776554333 3566643 3455555653
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.03 E-value=13 Score=38.84 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=115.6
Q ss_pred CeeEEEEecCCCcEEEEEecCCcEEEEEccc-------ceeeeeecc-----cccCeEEEEEcCCCCE------------
Q 001258 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKG-----HSKRITGLAFSHALNV------------ 916 (1113)
Q Consensus 861 ~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~-----h~~~V~~l~~s~d~~~------------ 916 (1113)
.-..++|+| .+.+-++....+...+||... ..++-.+.. -....+.+.|+....+
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 356789999 777777777788999999861 122333331 2346788888743322
Q ss_pred EEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEcc--CCcEEEEE--cCCeEEEEeCCcccee--ecc
Q 001258 917 LVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV--HETQLAIFETTKLECV--KQW 989 (1113)
Q Consensus 917 L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~--~d~~v~v~d~~~~~~~--~~~ 989 (1113)
++.+++||+|.-|.-.-..... ...+........ ..-..+++.. .+.+|..+ ..++|.|||-.-.... ..|
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 5678899999999854322200 001111111111 1223455553 35666664 7889999986433221 111
Q ss_pred ccC---CC-----------CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEE--
Q 001258 990 VPR---ES-----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA-- 1053 (1113)
Q Consensus 990 ~~~---~h-----------~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~-- 1053 (1113)
... .. .-.|+-..-.+++..=+.|..-|.|-+||.. |++++++.... .=...+.+.++
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-----~LNaPWG~a~APa 254 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-----RLNAPWGLAIAPE 254 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-----cccCCceeeeChh
Confidence 100 00 0011111112222222333345789999986 67777775322 22334544332
Q ss_pred -EeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1054 -AHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1054 -~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|-.-.|.+|+---.||+|..+|..+++
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 111236788877789999999999888
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=1.7 Score=52.59 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=65.5
Q ss_pred CccEEEEecCCC--EEEEEeCCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 820 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 820 ~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
...++.|.|.-. .++.-.|+.|+|..+..... ...+. .....+|++|+| .|+.+++|...|++.-|... ++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345666776543 23333488898887753222 22222 345689999999 89999999999999988643 33333
Q ss_pred eecc----cccCeEEEEEcCCCCEEEEEe
Q 001258 897 KLKG----HSKRITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~L~s~s 921 (1113)
.+.+ ...+|.+|+|-....+||+-+
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEec
Confidence 3321 247899999988777777543
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.70 E-value=22 Score=40.60 Aligned_cols=126 Identities=16% Similarity=0.334 Sum_probs=77.2
Q ss_pred EeccCCCCcEEEEEcCCC----CeEEEEEecCCcEEEEecC-----CcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258 353 RTLNQGSSPMSMDFHPVQ----QTLLLVGTNVGDIGLWEVG-----SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg----~~ll~~gs~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 423 (1113)
..++.-+.|..+.|+|-+ ..|||+ .....|.||.+. +++.+.. +..++...-. ++ -
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~s---QtcEi~e~~p-----vL------p 115 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMS---QTCEIREPFP-----VL------P 115 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceee---eeeeccCCcc-----cC------C
Confidence 345666779999999863 345555 667899999985 2333222 1111111100 01 1
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
..+-|+|....|++-.....-.++++.... .++ ..+ .-.+.|.|.+|.+||.+++++.|+ .=.-+|||-.
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 236799999998886655544566665432 222 133 345789999999999986556555 4456899843
No 437
>PHA03098 kelch-like protein; Provisional
Probab=92.64 E-value=4 Score=48.72 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=72.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEEc---C----CeEEEEe
Q 001258 913 ALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFE 979 (1113)
Q Consensus 913 d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~~---d----~~v~v~d 979 (1113)
+++..+.||.+ ..+..||..+.+ +.... .+..+. -.++ ..-+++..+.|. + ..+..||
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~lp~~r~-----~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK---WREEPPLIFPRY-----NPCV-VNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc---eeeCCCcCcCCc-----cceE-EEECCEEEEECCcCCCCcccceEEEEe
Confidence 67777888765 346778876643 11111 111111 1122 234556555532 1 3588899
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC--------CcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
..+.+....-.... ...-.+ +...+++..+.|+.+ ..+.+||..+.+-...-. .+... . -...
T Consensus 413 ~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r-~-~~~~- 483 (534)
T PHA03098 413 LNTNKWSKGSPLPI-SHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPR-I-NASL- 483 (534)
T ss_pred CCCCeeeecCCCCc-cccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCccc-c-cceE-
Confidence 88765433211110 111112 223366666667643 238888988765542211 11010 0 1111
Q ss_pred EEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258 1052 IAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus 1052 ~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
+.+ ++.+++.|+.+ +.+.++|+.+.+
T Consensus 484 ~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 484 CIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEE---CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 221 56777777765 468888888765
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.55 E-value=0.23 Score=57.86 Aligned_cols=166 Identities=12% Similarity=0.069 Sum_probs=96.8
Q ss_pred CCCCcEEEEEc----CCCCeEEEEEecCCcEEEEecC--CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 357 h~~~V~~~~~s----pdg~~ll~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
-.+.|-.++|- |.+. -.-|...|||+. .|+......+++.+. ....-..|.-+-|-+
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~~~p-----------~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTPITP-----------YGSDPQLVSWCPIAV 193 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEeecCc-----------CCCCcceeeeccccc
Confidence 56777777773 3333 123677888875 355443333322210 111112333334444
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE-----------cCCCCeeEEEEecCCCcEEEEeCC--
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDAT-- 497 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~~~~~~~l~s~s~d~~i~iwd~~-- 497 (1113)
+.-++..+-.++.|++.++.+... .-+++|..++..++| ||||+ .|+.++.||.++.|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeee
Confidence 778888888899999887776543 135678888777665 78898 78888999988888654
Q ss_pred ---CCceeeEeeccCcCEEEEeeeecCC---------ceEEEEEec-CCcEEEEEcCCCCCe
Q 001258 498 ---NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR 546 (1113)
Q Consensus 498 ---~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~~ 546 (1113)
..+|++.++.|++.-. +||+...+ -.++++++. +..+++|.....++.
T Consensus 268 g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3355666676763221 12222111 123455544 456899976655544
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=92.37 E-value=20 Score=39.39 Aligned_cols=156 Identities=10% Similarity=0.025 Sum_probs=88.0
Q ss_pred CCCeeEEEEecCCCcEEEEEecCCcEEEE-Ecccceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIY-NVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1113)
Q Consensus 859 ~~~i~~l~~s~~d~~~la~g~~dg~v~iw-d~~~~~~~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~ 936 (1113)
...+..+.+.| ++.+++++. .|.+..- | ..++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899998 776766554 5655432 2 11221211 22344678999999998876654 567654322333221
Q ss_pred ccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeC
Q 001258 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
.......... ....+..+.+.+++..++++.++.+. ...+.++.-..... ..-....+.+.|..+++.+++ +.
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence 1111111010 11246788999999888888877665 34454544333221 111345778888877776654 45
Q ss_pred CCcEEEEec
Q 001258 1016 DATVCVFSA 1024 (1113)
Q Consensus 1016 Dg~v~vwd~ 1024 (1113)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888877653
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.33 E-value=6.1 Score=39.10 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=84.6
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC------cEEEE---E
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 888 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg------~v~iw---d 888 (1113)
....++.++.+..+++++..+|.+|++. ..+.+.+|..- +.|..++++. .|++|++--++. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4455665554455555668899999988 34455666643 6799999999 899999864332 56665 2
Q ss_pred cc--cceee-eeeccc---------------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc--ccc
Q 001258 889 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN--RFL 942 (1113)
Q Consensus 889 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~--~~~ 942 (1113)
.. ..+.+ ..+-|| +.++.+++..|-..-|+.|+ ++++.+|.+........ ..+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 21 11111 122232 23566777776544444444 45699998876433111 111
Q ss_pred ccCCC---CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258 943 QIPTG---RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1113)
Q Consensus 943 ~~~~~---~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~ 980 (1113)
..... +.. ...+..+++ -+.|+|..++..++++.+
T Consensus 176 DFe~~l~~~~~-~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHID-NFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheec-CceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 11100 000 001122222 356777777777777765
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.25 E-value=4.2 Score=45.54 Aligned_cols=149 Identities=9% Similarity=0.107 Sum_probs=76.9
Q ss_pred cCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 903 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s-----------~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.....|+|.++|+++++-. ..+ .|.+++-..+.-..........+. .....+++.++| .++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV-~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYV-A 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEE-e
Confidence 3467788988888877653 122 576666443221111111111111 235789999999 444 4
Q ss_pred cCCeEEEE-eCCcc-----c--ee-eccccCC--CCCCeeEEEECCCCCEEEEEeCC-------------------CcEE
Q 001258 971 HETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVC 1020 (1113)
Q Consensus 971 ~d~~v~v~-d~~~~-----~--~~-~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~D-------------------g~v~ 1020 (1113)
....|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|.
T Consensus 88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 34445544 44211 1 11 1222211 23457889999999876655521 3455
Q ss_pred EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC
Q 001258 1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD 1068 (1113)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D 1068 (1113)
-++.++++.. .+ ..|+. .+..++|+| +|+++++-..+
T Consensus 168 r~~pdg~~~e-~~------a~G~r---np~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLR-VV------AHGFQ---NPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEE-EE------ecCcC---CCccceECC-CCCEEEEccCC
Confidence 5555544332 11 11322 233488988 68887764433
No 442
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.18 E-value=17 Score=38.03 Aligned_cols=222 Identities=16% Similarity=0.243 Sum_probs=126.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEcc------CCceeeeeeeeec-----ccCCeeEEEEcCCCCe----------e
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 480 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~----------~ 480 (1113)
.-+.|+++|.+.+-++....+...+||.. ..+.+. .++.. -....+.+.|+..... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999999888888788899999986 122121 12221 2345777887754331 1
Q ss_pred EEEEecCCCcEEEEeCCCCce-----eeEee-ccCcCE-EEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCCee--eee
Q 001258 481 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 550 (1113)
Q Consensus 481 ~l~s~s~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~ 550 (1113)
.++.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998543322 11222 112223 344544444445555554 47888888754321110 010
Q ss_pred CCCCceEEEEEccCC-----CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258 551 APGRWCTTMAYSADG-----TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625 (1113)
Q Consensus 551 ~~~~~v~~~~~s~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 625 (1113)
.+. + -.-+.|-+ ..++ +....-++++..=+.|..-|.|-+||. .|..++.+...+....-..++
T Consensus 182 DP~--i-PagyAPFnIqnig~~ly-------VtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLGGTLY-------VTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred CCC--C-CCCCCCcceEEECCeEE-------EEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceee
Confidence 000 0 00011111 1111 111112333333455666789999997 678888886655555566777
Q ss_pred ECC------CCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 626 FNK------DGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 626 ~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
..| .+.+|+---.||+|..+|..++ +.+-.+
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L 287 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQL 287 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence 765 5778888888999999999888 444444
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=92.10 E-value=7.9 Score=45.18 Aligned_cols=183 Identities=10% Similarity=-0.020 Sum_probs=88.8
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccc--eeee
Q 001258 829 NDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVKS 896 (1113)
Q Consensus 829 ~~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~--~~~~ 896 (1113)
++..+++|+ + .++..||..+.+-.. .+...... .+++ .- ++.+.++|+.++ .+..||..++ ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 2 247778877644322 22211111 2222 23 778888888643 5788887653 3333
Q ss_pred eecccccCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258 897 KLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1113)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~ 973 (1113)
.+.........+. -+|+..+.||.++ .+..||..+.+ +........ + .-...+..-+|+..++| |
T Consensus 348 ~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~--~---r~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYY--P---HYKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCC--c---cccceEEEECCEEEEEC--C
Confidence 3321111112222 3678888887654 46778876532 221111110 0 01122334566666655 3
Q ss_pred eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCc
Q 001258 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1028 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~ 1028 (1113)
.+.+||..+.+....-......... +++ .-+|+..+.||.+ ..|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 5778888776654322111101111 222 2367777777754 245566665543
No 444
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.05 E-value=16 Score=39.12 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=93.8
Q ss_pred eEEEEECCCCceeeeecCC------CCCeeEEEEecCCC----cEEEEEe-cCCcEEEEEcccceeeeeecccc------
Q 001258 840 KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAIGM-DDSSIQIYNVRVDEVKSKLKGHS------ 902 (1113)
Q Consensus 840 ~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~------ 902 (1113)
+|.+||+.+.+.++++.-. .+....+.+...++ .++..+. ..+.+.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999888776432 34567787776332 3444443 34589999999877655543321
Q ss_pred -------------cCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCccccccc---------cccCCCCCCCCCCCce
Q 001258 903 -------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRF---------LQIPTGRTPTAQSDTR 957 (1113)
Q Consensus 903 -------------~~V~~l~~s~---d~~~L~s~s~D~~v~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~i~~ 957 (1113)
+.+.+++.+| ++++|.-..-.+ -++|.+.+........ .+.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 2366666654 666666655433 3455444321111000 0010 1110 24467
Q ss_pred EEEccCCcEEEE-EcCCeEEEEeCCccc---eeeccccCCC-CCCeeEEEECC--CCCEEEEE
Q 001258 958 VQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHATFSC--DSQLVYAC 1013 (1113)
Q Consensus 958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~---~~~~~~~~~h-~~~v~~l~~s~--dg~~l~s~ 1013 (1113)
++++++|..+++ .....|..|+..+.- ....+..+.. -..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 899999998888 588899999987621 1122222222 34677888888 66655544
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.75 E-value=19 Score=40.39 Aligned_cols=201 Identities=10% Similarity=-0.043 Sum_probs=105.9
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-
Q 001258 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS- 902 (1113)
Q Consensus 826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~- 902 (1113)
...+++.++...+|.|.-+|..++..+....... ..+.+-.+.. +|+ +.+++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446666666568888888888887654333221 2233333333 565 6678889999999988898887766555
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc--CCeEEEEeC
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET 980 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~--d~~v~v~d~ 980 (1113)
-.+..-..-.++ .+...+.|+.+...|-.+++..-......... ..+..-....++..++... ++.+.-+|.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLS-----LSIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccc-----cccccCceeecceEEEecCCCcceEEEEEc
Confidence 111111222233 23333356767766666655422111110000 0111111133444444444 456777788
Q ss_pred Cccceeecccc---CCCCCCeeEEEECC-----CCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 981 TKLECVKQWVP---RESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 981 ~~~~~~~~~~~---~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
.+|+....... .+.. .+....... .+.-++.++.++.+...+..+++.+-++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 77777655321 0111 010011111 112235677788899999999999988763
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=91.60 E-value=25 Score=38.74 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=84.8
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~ 981 (1113)
.+.+.++.+.+++.+++++ ..|.+.. ..+.+. ......... ....+..+.+.+++..++++..+.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999988666554 4554432 111111 011111111 1136789999999998888877776533344
Q ss_pred ccceeeccccC--CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 982 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 982 ~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
.|..-...... .....+.++.+.+++..+++ +.+|.|. ...+.++.-..+.... +-....+ .+.|.. +
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~----~~~~~~~--~~~~~~-~- 313 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGE----EVPSNFY--KIVFLD-P- 313 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCC----CCCcceE--EEEEeC-C-
Confidence 44432221111 11345788999998876554 4577665 3455555443332101 1111223 244443 3
Q ss_pred CEEEEEeCCCcEEEEec
Q 001258 1060 NEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~~ 1076 (1113)
+.....+..|.|.-|+-
T Consensus 314 ~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 314 EKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CceEEECCCceEEEecC
Confidence 34455567898887763
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.47 E-value=5.3 Score=44.79 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=80.1
Q ss_pred CCeeEEEEecCCCcEEEEEe-----------cCC-cEEEEEccc--ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258 860 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D 923 (1113)
.....++|.+ +|+++++-. ..+ .|.+++-.. |+ ....+.......+++++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3467788888 777766542 223 677776432 22 123343334456889999988 444 4444
Q ss_pred CcEEEEeCCCCcccc---ccccccCCCC-CCCCCCCceEEEccCCcEEEE-EcC-------------------CeEEEEe
Q 001258 924 SQLCVWSSDGWEKQK---NRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE 979 (1113)
Q Consensus 924 ~~v~iwd~~~~~~~~---~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~~-~~d-------------------~~v~v~d 979 (1113)
...++.+.+...... .......... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433343544321111 1111111111 001134678999999987776 421 3355555
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1016 (1113)
..+++. ..+. .+ -.....++|+++|+++++-..+
T Consensus 171 pdg~~~-e~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVVA-HG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEEe-cC-cCCCccceECCCCCEEEEccCC
Confidence 554432 2222 22 3445789999999987764433
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.78 E-value=1 Score=31.42 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.7
Q ss_pred cceEEEEEcCCC---CeEEEEeCCCeEEEEEccCC
Q 001258 421 VSVNRVIWSPDG---SLFGVAYSRHIVQIYSYHGG 452 (1113)
Q Consensus 421 ~~V~~l~~spdg---~~las~~~d~~i~iwd~~~~ 452 (1113)
+.|.++.|||+. .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888888899999999863
No 449
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.67 E-value=0.045 Score=59.20 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=97.0
Q ss_pred EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
...+-+.+..++.++.+..+..||-.. +.+.. .........++|+.++..+++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le----~n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE----LNPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc----cCCchhHhhhhhccccchhhh
Confidence 344556666688888887777766331 11110 013445566788888887776
Q ss_pred Ee--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC
Q 001258 836 AS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1113)
Q Consensus 836 ~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1113)
.. .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 65 68999999976433221112222223378998 8889999999999999998877766666569999999999987
Q ss_pred CCEEEEEeCCCcEEEE
Q 001258 914 LNVLVSSGADSQLCVW 929 (1113)
Q Consensus 914 ~~~L~s~s~D~~v~iw 929 (1113)
+ +.+.++.|..+.+-
T Consensus 171 d-~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVT 185 (615)
T ss_pred c-eeeecCcHHHHHHh
Confidence 5 56667777655443
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.41 E-value=5.4 Score=48.32 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=55.3
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCcEEEEecCC----------C--ceeeec-CCCccc-CCCcccCccceEEEEeCC--C
Q 001258 995 SAPITHATFSCDSQLVYACFLDATVCVFSAAN----------L--KLRCRI-NPSAYL-PAGVSSNVHPLVIAAHPQ--E 1058 (1113)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~----------~--~~~~~~-~~~~~~-~~gh~~~v~~i~~~~~p~--d 1058 (1113)
.-.|..+.++|+|++|+..|..| |.|-.+.. | +..|+. .....+ ...+...| ..+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i--~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEI--KQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceE--EEEEEcCCCCC
Confidence 45789999999999999988765 44444431 1 222222 222221 11222333 46999995 3
Q ss_pred CCEEEEEeCCCcEEEEeccCCCcccc
Q 001258 1059 PNEFALGLSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus 1059 ~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
+..|++-..|+++++||+......+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeE
Confidence 56788888999999999987664333
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.07 E-value=15 Score=40.74 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=89.4
Q ss_pred EEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC------CceEEEEEecCCcEEEEEcCCCC
Q 001258 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLG 544 (1113)
Q Consensus 471 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 544 (1113)
+-...+.+.+++..|+....++--|++.|+.+-.+.-|...| +.+.|.. +.+.|+ |-.+..|.-.|.+-..
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333334444466677777888888999999999998887664 3444432 223344 4445555545554333
Q ss_pred CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeE
Q 001258 545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624 (1113)
Q Consensus 545 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 624 (1113)
..............-.|+.-+ .....++++++..|.|++||--.-+....+.+-+ ..|..+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~-----------------tTesGyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~i 609 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGM-----------------TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHI 609 (776)
T ss_pred Cceeeeeehhccccccccccc-----------------cccCceEEEecCCCceeeehhhcchhhhcCcccc--cceeee
Confidence 211111111111111111111 1223479999999999999965444334444333 368889
Q ss_pred EECCCCCEEEEEECCCcEEEEEcC
Q 001258 625 RFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 625 ~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
..+.+|+++++.+. ..+.+.|+.
T Consensus 610 dvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeec-ceEEEEecc
Confidence 99999998887765 466666653
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.59 E-value=15 Score=43.74 Aligned_cols=116 Identities=7% Similarity=0.039 Sum_probs=76.9
Q ss_pred ceEEEEEcC--CCCeEEEEeCCCeEEEEEccC-------C----------ceeeeeeeeecccCCeeEEEEc--CCCCee
Q 001258 422 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL 480 (1113)
Q Consensus 422 ~V~~l~~sp--dg~~las~~~d~~i~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~~~~~~ 480 (1113)
.|+.|.... +...|+.|.+||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 577776655 677899999999999997632 0 0112222333 33478999998 5555
Q ss_pred EEEEecCCCcEEEEeCCCC--ceee-EeeccCcCEEEEeeeecCC---ce-EEEEEecCCcEEEEEc
Q 001258 481 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKEN---IQ-FIFSTALDGKIKAWLY 540 (1113)
Q Consensus 481 ~l~s~s~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~ 540 (1113)
+||.++....|.||-.... +... .-..|...|-+|+|..... |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 1111 1112567788888876652 32 7888899999999887
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=11 Score=36.62 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=96.8
Q ss_pred CCcEEEEEecC--CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCC
Q 001258 871 DNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1113)
Q Consensus 871 d~~~la~g~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1113)
++.++.+.+.- ..|++||+.+++.+..-.-....+.+=-...-|..+ +-.=.||.-.++|.++-++... ..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~-----~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR-----FSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc-----ccc
Confidence 56677666543 479999999988765433222222211111112222 2233577788888887433211 110
Q ss_pred CCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCe---eEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 948 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPI---THATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 948 ~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v---~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
.-.......|++.|+.+ ....++.-|.++..............+| ..+.|- ||...|-.-.+..|..-+
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11334455666666664 3445666666655544333221112222 233332 676666666677777778
Q ss_pred cCCCceeeecCCCcccCC----CcccCccceEEEEeCCCCCEEEEEe
Q 001258 1024 AANLKLRCRINPSAYLPA----GVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~----gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
.++|+....+..+.-.+. +....|.. -+++.|+.++++++|-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN-GIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN-GIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCcccccccccc-ceeecCcCCeEEEecC
Confidence 888888887765332221 11112222 4888886667777764
No 454
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.50 E-value=3.3 Score=44.80 Aligned_cols=170 Identities=11% Similarity=0.062 Sum_probs=92.7
Q ss_pred eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eee-ccccc----CeE-EEEEcCCCCEEEEEeCCC
Q 001258 852 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGADS 924 (1113)
Q Consensus 852 ~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~L~s~s~D~ 924 (1113)
++.+......+..+-..| ||+.|..-+. .++.|+++.+...- +++ ....+ .|+ .+..-..|.-|..++.||
T Consensus 213 i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 334555566788888999 8888876654 68889988764321 111 11111 222 222234567788899999
Q ss_pred cEEEE-eCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEE
Q 001258 925 QLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1113)
Q Consensus 925 ~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1113)
.|.-| |+..+............ -...++..+.-..+.+-++. ...|++.++.....+.+..-. --..+.-++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~---l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFK---LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccc---cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcceee
Confidence 99888 44443322111111111 10012222221222233333 456667666544333322111 123567789
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258 1003 FSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus 1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
+||.+.+|++-. .|.|+++.+++...-
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCCC
Confidence 999999998753 678999998875443
No 455
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.39 E-value=1.3 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCeeEEEEecCCC--cEEEEEecCCcEEEEEccc
Q 001258 860 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 860 ~~i~~l~~s~~d~--~~la~g~~dg~v~iwd~~~ 891 (1113)
+.+.++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998555 6999999999999999985
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.15 E-value=43 Score=37.63 Aligned_cols=151 Identities=10% Similarity=0.065 Sum_probs=82.9
Q ss_pred eEEEEecCCCcEEEEEecCCcEEEEEccccee--eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-
Q 001258 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN- 939 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~- 939 (1113)
..+..++ ++.++++|..-..++-||- +.. ...-......++++.|.+++..++.+ .+|.+ +|..+.+..-..
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 3455666 6777776654333333442 221 11112234568999999998877655 56654 344444321100
Q ss_pred cccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCc
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDAT 1018 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~ 1018 (1113)
........ .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.
T Consensus 317 ~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 317 DFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 01111100 001247889999999999989888776654 3343322211 12224578899998887766655 5787
Q ss_pred EEEE
Q 001258 1019 VCVF 1022 (1113)
Q Consensus 1019 v~vw 1022 (1113)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 6554
No 457
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.62 E-value=70 Score=39.40 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=64.6
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc--ccceeeeeec
Q 001258 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK 899 (1113)
Q Consensus 824 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~ 899 (1113)
.|+.|...++.+|-...+++||+...+.++... .....|+.+.+. +..+++|..--.|..+.. ...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 466678889999889999999998777665533 234557777764 467777876555655443 33343 3332
Q ss_pred c--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 900 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 900 ~--h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
+ -..-|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 22336666655 44567766666655555543
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.56 E-value=1.6 Score=29.94 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.0
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEE
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 386 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iw 386 (1113)
.......-.+..|||||++++.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778999999999988888777 766666
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=7.7 Score=43.11 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=32.6
Q ss_pred cCccceEEEEeCCC--CCEEEEEeCCCcEEEEeccCCCccccCCCC
Q 001258 1045 SNVHPLVIAAHPQE--PNEFALGLSDGGVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus 1045 ~~v~~i~~~~~p~d--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1088 (1113)
..++-..++|+|+. ...|..-+.|+.|++++++...+.|..+.+
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 34444568899853 356777788999999999998877666554
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.66 E-value=39 Score=37.02 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=89.2
Q ss_pred ccCceEEEEEeCCCceEEEeecCCe------EEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 750 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
.-+.++.+.+.+++..+++.+++|. +..+++..... ..........+.+-+. .|..... ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~-~G~~~~~------~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDP-DGQPFPK------NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCC-CCCcCCc------CCCChhH
Confidence 3456789999977777888888877 55555543111 0111111111111121 1221110 1225678
Q ss_pred EEEecCCCEEEEEe-C------CeEEEEECCCCceeeeec---------------CCCCCeeEEEEecCCCcEEEEEec-
Q 001258 824 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD- 880 (1113)
Q Consensus 824 l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~d~~~la~g~~- 880 (1113)
+++.++|.++++.- + ..|+.++.. ++....+. ......-+++++| +|+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888887775 5 678888876 55544431 1234578899999 7885555432
Q ss_pred ----CC--c-------EEEE--Eccc-cee----eeeecc-----cccCeEEEEEcCCCCEEEE
Q 001258 881 ----DS--S-------IQIY--NVRV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVS 919 (1113)
Q Consensus 881 ----dg--~-------v~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~L~s 919 (1113)
|+ . ++|+ |..+ ++. ...+.. ....|+.+.+-+++++|+-
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 4555 4443 222 223332 3567888999999887763
No 461
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.23 E-value=46 Score=35.69 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=107.2
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1113)
...++.|..+ ..+++|..+. .+...+.++.-..+. .-......+.... ++..++ ++..|.|+. ... |+.-
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence 3566777543 4455555553 334444444333322 1122333344433 343333 344555433 322 3222
Q ss_pred -eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258 896 -SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1113)
Q Consensus 896 -~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~ 974 (1113)
.....-.+.+..+..++||+++++++.-..+.-||-.... ........ ...|..+.|+|++...+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 2233445778899999999998888766666677754311 11111111 14789999999999888888888
Q ss_pred EEEEe-CCccceeec-ccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258 975 LAIFE-TTKLECVKQ-WVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus 975 v~v~d-~~~~~~~~~-~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
|+.=+ ....+.-.. ... ......+..++|.+++...++|+ .|.+.+ ..+.|+--.+-.... ...+..+.
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~----~~~~n~~~-- 280 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGE----NVPSNLYR-- 280 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGT----TSSS---E--
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECcccc----CCCCceEE--
Confidence 88876 222222111 111 11234589999999988777665 554443 445555544433111 12234443
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEE
Q 001258 1052 IAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus 1052 ~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
+.|.+ ++.-...+.||.|.-|
T Consensus 281 i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEcC--CCceEEECCCcEEEEe
Confidence 56654 2455555678877655
No 462
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.92 E-value=59 Score=36.65 Aligned_cols=158 Identities=9% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCCCeeEEEEecCCCcEEEEeCCCCcee--eEe--eccCcCEEEEeee---ecCCceEEEEEecCCcEEEEEcCCCCCee
Q 001258 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIF--EGHEAPVYSVCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1113)
Q Consensus 475 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~--~~h~~~v~~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 547 (1113)
++++. .++.||..|.++|++...+... ..+ ..-..+|..+..- ...+ ...++.-....+.+|.+.......
T Consensus 34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~-~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE-DLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC-cceEEEecCCEEEEEEEEecCCCc
Confidence 44444 7999999999999998643311 111 2245678777632 2222 233444556777777763221110
Q ss_pred eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC----C-CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcC
Q 001258 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1113)
Q Consensus 548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1113)
.++.. ..+. .++..+-......+++-| . ..++.+-+.||.+.+|+-+.-.....+.. .--..
T Consensus 112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPg 178 (418)
T PF14727_consen 112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPG 178 (418)
T ss_pred ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCc
Confidence 00000 0000 000000011111122211 1 24677788999999999766544444432 12234
Q ss_pred eEEECCCCCEEEEEECCCcEEEEEc
Q 001258 623 RIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 623 ~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
.+.|.+....+++++.+..+.-|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 6899998899999998888877754
No 463
>PHA02790 Kelch-like protein; Provisional
Probab=86.71 E-value=25 Score=41.02 Aligned_cols=53 Identities=13% Similarity=-0.048 Sum_probs=28.4
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----CcEEEEEcCCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDG 650 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 650 (1113)
|.+.+||..+++....-..... ....-+..-++++.++|+.+ ..+..||..++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 3577889877665433221111 11122223367788888754 34667776655
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.68 E-value=24 Score=38.73 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=89.4
Q ss_pred CCCeeEEEEecCCCcEEEEEecCCc------EEEEEccc--c--eee-----eeeccccc--------CeEEEEEcCCCC
Q 001258 859 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN 915 (1113)
Q Consensus 859 ~~~i~~l~~s~~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 915 (1113)
-+.+..+.+.+.++.+++ .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 345778888863554444 555666 55555443 1 001 11111112 234788888888
Q ss_pred EEEEEeCC------CcEEEEeCCCCccccccccccCC---------CCCCCCCCCceEEEccCCcEEEEE------cCC-
Q 001258 916 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET- 973 (1113)
Q Consensus 916 ~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~spdg~~l~~~------~d~- 973 (1113)
++++.=.+ ..|+.++.+ +...... .++. ...........++++|||+.|++. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88877666 778888866 3332211 1111 112233567899999999955542 222
Q ss_pred -e-------EEE--EeCCc-cceeecccc--CC-----CCCCeeEEEECCCCCEEEEEe-----CCCcEEEEecC
Q 001258 974 -Q-------LAI--FETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1025 (1113)
Q Consensus 974 -~-------v~v--~d~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~dg~~l~s~~-----~Dg~v~vwd~~ 1025 (1113)
. +++ ||..+ +.....+.. +. ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 444 45544 323333322 11 357889999999999876421 23445555443
No 465
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.57 E-value=36 Score=40.18 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=54.2
Q ss_pred EEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccc-cccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258 908 LAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~ 981 (1113)
++|-|.|..++|-+.||. |..+.-+. .....+ +..... ......+|......++++....+.+|...
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~lr~~~d-----Ek~~~~~wn~~s~vlav~~~n~~~lwttk 324 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDLRVGCD-----EKAFLENWNLLSTVLAVAEGNLLKLWTTK 324 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccccCCch-----hhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence 789999999999886653 55555433 111111 111111 23466778777777777888899999877
Q ss_pred ccceeeccccCCCCCCeeEEEECCCC
Q 001258 982 KLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
+........ ..-..+.-+.|.|..
T Consensus 325 NyhWYLK~e--~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 325 NYHWYLKVE--RQIPGISYVKWHPEE 348 (1243)
T ss_pred ceEEEEEEe--ecCCCcceeeecccc
Confidence 654332221 113345556777643
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.37 E-value=2.8 Score=49.53 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCC--CcccccccccCCCcceEEEEEc--CCCCeEEEEeCCCeEEEE
Q 001258 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSLFGVAYSRHIVQIY 447 (1113)
Q Consensus 372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~las~~~d~~i~iw 447 (1113)
.+|+.+..||.|.+|.+++=....... .-+.... .......+...-...++.+++. ...++||++++...|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 378888999999999874311000000 0000000 0000001122234589999998 888999999988888888
Q ss_pred EccCCceeeeeeeeecccCCeeEEEEcCCCC----eeEEEEecCCCcEEEEeC
Q 001258 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA 496 (1113)
Q Consensus 448 d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~----~~~l~s~s~d~~i~iwd~ 496 (1113)
-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654211111101113667899999987651 136888899999999887
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=11 Score=47.73 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=42.2
Q ss_pred ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 956 ~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
.+..+......+.....+.+.+|+.........+...++. .++++..++++-.||.+..||...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 3344444444444444555556655544444444332222 288999999999999999999999866
No 468
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.25 E-value=1.2e+02 Score=39.88 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=89.3
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
|...++.|.-+++|++ +=. .|+.++.||..+. .|... -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceEe
Confidence 6677788888888886 322 6888888887754 23210 011223555666666777766
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC------ceee--Eeecc
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH 508 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~------~~~~--~~~~h 508 (1113)
.++. .|-|+..+..-. .....|.+...+++|.- .+.++-...++.+|++... ++.. .+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 144555544221 12346777888899983 3667777777899998753 1112 22333
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.....+|.++ ++ .|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 3345555543 32 688888899888777654
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.11 E-value=3.9 Score=41.60 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=52.4
Q ss_pred EcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc-------CCCcceEEEEEcCCCCeEEEE
Q 001258 366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 366 ~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las~ 438 (1113)
+..++.+ |.+-+.+|.+++||+.+++.+... ..+ ..++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si-----------~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSI-----------APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccH-----------HHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 5567886 666688999999999998876531 111 11222 466789999999999888776
Q ss_pred eCCCeEEEEEccCCc
Q 001258 439 YSRHIVQIYSYHGGD 453 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~ 453 (1113)
+ +|....|+..=+.
T Consensus 85 s-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGC 98 (219)
T ss_pred e-CCCEEEeccccce
Confidence 5 5778888876543
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.35 E-value=37 Score=33.84 Aligned_cols=148 Identities=12% Similarity=0.139 Sum_probs=85.3
Q ss_pred cEEEEEecCCcEEEEEcc--cceeeeeecccccCeEEEEEcCCCCEEEEEeCC---C---cEEEE-eCCCCccccccccc
Q 001258 873 NIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S---QLCVW-SSDGWEKQKNRFLQ 943 (1113)
Q Consensus 873 ~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D---~---~v~iw-d~~~~~~~~~~~~~ 943 (1113)
..|+.+.....|.+|++. ..+.+..|..- +.|..+.++..|++|+|-=.+ . .+|+| |.+...........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999998 34566666644 889999999999999986332 2 45655 22211000000000
Q ss_pred cCCC------------------CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccce-ee-----ccc---cCCC-C
Q 001258 944 IPTG------------------RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S 995 (1113)
Q Consensus 944 ~~~~------------------~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~-~~-----~~~---~~~h-~ 995 (1113)
...| ..+....+.+++..|-..-|+++.++.+.+|.+..... .. .|. ...| +
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 0000 00111356788888877778888899999998765444 11 111 0112 2
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 996 APITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
-.+..++|. +.|+|..+ +..++|+.+
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 234555553 55777665 666777665
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.11 E-value=4.1 Score=44.14 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=97.6
Q ss_pred CCCCccEEEEecCCCEEEEEeCCeEEEEECCCCcee-eee-cCCCC----Cee-EEEEecCCCcEEEEEecCCcEEEE-E
Q 001258 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 888 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~-~~~-~~~~~----~i~-~l~~s~~d~~~la~g~~dg~v~iw-d 888 (1113)
....+..+-..|||+.+.+-+..++.|+++.+...- +++ ....+ .|+ .+..-. +|.-|.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456678889999999999988899999998764332 111 11111 122 222223 66777889999988877 4
Q ss_pred cccc-e----eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 889 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 889 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++..+.....+.. ..... ...+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~------~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERA------YQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhh------hcCcceeeeCcc
Confidence 4332 1 11222222233443333334456777788888887765442211 11111 124678999999
Q ss_pred CcEEEEEcCCeEEEEeCCccce
Q 001258 964 QIHFLVVHETQLAIFETTKLEC 985 (1113)
Q Consensus 964 g~~l~~~~d~~v~v~d~~~~~~ 985 (1113)
+.++++-..++++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998899999998876543
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=19 Score=39.51 Aligned_cols=141 Identities=7% Similarity=0.071 Sum_probs=84.1
Q ss_pred eEEEEecCCCcEEEEEecCCcEEEEEccc--ceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~ 939 (1113)
+.+-|.. .++.|+ +...|.+.=|-+.. ......+ ....++|.++.||+|.+.||.--.|.+|.+++....+....
T Consensus 26 ngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 4455543 333333 33445555565442 1222222 33567999999999999999999999999999855432211
Q ss_pred cccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
.. ..+......|....|+.. .-+|...+..+.+|.....+ .++.. ..|...|.-..|.++-+.++.
T Consensus 104 ~~----~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV--ks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 104 YT----QECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV--KSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred HH----HHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh--hhcccCccEEEEccccceEee
Confidence 11 111111235788888877 56666667777777654322 22222 255777888888888776443
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.24 E-value=84 Score=36.01 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=47.2
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
..+|.++.+..+|.+. +|+.|| +..||..+++.++.. .......|.++.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3478889998888554 466777 778888887765421 112335788888888887 66676554 66666443
No 474
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.57 E-value=37 Score=39.51 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=63.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc--------------CC
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET 973 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~--------------d~ 973 (1113)
+...++|.+++..+ ..++.+|+... .... .....+.. ..-..+..-|+|.+|+.+. +.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence 66678888887665 66777777652 1111 11111100 0124577788999888754 23
Q ss_pred eEEEEeCCccceeeccccCCC-------------------------CCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCC
Q 001258 974 QLAIFETTKLECVKQWVPRES-------------------------SAPITHATFSC-DSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h-------------------------~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
.|..+| .+|+.+..|....| -..+.++.+.+ ++.+|+++=.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 466667 77777666543222 13478899988 5556666555568999999999
Q ss_pred ceeeecCCC
Q 001258 1028 KLRCRINPS 1036 (1113)
Q Consensus 1028 ~~~~~~~~~ 1036 (1113)
+....+..+
T Consensus 304 ~i~Wilg~~ 312 (477)
T PF05935_consen 304 KIKWILGPP 312 (477)
T ss_dssp -EEEEES-S
T ss_pred cEEEEeCCC
Confidence 998887743
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.56 E-value=35 Score=31.07 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecC--------CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVG--------SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-- 430 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 430 (1113)
|..-.|.....- |++++..|.|.|.+.. ....+. +-.-...|++++-.+
T Consensus 1 VaiGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--------------------~LNin~~italaaG~l~ 59 (136)
T PF14781_consen 1 VAIGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGRQDSDIS--------------------FLNINQEITALAAGRLK 59 (136)
T ss_pred CeEEEeCCCcee-EEEEecCCEEEEECCCccccccccccCcee--------------------EEECCCceEEEEEEecC
Q ss_pred ---CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 431 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
+...|+.|+... +..||+.....+- .+.-.+.|+++.+-.-+. ..-++..+.+..|.-+|.+-.+...+..
T Consensus 60 ~~~~~D~LliGt~t~-llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 60 PDDGRDCLLIGTQTS-LLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CCCCcCEEEEeccce-EEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Q ss_pred c
Q 001258 507 G 507 (1113)
Q Consensus 507 ~ 507 (1113)
+
T Consensus 135 g 135 (136)
T PF14781_consen 135 G 135 (136)
T ss_pred c
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=98 Score=38.27 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=116.5
Q ss_pred EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 836 (1113)
.++..-|+.+.+|+.+|.+.+|.+........... ..........+ +..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~----------~~~~~~~~~~~----~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL----------VTETVKFEKEF----SKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh----------hcchhHHhhhh----ccchhHHHhhcchhcchhee
Confidence 34555678899999999999998764322111000 00001111111 35677777777777788888
Q ss_pred eCCeEEEEECCCCceeeeecCCCCCeeEEEEec--C-CC--cEEEEEe-cCC-cEEEEEcccceeeeeecccccCeEEEE
Q 001258 837 SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP--Q-DN--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1113)
Q Consensus 837 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~--~-d~--~~la~g~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1113)
+|+.|.++++.+.+.... ..+-..+...++.- . .+ .+.+... ... ....|+-..+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 899999999877655211 11111111111110 0 11 1222222 111 222233222222222112222233333
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeec-
Q 001258 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ- 988 (1113)
Q Consensus 910 ~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~- 988 (1113)
| .+..+.++-.+....+|.-.++............. ..-..+.--.++..++.+.|+...+-|.......+.
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34455555444444555444432111111111000 112344455667677777777777777443221111
Q ss_pred cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+.- .....++.+ +.-|+++-+ ++.|.||+..++.++.++
T Consensus 238 l~w---s~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 000 111122221 344666655 669999999999887666
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=14 Score=46.27 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=98.8
Q ss_pred CCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258 344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1113)
Q Consensus 344 ~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 423 (1113)
..++|..+.....|...=+.|-+=|.=.+.-+ +.|+.+.+|+++++..... +.+-...|
T Consensus 64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtI 122 (1311)
T KOG1900|consen 64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTI 122 (1311)
T ss_pred cccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence 45566666666666665566666665443333 4689999999998655442 33333344
Q ss_pred EEEEE--------cCCCCeEEEEeCCCeEEEEEccCCceeeee------eeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258 424 NRVIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1113)
Q Consensus 424 ~~l~~--------spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 489 (1113)
..|.. -|.=++|..-..--.|.|+-+.-.+..... .++.-..-.|+|+....+|+ +|.+ |.||
T Consensus 123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg 199 (1311)
T KOG1900|consen 123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG 199 (1311)
T ss_pred eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC
Confidence 44443 233334444444445666654422211111 12222345789999888888 4554 4555
Q ss_pred cEEEEeCC----CC---c-e----------------eeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 490 TIKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 490 ~i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.+|.+. +| + | +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+..
T Consensus 200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 455442 21 1 1 11122 467789888865443 6899999999999999976
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.14 E-value=5.9 Score=38.67 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.1
Q ss_pred cceEEEEEcCCC------CeEEEEeCCCeEEEEEccC
Q 001258 421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 451 (1113)
Q Consensus 421 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~ 451 (1113)
..|.+++|||-| -+||+...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3688889999999998664
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=11 Score=47.11 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=92.6
Q ss_pred ecCCcEEEEEcccceeeeeecccccCeEEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCcccc--ccccccCCCC
Q 001258 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQK--NRFLQIPTGR 948 (1113)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~L~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~~~ 948 (1113)
+.|..+.+|+..++...+.+.+-+..|..+..- |.=++|...+.--.|.++-+.-.+... ........ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 457889999999988888888877788777643 233444444445557776554332211 11111100 0
Q ss_pred CCCCCCCceEEEccCCcEEEEEcCCeEEE--EeCCcc---c-e-------------eec-ccc-CCCCCCeeEEEECCCC
Q 001258 949 TPTAQSDTRVQFHQDQIHFLVVHETQLAI--FETTKL---E-C-------------VKQ-WVP-RESSAPITHATFSCDS 1007 (1113)
Q Consensus 949 ~~~~~~i~~~~~spdg~~l~~~~d~~v~v--~d~~~~---~-~-------------~~~-~~~-~~h~~~v~~l~~s~dg 1007 (1113)
......|.++....+|+.+.+|.||.+.- |....+ + | +.. +.. ..+..+|..+++....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 01113578888889999999998885442 221111 1 1 000 111 2567799999999888
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 001258 1008 QLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 1008 ~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
..+++-+.-|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.76 E-value=11 Score=38.31 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=48.2
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCC-------CcccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA-------GVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~-------gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
+..++.+|++.+.+|.+++||+.+++.+..-..-..+-. .....|.. +... .+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~--~~lt-~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITS--CSLT-SNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEE--EEEc-CCCCEEEEEe-CCCEEEec
Confidence 445788999999999999999999887754421111111 22233443 3333 4677777655 68889998
Q ss_pred ccCCC
Q 001258 1076 PLESE 1080 (1113)
Q Consensus 1076 ~~~~~ 1080 (1113)
..=+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 76654
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.71 E-value=39 Score=42.99 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcce
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~ 393 (1113)
......++|+|... ++|.|+..|.|.++-...-+.
T Consensus 35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence 34667889999998 799999999999998654443
No 482
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.75 E-value=1e+02 Score=35.30 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=79.4
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
+.+.-..+|.++.|.-.|. +-.|+.|| +..+|..+++.+.... ......|..+.-+-.|
T Consensus 159 r~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg 217 (671)
T COG3292 159 RPLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG 217 (671)
T ss_pred cccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC
Confidence 3344678899999999997 44566665 5577877777765310 0111356666666555
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccC--
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE-- 509 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~-- 509 (1113)
+ |-+|+.+| |.+.+..+.+..... ..--.+.|..+.-..+|. +-.|+..|..+ .....+...... +.|.
T Consensus 218 ~-LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~ 289 (671)
T COG3292 218 R-LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGV 289 (671)
T ss_pred c-EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcc
Confidence 4 45566666 777776663221110 001233455555445554 45555555332 233333332222 2222
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
+.|.++ .-+.+| -+-+++.+|.+++=
T Consensus 290 S~vnsL--~~D~dG-sLWv~t~~giv~~~ 315 (671)
T COG3292 290 STVNSL--WLDTDG-SLWVGTYGGIVRYL 315 (671)
T ss_pred ccccce--eeccCC-CEeeeccCceEEEe
Confidence 223333 234444 36666666655544
No 483
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.74 E-value=95 Score=34.81 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc---cC
Q 001258 829 NDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS---KR 904 (1113)
Q Consensus 829 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~---~~ 904 (1113)
+|+.++...++.+..+|..+++......... ..+..-..-. ++ .+..++.+|.+.-.+..+|+.+-....-. ..
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-Cc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 7875555558889999998888887776555 1122222222 33 33334467888888888887765433211 11
Q ss_pred eEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCC--CCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258 905 ITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~spdg~~l~~~~d~~v~v~d~ 980 (1113)
+..-....++ .+..+.. ++.+.-.|..++............+.... ...+..-...-++...+.+.++.+...+.
T Consensus 189 ~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 189 IYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA 267 (370)
T ss_pred cccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence 1111112233 3333333 55566666666654433222222222110 00111112222333334456777888899
Q ss_pred Cccceeecccc
Q 001258 981 TKLECVKQWVP 991 (1113)
Q Consensus 981 ~~~~~~~~~~~ 991 (1113)
.+++.+..+..
T Consensus 268 ~~G~~~W~~~~ 278 (370)
T COG1520 268 DTGELIWSFPA 278 (370)
T ss_pred CCCceEEEEec
Confidence 98888777653
No 484
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.69 E-value=91 Score=34.54 Aligned_cols=121 Identities=10% Similarity=0.179 Sum_probs=72.7
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
....++|.++.||+|.+.||+--.+++|.+++....+... ...+.+.....|....|+..-. ++--+. .-+-+|-
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e---~A~i~~-~G~e~y~ 138 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE---IAFITD-QGIEFYQ 138 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee---EEEEec-CCeEEEE
Confidence 3456699999999999999999999999999985433221 1112223345688889987643 333332 2355555
Q ss_pred CCC-CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC
Q 001258 496 ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1113)
Q Consensus 496 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 541 (1113)
... .+.++..+.|...|+-..|.+..+--+|.++-..+++.=+.++
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 432 3345555667777777776665542233333234444434333
No 485
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.63 E-value=22 Score=41.30 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=41.9
Q ss_pred CccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1113)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1113)
.+...|.+..++.+..||+|++|+.........+.. ..+-..+.|...| +++..+|..+.-|.-.
T Consensus 19 aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 19 AIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheeecc
Confidence 344457788999999999999999875443333221 1223455666666 6666777666666543
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.52 E-value=1.5e+02 Score=37.00 Aligned_cols=174 Identities=11% Similarity=0.149 Sum_probs=103.0
Q ss_pred CCCCccEEEEe---c----CCCEEEEEeCCeEEEEECCCCc---------------eeeeecC---CCCCeeEEEEecCC
Q 001258 817 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTFK---------------TMATFMP---PPPAATFLAFHPQD 871 (1113)
Q Consensus 817 ~~~~v~~l~~s---~----~~~~l~~~sdg~i~vwd~~~~~---------------~~~~~~~---~~~~i~~l~~s~~d 871 (1113)
...+|..|+|. . ..++|++-....+.|+...-.+ .+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46778888887 2 2347777777778888722111 1122221 12346678888877
Q ss_pred CcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001258 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1113)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1113)
.+.||+.+..|...||++..... .+. .... +.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~~~----------~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SNLR----------LSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCC-ccee----------eccCCCccc-cCCCccc-----------------
Confidence 77888888888888888721110 000 1111 111122222 2222210
Q ss_pred CCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEeCCCcEEEEecCC
Q 001258 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 952 ~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~vwd~~~ 1026 (1113)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++.. +++.- ....|...++..
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 13357888999999999999999999999887644233234467899999888722 22222 236788888876
No 487
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=81.34 E-value=6.1 Score=34.61 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHH
Q 001258 2 SSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1113)
Q Consensus 2 ~~~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (1113)
..+.+|=+..|.+|++..| +.+.+++|.||++. ...|- +.++.|....... ..-...+.
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rLd---------~ii~~lg~~~~~~-------~~~~~~~~ 92 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRLD---------KIIEKLGYEEDEE-------EEEEDERK 92 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHHH---------HHHHHhCCCCCcc-------cccchhHH
Confidence 3466777888999999999 89999999999996 22222 2223333211111 11234577
Q ss_pred HHHHHHhcCC--HHHHHHHHH
Q 001258 80 KYLEALDKHD--RAKAVEILV 98 (1113)
Q Consensus 80 ~~lell~~~~--~~~a~~~l~ 98 (1113)
..|+.|+.|+ .++|++.|+
T Consensus 93 ~IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 93 EILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHHcCCCCHHHHHHHhC
Confidence 8899999998 667887763
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.20 E-value=42 Score=35.52 Aligned_cols=93 Identities=10% Similarity=0.165 Sum_probs=58.0
Q ss_pred CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe------CCCeEEEEEccCCce
Q 001258 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 454 (1113)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~i~iwd~~~~~~ 454 (1113)
..|++||..+.+-.. .-.+-.+.|++|.|..+.++++.|. ....+..||..+...
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 468999988765432 2234567899999997777777774 355688999988653
Q ss_pred eeeeeeeec-----ccCCeeEEEEcCCCCeeEEEEec-CCC--cEEEEeC
Q 001258 455 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDA 496 (1113)
Q Consensus 455 ~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s-~d~--~i~iwd~ 496 (1113)
. .+.+ -.++|..+.+..++..-+.+.|. .++ .|..||=
T Consensus 77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 2 2322 24688888875433321444443 333 4666663
No 489
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.95 E-value=97 Score=38.50 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=46.7
Q ss_pred CCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecc----ccC---------C----CCCCeeEEEECCCCCEEEEEeC
Q 001258 954 SDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW----VPR---------E----SSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~----~~~---------~----h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
.|.++....-+.+++. -.||.|.++|..+.+.+... ... | +...+..++|||.+..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 3455655566777776 49999999999888665444 110 0 1224456889999999999999
Q ss_pred CCcEE
Q 001258 1016 DATVC 1020 (1113)
Q Consensus 1016 Dg~v~ 1020 (1113)
||.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.91 E-value=37 Score=38.11 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=61.9
Q ss_pred ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC---CEEEEEecC
Q 001258 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDD 595 (1113)
Q Consensus 519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d 595 (1113)
.++.|..++-.|.+|.+.++=.+..+.-..+......|.|-.++-+ .++|.....-.+.-.+|+|+. ..|+.-+.|
T Consensus 111 ~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd 189 (741)
T KOG4460|consen 111 LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD 189 (741)
T ss_pred ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence 3456678888888998777643433333344444444555555444 355555555566678899975 778889999
Q ss_pred CcEEEEECCCCceEEEE
Q 001258 596 FSIKFWDMDSVQLLTSI 612 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~ 612 (1113)
+.|++||+...+.+...
T Consensus 190 nviRiy~lS~~telylq 206 (741)
T KOG4460|consen 190 NVIRIYSLSEPTELYLQ 206 (741)
T ss_pred cEEEEEecCCcchhhcc
Confidence 99999999877666443
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.94 E-value=41 Score=38.32 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC------cEE
Q 001258 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ------IHF 967 (1113)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg------~~l 967 (1113)
.+..+...-...+.|+|.|||++|++--..|.|++++-.++.......+........ ......++++|+- .+|
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCccccCCCcEE
Q ss_pred EEEc-----------CCeEEEEeCCcc-------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC
Q 001258 968 LVVH-----------ETQLAIFETTKL-------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017 (1113)
Q Consensus 968 ~~~~-----------d~~v~v~d~~~~-------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1017 (1113)
.++. ...|.-|.+... +.+..-.+......-..|.|.|||.+.++.++.+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.57 E-value=47 Score=38.63 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=69.7
Q ss_pred EEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCC-CCeeEEEECCCCCEEEEEeC-------------CCcEEEEe
Q 001258 958 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACFL-------------DATVCVFS 1023 (1113)
Q Consensus 958 ~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~-------------Dg~v~vwd 1023 (1113)
+..-++|.+++... ..+..+|+. |+.+..+...... .-=..+...|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888887654 778888875 5555554432211 11245677899999887772 12366667
Q ss_pred cCCCceeeecCCCcccC-C-----------------CcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccC
Q 001258 1024 AANLKLRCRINPSAYLP-A-----------------GVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1085 (1113)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~-~-----------------gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1085 (1113)
.+|+.+..+.....+. . +.....+.-++.+.+.++.+++|+-.-..|...|..+++-.|.+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 7787777665544331 0 11222334468888877777777766678999998899977777
Q ss_pred CCCC
Q 001258 1086 PPPV 1089 (1113)
Q Consensus 1086 ~~~~ 1089 (1113)
..+-
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 6663
No 493
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.09 E-value=0.45 Score=51.85 Aligned_cols=120 Identities=21% Similarity=0.268 Sum_probs=86.7
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
+.-.+.-++....++|.-+|..+++.+-..+.+.+||+.+..... ...-..|... -+.|++
T Consensus 67 ~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-----------------LE~gg~~s~s--ll~wsK 127 (615)
T KOG2247|consen 67 VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-----------------LESGGTSSKS--LLAWSK 127 (615)
T ss_pred eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-----------------HhccCcchHH--HHhhcc
Confidence 333444566777888888998777778889999999998653221 0011122222 388999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
.+..++.+-..|.+.|++..+.+... ....|..++++++|.+.+. .+.++.|..+.+-.
T Consensus 128 g~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 128 GTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred CCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 99999999999999999988766543 3334999999999999886 77888777665444
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.91 E-value=55 Score=38.72 Aligned_cols=130 Identities=13% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCceEEEccCCcEEEE-EcCC-----eEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 954 SDTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~-~~d~-----~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
.-..+.|-|+|..+++ +.|+ .|..+..+... ...+.. .+-...+..++|.-....++.+ ....|.+|...+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-HGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-HGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcc-cCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 3356899999999998 5444 46666644322 222211 1224456777787666655543 467899998876
Q ss_pred CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccCCCCCCCCCCC
Q 001258 1027 LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTS 1095 (1113)
Q Consensus 1027 ~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1095 (1113)
.....+.. -..| + +. .+.|+|...+.|...+... |..-.+......-....|+|+|.+.
T Consensus 326 yhWYLK~e--~~ip-~----~s--~vkwhpe~~nTl~f~d~~~-I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 326 YHWYLKVE--RQIP-G----IS--YVKWHPEEKNTLLFRDGER-ILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred eEEEEEEe--ecCC-C----cc--eeeeccccCcEEEEecCCe-EEEEEeehhhhcCCcccCccCCceE
Confidence 65443322 1122 1 11 3789997766665543333 3333333333333455677877653
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.81 E-value=70 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=25.0
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCC
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS 605 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 605 (1113)
..+..+...+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488889999999999999999999999975
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.70 E-value=1.1e+02 Score=33.58 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=36.0
Q ss_pred cCCcEEEEE-c-----CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc----EEEEecCCCce
Q 001258 962 QDQIHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT----VCVFSAANLKL 1029 (1113)
Q Consensus 962 pdg~~l~~~-~-----d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~----v~vwd~~~~~~ 1029 (1113)
-+++..+.+ . ...+..||+.+.+....-.... .......+...++++.+.|+.++. +.+||..+.+-
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 355555553 2 1368889988766433211111 112222333446777777776643 56788877654
No 497
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=78.58 E-value=32 Score=38.40 Aligned_cols=144 Identities=9% Similarity=0.084 Sum_probs=82.6
Q ss_pred CCcEEE-EEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC--------CEEEEEeCCCcEEEEeCCC-Ccccccc
Q 001258 871 DNNIIA-IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL--------NVLVSSGADSQLCVWSSDG-WEKQKNR 940 (1113)
Q Consensus 871 d~~~la-~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~L~s~s~D~~v~iwd~~~-~~~~~~~ 940 (1113)
+..+|. .|.....++--|+.-|+.+..+.-|.+- -+.|.|+. +.|+-.|..+ |.-.|.+- +.+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~-- 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIK-- 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCcee--
Confidence 555544 3555567888889999999999988775 46777643 4566555444 43334322 11110
Q ss_pred ccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcE
Q 001258 941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1113)
Q Consensus 941 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v 1019 (1113)
.......... ..-.+.. .....++|+ +..|.|++||.-....-..+. +-...|..+..+.+|+++++.+ ..++
T Consensus 553 v~esKdY~tK--n~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 553 VVESKDYKTK--NKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eeeehhcccc--ccccccc-cccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEee-cceE
Confidence 0010000000 1112222 234456666 577899999975433322222 4477899999999999988776 4456
Q ss_pred EEEecC
Q 001258 1020 CVFSAA 1025 (1113)
Q Consensus 1020 ~vwd~~ 1025 (1113)
-+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666653
No 498
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.53 E-value=99 Score=33.09 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=82.5
Q ss_pred cEEEEeCCCCceeeEeec------cCcCEEEEeeeecCC----ceEEEEEecCCcEEEEEcCCCCCeeeeeCC-------
Q 001258 490 TIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKEN----IQFIFSTALDGKIKAWLYDNLGSRVDYEAP------- 552 (1113)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------- 552 (1113)
.|.+||+.+++.++++.- ..+.+..+.+..... +-..++-+..+-|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 678899999988877642 245567777655332 223344444567999999875543322111
Q ss_pred ------------CCceEEEEEcc---CCCeEEe----------------------------------ccccCceeEEEec
Q 001258 553 ------------GRWCTTMAYSA---DGTRTYQ----------------------------------GFRKRSLGVVQFD 583 (1113)
Q Consensus 553 ------------~~~v~~~~~s~---~~~~~~~----------------------------------~~~~~~i~~~~~~ 583 (1113)
...+..++.+| +++.+|. |........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 11255666655 5543321 1112244557788
Q ss_pred CCCCEEEEEecCCcEEEEECCCC---ceEEEEccCCC-CCCcCeEEECC--CCCEEEEE
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGG-LPASPRIRFNK--DGCLLAVS 636 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~ 636 (1113)
++|..+++--..+.|..|+.... +....+..... ...+..+.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 88888888889999999998761 12222222222 34556777777 66555444
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.97 E-value=14 Score=35.98 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.1
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001258 903 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 903 ~~V~~l~~s~d~------~~L~s~s~D~~v~iwd~~~ 933 (1113)
..|.+++|||-| .+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999854 5788999999999998765
No 500
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.33 E-value=93 Score=32.13 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=136.0
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
.....-..|+-.|||. +-.+++..|.|---|..+|+.... -.+....-..|..-|||..-
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~y-------------------pLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETY-------------------PLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCccccceecCCCCCceEEE-------------------ecCCCCCCceEEECCCCCee
Confidence 3566778899999998 578888888888888888876541 23344455677888888877
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC---------CCcEEEEeCCCCceeeEee
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~ 506 (1113)
++=+.. -|.-.|-++.+..+-....+.-........|.+.|. +-.++.. .+.|++|+...|.
T Consensus 119 itd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~--lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------ 189 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN--LWFTGQIGAYGRLDPARNVISVFPAPQGG------ 189 (353)
T ss_pred EecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCcc--EEEeeccccceecCcccCceeeeccCCCC------
Confidence 664433 455666666654432223333455788899999998 5566542 2345555543322
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 586 (1113)
.-..||. .++|..-++.-.+..|-..|..+.... .+..+ +.. .....-+-.+|.+
T Consensus 190 ----gpyGi~a--tpdGsvwyaslagnaiaridp~~~~ae-v~p~P-----------~~~-------~~gsRriwsdpig 244 (353)
T COG4257 190 ----GPYGICA--TPDGSVWYASLAGNAIARIDPFAGHAE-VVPQP-----------NAL-------KAGSRRIWSDPIG 244 (353)
T ss_pred ----CCcceEE--CCCCcEEEEeccccceEEcccccCCcc-eecCC-----------Ccc-------cccccccccCccC
Confidence 2233443 355566666555666665555443211 11111 110 0001112223344
Q ss_pred CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
..-++-...+.+..+|..... -..+...+....-.++.....++...+-...|.|.-+|..+.
T Consensus 245 ~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 445555566777778776544 334444444445566666666666665555566666665543
Done!