Query 001258
Match_columns 1113
No_of_seqs 831 out of 4565
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 8.6E-67 2.9E-71 632.6 72.0 566 352-1075 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 2.5E-65 8.6E-70 619.7 68.5 576 357-1077 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 7.2E-61 2.5E-65 580.6 68.9 540 353-1025 54-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.6E-60 8.9E-65 575.8 68.8 524 353-1023 52-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 7E-61 2.4E-65 634.4 65.7 596 353-1077 610-1248(1249)
6 1pgu_A Actin interacting prote 100.0 2.2E-58 7.6E-63 563.9 59.3 562 356-1078 16-614 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 3.4E-57 1.2E-61 567.0 57.6 638 352-1088 11-795 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-56 4.3E-61 593.7 64.2 568 415-1081 610-1210(1249)
9 1pgu_A Actin interacting prote 100.0 3.7E-54 1.3E-58 526.5 60.6 523 350-1026 55-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-51 4.3E-56 516.6 62.2 593 351-1067 51-818 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-45 5E-50 466.0 58.9 465 355-1022 10-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 6.6E-44 2.2E-48 450.9 51.7 466 415-1075 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.3E-43 4.6E-48 406.7 41.2 306 354-780 104-409 (410)
14 1vyh_C Platelet-activating fac 100.0 1.8E-39 6.3E-44 372.3 39.9 306 416-932 104-410 (410)
15 2pbi_B Guanine nucleotide-bind 100.0 1.8E-38 6.2E-43 356.1 44.0 293 353-779 59-354 (354)
16 1got_B GT-beta; complex (GTP-b 100.0 1.9E-38 6.4E-43 354.5 43.5 290 353-779 50-340 (340)
17 3ow8_A WD repeat-containing pr 100.0 4.4E-38 1.5E-42 347.5 41.2 289 415-890 27-320 (321)
18 3ow8_A WD repeat-containing pr 100.0 5.8E-38 2E-42 346.4 41.1 287 355-780 29-319 (321)
19 1r5m_A SIR4-interacting protei 100.0 4.1E-38 1.4E-42 365.0 41.0 339 417-932 42-424 (425)
20 3frx_A Guanine nucleotide-bind 100.0 1.4E-37 4.6E-42 343.8 41.4 300 355-782 14-317 (319)
21 1got_B GT-beta; complex (GTP-b 100.0 2.1E-37 7.2E-42 345.9 42.4 286 415-888 50-340 (340)
22 4g56_B MGC81050 protein; prote 100.0 5.3E-38 1.8E-42 352.6 36.0 313 716-1080 18-345 (357)
23 2ynn_A Coatomer subunit beta'; 100.0 2.5E-37 8.5E-42 339.3 40.1 251 353-650 7-260 (304)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-37 9.4E-42 345.6 39.2 208 415-649 10-225 (345)
25 3iz6_a 40S ribosomal protein R 100.0 9.8E-38 3.3E-42 354.4 35.6 299 354-782 62-375 (380)
26 4g56_B MGC81050 protein; prote 100.0 5.9E-38 2E-42 352.2 32.8 322 362-892 9-344 (357)
27 3iz6_a 40S ribosomal protein R 100.0 1E-37 3.5E-42 354.2 35.1 299 415-893 61-377 (380)
28 2ynn_A Coatomer subunit beta'; 100.0 1.1E-36 3.7E-41 334.2 41.4 289 459-933 7-302 (304)
29 1r5m_A SIR4-interacting protei 100.0 5.8E-37 2E-41 355.3 40.5 360 351-890 38-424 (425)
30 3frx_A Guanine nucleotide-bind 100.0 1.6E-36 5.3E-41 335.3 41.6 214 415-650 12-228 (319)
31 2pm9_A Protein WEB1, protein t 100.0 2E-38 6.8E-43 366.6 26.5 332 421-933 13-414 (416)
32 4gqb_B Methylosome protein 50; 100.0 8.3E-37 2.8E-41 339.5 38.2 295 750-1080 29-333 (344)
33 2pbi_B Guanine nucleotide-bind 100.0 2.6E-36 9E-41 338.5 42.2 289 415-888 59-354 (354)
34 4gqb_B Methylosome protein 50; 100.0 5.1E-37 1.8E-41 341.2 35.3 257 357-650 29-290 (344)
35 3vl1_A 26S proteasome regulato 100.0 1.2E-36 4.2E-41 351.9 37.9 355 359-848 57-419 (420)
36 2xzm_R RACK1; ribosome, transl 100.0 5.8E-36 2E-40 334.9 40.5 216 415-649 16-244 (343)
37 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.1E-40 325.6 44.1 250 353-650 18-269 (312)
38 2pm9_A Protein WEB1, protein t 100.0 1.1E-37 3.8E-42 360.3 24.9 367 356-892 10-415 (416)
39 1gxr_A ESG1, transducin-like e 100.0 7.7E-36 2.6E-40 333.9 38.6 324 357-890 8-336 (337)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.5E-36 1.9E-40 335.0 37.0 300 750-1081 14-338 (345)
41 4ery_A WD repeat-containing pr 100.0 4.4E-35 1.5E-39 323.4 42.9 291 415-890 18-311 (312)
42 1erj_A Transcriptional repress 100.0 3.3E-35 1.1E-39 335.2 42.0 303 418-933 62-389 (393)
43 1erj_A Transcriptional repress 100.0 2.7E-35 9.4E-40 335.9 40.9 275 350-650 56-342 (393)
44 2j04_B YDR362CP, TAU91; beta p 100.0 8E-37 2.7E-41 356.5 27.6 355 348-933 123-517 (524)
45 1gxr_A ESG1, transducin-like e 100.0 2.1E-35 7E-40 330.4 37.5 320 419-931 8-335 (337)
46 2xzm_R RACK1; ribosome, transl 100.0 1.8E-34 6.3E-39 322.7 42.9 252 354-650 17-286 (343)
47 3vl1_A 26S proteasome regulato 100.0 2.3E-35 8E-40 341.2 36.7 346 421-933 57-419 (420)
48 2hes_X YDR267CP; beta-propelle 100.0 6.2E-35 2.1E-39 324.2 38.1 252 354-650 10-281 (330)
49 3v7d_B Cell division control p 100.0 2E-34 7E-39 337.9 43.2 342 415-931 116-461 (464)
50 4aow_A Guanine nucleotide-bind 100.0 2.2E-34 7.6E-39 322.4 41.0 307 351-783 30-338 (340)
51 3gre_A Serine/threonine-protei 100.0 2.6E-35 8.9E-40 342.6 34.0 373 365-930 34-437 (437)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.7E-34 1.3E-38 333.4 43.5 317 415-933 113-442 (445)
53 1k32_A Tricorn protease; prote 100.0 1.8E-33 6.1E-38 362.2 54.2 518 357-1080 13-639 (1045)
54 4aow_A Guanine nucleotide-bind 100.0 4.6E-34 1.6E-38 319.9 41.0 211 415-650 33-247 (340)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-33 4.6E-38 328.6 44.5 320 353-891 113-442 (445)
56 2hes_X YDR267CP; beta-propelle 100.0 4E-34 1.4E-38 317.7 36.0 290 749-1078 12-328 (330)
57 3v7d_B Cell division control p 100.0 2.3E-33 7.9E-38 329.0 44.4 319 352-888 115-460 (464)
58 3gre_A Serine/threonine-protei 100.0 1.9E-35 6.6E-40 343.7 25.3 386 427-1023 34-437 (437)
59 3zwl_B Eukaryotic translation 100.0 1.6E-33 5.6E-38 319.4 40.0 302 415-935 27-348 (369)
60 3dm0_A Maltose-binding peripla 100.0 7E-34 2.4E-38 350.4 39.8 259 354-657 378-639 (694)
61 2j04_B YDR362CP, TAU91; beta p 100.0 6E-35 2.1E-39 340.7 26.4 244 366-649 169-428 (524)
62 3k26_A Polycomb protein EED; W 100.0 1.6E-34 5.6E-39 327.2 27.5 318 415-933 13-366 (366)
63 4a11_B DNA excision repair pro 100.0 2.2E-33 7.7E-38 323.2 36.1 357 379-933 21-405 (408)
64 4e54_B DNA damage-binding prot 100.0 1.4E-33 4.8E-38 326.8 32.8 241 355-638 116-364 (435)
65 1sq9_A Antiviral protein SKI8; 100.0 7.9E-33 2.7E-37 317.3 38.0 295 458-934 9-396 (397)
66 3zwl_B Eukaryotic translation 100.0 4.5E-32 1.6E-36 307.5 43.4 306 349-783 23-347 (369)
67 3dm0_A Maltose-binding peripla 100.0 1.1E-32 3.8E-37 339.7 40.9 211 415-650 377-593 (694)
68 2pm7_B Protein transport prote 100.0 1.3E-32 4.6E-37 300.4 34.6 255 354-649 5-285 (297)
69 3ei3_B DNA damage-binding prot 100.0 1.3E-32 4.5E-37 313.5 34.9 252 353-650 68-340 (383)
70 3i2n_A WD repeat-containing pr 100.0 3.1E-32 1.1E-36 307.3 36.1 299 460-934 13-354 (357)
71 4a11_B DNA excision repair pro 100.0 1.9E-32 6.4E-37 315.4 34.7 362 594-1078 21-405 (408)
72 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.1E-37 310.7 32.3 258 351-650 10-292 (357)
73 3ei3_B DNA damage-binding prot 100.0 1.8E-32 6.2E-37 312.4 33.8 290 576-1026 75-382 (383)
74 3k26_A Polycomb protein EED; W 100.0 2.5E-32 8.6E-37 309.2 34.7 310 356-781 16-365 (366)
75 1sq9_A Antiviral protein SKI8; 100.0 2.9E-32 1E-36 312.5 35.1 257 356-658 14-330 (397)
76 1k8k_C P40, ARP2/3 complex 41 100.0 3.8E-32 1.3E-36 308.6 35.5 244 357-649 7-274 (372)
77 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-32 1.3E-36 308.7 35.2 324 416-893 4-363 (372)
78 4e54_B DNA damage-binding prot 100.0 2.1E-32 7.1E-37 317.0 33.6 293 577-1030 122-434 (435)
79 3odt_A Protein DOA1; ubiquitin 100.0 1E-31 3.5E-36 296.8 37.7 246 350-650 9-256 (313)
80 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.9E-38 317.2 22.4 327 463-1014 13-349 (588)
81 3dwl_C Actin-related protein 2 100.0 2.7E-33 9.4E-38 318.6 24.2 257 357-648 10-280 (377)
82 4h5i_A Guanine nucleotide-exch 100.0 1.6E-32 5.5E-37 308.7 28.8 294 465-934 14-344 (365)
83 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-31 1.1E-35 292.9 38.1 287 415-898 13-303 (313)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-33 9.9E-38 314.7 20.8 315 357-879 14-349 (588)
85 4aez_A CDC20, WD repeat-contai 100.0 3E-31 1E-35 303.9 38.1 295 348-782 81-380 (401)
86 4h5i_A Guanine nucleotide-exch 100.0 5.6E-32 1.9E-36 304.3 29.3 295 751-1080 14-345 (365)
87 4gga_A P55CDC, cell division c 100.0 9E-31 3.1E-35 301.8 39.8 298 422-911 107-415 (420)
88 2pm7_B Protein transport prote 100.0 5.2E-31 1.8E-35 287.8 35.3 223 415-650 4-239 (297)
89 3dwl_C Actin-related protein 2 100.0 2.1E-32 7.1E-37 311.3 25.0 294 750-1076 10-377 (377)
90 4ggc_A P55CDC, cell division c 100.0 1.3E-30 4.5E-35 288.6 38.6 283 422-933 27-315 (318)
91 3dw8_B Serine/threonine-protei 100.0 6.5E-31 2.2E-35 306.7 34.8 274 355-651 25-375 (447)
92 1k32_A Tricorn protease; prote 100.0 1.7E-29 5.7E-34 325.3 51.3 445 419-1027 13-503 (1045)
93 4aez_A CDC20, WD repeat-contai 100.0 1.2E-30 4.1E-35 298.9 36.1 287 418-898 89-387 (401)
94 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 5.9E-36 294.4 27.6 226 415-650 8-248 (316)
95 4gga_A P55CDC, cell division c 100.0 4.1E-30 1.4E-34 296.3 39.0 286 750-1080 104-397 (420)
96 3bg1_A Protein SEC13 homolog; 100.0 9.1E-32 3.1E-36 296.6 23.9 254 356-649 11-293 (316)
97 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-30 1.3E-34 289.1 34.1 226 415-650 6-250 (351)
98 4ggc_A P55CDC, cell division c 100.0 1.7E-29 6E-34 279.6 37.7 283 753-1080 27-317 (318)
99 1yfq_A Cell cycle arrest prote 100.0 8.5E-30 2.9E-34 285.4 34.3 294 415-888 6-321 (342)
100 3mmy_A MRNA export factor; mRN 100.0 7.6E-30 2.6E-34 289.0 34.3 300 415-889 34-344 (368)
101 1yfq_A Cell cycle arrest prote 100.0 5.9E-30 2E-34 286.7 32.6 245 356-650 9-283 (342)
102 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-29 5.1E-34 293.3 37.0 233 356-650 131-366 (435)
103 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-29 5.3E-34 293.1 35.1 194 417-650 130-326 (435)
104 3jrp_A Fusion protein of prote 100.0 9.7E-30 3.3E-34 289.5 32.9 255 355-650 8-288 (379)
105 3mmy_A MRNA export factor; mRN 100.0 1.8E-29 6E-34 286.0 33.4 256 348-650 28-305 (368)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-30 1.6E-34 294.2 28.7 253 359-651 35-301 (402)
107 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-29 7.2E-34 282.9 32.4 260 354-650 7-338 (351)
108 3dw8_B Serine/threonine-protei 100.0 4.2E-29 1.4E-33 291.3 35.1 303 750-1076 27-444 (447)
109 3jrp_A Fusion protein of prote 100.0 1.1E-28 3.7E-33 280.8 34.1 223 415-650 6-241 (379)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-29 2.2E-33 284.9 31.2 288 755-1080 38-344 (402)
111 2xyi_A Probable histone-bindin 100.0 2.4E-28 8.2E-33 282.2 31.0 267 351-650 121-411 (430)
112 3bws_A Protein LP49; two-domai 100.0 4.8E-27 1.6E-31 272.5 41.3 320 422-933 62-432 (433)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-27 5.6E-32 277.3 36.7 262 359-647 5-337 (450)
114 1l0q_A Surface layer protein; 100.0 1.5E-26 5.1E-31 264.3 41.8 227 371-650 2-234 (391)
115 2w18_A PALB2, fancn, partner a 100.0 4.4E-27 1.5E-31 248.1 33.8 293 468-931 42-355 (356)
116 3jro_A Fusion protein of prote 100.0 3.1E-28 1.1E-32 301.1 28.7 255 355-650 6-286 (753)
117 1l0q_A Surface layer protein; 100.0 1.5E-26 5E-31 264.4 40.5 329 433-969 3-364 (391)
118 4gq1_A NUP37; propeller, trans 100.0 6.8E-28 2.3E-32 274.3 27.9 251 356-650 13-287 (393)
119 3vu4_A KMHSV2; beta-propeller 100.0 6.1E-27 2.1E-31 262.4 34.3 298 416-849 15-337 (355)
120 4gq1_A NUP37; propeller, trans 100.0 3.5E-28 1.2E-32 276.7 24.3 266 357-647 88-387 (393)
121 2w18_A PALB2, fancn, partner a 100.0 5.9E-27 2E-31 247.2 31.4 231 750-1077 110-356 (356)
122 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-26 3.9E-31 260.2 35.7 236 355-650 16-272 (355)
123 3bws_A Protein LP49; two-domai 100.0 1.3E-26 4.5E-31 268.8 36.5 296 421-891 123-432 (433)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.8E-27 2.3E-31 272.1 33.5 246 817-1083 101-396 (450)
125 3lrv_A PRE-mRNA-splicing facto 100.0 4.4E-27 1.5E-31 262.8 29.0 280 472-933 43-333 (343)
126 2xyi_A Probable histone-bindin 100.0 1.8E-26 6E-31 266.5 34.4 212 415-650 123-354 (430)
127 3lrv_A PRE-mRNA-splicing facto 100.0 3.1E-27 1.1E-31 264.1 26.7 234 766-1027 88-334 (343)
128 3jro_A Fusion protein of prote 100.0 2.9E-27 9.9E-32 292.5 28.9 251 816-1080 7-287 (753)
129 1nir_A Nitrite reductase; hemo 100.0 2.2E-25 7.6E-30 262.5 41.1 334 365-901 144-524 (543)
130 1nir_A Nitrite reductase; hemo 99.9 6E-25 2.1E-29 258.8 37.5 333 473-990 145-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-23 5.9E-28 239.2 29.2 303 464-914 61-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.8E-27 253.2 36.5 259 358-648 36-366 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.6E-23 1.2E-27 236.6 28.7 242 358-650 62-345 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.9E-27 253.2 33.7 343 420-934 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 4.1E-23 1.4E-27 256.5 29.1 235 359-650 17-290 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-21 7.9E-26 239.8 33.0 248 361-648 28-341 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-21 8.2E-26 239.6 32.9 244 819-1080 121-437 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 2E-21 6.8E-26 241.3 31.1 277 753-1065 62-427 (723)
139 3u4y_A Uncharacterized protein 99.9 5.5E-20 1.9E-24 204.3 37.5 239 364-650 3-253 (331)
140 1ri6_A Putative isomerase YBHE 99.9 4.7E-20 1.6E-24 206.0 32.4 281 716-1029 7-313 (343)
141 3u4y_A Uncharacterized protein 99.9 4E-20 1.4E-24 205.4 31.2 285 757-1080 3-306 (331)
142 1ri6_A Putative isomerase YBHE 99.9 3.5E-20 1.2E-24 207.1 30.8 243 817-1078 36-308 (343)
143 3vgz_A Uncharacterized protein 99.9 2.4E-19 8.2E-24 201.2 33.9 246 355-650 37-304 (353)
144 3vgz_A Uncharacterized protein 99.9 4E-19 1.4E-23 199.3 34.4 273 751-1069 40-335 (353)
145 1pby_B Quinohemoprotein amine 99.9 1.2E-19 4.2E-24 202.1 29.9 197 822-1034 85-318 (337)
146 1pby_B Quinohemoprotein amine 99.9 7.2E-20 2.5E-24 203.9 27.1 267 764-1081 2-313 (337)
147 3hfq_A Uncharacterized protein 99.8 2.6E-19 8.7E-24 200.3 30.4 248 817-1080 38-321 (347)
148 2ojh_A Uncharacterized protein 99.8 1.3E-19 4.5E-24 197.4 24.9 233 817-1069 40-293 (297)
149 1z68_A Fibroblast activation p 99.8 3.9E-19 1.3E-23 220.2 30.5 285 754-1080 62-445 (719)
150 2ojh_A Uncharacterized protein 99.8 5.2E-19 1.8E-23 192.7 26.9 240 351-640 34-293 (297)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-18 1.6E-22 194.5 32.5 259 752-1024 37-331 (434)
152 3hfq_A Uncharacterized protein 99.8 2.7E-18 9.4E-23 191.9 29.8 278 722-1030 14-323 (347)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 3.6E-18 1.2E-22 195.4 31.3 198 358-566 36-253 (434)
154 1z68_A Fibroblast activation p 99.8 8.2E-19 2.8E-23 217.3 27.3 234 363-649 20-346 (719)
155 3o4h_A Acylamino-acid-releasin 99.8 3.1E-18 1.1E-22 206.1 27.7 234 357-647 20-274 (582)
156 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.9E-22 206.7 32.5 233 359-650 17-295 (740)
157 3o4h_A Acylamino-acid-releasin 99.8 2.2E-18 7.7E-23 207.4 25.5 270 465-933 21-315 (582)
158 1jmx_B Amine dehydrogenase; ox 99.8 5E-18 1.7E-22 190.0 26.3 237 823-1081 4-328 (349)
159 4a5s_A Dipeptidyl peptidase 4 99.8 3.6E-17 1.2E-21 202.3 35.4 364 467-1033 18-456 (740)
160 3scy_A Hypothetical bacterial 99.8 1.9E-16 6.6E-21 177.9 36.7 230 753-1004 101-360 (361)
161 3scy_A Hypothetical bacterial 99.8 9.2E-17 3.2E-21 180.5 34.0 275 721-1031 24-344 (361)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.2E-17 7.6E-22 185.5 28.1 250 819-1079 40-342 (365)
163 1jmx_B Amine dehydrogenase; ox 99.8 3.4E-17 1.2E-21 183.2 28.0 260 362-657 3-332 (349)
164 3pe7_A Oligogalacturonate lyas 99.7 3.9E-16 1.3E-20 177.5 29.2 252 352-650 24-330 (388)
165 3pe7_A Oligogalacturonate lyas 99.7 4E-16 1.4E-20 177.4 28.4 207 416-650 26-274 (388)
166 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1.1E-19 166.8 33.3 228 369-637 14-272 (361)
167 2oiz_A Aromatic amine dehydrog 99.7 8.7E-15 3E-19 163.2 31.3 304 487-915 29-360 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.3E-15 7.9E-20 169.0 26.0 258 357-650 38-342 (365)
169 3c5m_A Oligogalacturonate lyas 99.7 1.5E-15 5E-20 173.3 22.7 162 422-638 37-208 (396)
170 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 6E-19 155.9 29.7 242 817-1078 28-280 (286)
171 3fvz_A Peptidyl-glycine alpha- 99.7 2.3E-14 8E-19 158.0 30.3 251 358-649 23-322 (329)
172 1qks_A Cytochrome CD1 nitrite 99.7 5.2E-13 1.8E-17 156.1 41.7 232 372-650 168-422 (567)
173 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-14 4E-19 160.5 26.0 251 818-1079 23-323 (329)
174 3c5m_A Oligogalacturonate lyas 99.7 5.7E-15 1.9E-19 168.3 23.9 238 361-650 38-330 (396)
175 1qks_A Cytochrome CD1 nitrite 99.7 6.6E-13 2.3E-17 155.3 41.0 328 480-990 168-546 (567)
176 3azo_A Aminopeptidase; POP fam 99.6 1.1E-14 3.9E-19 178.2 27.3 335 460-931 18-409 (662)
177 1q7f_A NHL, brain tumor CG1071 99.6 2.2E-13 7.7E-18 147.1 32.1 248 357-650 28-281 (286)
178 4a2l_A BT_4663, two-component 99.6 5.4E-10 1.9E-14 139.1 65.0 544 358-1079 87-660 (795)
179 3azo_A Aminopeptidase; POP fam 99.6 7.1E-14 2.4E-18 171.1 28.9 243 354-647 19-321 (662)
180 4a2l_A BT_4663, two-component 99.6 1.1E-09 3.9E-14 136.2 64.4 546 358-1080 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 3.9E-13 1.3E-17 149.9 27.5 220 820-1077 60-330 (347)
182 3e5z_A Putative gluconolactona 99.6 9.1E-13 3.1E-17 143.0 29.5 243 353-650 22-287 (296)
183 2gop_A Trilobed protease; beta 99.5 8.1E-13 2.8E-17 147.3 27.4 222 359-650 15-292 (347)
184 2xdw_A Prolyl endopeptidase; a 99.5 1.2E-12 4.2E-17 160.9 29.9 247 357-651 123-416 (710)
185 3no2_A Uncharacterized protein 99.5 1.2E-12 4.1E-17 139.2 24.9 253 829-1096 4-270 (276)
186 2z2n_A Virginiamycin B lyase; 99.5 3.5E-11 1.2E-15 130.7 36.9 281 750-1080 13-297 (299)
187 3sjl_D Methylamine dehydrogena 99.5 9.8E-12 3.3E-16 135.5 31.8 205 820-1034 138-371 (386)
188 2xdw_A Prolyl endopeptidase; a 99.5 7.8E-13 2.7E-17 162.6 26.2 244 817-1080 123-416 (710)
189 2dg1_A DRP35, lactonase; beta 99.5 3E-12 1E-16 141.7 27.9 194 421-648 6-212 (333)
190 3v9f_A Two-component system se 99.5 4E-08 1.4E-12 122.0 68.2 607 358-1078 18-656 (781)
191 2bkl_A Prolyl endopeptidase; m 99.5 4.7E-13 1.6E-17 164.0 23.2 241 817-1080 119-399 (695)
192 3dsm_A Uncharacterized protein 99.5 4.1E-12 1.4E-16 139.6 28.1 273 722-1034 15-309 (328)
193 3dsm_A Uncharacterized protein 99.5 2.2E-12 7.5E-17 141.9 25.6 238 819-1080 44-303 (328)
194 3e5z_A Putative gluconolactona 99.5 2.7E-12 9.4E-17 139.2 26.0 235 817-1080 26-288 (296)
195 2mad_H Methylamine dehydrogena 99.5 4.3E-11 1.5E-15 133.1 35.9 204 821-1033 127-357 (373)
196 2dg1_A DRP35, lactonase; beta 99.5 3.1E-11 1E-15 133.5 34.6 247 353-640 39-301 (333)
197 1rwi_B Serine/threonine-protei 99.5 6.2E-12 2.1E-16 134.4 26.5 239 820-1080 25-266 (270)
198 2bkl_A Prolyl endopeptidase; m 99.5 8.9E-13 3.1E-17 161.5 22.3 246 357-651 119-399 (695)
199 2z2n_A Virginiamycin B lyase; 99.5 2E-10 6.9E-15 124.6 38.7 239 357-647 13-253 (299)
200 1rwi_B Serine/threonine-protei 99.5 6.6E-12 2.3E-16 134.1 25.6 239 360-650 25-265 (270)
201 3v9f_A Two-component system se 99.5 3.2E-08 1.1E-12 122.8 60.9 510 359-1025 115-655 (781)
202 3no2_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 131.4 25.6 233 373-658 7-260 (276)
203 3sjl_D Methylamine dehydrogena 99.4 2.3E-11 7.8E-16 132.6 27.6 277 758-1080 39-365 (386)
204 3c75_H MADH, methylamine dehyd 99.4 5.1E-11 1.8E-15 132.6 28.0 204 821-1033 179-409 (426)
205 2mad_H Methylamine dehydrogena 99.4 3.8E-10 1.3E-14 125.5 33.6 268 350-656 58-356 (373)
206 1yr2_A Prolyl oligopeptidase; 99.4 2.2E-11 7.5E-16 150.3 22.3 245 357-650 161-442 (741)
207 2qc5_A Streptogramin B lactona 99.3 2.8E-09 9.5E-14 115.6 36.0 278 750-1077 18-299 (300)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.9E-10 1.3E-14 123.4 28.8 235 819-1078 18-299 (314)
209 2qc5_A Streptogramin B lactona 99.3 3.7E-09 1.3E-13 114.6 36.3 238 357-647 18-258 (300)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 4.2E-10 1.4E-14 123.1 29.0 256 356-649 15-299 (314)
211 1yr2_A Prolyl oligopeptidase; 99.3 9.1E-11 3.1E-15 144.7 25.2 281 712-1029 116-444 (741)
212 3c75_H MADH, methylamine dehyd 99.3 8.7E-10 3E-14 122.7 27.1 257 368-657 82-409 (426)
213 3hrp_A Uncharacterized protein 99.3 2.1E-09 7.3E-14 121.3 30.2 256 359-647 131-408 (409)
214 3dr2_A Exported gluconolactona 99.3 1.1E-09 3.9E-14 118.9 26.8 239 353-643 39-301 (305)
215 4a0p_A LRP6, LRP-6, low-densit 99.2 1.8E-05 6.1E-10 93.8 64.8 525 373-1080 9-551 (628)
216 3hrp_A Uncharacterized protein 99.2 1.8E-09 6.3E-14 121.8 27.8 249 819-1076 131-408 (409)
217 3g4e_A Regucalcin; six bladed 99.2 2.9E-09 9.8E-14 115.1 28.2 234 359-638 13-261 (297)
218 1mda_H Methylamine dehydrogena 99.2 4.4E-10 1.5E-14 123.2 21.6 197 821-1034 126-354 (368)
219 1xip_A Nucleoporin NUP159; bet 99.2 2.2E-10 7.5E-15 125.6 18.8 174 819-1013 38-231 (388)
220 1xip_A Nucleoporin NUP159; bet 99.2 2.6E-10 8.9E-15 125.0 18.3 177 422-637 39-232 (388)
221 3g4e_A Regucalcin; six bladed 99.2 4E-09 1.4E-13 114.0 27.3 225 819-1066 13-260 (297)
222 2qe8_A Uncharacterized protein 99.2 4.2E-10 1.4E-14 124.5 19.7 273 752-1074 17-317 (343)
223 3iuj_A Prolyl endopeptidase; h 99.2 1.7E-09 5.6E-14 132.0 26.7 246 357-650 127-406 (693)
224 2qe8_A Uncharacterized protein 99.2 1.4E-09 4.6E-14 120.4 23.0 250 359-641 17-313 (343)
225 3s94_A LRP-6, low-density lipo 99.2 1.8E-05 6.2E-10 93.6 58.5 502 420-1080 39-553 (619)
226 1kb0_A Quinohemoprotein alcoho 99.2 1E-08 3.5E-13 123.6 30.4 80 839-920 457-537 (677)
227 2ghs_A AGR_C_1268P; regucalcin 99.1 1.1E-08 3.9E-13 111.9 27.8 228 360-639 50-292 (326)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.5E-08 1.5E-12 109.9 32.2 158 431-614 52-216 (376)
229 1yiq_A Quinohemoprotein alcoho 99.1 1.4E-08 4.8E-13 122.7 29.4 79 839-919 455-534 (689)
230 1kb0_A Quinohemoprotein alcoho 99.1 2.5E-08 8.5E-13 120.2 31.5 203 863-1078 246-567 (677)
231 2ghs_A AGR_C_1268P; regucalcin 99.1 2.6E-08 9E-13 109.0 27.9 225 754-1016 51-292 (326)
232 1mda_H Methylamine dehydrogena 99.1 8.7E-09 3E-13 112.8 23.2 250 371-658 32-354 (368)
233 3dr2_A Exported gluconolactona 99.1 1.7E-08 5.7E-13 109.6 25.2 229 751-1020 44-301 (305)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.2E-07 4E-12 106.5 32.9 214 833-1075 146-375 (376)
235 1yiq_A Quinohemoprotein alcoho 99.1 2.3E-08 7.8E-13 120.8 28.6 167 864-1034 239-513 (689)
236 3iuj_A Prolyl endopeptidase; h 99.1 7.2E-09 2.5E-13 126.4 23.9 242 750-1030 127-409 (693)
237 3hxj_A Pyrrolo-quinoline quino 99.0 1.1E-08 3.7E-13 112.7 22.2 177 426-646 25-201 (330)
238 2ece_A 462AA long hypothetical 99.0 7.2E-08 2.4E-12 105.4 27.4 233 825-1066 88-399 (462)
239 2ece_A 462AA long hypothetical 99.0 1.4E-07 4.9E-12 103.0 28.6 238 761-1014 93-399 (462)
240 3s94_A LRP-6, low-density lipo 99.0 0.00018 6.3E-09 85.0 60.1 497 355-983 36-552 (619)
241 4a0p_A LRP6, LRP-6, low-densit 99.0 0.0002 6.9E-09 84.7 58.0 504 358-1033 36-556 (628)
242 3hxj_A Pyrrolo-quinoline quino 98.9 3.5E-08 1.2E-12 108.6 21.3 218 363-646 24-241 (330)
243 1fwx_A Nitrous oxide reductase 98.9 5.6E-08 1.9E-12 110.2 22.9 240 828-1084 99-437 (595)
244 2hz6_A Endoplasmic reticulum t 98.9 4.4E-10 1.5E-14 125.3 3.4 189 871-1086 8-200 (369)
245 2hz6_A Endoplasmic reticulum t 98.8 1.2E-09 4E-14 121.8 4.3 184 431-652 8-195 (369)
246 1fwx_A Nitrous oxide reductase 98.8 5.6E-08 1.9E-12 110.2 16.6 328 525-935 17-433 (595)
247 3ott_A Two-component system se 98.7 0.0021 7.1E-08 79.1 62.2 535 358-1078 62-626 (758)
248 3ei3_A DNA damage-binding prot 98.7 0.0016 5.6E-08 82.3 54.5 175 883-1078 808-999 (1158)
249 1kv9_A Type II quinohemoprotei 98.7 5.1E-06 1.8E-10 99.9 30.6 168 864-1035 234-497 (668)
250 1npe_A Nidogen, entactin; glyc 98.7 1.1E-05 3.8E-10 85.2 29.6 202 820-1034 37-246 (267)
251 1w6s_A Methanol dehydrogenase 98.7 1.6E-05 5.5E-10 93.2 33.5 166 864-1034 245-511 (599)
252 1kv9_A Type II quinohemoprotei 98.7 3.4E-06 1.1E-10 101.5 28.0 81 839-921 438-520 (668)
253 2iwa_A Glutamine cyclotransfer 98.7 1.6E-06 5.4E-11 89.3 20.7 216 850-1080 10-239 (266)
254 2ad6_A Methanol dehydrogenase 98.6 2.3E-05 7.7E-10 92.2 32.9 197 823-1035 239-503 (571)
255 2iwa_A Glutamine cyclotransfer 98.6 6.4E-06 2.2E-10 84.8 24.2 220 348-606 8-238 (266)
256 3nol_A Glutamine cyclotransfer 98.5 3.5E-06 1.2E-10 85.3 18.8 198 851-1065 33-243 (262)
257 2ad6_A Methanol dehydrogenase 98.5 4.6E-05 1.6E-09 89.6 31.4 82 881-970 443-524 (571)
258 3nol_A Glutamine cyclotransfer 98.5 4.8E-06 1.6E-10 84.4 19.3 186 821-1015 45-244 (262)
259 3ei3_A DNA damage-binding prot 98.5 0.0088 3E-07 75.7 56.6 215 795-1024 807-1060(1158)
260 1w6s_A Methanol dehydrogenase 98.5 7E-05 2.4E-09 87.8 31.5 78 839-918 453-531 (599)
261 3nok_A Glutaminyl cyclase; bet 98.5 5.1E-06 1.7E-10 84.0 18.3 182 821-1014 57-253 (268)
262 3nok_A Glutaminyl cyclase; bet 98.5 2.9E-06 9.9E-11 85.8 16.5 197 851-1066 45-254 (268)
263 1flg_A Protein (quinoprotein e 98.5 2.7E-05 9.4E-10 91.5 27.3 80 838-919 465-545 (582)
264 1npe_A Nidogen, entactin; glyc 98.4 0.00015 5.1E-09 76.3 29.8 223 359-631 36-263 (267)
265 2fp8_A Strictosidine synthase; 98.4 5.4E-05 1.8E-09 82.4 26.7 237 820-1080 20-315 (322)
266 3mbr_X Glutamine cyclotransfer 98.4 3.2E-05 1.1E-09 77.7 21.0 199 851-1066 11-223 (243)
267 2p4o_A Hypothetical protein; p 98.4 0.00026 8.9E-09 76.2 30.1 244 347-639 20-278 (306)
268 3mbr_X Glutamine cyclotransfer 98.4 4.2E-05 1.4E-09 76.8 21.3 186 819-1014 21-222 (243)
269 1flg_A Protein (quinoprotein e 98.4 0.0002 6.8E-09 84.2 30.6 248 830-1088 117-526 (582)
270 2fp8_A Strictosidine synthase; 98.3 0.00014 4.8E-09 79.1 26.6 254 359-650 19-314 (322)
271 2p4o_A Hypothetical protein; p 98.3 0.0002 6.8E-09 77.1 27.5 229 819-1069 32-279 (306)
272 2xe4_A Oligopeptidase B; hydro 98.3 7.9E-05 2.7E-09 91.2 26.5 159 360-542 175-354 (751)
273 2xe4_A Oligopeptidase B; hydro 98.2 8.5E-05 2.9E-09 90.9 25.2 195 820-1024 175-398 (751)
274 3qqz_A Putative uncharacterize 98.2 0.00057 1.9E-08 69.8 27.0 202 357-603 25-251 (255)
275 3qqz_A Putative uncharacterize 98.2 0.00041 1.4E-08 70.9 25.5 217 854-1075 21-250 (255)
276 1ijq_A LDL receptor, low-densi 98.2 0.0013 4.3E-08 71.0 30.9 206 818-1033 29-245 (316)
277 3v64_C Agrin; beta propeller, 98.2 0.00096 3.3E-08 73.0 30.1 238 820-1080 35-277 (349)
278 3v64_C Agrin; beta propeller, 98.2 0.0019 6.6E-08 70.6 31.6 205 819-1034 73-283 (349)
279 2xbg_A YCF48-like protein; pho 98.2 0.0035 1.2E-07 67.8 33.3 279 751-1075 35-319 (327)
280 3v65_B Low-density lipoprotein 98.1 0.0012 3.9E-08 73.5 29.3 205 819-1034 116-326 (386)
281 1ijq_A LDL receptor, low-densi 98.1 0.0013 4.4E-08 70.9 28.9 229 832-1080 3-240 (316)
282 1k3i_A Galactose oxidase precu 98.1 0.00021 7.1E-09 86.2 24.6 238 819-1067 243-530 (656)
283 4hw6_A Hypothetical protein, I 98.1 0.00082 2.8E-08 75.8 26.8 248 820-1077 140-432 (433)
284 3p5b_L Low density lipoprotein 98.1 0.0026 9E-08 70.9 30.7 208 818-1034 111-328 (400)
285 2xbg_A YCF48-like protein; pho 98.1 0.011 3.7E-07 64.0 34.7 194 819-1024 122-320 (327)
286 3tc9_A Hypothetical hydrolase; 98.1 0.00083 2.9E-08 75.8 26.4 246 820-1077 138-429 (430)
287 3p5b_L Low density lipoprotein 98.1 0.0021 7.3E-08 71.6 29.5 230 831-1080 84-322 (400)
288 1k3i_A Galactose oxidase precu 98.0 0.00034 1.1E-08 84.4 22.7 244 822-1080 189-499 (656)
289 3v65_B Low-density lipoprotein 98.0 0.0032 1.1E-07 69.9 28.8 215 353-613 110-326 (386)
290 3ott_A Two-component system se 97.9 0.09 3.1E-06 64.4 57.6 494 359-1021 103-622 (758)
291 3amr_A 3-phytase; beta-propell 97.9 0.0073 2.5E-07 63.9 28.2 197 829-1034 39-272 (355)
292 1n7d_A LDL receptor, low-densi 97.9 0.00018 6.3E-09 86.5 17.4 207 819-1034 406-622 (699)
293 3sov_A LRP-6, low-density lipo 97.8 0.0022 7.6E-08 68.8 23.8 228 832-1080 6-240 (318)
294 4hw6_A Hypothetical protein, I 97.8 0.0047 1.6E-07 69.6 26.8 252 359-647 139-431 (433)
295 3tc9_A Hypothetical hydrolase; 97.8 0.0051 1.7E-07 69.3 27.1 156 359-542 137-301 (430)
296 3kya_A Putative phosphatase; s 97.7 0.0064 2.2E-07 68.4 26.0 253 753-1030 140-479 (496)
297 3kya_A Putative phosphatase; s 97.7 0.0076 2.6E-07 67.8 26.5 252 820-1080 140-477 (496)
298 3m0c_C LDL receptor, low-densi 97.7 0.012 4E-07 71.3 29.0 206 818-1033 423-639 (791)
299 3sov_A LRP-6, low-density lipo 97.7 0.015 5E-07 62.4 26.7 209 359-613 35-246 (318)
300 3amr_A 3-phytase; beta-propell 97.6 0.0059 2E-07 64.6 21.5 191 872-1077 40-262 (355)
301 2p9w_A MAL S 1 allergenic prot 97.5 0.026 9E-07 59.1 24.6 205 818-1026 12-265 (334)
302 3m0c_C LDL receptor, low-densi 97.5 0.065 2.2E-06 64.8 31.1 207 420-650 423-633 (791)
303 1n7d_A LDL receptor, low-densi 97.4 0.00073 2.5E-08 81.3 13.9 228 833-1080 380-616 (699)
304 2xzh_A Clathrin heavy chain 1; 97.3 0.2 6.8E-06 51.9 32.4 96 839-935 227-334 (365)
305 1bpo_A Protein (clathrin); cla 97.3 0.29 9.9E-06 52.8 32.8 96 839-935 226-333 (494)
306 2ism_A Putative oxidoreductase 97.2 0.19 6.6E-06 54.6 28.6 109 357-485 29-152 (352)
307 1bpo_A Protein (clathrin); cla 97.2 0.37 1.3E-05 52.0 32.3 235 821-1080 68-333 (494)
308 2xtc_A F-box-like/WD repeat-co 97.2 0.00032 1.1E-08 56.2 4.3 36 1-36 1-36 (90)
309 2ism_A Putative oxidoreductase 97.1 0.098 3.4E-06 56.9 25.0 100 820-921 32-153 (352)
310 3a9g_A Putative uncharacterize 97.1 0.13 4.3E-06 56.0 25.5 231 819-1066 29-330 (354)
311 2xzh_A Clathrin heavy chain 1; 97.0 0.39 1.3E-05 49.7 31.1 247 364-650 72-333 (365)
312 3a9g_A Putative uncharacterize 97.0 0.56 1.9E-05 50.8 30.4 109 357-485 27-152 (354)
313 3ii7_A Kelch-like protein 7; p 97.0 0.098 3.3E-06 55.7 23.3 225 831-1080 13-274 (306)
314 3pbp_A Nucleoporin NUP82; beta 96.9 0.061 2.1E-06 58.0 20.0 109 823-933 25-158 (452)
315 2p9w_A MAL S 1 allergenic prot 96.9 0.17 6E-06 53.0 23.1 164 361-542 15-215 (334)
316 2g8s_A Glucose/sorbosone dehyd 96.9 0.14 4.8E-06 55.6 23.8 242 820-1077 19-351 (353)
317 2vpj_A Kelch-like protein 12; 96.7 0.099 3.4E-06 55.5 20.8 217 839-1080 31-280 (301)
318 2xn4_A Kelch-like protein 2; s 96.7 0.19 6.5E-06 53.3 22.8 229 830-1085 16-281 (302)
319 2vpj_A Kelch-like protein 12; 96.5 0.36 1.2E-05 51.0 23.1 188 828-1030 61-282 (301)
320 4asc_A Kelch repeat and BTB do 96.4 0.58 2E-05 49.8 24.4 219 838-1080 12-279 (315)
321 1zgk_A Kelch-like ECH-associat 96.4 0.33 1.1E-05 51.6 22.0 228 828-1080 23-289 (308)
322 3ii7_A Kelch-like protein 7; p 96.3 0.36 1.2E-05 51.2 21.8 229 371-650 12-273 (306)
323 3das_A Putative oxidoreductase 96.2 1.4 4.6E-05 47.1 25.4 201 819-1027 32-293 (347)
324 1cru_A Protein (soluble quinop 96.2 1.4 4.7E-05 49.5 26.7 104 819-922 27-163 (454)
325 3sre_A PON1, serum paraoxonase 96.2 0.54 1.9E-05 50.4 22.1 186 422-638 51-286 (355)
326 2g8s_A Glucose/sorbosone dehyd 96.0 2.1 7.3E-05 46.2 26.7 113 358-485 17-148 (353)
327 1xi4_A Clathrin heavy chain; a 96.0 0.42 1.4E-05 59.7 22.3 204 821-1034 68-297 (1630)
328 2be1_A Serine/threonine-protei 96.0 0.015 5.3E-07 61.8 8.7 199 873-1083 11-236 (339)
329 1uuj_A Platelet-activating fac 95.8 0.0082 2.8E-07 47.8 4.2 55 5-59 10-66 (88)
330 3pbp_A Nucleoporin NUP82; beta 95.8 0.14 4.7E-06 55.4 14.9 127 359-495 66-209 (452)
331 4asc_A Kelch repeat and BTB do 95.7 1.1 3.6E-05 47.7 22.3 226 373-650 7-278 (315)
332 1tl2_A L10, protein (tachylect 95.7 0.17 5.7E-06 49.3 13.6 149 871-1027 3-164 (236)
333 2xn4_A Kelch-like protein 2; s 95.7 0.54 1.8E-05 49.7 19.6 188 431-650 61-277 (302)
334 2uvk_A YJHT; unknown function, 95.6 0.53 1.8E-05 51.2 19.7 92 829-923 19-128 (357)
335 1tl2_A L10, protein (tachylect 95.4 0.26 8.7E-06 48.0 13.6 150 860-1019 41-203 (236)
336 2woz_A Kelch repeat and BTB do 95.2 2.2 7.6E-05 45.2 22.7 218 839-1080 24-289 (318)
337 1zgk_A Kelch-like ECH-associat 95.2 2.3 7.8E-05 44.9 22.6 187 829-1030 70-291 (308)
338 1xi4_A Clathrin heavy chain; a 95.1 1.6 5.5E-05 54.7 22.8 71 862-933 261-331 (1630)
339 3sbq_A Nitrous-oxide reductase 95.1 4 0.00014 45.6 23.6 248 828-1085 140-485 (638)
340 2nxp_A Transcription initiatio 94.9 0.084 2.9E-06 48.8 8.4 67 67-134 48-114 (156)
341 3sbq_A Nitrous-oxide reductase 94.5 7.8 0.00027 43.4 28.5 102 818-922 322-454 (638)
342 3s25_A Hypothetical 7-bladed b 94.4 5.9 0.0002 41.4 22.6 174 826-1029 21-219 (302)
343 2uvk_A YJHT; unknown function, 94.3 3.4 0.00012 44.6 21.6 58 974-1033 286-349 (357)
344 2be1_A Serine/threonine-protei 94.2 0.52 1.8E-05 50.1 13.9 146 838-987 66-236 (339)
345 2woz_A Kelch repeat and BTB do 94.1 3.8 0.00013 43.3 21.2 191 825-1031 52-292 (318)
346 2j4b_A TAF5, transcription ini 94.1 0.053 1.8E-06 48.8 5.1 64 67-132 29-92 (138)
347 3qhy_B Beta-lactamase inhibito 94.0 4.7 0.00016 41.7 20.8 222 820-1078 25-246 (282)
348 1cru_A Protein (soluble quinop 93.9 3.4 0.00012 46.3 20.7 110 903-1015 27-163 (454)
349 3das_A Putative oxidoreductase 93.9 7.9 0.00027 41.2 29.5 113 357-485 30-157 (347)
350 2zwa_A Leucine carboxyl methyl 93.5 2.4 8.3E-05 50.7 19.7 194 828-1030 396-639 (695)
351 2j49_A Transcription initiatio 93.3 0.043 1.5E-06 49.9 3.0 63 67-131 31-93 (148)
352 3s25_A Hypothetical 7-bladed b 93.3 9 0.00031 40.0 25.3 175 824-1028 58-257 (302)
353 3sre_A PON1, serum paraoxonase 93.2 10 0.00035 40.5 30.9 165 358-542 49-252 (355)
354 3b7f_A Glycosyl hydrolase, BNR 90.3 24 0.00081 38.5 26.9 247 818-1072 54-366 (394)
355 3q6k_A 43.2 kDa salivary prote 87.7 33 0.0011 36.8 20.1 156 839-1026 123-306 (381)
356 2zwa_A Leucine carboxyl methyl 86.7 12 0.0004 44.7 17.1 195 871-1080 397-637 (695)
357 2wg3_C Hedgehog-interacting pr 82.6 17 0.00058 40.6 14.9 114 903-1017 14-160 (463)
358 2wg3_C Hedgehog-interacting pr 82.5 66 0.0023 35.7 27.6 115 359-486 14-158 (463)
359 3qhy_B Beta-lactamase inhibito 82.3 47 0.0016 34.0 23.5 184 820-1027 64-247 (282)
360 4hvt_A Ritya.17583.B, post-pro 79.7 69 0.0024 37.9 19.5 33 363-395 133-170 (711)
361 4gq2_M Nucleoporin NUP120; bet 78.1 8 0.00028 47.9 11.3 81 996-1080 236-319 (950)
362 3uc1_A DNA gyrase subunit A; D 77.4 74 0.0025 33.3 26.9 211 751-982 41-279 (327)
363 3no0_A DNA gyrase subunit A; D 77.1 68 0.0023 32.7 21.8 115 817-934 66-197 (276)
364 4hvt_A Ritya.17583.B, post-pro 76.5 1.3E+02 0.0044 35.6 24.2 236 823-1077 133-429 (711)
365 3f7f_A Nucleoporin NUP120; nuc 73.4 26 0.00087 40.9 12.8 37 997-1035 223-259 (729)
366 4gq2_M Nucleoporin NUP120; bet 66.3 1.2E+02 0.0039 37.5 17.7 73 576-648 237-316 (950)
367 2wpv_A GET4, UPF0363 protein Y 59.7 25 0.00086 36.4 8.4 23 38-60 17-39 (312)
368 3no0_A DNA gyrase subunit A; D 59.4 1.5E+02 0.0053 29.9 21.4 197 820-1027 25-247 (276)
369 2d68_A FOP, FGFR1OP; alpha hel 55.1 11 0.00037 29.9 3.5 29 7-35 20-48 (82)
370 2zux_A YESW protein; beta-prop 54.3 2.7E+02 0.0094 31.3 28.1 180 357-550 177-408 (591)
371 4gco_A Protein STI-1; structur 53.9 52 0.0018 28.5 8.7 99 14-119 22-125 (126)
372 4fhn_B Nucleoporin NUP120; pro 51.2 11 0.00037 48.0 5.0 42 996-1037 238-279 (1139)
373 3lpz_A GET4 (YOR164C homolog); 46.4 74 0.0025 33.2 9.3 23 38-60 16-41 (336)
374 3mkr_A Coatomer subunit epsilo 44.0 84 0.0029 32.2 9.8 86 5-101 64-157 (291)
375 3zwu_A Alkaline phosphatase PH 43.0 46 0.0016 38.2 7.8 59 954-1013 477-548 (592)
376 3b7f_A Glycosyl hydrolase, BNR 42.8 3.4E+02 0.012 28.9 25.8 243 832-1085 24-327 (394)
377 4gcn_A Protein STI-1; structur 41.5 87 0.003 26.9 8.1 101 15-117 18-124 (127)
378 4g26_A Pentatricopeptide repea 41.4 1.2E+02 0.0041 34.1 11.2 74 21-99 121-200 (501)
379 4fhn_B Nucleoporin NUP120; pro 38.9 1.1E+02 0.0037 38.8 11.2 40 576-615 239-278 (1139)
380 2lni_A Stress-induced-phosphop 38.5 1.7E+02 0.006 24.4 10.6 90 7-102 18-112 (133)
381 4a9v_A PHOX; hydrolase, beta-p 37.5 76 0.0026 35.9 8.2 60 954-1014 477-549 (592)
382 4ga2_A E3 SUMO-protein ligase 37.2 1.1E+02 0.0039 27.1 8.5 94 21-121 13-111 (150)
383 3mkr_A Coatomer subunit epsilo 36.6 2E+02 0.0067 29.3 11.2 14 47-60 78-91 (291)
384 1wp5_A Topoisomerase IV; broke 34.7 4.1E+02 0.014 27.5 27.0 203 818-1026 38-277 (323)
385 1elr_A TPR2A-domain of HOP; HO 34.0 2E+02 0.0068 23.8 9.4 94 9-102 8-107 (131)
386 1zi0_A DNA gyrase subunit A; b 33.3 4.1E+02 0.014 27.2 29.2 236 829-1078 2-277 (307)
387 1wp5_A Topoisomerase IV; broke 33.3 4.3E+02 0.015 27.4 28.2 190 828-1026 3-225 (323)
388 3l6v_A GYRA, DNA gyrase subuni 33.3 4.6E+02 0.016 27.7 23.7 256 364-649 1-316 (370)
389 3qou_A Protein YBBN; thioredox 31.8 1.8E+02 0.0062 29.4 10.0 104 10-120 122-230 (287)
390 3uc1_A DNA gyrase subunit A; D 31.6 4.6E+02 0.016 27.2 27.0 162 860-1027 95-280 (327)
391 2k9m_A RNA polymerase sigma fa 31.5 57 0.0019 28.7 4.9 91 2-104 18-122 (130)
392 3q6k_A 43.2 kDa salivary prote 31.4 5E+02 0.017 27.6 23.3 62 443-505 124-197 (381)
393 2qfc_A PLCR protein; TPR, HTH, 30.1 2.2E+02 0.0074 28.8 10.3 95 7-102 77-183 (293)
394 1elw_A TPR1-domain of HOP; HOP 29.4 2.2E+02 0.0076 22.9 10.1 89 8-102 7-100 (118)
395 3qwp_A SET and MYND domain-con 28.4 1.8E+02 0.0062 31.8 9.6 96 6-104 288-401 (429)
396 4asv_A Small glutamine-rich te 28.0 35 0.0012 27.4 2.5 19 1-19 15-33 (92)
397 1vk8_A Hypothetical protein TM 27.5 9.5 0.00032 32.1 -0.8 35 25-60 38-72 (106)
398 2pl2_A Hypothetical conserved 27.3 3E+02 0.01 26.1 10.2 107 8-119 8-128 (217)
399 1kdl_A YOPD protein; yersinia, 27.3 35 0.0012 19.7 1.7 15 5-19 4-18 (26)
400 4a9v_A PHOX; hydrolase, beta-p 27.2 1.6E+02 0.0054 33.4 8.6 61 860-921 476-549 (592)
401 3u4t_A TPR repeat-containing p 27.1 2.9E+02 0.0099 27.0 10.6 106 9-118 7-117 (272)
402 1oyi_A Double-stranded RNA-bin 27.0 34 0.0011 27.1 2.3 30 6-37 16-45 (82)
403 3sz7_A HSC70 cochaperone (SGT) 26.9 2E+02 0.0068 25.7 8.4 85 11-101 17-106 (164)
404 2xev_A YBGF; tetratricopeptide 26.9 1.9E+02 0.0065 24.2 7.9 90 9-102 6-104 (129)
405 3bu8_A Telomeric repeat-bindin 26.9 2.4E+02 0.0082 26.9 8.3 101 68-188 108-209 (235)
406 3upv_A Heat shock protein STI1 26.8 2.3E+02 0.0078 23.7 8.4 87 10-102 9-100 (126)
407 1suu_A DNA gyrase subunit A; t 24.4 5.9E+02 0.02 26.1 30.9 203 712-934 6-232 (312)
408 2vgx_A Chaperone SYCD; alterna 24.2 3.6E+02 0.012 23.6 9.9 83 12-101 28-116 (148)
409 1suu_A DNA gyrase subunit A; t 24.0 6E+02 0.02 26.0 29.9 199 761-983 6-232 (312)
410 4g26_A Pentatricopeptide repea 23.3 3.6E+02 0.012 30.1 11.0 92 21-117 86-183 (501)
411 3urz_A Uncharacterized protein 23.2 3.1E+02 0.01 25.8 9.3 107 6-119 5-132 (208)
412 2zuy_A YESX protein; beta-prop 22.9 8.6E+02 0.029 27.5 20.4 181 357-551 181-413 (620)
413 3zwu_A Alkaline phosphatase PH 22.9 1.6E+02 0.0055 33.7 7.9 39 597-636 510-548 (592)
414 1na0_A Designed protein CTPR3; 22.1 3.2E+02 0.011 22.1 9.6 86 11-102 15-105 (125)
415 3f7f_A Nucleoporin NUP120; nuc 22.0 99 0.0034 36.1 5.9 36 468-507 224-259 (729)
416 2dba_A Smooth muscle cell asso 21.5 3.7E+02 0.013 22.8 11.0 89 8-102 31-127 (148)
417 3mez_A Mannose-specific lectin 21.4 3.6E+02 0.012 22.5 8.8 54 906-979 22-75 (111)
418 4gco_A Protein STI-1; structur 21.0 1.9E+02 0.0066 24.6 6.6 70 43-120 22-92 (126)
419 2xcb_A PCRH, regulatory protei 20.9 4E+02 0.014 22.9 9.6 16 45-60 63-78 (142)
420 2k9l_A RNA polymerase sigma fa 20.7 50 0.0017 25.7 2.2 35 2-36 27-62 (76)
421 3u3w_A Transcriptional activat 20.7 4.2E+02 0.014 26.5 10.3 93 8-102 78-183 (293)
422 2yhc_A BAMD, UPF0169 lipoprote 20.2 2.1E+02 0.007 27.5 7.4 97 6-103 5-125 (225)
423 1hxi_A PEX5, peroxisome target 20.2 2.2E+02 0.0076 23.9 6.8 71 42-119 25-95 (121)
424 2dba_A Smooth muscle cell asso 20.2 2.2E+02 0.0075 24.4 7.1 77 39-119 33-109 (148)
425 4b4t_P 26S proteasome regulato 20.1 3E+02 0.01 30.2 9.3 94 8-102 139-246 (445)
426 3q49_B STIP1 homology and U bo 20.1 3.5E+02 0.012 22.7 8.4 87 9-101 13-104 (137)
427 1zi0_A DNA gyrase subunit A; b 20.0 7.1E+02 0.024 25.4 29.0 161 860-1026 95-277 (307)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.6e-67 Score=632.61 Aligned_cols=566 Identities=24% Similarity=0.371 Sum_probs=472.2
Q ss_pred eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
.++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++||||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence 355679999999999999995 999999999999995 566654 47899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
|++||+++.|++|+|||+. ++.+. ++.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999964 45444 6889999999999999999 79999999999999954 4556677889999
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
|.++.+++ ++..+++++.++.+++|+... ........+...+..+.++|++ .++++
T Consensus 142 v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---------------------~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG---------------------QTIAS 197 (577)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTS---------------------SCEEE
T ss_pred eeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCC---------------------CEEEE
Confidence 99998765 457899999999999998653 3333444455555555555554 47999
Q ss_pred EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
++.|+.|++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------ 266 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------ 266 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred EcCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence 999999999996 56777777766 4479999999999999999999999999964 3 45555655544322
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
...+.+++..+++++.|+.+++|+... .....+ .+|.
T Consensus 267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~ 303 (577)
T 2ymu_A 267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS 303 (577)
T ss_dssp -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence 123456788999999999999999653 112221 3488
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
..|.+++|+|+++.+++++.|+.+++|+..... +.. +. +|...+.+++|+|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCC
Confidence 999999999999999999999999999864211 111 12 2788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE
Q 001258 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 910 (1113)
Q Consensus 832 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 910 (1113)
+|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 999998 899999996 5678888999999999999999 8999999999999999995 57788999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecc
Q 001258 911 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW 989 (1113)
Q Consensus 911 s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~ 989 (1113)
+||+++|++++.|++|++||.... ......+|. ..|.+++|+||+++|++ +.|+.|++||. +++++..+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 999999999999999999997542 223333444 37899999999999999 58999999995 67777777
Q ss_pred ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258 990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus 990 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
. +|...|++++|+|||++|++++.||.|++||+ +++.+..+. +|.+.|+. ++|+| ||++|++++.||
T Consensus 505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~v~~--~~fs~-dg~~l~s~~~D~ 571 (577)
T 2ymu_A 505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSSVWG--VAFSP-DGQTIASASSDK 571 (577)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSCEEE--EEECT-TSSCEEEEETTS
T ss_pred e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCCEEE--EEEcC-CCCEEEEEeCCC
Confidence 6 88999999999999999999999999999996 577777776 89999985 88999 789999999999
Q ss_pred cEEEEe
Q 001258 1070 GVHVFE 1075 (1113)
Q Consensus 1070 ~v~vW~ 1075 (1113)
+|++||
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-65 Score=619.74 Aligned_cols=576 Identities=14% Similarity=0.129 Sum_probs=452.3
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+.+.+.+++|||||++ |++++ ++.|+|||+.+++... .+.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5788999999999995 88877 5799999998877655 4789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC----CcEEEEeCCCCceeeEeeccCcCE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
+|+.|++|+|||+.+++.. ...++.+|.+.|.+++|+|+++ .|++++.+ ++|++|| .++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765543 2236789999999999999999 67777654 3677776 577788899999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.+++|++... ..|++|+.|++|++||..+.+....+..|...|.+++|+|+|+ +|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence 9999876532 3699999999999999887666667777777777777777765 79999
Q ss_pred ecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1113)
+.|++|++||+.+++.+..+... +|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988877421 34568999999999999999999999999999887 4444443211000
Q ss_pred CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1113)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1113)
........++..+++++.|+.+++|+..... .... .
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~----~ 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQV----R 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEE----E
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceE----E
Confidence 0000111256789999999999999976532 1111 1
Q ss_pred ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s 827 (1113)
.+|...|.+++|+|+|+.|++++.|+.|++||+... ....... ..|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------------------~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------------------ISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------------CEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----------------------ceeeecc--cCCcceEEEEEEC
Confidence 358899999999999999999999999999987632 2211111 2388899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258 828 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
+++. +++++ |+++++|++.++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8775 55555 99999999886543221 011233567899999 78777766 567899998 344 45554 888
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCc
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~ 982 (1113)
.+++++|+|||++|++++.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 99999999999999999999999999998753211 111 2333 47999999999999999 5899999999988
Q ss_pred -cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce-e-eecCCCcccCCCc-ccCccceEEEEeCCC
Q 001258 983 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGV-SSNVHPLVIAAHPQE 1058 (1113)
Q Consensus 983 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~-~-~~~~~~~~~~~gh-~~~v~~i~~~~~p~d 1058 (1113)
+++.......+|...|.+++|+|||++|++|+.|++|++||+.++.. . ..+. +| .+.|.. ++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~~--v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVNS--VIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEEE--EEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCeeE--EEEcC-C
Confidence 66655423335999999999999999999999999999999988653 2 2333 78 777885 88888 6
Q ss_pred CCEEEEEeCCCcEEEEecc
Q 001258 1059 PNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1059 ~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
+. |++++.|++|++|+++
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.2e-61 Score=580.64 Aligned_cols=540 Identities=15% Similarity=0.192 Sum_probs=427.0
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|++++|||||++ ||+|+.||+|+|||+.+++..... .+.+|.+.|.+++|+|||
T Consensus 54 ~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTS
T ss_pred EecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCC
Confidence 34469999999999999995 999999999999999765543211 367899999999999999
Q ss_pred CeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258 433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 433 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 508 (1113)
++||+++.+ +.|++|| +++... ++.+|...|++++|+|++.. .|++|+.|++|++||..+++++.++.+|
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H 189 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEH 189 (611)
T ss_dssp CEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred CEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence 999998865 4677777 454444 68899999999999999874 5999999999999999999999999999
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-------CCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
...|.+++|++ ++.+|++++.|++|++||+.+++....+. .|...|.+++|+|+
T Consensus 190 ~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd----------------- 250 (611)
T 1nr0_A 190 TKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD----------------- 250 (611)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-----------------
T ss_pred cCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-----------------
Confidence 99999999875 56899999999999999998877665552 34555555555555
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1113)
+.+|++++.|++|++||+.+++++..+..+.. ...+..+.| +++.+++++.|+.+++|+..++ .....+.+|
T Consensus 251 ----g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh 323 (611)
T 1nr0_A 251 ----GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGH 323 (611)
T ss_dssp ----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCC
T ss_pred ----CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCC
Confidence 45799999999999999999998888764321 112334555 7889999999999999999877 466666676
Q ss_pred cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1113)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1113)
...+.. ..+.+++..+++++.|++|++||+......
T Consensus 324 ~~~v~~-----------------------------------------l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~--- 359 (611)
T 1nr0_A 324 NKAITA-----------------------------------------LSSSADGKTLFSADAEGHINSWDISTGISN--- 359 (611)
T ss_dssp SSCEEE-----------------------------------------EEECTTSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred CCCEEE-----------------------------------------EEEeCCCCEEEEEeCCCcEEEEECCCCcee---
Confidence 654332 234567899999999999999999864321
Q ss_pred eecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1113)
Q Consensus 741 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 820 (1113)
. .....|...|.+++|++++ .+++++.|+.+++|+.......... .... .....
T Consensus 360 -~--~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-----------------~~~~-----~~~~~ 413 (611)
T 1nr0_A 360 -R--VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-----------------AVAN-----KLSSQ 413 (611)
T ss_dssp -E--CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------CCEE-----ECSSC
T ss_pred -e--ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------eeee-----ecCCC
Confidence 1 1113488899999999876 5889999999999987643211000 0000 02344
Q ss_pred ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee--eeee
Q 001258 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL 898 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l 898 (1113)
+.+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|+.|++||+.+++. +..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~- 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT- 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence 6789999999999888899999998 333 45554 777899999999 899999999999999999987653 234
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEE
Q 001258 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1113)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~ 976 (1113)
.+|...|++++|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|+.|+
T Consensus 488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence 68999999999999999999999999999999987 332110 0122243 47999999999999999 5899999
Q ss_pred EEeCCccceeeccccCCC-CCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258 977 IFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
+||+.++.........+| ...|.+++|+||++ |++++.|++|++|+++
T Consensus 562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999998763321122378 89999999999999 9999999999999974
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-60 Score=575.76 Aligned_cols=524 Identities=23% Similarity=0.364 Sum_probs=438.7
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|++++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|.+++|+||+
T Consensus 52 ~l~gh~~~V~~l~fspdg~~-las~~~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~ 110 (577)
T 2ymu_A 52 TLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDG 110 (577)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCC
Confidence 33459999999999999995 999999999999996 455554 478899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
++|++++.|+.+++|+....... ...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|
T Consensus 111 ~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v 183 (577)
T 2ymu_A 111 QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 183 (577)
T ss_dssp SEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCE
T ss_pred CEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcce
Confidence 99999999999999998765432 4678999999999999999 6899999999999994 555667778899999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.++++++ ++.++++++.||.|++||.. .+....+..+...|.+++|+|+++ +|+++
T Consensus 184 ~~~~~~~--~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~ 239 (577)
T 2ymu_A 184 WGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASA 239 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEE
T ss_pred eeeeecC--CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEE
Confidence 9999764 55799999999999999964 455556666777777777666665 69999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
+.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+... +....+.+|...+..
T Consensus 240 ~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~------ 308 (577)
T 2ymu_A 240 SDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWG------ 308 (577)
T ss_dssp ETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEE------
T ss_pred eCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEE------
Confidence 99999999996 56777777765 45799999999999999999999999999643 455566665543321
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
..+.+++..+++++.|+.+++|+.... ....+ ..|..
T Consensus 309 -----------------------------------~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~ 345 (577)
T 2ymu_A 309 -----------------------------------VAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSS 345 (577)
T ss_dssp -----------------------------------EEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSS
T ss_pred -----------------------------------EEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCC
Confidence 234567889999999999999997642 22222 34788
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
.+.+++|+|+++.+++++.|+.+++|+... ..+.. +. .|...|.+++|+|++++
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCE
Confidence 999999999999999999999999998531 11111 12 27889999999999999
Q ss_pred EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1113)
|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 400 l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 99998 899999996 5678888999999999999999 8999999999999999996 567888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccc
Q 001258 912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 990 (1113)
Q Consensus 912 ~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~ 990 (1113)
||+++|++++.|++|++||... + ......+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus 477 pd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp TTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 9999999999999999999643 2 233444554 47999999999999999 58999999996 677777776
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 991 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
+|...|++++|+|||++|++++.|++|++||
T Consensus 547 --~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 --GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8999999999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-61 Score=634.42 Aligned_cols=596 Identities=15% Similarity=0.171 Sum_probs=492.5
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|++++|||+|++ +++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence 34469999999999999995 9999999999999999998776 367999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
++||+|+.|++|+|||+.+++.+. ++.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 78899999999999997655589999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC-------------CCceEEEEEccCCCeEEec--------
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG-------- 571 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~~~~-------- 571 (1113)
.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|..++.+
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 9999876 4579999999999999999887665544321 2367788999998855443
Q ss_pred -------------cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258 572 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 572 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 638 (1113)
.+...+..++|+|++.++++++.+|.|++||+.++..+..+..| ...|.+++|+|+++++++++.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEET
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeC
Confidence 34457788999999999999999999999999999999888766 457999999999999999999
Q ss_pred CCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCccee
Q 001258 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1113)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1113)
||.|++|++.+............. .....+....++
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEI--------------------------------------------DVVFQENETMVL 938 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEE--------------------------------------------EEEEETTEEEEE
T ss_pred CCeEEEEEccccceeeeeccccee--------------------------------------------eEEEcCCCcEEE
Confidence 999999998654111100000000 001112233444
Q ss_pred eccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCe
Q 001258 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1113)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1113)
.....+.+.+|...... .. ......+.+++++|+++.+++++.+|.+++|++...
T Consensus 939 ~~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~--------------- 993 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--------------- 993 (1249)
T ss_dssp EEESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---------------
T ss_pred EecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---------------
Confidence 55555666666654321 11 114567999999999999999999999999987632
Q ss_pred ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1113)
Q Consensus 799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 877 (1113)
..... +. +|...|.+++|+|++++|++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++
T Consensus 994 -------~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A 994 -------RVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp -------SCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred -------ceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence 21111 12 3889999999999999999998 8999999999987764 557889999999999 65 5678
Q ss_pred EecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258 878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1113)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1113)
++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. .....+|. ..|.+
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence 99999999999999999999999999999999999999999999999999999988653 33444554 47999
Q ss_pred EEEccCCcEEEE-EcCCeEEEEeCCccceeeccc-------cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
++|+|||++|++ +.|+.|++||+.+++.+..+. ..+|...|++++|+|||++|++++ |.|++||+.+++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 999999999999 588999999999999877651 136889999999999999999885 8999999999998
Q ss_pred eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
+..+. +|...|.. ++|+| ||.+|++++.||.|++|++.
T Consensus 1211 ~~~~~-------~~~~~i~~--~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1211 SQTFY-------TNGTNLKK--IHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCC-------CSSCCCCC--CEECS-SSCCEEEECTTCCEEEECCC
T ss_pred eeeee-------ccCCcccE--EEECC-CCCEEEEecCCcEEEEEeec
Confidence 87765 67777876 78888 78999999999999999975
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-58 Score=563.94 Aligned_cols=562 Identities=12% Similarity=0.151 Sum_probs=459.7
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc----ceeEeeeeeeeccCCCCcccccccccCCCcc-eEEEEEcC
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 430 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 430 (1113)
.|.+.|++++|||||++ |++|+ ++.|+|||+.++ +... .+.+|.+. |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 48899999999999995 77777 889999999987 5554 47899999 99999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCc-----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC----CcEEEEeCCCC
Q 001258 431 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 499 (1113)
Q Consensus 431 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~ 499 (1113)
++++||+|+.||.|+|||+.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999998651 1223346788999999999999999 78888877 6888887 67
Q ss_pred ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC---ceEEEEEccC-CCeEEeccccC
Q 001258 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSAD-GTRTYQGFRKR 575 (1113)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~~~~~~~~~ 575 (1113)
+.+..+.+|...|.+++|++... .++++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------- 220 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--------- 220 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC---------
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC---------
Confidence 88899999999999999876542 3899999999999999988777777766666 6666666665 54
Q ss_pred ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC--CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
++++++.|+.|++||+.+++.+..+... .+...|.+++|+ ++++|++++.|+.|++||+.++ +.
T Consensus 221 ------------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~ 286 (615)
T 1pgu_A 221 ------------FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KC 286 (615)
T ss_dssp ------------EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EE
T ss_pred ------------EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cE
Confidence 7999999999999999999998888211 234579999999 9999999999999999999887 55
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
...+..+...... .......+++..+++++.++.+++|++..
T Consensus 287 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 287 VQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 5555443211000 00011123678899999999999999875
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
... ... + .+|...|.+++| |+ +++++.||.+++|++. . +.
T Consensus 329 ~~~---~~~--~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~----~~ 368 (615)
T 1pgu_A 329 DEV---LKT--I--SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S----MH 368 (615)
T ss_dssp EEE---EEE--E--CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----EE
T ss_pred CcE---EEE--E--eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----hc
Confidence 221 111 1 348899999999 88 9999999999998754 0 11
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+.+|++.++
T Consensus 369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~ 437 (615)
T 1pgu_A 369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTG 437 (615)
T ss_dssp -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTC
T ss_pred -CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCC
Confidence 238899999999 6677777777 9999999998765433 688999999 88888877 8899999999999
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 970 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~ 970 (1113)
+.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....++. ..|.+++|+|+|++|++ +
T Consensus 438 ~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 438 DIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGD 507 (615)
T ss_dssp CEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEE
T ss_pred ceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcC
Confidence 9888886 88999999999 889999999 9999999998854321 2333333 47999999999999999 4
Q ss_pred cCCeEEEEeCCccceeeccccCC-CCCCeeEEEECC----------CCCEEEEEeCCCcEEEEecCCC-ceeeecCCCcc
Q 001258 971 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAY 1038 (1113)
Q Consensus 971 ~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~ 1038 (1113)
.|+.|++||+.+++.+..+. + |...|++++|+| ++++|++++.||.|++||+.++ +.+..+.
T Consensus 508 ~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---- 581 (615)
T 1pgu_A 508 VMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN---- 581 (615)
T ss_dssp TTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT----
T ss_pred CCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh----
Confidence 89999999999999988765 4 899999999999 9999999999999999999998 6776666
Q ss_pred cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
+|.+.|.. ++|+| ++. |++++.||+|++|++.+
T Consensus 582 ---~h~~~v~~--l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 ---AHKDGVNN--LLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ---SSTTCEEE--EEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ---cCccceEE--EEEcC-CCC-eEEecCCceEEEEeeec
Confidence 88888885 88888 677 99999999999999976
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-57 Score=567.05 Aligned_cols=638 Identities=11% Similarity=0.095 Sum_probs=438.7
Q ss_pred eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 44568999999999999999 59999999999999988766543 234788999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee---------
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 502 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~--------- 502 (1113)
|++|++++.|++|+|||+.+++.+. ++. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999988765 443 778999999999999 7999999999999999988764
Q ss_pred --eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC--eEEeccccCcee
Q 001258 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 578 (1113)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i~ 578 (1113)
..+.+|.+.|.+++|+|. ++..+++|+.||.| +||+++......+..+...- .+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCeE
Confidence 234679999999999874 23689999999999 99999876665554431000 00000 000112234577
Q ss_pred EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-----C-----------CCCCCcCeEEEC----CCC-CEEEEEE
Q 001258 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-----D-----------GGLPASPRIRFN----KDG-CLLAVST 637 (1113)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~-----------~~~~~v~~~~~s----~~~-~~l~~~~ 637 (1113)
.++|+|++.+|++++.||.|++||+.+++++..... + .+...|.+++|+ |++ .++++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 778888888999999999999999999988764221 2 123368999995 543 5677776
Q ss_pred CC-----CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCC---CCCCcc
Q 001258 638 ND-----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG---MNGDVR 709 (1113)
Q Consensus 638 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 709 (1113)
.+ +.+.+|++..... + .. +...... .+ .. ...............+..... ..+...
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~-~-~~-~s~~~~~--------~~--~~---~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~ 359 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPR-Y-SI-TSYEGMK--------NY--YA---NPKQMKIFPLPTNVPIVNILPIPRQSPYFA 359 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCC-G-GG-CCHHHHH--------HH--HH---SCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred CCCCCCCceEEEEecCCCCC-c-cc-cchhhhh--------hh--hc---CccceEEEecCCCCceEEEEECCCCCCCcC
Confidence 65 3788888531100 0 00 0000000 00 00 000000000000000000000 000001
Q ss_pred ccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCC
Q 001258 710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789 (1113)
Q Consensus 710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 789 (1113)
...+...+++++.|+.+++|++..................|...|++++|++... .+|+......
T Consensus 360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~---- 424 (902)
T 2oaj_A 360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSAA---- 424 (902)
T ss_dssp HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHTT----
T ss_pred CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhcc----
Confidence 1123446788888999999998643211110000011123557888888865332 2233210000
Q ss_pred ceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eee---------cC
Q 001258 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MP 857 (1113)
Q Consensus 790 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~---------~~ 857 (1113)
+.. ...+.+ |...+.+++|+|++++|++|+ |++|++||+.++... ..+ .+
T Consensus 425 ---------------~~~-~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 425 ---------------QNK-DYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp ---------------BCC-CCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred ---------------cCC-CCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 000 011223 777888899999999999999 999999999887432 111 17
Q ss_pred CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---------------------------------------------
Q 001258 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--------------------------------------------- 892 (1113)
Q Consensus 858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--------------------------------------------- 892 (1113)
|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 487 h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 487 KELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 888999999999 9999999999999999999876
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC-CCCCCCCCCceEEEc-----cCC--
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ-- 964 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s-----pdg-- 964 (1113)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||+++............. +|. ..|++++|+ |||
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCc
Confidence 2467888999999999999999 9999999999999999875432211112232 554 479999999 886
Q ss_pred -cEEEE-EcCCeEEEEeC---CccceeeccccC---CCCCCeeEEE-EC----------------------CCCCEEEEE
Q 001258 965 -IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYAC 1013 (1113)
Q Consensus 965 -~~l~~-~~d~~v~v~d~---~~~~~~~~~~~~---~h~~~v~~l~-~s----------------------~dg~~l~s~ 1013 (1113)
++|++ +.|++|++||+ .+|++...+... .|.++|.+++ |+ +++.+|+++
T Consensus 642 ~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~ 721 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG 721 (902)
T ss_dssp EEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC
T ss_pred ceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe
Confidence 78888 58999999999 888887776531 1357888877 65 455555544
Q ss_pred eCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE-EE------EeCCCCCEEEEEeCCCcEEEEeccCCC--cccc
Q 001258 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV-IA------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWG 1084 (1113)
Q Consensus 1014 ~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~-~~------~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~ 1084 (1113)
+..|+||++.+++..++.. +|...+..+. +. |++ ++..|++++.||+|++|++++.+ ..+.
T Consensus 722 --~~~ir~~~~~~~k~~~k~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~ 791 (902)
T 2oaj_A 722 --FDDIRLITLGKSKSTHKGF-------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEH 791 (902)
T ss_dssp --SSEEEEECTTCCCEEEEEC-------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --ccceEEEeCccccceeeEc-------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhcc
Confidence 8899999999999887764 5554445431 23 555 67899999999999999999999 4445
Q ss_pred CCCC
Q 001258 1085 VPPP 1088 (1113)
Q Consensus 1085 ~~~~ 1088 (1113)
.++.
T Consensus 792 ~~~~ 795 (902)
T 2oaj_A 792 IPFP 795 (902)
T ss_dssp CSSC
T ss_pred CCcc
Confidence 4444
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-56 Score=593.70 Aligned_cols=568 Identities=17% Similarity=0.217 Sum_probs=467.3
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. ++.+|.+.|.+++|+|+++ ++++++.|++|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999998766 6889999999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|+.+++++..+.+|...|.+++|++..++.++++|+.||.|++||+.++.....+..|...|.+++|+|+++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------- 756 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-------- 756 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence 999999999999999999999999877778999999999999999999888878887877777777777665
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC-----------CCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 643 (1113)
++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 79999999999999999988777664321 123688999999999999988 58999
Q ss_pred EEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1113)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1113)
+|+..++........+|...+. ...+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~-----------------------------------------~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQ-----------------------------------------YCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCC-----------------------------------------EEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCceE-----------------------------------------EEEEcCCCCEEEEEeCC
Confidence 9999988433333334333221 23345678899999999
Q ss_pred CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee-----------
Q 001258 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT----------- 792 (1113)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------- 792 (1113)
+.+++|++...... . .+ .+|...|.+++|+|+++.+++++.|+.+++|++............
T Consensus 862 g~v~vwd~~~~~~~---~--~~--~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKV---A--DC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEE---E--EE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCcee---e--ec--CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999863221 1 11 348899999999999999999999999999998643211110000
Q ss_pred ---e----eecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE
Q 001258 793 ---A----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 864 (1113)
Q Consensus 793 ---~----~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 864 (1113)
. ...+.++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 0 00122333333333221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001258 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 944 (1113)
Q Consensus 865 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~ 944 (1113)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++.. ..
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence 99999 8999999999999999999998876 456899999999999975 6788999999999999986543 22
Q ss_pred CCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258 945 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 945 ~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
..+|. ..|.+++|+|||++++++ .|+.|++||+.+++.+..+. +|...|++++|+|||++|++|+.||.|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 33343 378999999999999994 89999999999999888776 7899999999999999999999999999999
Q ss_pred cCCCceeeecCCCcc--cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258 1024 AANLKLRCRINPSAY--LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus 1024 ~~~~~~~~~~~~~~~--~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
+.+++.+..+.+... ...+|.+.|.. ++|+| ||.+|++++ |+|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATHGGWVTD--VCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------CCSCCCE--EEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEeccccccccccccCceEEE--EEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 999988876532111 11367788885 88999 788998885 9999999999883
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.7e-54 Score=526.50 Aligned_cols=523 Identities=13% Similarity=0.161 Sum_probs=437.3
Q ss_pred ceeEeccCCCC-cEEEEEcC--CCCeEEEEEecCCcEEEEecCCc------ceeEeeeeeeeccCCCCcccccccccCCC
Q 001258 350 TVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPG 420 (1113)
Q Consensus 350 ~~~~~~~h~~~-V~~~~~sp--dg~~ll~~gs~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 420 (1113)
......+|.+. |++++|+| +|++ |++|+.||.|+|||+.++ +.... ..+.+|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~ 116 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLA 116 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCS
T ss_pred cceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhccc
Confidence 34455569999 99999999 9995 999999999999999765 11111 1366799
Q ss_pred cceEEEEEcCCCCeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001258 421 VSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 496 (1113)
..|.+++|+|++++|++++.+ +.|.+|| .++.+. .+.+|...|.+++|+|+++. ++++++.|+.|++||+
T Consensus 117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQG 190 (615)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEET
T ss_pred ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeC
Confidence 999999999999999999988 6888888 444444 68899999999999999975 6999999999999999
Q ss_pred CCCceeeEeeccCc---CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-e---CCCCceEEEEEccCCCeEE
Q 001258 497 TNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 497 ~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~ 569 (1113)
.+++++..+.+|.. .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ . .+...|.+++|+ ++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--- 265 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ--- 265 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS---
T ss_pred CCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC---
Confidence 99999999999999 9999998754 1579999999999999999988777766 4 666677777766 554
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
++++++.|+.|++||+.+++.+..+..+.. ...+.++.|+ +++++++++.||.|++||+
T Consensus 266 ------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 266 ------------------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp ------------------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred ------------------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 799999999999999999999888876521 1346677775 8999999999999999999
Q ss_pred CCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCcee
Q 001258 648 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 727 (1113)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 727 (1113)
.++ +.+..+.+|...+.. ..+ ++ +++++.|+.|+
T Consensus 327 ~~~-~~~~~~~~~~~~v~~-----------------------------------------~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 327 GHD-EVLKTISGHNKGITA-----------------------------------------LTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp TEE-EEEEEECCCSSCEEE-----------------------------------------EET-TT---TEEEETTSCEE
T ss_pred CCC-cEEEEEeCCCCCEEE-----------------------------------------EEe-cC---cEEECCCCeEE
Confidence 886 666666666554331 112 22 89999999999
Q ss_pred eEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccc
Q 001258 728 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 807 (1113)
Q Consensus 728 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~ 807 (1113)
+|++. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 361 ~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~---------------------- 405 (615)
T 1pgu_A 361 EWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF---------------------- 405 (615)
T ss_dssp ETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC----------------------
T ss_pred EEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc----------------------
Confidence 99987 111 348899999999 6677899999999999998653211
Q ss_pred cccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CCcEEE
Q 001258 808 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 886 (1113)
Q Consensus 808 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~i 886 (1113)
...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+ +++|++++. ||.|++
T Consensus 406 ----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 406 ----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQV 471 (615)
T ss_dssp ----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEE
T ss_pred ----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEE
Confidence 125788999999999999889999999999999888887 78889999998 679999999 999999
Q ss_pred EEcccceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEcc--
Q 001258 887 YNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ-- 962 (1113)
Q Consensus 887 wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp-- 962 (1113)
||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+++.. ....+ |. ..|.+++|+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~---~~v~~~~~sp~~ 543 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRT---SKINAISWKPAE 543 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCS---SCEEEEEECCCC
T ss_pred EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCC---CceeEEEEcCcc
Confidence 999988766 778899999999999999999999999999999999986543 22333 33 4899999999
Q ss_pred --------CCcEEEE-EcCCeEEEEeCCcc-ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 963 --------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 963 --------dg~~l~~-~~d~~v~v~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
++++|++ +.|+.|++||+.++ +.+..+. +|...|++++|+||++ |++++.||.|++|++++
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999 58999999999998 6666665 7899999999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-51 Score=516.61 Aligned_cols=593 Identities=10% Similarity=0.055 Sum_probs=411.4
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+.|...|++++|+| |+ +|++++.|++|+|||+.+++.+.. +. |.+.|++++|+|
T Consensus 51 ~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~~~V~~v~~sp 108 (902)
T 2oaj_A 51 VVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VPGKITSIDTDA 108 (902)
T ss_dssp EEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CSSCEEEEECCT
T ss_pred EEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CCCCEEEEEECC
Confidence 345566889999999999 88 599999999999999999887653 22 567899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeee--------eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQH--------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~--------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 502 (1113)
++++|++|+.||+|++||+.+++..... ..+.+|.+.|.+++|+|++.. .+++|+.|++| +||+++++++
T Consensus 109 ~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 109 SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceE
Confidence 9999999999999999999988753110 235689999999999997543 68999999999 9999999999
Q ss_pred eEeecc------------------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-----CC-------
Q 001258 503 YIFEGH------------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----AP------- 552 (1113)
Q Consensus 503 ~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~------- 552 (1113)
..+.+| ...|.+++|+++ |.+|++++.||.|++||+++++...... .+
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~ 264 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI 264 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence 888766 577999998754 6899999999999999999876544211 11
Q ss_pred ------CCceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecC-----CcEEEEECC----------------
Q 001258 553 ------GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDD-----FSIKFWDMD---------------- 604 (1113)
Q Consensus 553 ------~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d-----g~i~iwd~~---------------- 604 (1113)
...|.+++|++.. +|++ ..+++|+.+ ..+.+|++.
T Consensus 265 ~~~~~~~~~V~~v~w~~~~-----------------~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 265 RDSSTNAAKISKVYWMCEN-----------------NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp CCCSSCCCEEEEEEEEECS-----------------STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred CCCccccCCeeEEEEEecC-----------------CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 1234444443211 2332 346666655 378899842
Q ss_pred --CCceEEEEccCCCCCCcCeEEECC----------CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 605 --SVQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 605 --~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
+.+....+... +...|.++.+.+ +...+++++.||.|++|++.++.........+...... .
T Consensus 328 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~-----~ 401 (902)
T 2oaj_A 328 YANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL-----R 401 (902)
T ss_dssp HHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB-----T
T ss_pred hcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc-----C
Confidence 22334444321 123567777755 34578999999999999997763222211111000000 0
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
+.+.. +.. .+...++|+.......... .+-.+|..
T Consensus 402 ~~v~~---------------------------------------~~~--s~~~~~~w~~~~~~~~~~~----~~l~G~~~ 436 (902)
T 2oaj_A 402 PLATT---------------------------------------SMA--ASVPNKLWLGALSAAQNKD----YLLKGGVR 436 (902)
T ss_dssp TBEEE---------------------------------------EEE--EEEEHHHHHHHHHTTBCCC----CSCCCSBC
T ss_pred CCeeE---------------------------------------EEE--EEcCHHHHHHHHhcccCCC----CcccCCcC
Confidence 00000 000 0011223332210000000 11134677
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
.+.+++|+|+++.+++++.|++|++||+..+...... ++... +.. ..+.+|...|.+++|+||+++
T Consensus 437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~---------~~~~~----l~~-~~~~~h~~~V~svafspdg~~ 502 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA---------SFEVN----LSR-TLNKAKELAVDKISFAAETLE 502 (902)
T ss_dssp CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB---------CEEEE----HHH-HTTCSSSCCEEEEEEETTTTE
T ss_pred CCCcccccccCcEEEEecCCCcEEEEECCCccccCCc---------eEEee----chh-hcCCCCCCceeEEEecCCCCe
Confidence 7888999999999999999999999998754221000 00000 000 001248889999999999999
Q ss_pred EEEEe-CCeEEEEECCCCc---------------------------------------------eeeeecCCCCCeeEEE
Q 001258 833 VMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPPAATFLA 866 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~i~~l~ 866 (1113)
||+|+ ||+|+|||+.+++ ++..+.+|...|++++
T Consensus 503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva 582 (902)
T 2oaj_A 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN 582 (902)
T ss_dssp EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence 99999 9999999998652 3677888999999999
Q ss_pred EecCCCcEEEEEecCCcEEEEEcccceeee-----eec-ccccCeEEEEEc-----CCC---CEEEEEeCCCcEEEEeC-
Q 001258 867 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLCVWSS- 931 (1113)
Q Consensus 867 ~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~L~s~s~D~~v~iwd~- 931 (1113)
||| || +||+|+.|++|+|||+.+...+. .+. +|.+.|++|+|+ ||| ++|++++.|++|++||+
T Consensus 583 fSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 583 NSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp ECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 999 88 99999999999999998876653 343 899999999999 885 89999999999999999
Q ss_pred --CCCccccccccccCCCCCC--CCCCCceEE-Ec----------------------cCCcEEEEEcCCeEEEEeCCccc
Q 001258 932 --DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFETTKLE 984 (1113)
Q Consensus 932 --~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~s----------------------pdg~~l~~~~d~~v~v~d~~~~~ 984 (1113)
.+++.. ..+.++.. ....|..++ |+ ++|..|++ .+..++||++.+++
T Consensus 661 p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k 734 (902)
T 2oaj_A 661 PASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSK 734 (902)
T ss_dssp ECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCC
T ss_pred cCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccceEEEeCcccc
Confidence 554432 12222210 013455554 55 45555554 48899999999999
Q ss_pred eeeccccCCCCCCeeEE---E------ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEe
Q 001258 985 CVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAH 1055 (1113)
Q Consensus 985 ~~~~~~~~~h~~~v~~l---~------~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~ 1055 (1113)
+.+... .|.-.+.++ . |++++..|++++.||+|++|++.+++.+..+....... ...+.. ..|.
T Consensus 735 ~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~---~~~~~~--~~~~ 807 (902)
T 2oaj_A 735 STHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA---AKYITE--SSVL 807 (902)
T ss_dssp EEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC---HHHHTT--CEEC
T ss_pred ceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc---cccccc--eEEc
Confidence 987764 445556665 5 78899999999999999999999999998876422210 011122 4555
Q ss_pred CCCCCEEEEEeC
Q 001258 1056 PQEPNEFALGLS 1067 (1113)
Q Consensus 1056 p~d~~~l~s~~~ 1067 (1113)
+ +|+.+.-.+.
T Consensus 808 ~-~G~~~~~~~~ 818 (902)
T 2oaj_A 808 R-NGDIAIRVSE 818 (902)
T ss_dssp T-TSCEEEECSS
T ss_pred C-CCCEEEEeCh
Confidence 5 6777665543
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-45 Score=466.05 Aligned_cols=465 Identities=17% Similarity=0.221 Sum_probs=372.1
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
.+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+|++
T Consensus 10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence 449999999999999995 9999999999999999988776 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEE
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 513 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~ 513 (1113)
|++|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.|++|++||+.++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999998665 6789999999999999999 7999999999999999987 67788899999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
+++|++. ++..+++++.||.|++||+.+......+..+. ..+..++|+|. +++.+++++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~~~ 204 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMITA 204 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-------------------TTCCEEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-------------------CCCCEEEEE
Confidence 9998762 44799999999999999998766655544333 44444444441 055689999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
+.||.|++||+.+++.+..+..+ ...|.+++|+|+++++++++.||.|++||+.++ +....+.
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~-------------- 267 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN-------------- 267 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC--------------
T ss_pred eCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee--------------
Confidence 99999999999999999888766 447999999999999999999999999998776 2222221
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
.+..
T Consensus 268 ----------------------------------------------------------------------------~~~~ 271 (814)
T 3mkq_A 268 ----------------------------------------------------------------------------VGLE 271 (814)
T ss_dssp ----------------------------------------------------------------------------CSSS
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 1456
Q ss_pred ceEEEEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 753 KISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 753 ~i~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
.+.+++|+|++.. +++++.++.+.+|++. .....+.++|+|+
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~g~ 314 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPVGK 314 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSSSE
T ss_pred cEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCCCC
Confidence 7899999999875 3666667778888643 1234578889999
Q ss_pred EEEEEe-CC---eEEE------EECCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 832 YVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 832 ~l~~~s-dg---~i~v------wd~~~~~~~----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
.+++++ +. .+.. |++..+... ..+..+...+.+++|+| +++++++++ ||.+.+|++.....
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~--- 389 (814)
T 3mkq_A 315 LVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN--- 389 (814)
T ss_dssp EEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE---
T ss_pred EEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc---
Confidence 888876 22 1222 333333322 33455667799999999 899999988 89999999865443
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC---cEEEE-EcCC
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHET 973 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---~~l~~-~~d~ 973 (1113)
.+.+.|++++|+||+++|++++.|++|++|+.-. ++. ..+..++|+|+| .+|++ +.|+
T Consensus 390 --~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 390 --KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDG 451 (814)
T ss_dssp --EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETT
T ss_pred --cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCC
Confidence 2456789999999999999999999999996332 111 256788999998 35555 7999
Q ss_pred eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE------eCCCcEEEE
Q 001258 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1022 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------~~Dg~v~vw 1022 (1113)
.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|
T Consensus 452 ~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 99999999999988875 3332 99999999999999 555555454
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.6e-44 Score=450.93 Aligned_cols=466 Identities=17% Similarity=0.214 Sum_probs=376.4
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|.+++|||+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999988666 6789999999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEcc-CCCeEEecc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSA-DGTRTYQGF 572 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~ 572 (1113)
|+.+++.+..+.+|.+.|.+++|+++ +.+|++++.||.|++||+.+. .....+..+...+.+++|+| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~------- 153 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP------- 153 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE-------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC-------
Confidence 99999999999999999999998754 479999999999999999876 33445666666677777666 44
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||..++
T Consensus 154 --------------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 154 --------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp --------------EEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred --------------CEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 369999999999999999888877776543 24789999999 9999999999999999998776
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
.....+.
T Consensus 219 -~~~~~~~------------------------------------------------------------------------ 225 (814)
T 3mkq_A 219 -SCVATLE------------------------------------------------------------------------ 225 (814)
T ss_dssp -EEEEEEE------------------------------------------------------------------------
T ss_pred -cEEEEEc------------------------------------------------------------------------
Confidence 2222221
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
.|...|.+++|+|+++.+++++.||.|++|++... .....
T Consensus 226 ------------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~----------------------~~~~~ 265 (814)
T 3mkq_A 226 ------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY----------------------KVEKT 265 (814)
T ss_dssp ------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----------------------SEEEE
T ss_pred ------------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------------cEEEE
Confidence 15678999999999999999999999999987532 21111
Q ss_pred ccCCCCCCCCccEEEEecCCC--EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc---EE
Q 001258 811 DVTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ 885 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~---v~ 885 (1113)
+. .+...+.+++|+|+++ +++++.++.+.+|++.... ..+.++| ++.++++++.+.. +.
T Consensus 266 -~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~ 329 (814)
T 3mkq_A 266 -LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIF 329 (814)
T ss_dssp -EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEE
T ss_pred -ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeee
Confidence 11 2677899999999998 5777779999999976532 3567888 8888888776652 21
Q ss_pred E------EEcccceee----eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC
Q 001258 886 I------YNVRVDEVK----SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1113)
Q Consensus 886 i------wd~~~~~~~----~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1113)
. |++..+... ..+..|...+++++|+|+|++|++++ |+.+.+|++....... .+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i 395 (814)
T 3mkq_A 330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKC 395 (814)
T ss_dssp EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEEC
T ss_pred eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCce
Confidence 1 233333222 34566778899999999999999998 8999999986532211 1367
Q ss_pred ceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC---CEEEEEeCCCcEEEEecCCCceee
Q 001258 956 TRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRC 1031 (1113)
Q Consensus 956 ~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~vwd~~~~~~~~ 1031 (1113)
..++|+|||++++++ .++.+++|+.- .+|...+.+++|+||+ ++|++++.|+.|++||+.+++.+.
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~ 465 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR 465 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence 899999999999995 78999999632 2567789999999999 688999999999999999999998
Q ss_pred ecCCCcccCCCcccCccceEEEEeCCCCCEEEEE------eCCCcEEEEe
Q 001258 1032 RINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1075 (1113)
Q Consensus 1032 ~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~------~~Dg~v~vW~ 1075 (1113)
.+. +|.. .+.|+| ||++|+++ +.++.+.+|.
T Consensus 466 ~~~-------~~~~-----~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 466 RID-------VNAK-----DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EES-------SCEE-----EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEe-------cCCC-----EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 876 4443 589999 78999999 6555555553
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-43 Score=406.73 Aligned_cols=306 Identities=16% Similarity=0.307 Sum_probs=262.4
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
..+|.++|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 346999999999999999 59999999999999999988765 4789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1113)
+|++|+.|++|+|||+.+++++. ++.+|...|.+++|+|++. ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999988665 7889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
+++++ +++.++++|+.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus 239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 99865 556899999999999999999988888899999999999999986532111111 111122334577899999
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCC
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 673 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1113)
.|+.|++||+.++.++..+..| ...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~--------------- 377 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------- 377 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE---------------
T ss_pred CCCeEEEEECCCCceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc---------------
Confidence 9999999999999999998866 447999999999999999999999999998766 3322221
Q ss_pred CcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc
Q 001258 674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753 (1113)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1113)
+|...
T Consensus 378 ---------------------------------------------------------------------------~h~~~ 382 (410)
T 1vyh_C 378 ---------------------------------------------------------------------------AHEHF 382 (410)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 26778
Q ss_pred eEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258 754 ISRLIFTNSGNAILALASNAIHLLWKW 780 (1113)
Q Consensus 754 i~~~~~s~~~~~l~~~~~dg~i~vw~~ 780 (1113)
|.+++|+|++..|++++.|+.|++|+.
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999975
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=372.30 Aligned_cols=306 Identities=21% Similarity=0.347 Sum_probs=262.7
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++... ++.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999998665 7889999999999999999 899999999999999
Q ss_pred CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1113)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 575 (1113)
+.+++++..+.+|...|.+++|+++ +.+|++|+.|++|++||+.++.....+..|...+..+.+++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--------- 247 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--------- 247 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence 9999999999999999999998764 57999999999999999999888878877777777777766665
Q ss_pred ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
++++++.|+.|++||+.++++...+..|. ..|.+++|+|++.+. ...
T Consensus 248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~-------------------~~~ 294 (410)
T 1vyh_C 248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYS-------------------SIS 294 (410)
T ss_dssp ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGG-------------------GGG
T ss_pred ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCccccc-------------------chh
Confidence 79999999999999999998888887654 468888888765310 000
Q ss_pred ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1113)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1113)
..
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (410)
T 1vyh_C 295 EA------------------------------------------------------------------------------ 296 (410)
T ss_dssp GC------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1113)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 815 (1113)
. +
T Consensus 297 --------------~------------~---------------------------------------------------- 298 (410)
T 1vyh_C 297 --------------T------------G---------------------------------------------------- 298 (410)
T ss_dssp --------------C------------S----------------------------------------------------
T ss_pred --------------c------------c----------------------------------------------------
Confidence 0 0
Q ss_pred CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1113)
........++.+|++|+ |++|++||+.++.++..+.+|...|.+++|+| ++++|++|+.||.|++||+.++++
T Consensus 299 -----~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 299 -----SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp -----CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred -----ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence 00001112467888888 89999999999999999999999999999999 899999999999999999999999
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
+..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999863
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=356.13 Aligned_cols=293 Identities=17% Similarity=0.271 Sum_probs=254.4
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
.+.+|.+.|++++|+|+|++ |++|+.||+|+|||..+++... .+..|...|.+++|+|+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYAPSG 118 (354)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEECTTS
T ss_pred EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEECCCC
Confidence 34459999999999999995 9999999999999999887765 255688899999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce---eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.+|.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence 9999999999999999875421 122335778999999999999999 79999999999999999999999999999
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
..|.+++|++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++. +|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~l 255 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------------------AF 255 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------------------EE
Confidence 999999998887788999999999999999999888777877777777777777665 79
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1113)
++++.|+.|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++ ..+..+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------ 322 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------ 322 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence 9999999999999999888877765554456789999999999999999999999998776 222222
Q ss_pred CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1113)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1113)
.+
T Consensus 323 ------------------------------------------------------------------------------~~ 324 (354)
T 2pbi_B 323 ------------------------------------------------------------------------------FG 324 (354)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------EC
Confidence 12
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWK 779 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~ 779 (1113)
|...|.+++|+|+|++|++++.|+.|++|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 778899999999999999999999999995
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-38 Score=354.46 Aligned_cols=290 Identities=19% Similarity=0.311 Sum_probs=252.0
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTS
T ss_pred eecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCC
Confidence 3445999999999999999 49999999999999999988765 366789999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce-eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|.+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9999999999999999987642 233446889999999999999875 889999999999999999999999999999
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|++. +|++
T Consensus 187 v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~l~s 243 (340)
T 1got_B 187 VMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN---------------------AFAT 243 (340)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS---------------------EEEE
T ss_pred eEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC---------------------EEEE
Confidence 99999875 457999999999999999998887777777777777777776665 7999
Q ss_pred EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
++.||.|++||+++++.+..+..+.....|.+++|+|++++|++|+.|+.|++||+.++ .....+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~-------------- 308 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-------------- 308 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence 99999999999999988888765554557899999999999999999999999998766 222222
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
.+|.
T Consensus 309 ----------------------------------------------------------------------------~~h~ 312 (340)
T 1got_B 309 ----------------------------------------------------------------------------AGHD 312 (340)
T ss_dssp ----------------------------------------------------------------------------ECCS
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 1277
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWK 779 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~ 779 (1113)
..|.+++|+|++..|++++.|+.|++|+
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8899999999999999999999999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=347.45 Aligned_cols=289 Identities=18% Similarity=0.291 Sum_probs=250.3
Q ss_pred cccCCCcceEEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258 415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 490 (1113)
.+.+|.+.|++++|+|+ +++|++|+.|++|+||++.+++.. ....+.+|...|.+++|++++. ++++++.|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~ 103 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAH 103 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCc
Confidence 36789999999999985 679999999999999999876532 3346889999999999999999 8999999999
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
|++||+.+++++..+..|...+.+++|++ ++.+|++++.||.|++||+++......+..+...+.+++|+|+++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~---- 177 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK---- 177 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS----
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC----
Confidence 99999999999999999999999999765 558999999999999999998887777777766666666666665
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 178 -----------------~lasg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 178 -----------------YLASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -----------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred -----------------EEEEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 7999999999999999999999988766 457999999999999999999999999998654
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
.....+
T Consensus 239 -~~~~~~------------------------------------------------------------------------- 244 (321)
T 3ow8_A 239 -NLAGTL------------------------------------------------------------------------- 244 (321)
T ss_dssp -CEEEEE-------------------------------------------------------------------------
T ss_pred -ceeEEE-------------------------------------------------------------------------
Confidence 111000
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
T Consensus 245 -------------------------------------------------------------------------------- 244 (321)
T 3ow8_A 245 -------------------------------------------------------------------------------- 244 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~ 889 (1113)
. +|...|.+++|+|++++|++++ |++|++||+.+++++..+.+|...|.+++|+| ++++|++++.||.|+|||+
T Consensus 245 --~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 245 --S--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp --C--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred --c--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 0 1677788899999999999998 89999999999999999999999999999999 8999999999999999996
Q ss_pred c
Q 001258 890 R 890 (1113)
Q Consensus 890 ~ 890 (1113)
.
T Consensus 320 p 320 (321)
T 3ow8_A 320 P 320 (321)
T ss_dssp C
T ss_pred C
Confidence 4
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=346.43 Aligned_cols=287 Identities=15% Similarity=0.217 Sum_probs=249.6
Q ss_pred ccCCCCcEEEEEcCC----CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 355 LNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 355 ~~h~~~V~~~~~spd----g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++..... .+.+|...|.+++|++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDISH 90 (321)
T ss_dssp TSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEECS
T ss_pred ccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEECC
Confidence 359999999999985 45 5999999999999999876543211 3789999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++....+..|..
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence 99999999999999999999998766 6778999999999999999 799999999999999999999999999999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|.+++|++ ++.+|++|+.||.|++||+++++....+..+...|.+++|+|+++ +|+
T Consensus 166 ~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------------------~l~ 222 (321)
T 3ow8_A 166 FILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------------------LLV 222 (321)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC---------------------EEE
T ss_pred eEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC---------------------EEE
Confidence 999999765 558999999999999999998877777777777777777666665 799
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1113)
+++.|+.|++||+.+++....+..| ...|.+++|+|++++|++++.|++|++||+.++ +.+..+.
T Consensus 223 s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~------------ 287 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF------------ 287 (321)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC------------
T ss_pred EEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc------------
Confidence 9999999999999999998888766 457999999999999999999999999999877 3333322
Q ss_pred CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccc
Q 001258 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1113)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1113)
.|
T Consensus 288 ------------------------------------------------------------------------------~h 289 (321)
T 3ow8_A 288 ------------------------------------------------------------------------------DH 289 (321)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 16
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~ 780 (1113)
...|.+++|+|+++.|++++.|+.|++||.
T Consensus 290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 678999999999999999999999999985
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=364.99 Aligned_cols=339 Identities=15% Similarity=0.200 Sum_probs=272.3
Q ss_pred cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEc----cCCcee---eeeeeeec----------ccCCeeEEEEcCCCC
Q 001258 417 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDEV---RQHLEIDA----------HVGGVNDIAFSHPNK 478 (1113)
Q Consensus 417 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~---~~~~~l~~----------h~~~V~~v~~s~~~~ 478 (1113)
..|.+.|++++|+|+|+ +||+|+.||.|++||+ .+++.+ .....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 887720 01112322 688999999999999
Q ss_pred eeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc---
Q 001258 479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--- 555 (1113)
Q Consensus 479 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 555 (1113)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 799999999999999 78888999999999999999875 4579999999999999999987777666655543
Q ss_pred eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEE
Q 001258 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1113)
Q Consensus 556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 635 (1113)
+....+.+++. .+..++|++++ .+++++.+|.|++||+.+++.+..+..+ ...|.+++|+|++++|++
T Consensus 197 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 197 INAENHSGDGS---------LGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------CC---------CBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred eeeccccCCcc---------eeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence 11111111111 24445555543 4889999999999999999988888765 457999999999999999
Q ss_pred EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1113)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1113)
++.|+.|++||+.++. ....+
T Consensus 265 ~~~d~~i~i~d~~~~~-~~~~~---------------------------------------------------------- 285 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-SQNCF---------------------------------------------------------- 285 (425)
T ss_dssp EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence 9999999999976541 11000
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeee
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1113)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001258 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1113)
Q Consensus 796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~ 874 (1113)
. .|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...+.+++|+| ++++
T Consensus 286 -----------------~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 344 (425)
T 1r5m_A 286 -----------------Y--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK 344 (425)
T ss_dssp -----------------C--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred -----------------c--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence 0 155667788888888 777777 88999999999888888988999999999999 8999
Q ss_pred EEEEecCCcEEEEEcccce--------------------eeeeeccccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 875 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 875 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.|+.|++|+++
T Consensus 345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999888 8899999977 99999999999999999999999999986
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-37 Score=343.81 Aligned_cols=300 Identities=19% Similarity=0.265 Sum_probs=246.6
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
.+|.+.|++++|+|++..+|++|+.|++|++||+.......... ...+.+|...|.+++|+|+|++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--------------VRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE--------------EEEEECCSSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc--------------ceEEeCCcccEEEEEECCCCCE
Confidence 35999999999999874479999999999999987543221111 1147899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. +.++..+.+|...|.+
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence 9999999999999999998765 6889999999999999999 79999999999999985 6678889999999999
Q ss_pred EeeeecC----CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 515 VCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 515 ~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
+++.+.. ++.++++++.|+.|++||+.+......+..|...|.+++|+|+|+ +|+
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~---------------------~l~ 212 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT---------------------LIA 212 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS---------------------EEE
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC---------------------EEE
Confidence 9987643 345899999999999999998777777777777777777777665 799
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1113)
+++.||.|++||+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------- 280 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------- 280 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT-------
T ss_pred EEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc-------
Confidence 9999999999999999998888754 368999999999999988865 5999998765 222222110000
Q ss_pred CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccc
Q 001258 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1113)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1113)
....+
T Consensus 281 ---------------------------------------------------------------------------~~~~~ 285 (319)
T 3frx_A 281 ---------------------------------------------------------------------------YSKAA 285 (319)
T ss_dssp ---------------------------------------------------------------------------CCGGG
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 00125
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
...+.+++|+|+|++|++++.|+.|++|++.+
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 56789999999999999999999999999753
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-37 Score=345.93 Aligned_cols=286 Identities=15% Similarity=0.193 Sum_probs=247.9
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999988665 6788999999999999999 89999999999999
Q ss_pred eCCCC----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 495 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 495 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
|+.++ .....+.+|.+.|.++.|++.. .+++++.|+.|++||+.++.....+..|...|.+++|+|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---- 197 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---- 197 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC----
Confidence 99875 3456788999999999987543 599999999999999998877777777777777777777665
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++++|+.|+.|++||+.++..+..+..| ...|.+++|+|++++|++++.||+|++||+.++
T Consensus 198 -----------------~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 198 -----------------LFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -----------------EEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -----------------EEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 7999999999999999999999988766 447999999999999999999999999998765
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
. .+..+.
T Consensus 259 ~-~~~~~~------------------------------------------------------------------------ 265 (340)
T 1got_B 259 Q-ELMTYS------------------------------------------------------------------------ 265 (340)
T ss_dssp E-EEEEEC------------------------------------------------------------------------
T ss_pred c-EEEEEc------------------------------------------------------------------------
Confidence 1 111000
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
+
T Consensus 266 -------------------~------------------------------------------------------------ 266 (340)
T 1got_B 266 -------------------H------------------------------------------------------------ 266 (340)
T ss_dssp -------------------C------------------------------------------------------------
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
..+...|.+++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+| ++.+||+|+.||.|+|||
T Consensus 267 ----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 ----DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ----CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 00234577888999999999988 89999999999999999999999999999999 899999999999999996
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.3e-38 Score=352.56 Aligned_cols=313 Identities=15% Similarity=0.200 Sum_probs=231.3
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC------CeEEEEEccccccCCCC
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN------AIHLLWKWQRTERNSSG 789 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~ 789 (1113)
.++.++.+.....|+++.... ..|...|.+++|+|||++|++++.| +.+++|+.
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~--------- 77 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD--------- 77 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS---------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC---------
Confidence 344555566778888763211 2488999999999999999999984 45555543
Q ss_pred ceeeeecCeecCCCCccccccc-cCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceee----eecCCCCCeeE
Q 001258 790 KATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATF 864 (1113)
Q Consensus 790 ~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~ 864 (1113)
.++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++
T Consensus 78 -------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 78 -------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp -------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred -------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 333221111 111237888999999999987776669999999998876543 34578999999
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccc
Q 001258 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1113)
Q Consensus 865 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1113)
++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++.......
T Consensus 145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~- 222 (357)
T 4g56_B 145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF- 222 (357)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-
Confidence 99999 899999999999999999999999999999999999999999875 789999999999999988654322111
Q ss_pred cCCCCCCCCCCCceEEEccCC-cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEE
Q 001258 944 IPTGRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVC 1020 (1113)
Q Consensus 944 ~~~~~~~~~~~i~~~~~spdg-~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~ 1020 (1113)
..+ ...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.|++|+
T Consensus 223 --~~~---~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 223 --CAS---DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp --TTC---CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred --ccc---cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 111 1367899999985 56777 488999999999999888776 789999999999997 5799999999999
Q ss_pred EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|||+.+++.+..+ +|.+.|+. ++|+|.|+.+|++++.||+|++|++++..
T Consensus 296 iwd~~~~~~~~~~--------~H~~~V~~--vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 296 VLDADFSEVFRDL--------SHRDFVTG--VAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EECTTSCEEEEEC--------CCSSCEEE--EEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEECCCCcEeEEC--------CCCCCEEE--EEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999999887543 78888885 89999889999999999999999997644
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-37 Score=339.28 Aligned_cols=251 Identities=22% Similarity=0.370 Sum_probs=217.1
Q ss_pred Eec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 353 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 353 ~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence 444 49999999999999995 9999999999999999988765 36789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCc
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA 510 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~ 510 (1113)
+++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999998765 7889999999999999999 7999999999999999987 45567899999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
.|.+++|+|. ++.+|++|+.|+.|++||+.+......+.. +...+..+.+++. +++.+|
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l 201 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYM 201 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEE
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEE
Confidence 9999998763 346999999999999999987665544432 3344444444432 245689
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++++.|+.|++||+.+++++..+..| ...|.+++|+|++++|++|+.||+|++||..++
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999999876 457999999999999999999999999999877
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=345.56 Aligned_cols=208 Identities=16% Similarity=0.233 Sum_probs=173.0
Q ss_pred cccCCCc-ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 415 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 415 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.+.+|.+ .|++++|||||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4678887 999999999999999999999999999998865433333468999999999999999 8999999999999
Q ss_pred EeCCCC--ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeE
Q 001258 494 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 494 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
||+.++ +++..+.+|...|.+++|++ ++.+|++|+.|+.|++||+...... ..+..|...|.+++|+|
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p----- 160 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP----- 160 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-----
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-----
Confidence 998876 45778999999999999876 4579999999999999999875432 23444555555555555
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE--EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 646 (1113)
++.+|++++.|+.|++||..+++.. ..+.. +...|.+++|+|++++|++++.|++|++|+
T Consensus 161 ----------------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 161 ----------------SQELLASASYDDTVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp ----------------SSSCEEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----------------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 4457999999999999999887644 44544 456899999999999999999999999998
Q ss_pred cCC
Q 001258 647 TSD 649 (1113)
Q Consensus 647 ~~~ 649 (1113)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.8e-38 Score=354.40 Aligned_cols=299 Identities=18% Similarity=0.296 Sum_probs=249.0
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|+|+|+
T Consensus 62 l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp ECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEECTTSS
T ss_pred ccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEECCCCC
Confidence 3459999999999999995 9999999999999999988765 3678999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe----
Q 001258 434 LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---- 505 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---- 505 (1113)
+||+|+.|+.|+|||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++++..+
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 999999999999999975421 1122357899999999999998654 6999999999999999999998887
Q ss_pred -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.+|...|.+++|++ .++.++++|+.||.|++||++. ......+..|...|.+++|+|++.
T Consensus 201 ~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~----------------- 262 (380)
T 3iz6_a 201 PSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ----------------- 262 (380)
T ss_dssp SSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-----------------
T ss_pred CCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-----------------
Confidence 67999999999865 3557999999999999999984 355556677777777777666665
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-----CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
+|++++.|++|++||+.+++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+.
T Consensus 263 ----~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~ 337 (380)
T 3iz6_a 263 ----RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLG 337 (380)
T ss_dssp ----EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEEC
T ss_pred ----eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEe
Confidence 799999999999999999999888765422 234889999999999999999999999998766 2222110
Q ss_pred cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 738 (1113)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 738 (1113)
.
T Consensus 338 ~------------------------------------------------------------------------------- 338 (380)
T 3iz6_a 338 T------------------------------------------------------------------------------- 338 (380)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
...+|...|.+++|+|+|+.|++++.|+.|++|++..
T Consensus 339 -------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 339 -------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 0023778899999999999999999999999999763
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-38 Score=352.18 Aligned_cols=322 Identities=14% Similarity=0.174 Sum_probs=232.0
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 440 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 440 (1113)
..+.+.+++. ++.++.+.....|++... ....|...|++++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEcCC
Confidence 3455566664 344455677788886532 23579999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee----EeeccCc
Q 001258 441 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 510 (1113)
Q Consensus 441 -----d~~i~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~ 510 (1113)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.|++|+|||+.+++... ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 78899999887654321 123457999999999999986 6678889999999999887543 3457999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|.+++|++ ++.+|++|+.||.|++||+.+......+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 999999865 558999999999999999999888888888888888888888764 2488
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC-CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1113)
+++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~----------- 266 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA----------- 266 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence 999999999999999988877766655667899999997 578999999999999998765 2111110
Q ss_pred CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1113)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1113)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
.|...|.+++|+|+
T Consensus 267 ------------------------------------------------------------------~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 267 ------------------------------------------------------------------VHSQNITGLAYSYH 280 (357)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence 15566778888887
Q ss_pred C-CEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 830 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 830 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
+ ++|++++ |++|+|||+.+++.++.+ +|...|++++|+|.++++|++|+.||.|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 4678887 899999999988777655 699999999999877899999999999999999764
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-37 Score=354.23 Aligned_cols=299 Identities=13% Similarity=0.222 Sum_probs=244.6
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999988665 7889999999999999999 79999999999999
Q ss_pred eCCCCc-------eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-----eCCCCceEEEEEc
Q 001258 495 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS 562 (1113)
Q Consensus 495 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s 562 (1113)
|+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+ ..|...+.+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 987532 3457889999999999876543 57999999999999999987766554 2344444444443
Q ss_pred cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
+ ++++++++|+.|+.|++||++ .++.+..+..| ...|.+++|+|++++|++++.||+
T Consensus 215 ~--------------------~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 215 S--------------------LNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp S--------------------SSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSC
T ss_pred c--------------------CCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCe
Confidence 3 145579999999999999997 45677777766 457999999999999999999999
Q ss_pred EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1113)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1113)
|++||+.++ ..+..+..+..
T Consensus 273 i~lwd~~~~-~~~~~~~~~~~----------------------------------------------------------- 292 (380)
T 3iz6_a 273 CRLFDMRTG-HQLQVYNREPD----------------------------------------------------------- 292 (380)
T ss_dssp EEEEETTTT-EEEEEECCCCS-----------------------------------------------------------
T ss_pred EEEEECCCC-cEEEEeccccc-----------------------------------------------------------
Confidence 999999876 22221110000
Q ss_pred CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
.
T Consensus 293 -----------------------------------------~-------------------------------------- 293 (380)
T 3iz6_a 293 -----------------------------------------R-------------------------------------- 293 (380)
T ss_dssp -----------------------------------------S--------------------------------------
T ss_pred -----------------------------------------c--------------------------------------
Confidence 0
Q ss_pred CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee----cCCCCCeeEEEEecCCCcEEE
Q 001258 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNIIA 876 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----~~~~~~i~~l~~s~~d~~~la 876 (1113)
...+...|.+++|+|+|++|++|+ ||.|++||+.+++....+ .+|...|.+++|+| ++++|+
T Consensus 294 ------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 360 (380)
T 3iz6_a 294 ------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALC 360 (380)
T ss_dssp ------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEE
T ss_pred ------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEE
Confidence 000334578899999999999998 899999999888877766 67999999999999 899999
Q ss_pred EEecCCcEEEEEcccce
Q 001258 877 IGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 877 ~g~~dg~v~iwd~~~~~ 893 (1113)
+|+.||.|+||++...+
T Consensus 361 sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEECCSSS
T ss_pred EeeCCCCEEEEecCCCc
Confidence 99999999999987643
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-36 Score=334.21 Aligned_cols=289 Identities=19% Similarity=0.260 Sum_probs=246.9
Q ss_pred eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1113)
Q Consensus 459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1113)
.++.+|.+.|.+++|+|+++ ++++++.|++|++||+.++.++..+.+|..+|.+++|+++ +++|++|+.|+.|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEEE
Confidence 47889999999999999999 8999999999999999999999999999999999998764 4799999999999999
Q ss_pred EcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCC
Q 001258 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG 617 (1113)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 617 (1113)
|+.+++....+..|...|.+++|+|++. ++++|+.|++|++||+.++. ....+..|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-- 139 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH-- 139 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence 9999888888888888888877777765 79999999999999998874 44566655
Q ss_pred CCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccc
Q 001258 618 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1113)
Q Consensus 618 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1113)
...|.+++|+| ++.+|++|+.|++|++||+.++.......
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--------------------------------------- 180 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--------------------------------------- 180 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE---------------------------------------
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec---------------------------------------
Confidence 45799999999 68999999999999999986541100000
Q ss_pred cccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE
Q 001258 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1113)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 776 (1113)
T Consensus 181 -------------------------------------------------------------------------------- 180 (304)
T 2ynn_A 181 -------------------------------------------------------------------------------- 180 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec--CCCEEEEEe-CCeEEEEECCCCceee
Q 001258 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 853 (1113)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~ 853 (1113)
.++...+..++++| ++++|++++ |++|++||+.+++++.
T Consensus 181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 00334455566654 677899998 8999999999999999
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001258 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 931 (1113)
Q Consensus 854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~L~s~s~D~~v~iwd~ 931 (1113)
.+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++. ++++++.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 889999999999999999999999999999999999999999875 577777666 888887
Q ss_pred CC
Q 001258 932 DG 933 (1113)
Q Consensus 932 ~~ 933 (1113)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-37 Score=355.35 Aligned_cols=360 Identities=11% Similarity=0.147 Sum_probs=272.5
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEec----CCcce------eEeeeeeeeccCCCCcccccccccCCC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPG 420 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~ 420 (1113)
......|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ....... ........+|.
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 108 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTT 108 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------C
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCC
Confidence 34445578999999999999933999999999999999 88773 2210000 00001123478
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 500 (1113)
+.|++++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence 8999999999999999999999999999 4555444 6789999999999999999 79999999999999999999
Q ss_pred eeeEeeccCcC---------------EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258 501 KQYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1113)
Q Consensus 501 ~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 565 (1113)
.+..+..+... +.+++|++. ..+++++.||.|++||+.+......+..+...+.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99999888776 888888764 369999999999999999887777777777777777766666
Q ss_pred CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
+ +|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ ++++++.|+.|++|
T Consensus 260 ~---------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 260 K---------------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp T---------------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred C---------------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 5 7999999999999999999988888765 4479999999999 99999999999999
Q ss_pred EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 725 (1113)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 725 (1113)
|+.++ +.+..+.
T Consensus 316 d~~~~-~~~~~~~------------------------------------------------------------------- 327 (425)
T 1r5m_A 316 SLKQN-TLLALSI------------------------------------------------------------------- 327 (425)
T ss_dssp ETTTT-EEEEEEE-------------------------------------------------------------------
T ss_pred ECCCC-cEeEecc-------------------------------------------------------------------
Confidence 98776 2222211
Q ss_pred eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258 726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805 (1113)
Q Consensus 726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g 805 (1113)
.|...|.+++|+|+++.+++++.||.|++|++.....
T Consensus 328 -----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-------------------- 364 (425)
T 1r5m_A 328 -----------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS-------------------- 364 (425)
T ss_dssp -----------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------------
T ss_pred -----------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc--------------------
Confidence 1456788889999999888888899999888753110
Q ss_pred cccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEecCCc
Q 001258 806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSS 883 (1113)
Q Consensus 806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg~ 883 (1113)
.. ..+ ....++. +.......+..+..|.. .|++++|+| ++++|++++.||.
T Consensus 365 --~~------------~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 365 --KS------------RSL---------YGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQE 417 (425)
T ss_dssp ----------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSC
T ss_pred --ce------------eee---------ecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCce
Confidence 00 000 0111222 22333456778888866 999999999 8999999999999
Q ss_pred EEEEEcc
Q 001258 884 IQIYNVR 890 (1113)
Q Consensus 884 v~iwd~~ 890 (1113)
|++||+.
T Consensus 418 i~iw~~~ 424 (425)
T 1r5m_A 418 GSVVAIP 424 (425)
T ss_dssp CEEEECC
T ss_pred EEEEeec
Confidence 9999975
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-36 Score=335.30 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.9
Q ss_pred cccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCCce--eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 491 (1113)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 588999999999999965 8999999999999999975332 123457889999999999999999 79999999999
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
++||+.+++++..+.+|...|.+++|++ ++.+|++|+.|+.|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 9999999999999999999999999865 457999999999999999964 55667777888888888887654
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
..+++..+++++.|+.|++||+.+++....+..| ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 1234557999999999999999999888888766 457999999999999999999999999998765
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=366.56 Aligned_cols=332 Identities=13% Similarity=0.188 Sum_probs=269.4
Q ss_pred cceEEEEEcCCCC-eEEEE----------eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258 421 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1113)
Q Consensus 421 ~~V~~l~~spdg~-~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~ 489 (1113)
..|.+++|||+|+ +|++| +.|+.|+|||+.+++.......+ .|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence 3788999999997 99999 88999999999987643222233 6899999999999999 799999999
Q ss_pred cEEEEeCCC----CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC------Ceee---eeCCCCce
Q 001258 490 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVD---YEAPGRWC 556 (1113)
Q Consensus 490 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~v 556 (1113)
.|++||+.+ .+.+..+.+|...|.+++|++.. +.+|++++.||.|++||+.+.. .... ...+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 45788899999999999987652 4699999999999999998865 2222 23344455
Q ss_pred EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC----CCCcCeEEECCCC-C
Q 001258 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 631 (1113)
Q Consensus 557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~ 631 (1113)
.+++|+|++ +.++++++.|+.|++||+.+++.+..+..+.. ...|.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555555542 35799999999999999999999888876531 4579999999997 6
Q ss_pred EEEEEECCC---cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258 632 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1113)
Q Consensus 632 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1113)
++++++.|+ .|++||+.++......+
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------- 257 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------- 257 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence 999999998 99999987652111100
Q ss_pred cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1113)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1113)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEE
Q 001258 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1113)
Q Consensus 789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 866 (1113)
. .+|...|.+++|+| ++++|++++ |++|++||+.+++.+..+..|...|.+++
T Consensus 258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 0 01566778888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEecCCcEEEEEcccceeeeeec-----------------------------------ccccCeEEEEE
Q 001258 867 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 910 (1113)
Q Consensus 867 ~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 910 (1113)
|+| ++ .+|++++.||.|++||+.+++...... .|..++++++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765432221 16778889999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 001258 911 SHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 911 s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=339.48 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=231.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEec
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
+...|.+++|+|||+.|++++ |+++++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777666 77788886431 112111100 0000000111567899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
++. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 965 55666 99999999998876644 348999999999999 899999999999999999999999999999999
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-CcEEEE-EcCCeEEEEeC
Q 001258 904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 980 (1113)
Q Consensus 904 ~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~-~~d~~v~v~d~ 980 (1113)
.|++++|++++ .+|++++.|++|++||+.+++....... ..+. ..+.+++|+|+ +.++++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999988 4789999999999999998664321111 1111 35789999995 557777 58999999999
Q ss_pred CccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 981 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
++++++..+. +|...|++++|+||+ ++|++|+.|++|+|||+.++++. ++. +|.+.|.. ++|+|++.
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~-------~H~~~V~~--v~~sp~~~ 312 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ-------AHRDFVRD--ATWSPLNH 312 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC-------CCSSCEEE--EEECSSST
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc-------CCCCCEEE--EEEeCCCC
Confidence 9999988876 899999999999998 57999999999999999998865 334 89999885 89999666
Q ss_pred CEEEEEeCCCcEEEEeccCCC
Q 001258 1060 NEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
.+|++++.||+|++|++.+..
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 688999999999999998754
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-36 Score=338.51 Aligned_cols=289 Identities=14% Similarity=0.186 Sum_probs=248.1
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887655 6778999999999999999 79999999999999
Q ss_pred eCCCC------ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE
Q 001258 495 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 495 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
++... .....+.+|...|.+++|+++ +..|++++.|++|++||+.+++....+..|...|.+++++|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98643 345678899999999998754 4789999999999999999988888888888878777776632
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
++++|++|+.||.|++||+++++++..+..| ...|.+++|+|++++|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 2347999999999999999999999988766 4579999999999999999999999999986
Q ss_pred CCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceee
Q 001258 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1113)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1113)
++. ....+.
T Consensus 271 ~~~-~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 ADR-EVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TTE-EEEEEC----------------------------------------------------------------------
T ss_pred CCc-EEEEEc----------------------------------------------------------------------
Confidence 541 110000
Q ss_pred EeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc
Q 001258 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1113)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~ 808 (1113)
T Consensus 280 -------------------------------------------------------------------------------- 279 (354)
T 2pbi_B 280 -------------------------------------------------------------------------------- 279 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1113)
Q Consensus 809 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw 887 (1113)
...+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|+||
T Consensus 280 -----~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 280 -----KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred -----CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 000233467888999999999998 89999999999999999999999999999999 89999999999999999
Q ss_pred E
Q 001258 888 N 888 (1113)
Q Consensus 888 d 888 (1113)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=341.15 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=201.9
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCC-cccccccccCCCcceEEEEEcCCCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS-MPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
|...|.+++|||||+ +|++++ |+++++||.... +|+..... ..........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 667799999999999 477776 788999974211 11110000 000111233466789999999985 68
Q ss_pred EEEeCCCeEEEEEccCCceeeee-eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++|+|+|+|+ +|++|+.|++|++||+.+++++..+.+|.+.|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 7999999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
++|++... .++++++.|++|++||+++.+....+. .+...+.+++|+|++. +++++|
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------------~~l~sg 233 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS--------------------EVFVFG 233 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT--------------------TEEEEE
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC--------------------cceEEe
Confidence 99876543 488999999999999999887766543 2333455566555432 468889
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEECCCcEEEEEcCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.||.|++||+++++++..+..| ...|.+++|+|++ ++|++|+.|++|++||+.++
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred ccCCcEEEEECCCCcEEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999999876 4579999999997 58999999999999998766
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-36 Score=351.91 Aligned_cols=355 Identities=14% Similarity=0.143 Sum_probs=287.6
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 44568999999996 8999999999999998876542 24445 455666889999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeee
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1113)
+.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887654 5679999999999999999 79999999999999999999999999999999999987
Q ss_pred ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
+ ++.+|++++.||.|++||+++.+....+.. +...+.++++.+.+...........+..++|+|+++++++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 6 457999999999999999998887777764 56689999999887766666667788899999999999999999
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1113)
|.|++||+.+++.+..+.. .+...|.+++|+|++. +|++++.||.|++||+.++...+..+..+
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------------- 333 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-------------- 333 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--------------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--------------
Confidence 9999999999988877753 2345799999999998 99999999999999998763323222211
Q ss_pred cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1113)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1113)
+...|
T Consensus 334 ---------------------------------------------------------------------------~~~~v 338 (420)
T 3vl1_A 334 ---------------------------------------------------------------------------EGTPI 338 (420)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 34566
Q ss_pred EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC---
Q 001258 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS--- 831 (1113)
Q Consensus 755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~--- 831 (1113)
.++.+ ++++.+++++.|+.+++|++........ +........ +. .+...|.+++|+|+++
T Consensus 339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~----~~--~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERP----------AIEFETPTF----LV--SNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC----------EECTTSCEE----EC--CSSCCCCEEEEECCSSSSC
T ss_pred eEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc----------ceeccCccE----Ec--cCCcceEEEEEccCCCCcc
Confidence 77744 5778899999999999999875321100 000111111 11 2788999999999999
Q ss_pred -EEEEEeCCeEEEEECCC
Q 001258 832 -YVMSASGGKISLFNMMT 848 (1113)
Q Consensus 832 -~l~~~sdg~i~vwd~~~ 848 (1113)
++++|++|.+.+|+++.
T Consensus 402 ~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEESCC
T ss_pred eEEEEcCCceEEEEeccC
Confidence 66666699999999864
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.8e-36 Score=334.89 Aligned_cols=216 Identities=20% Similarity=0.308 Sum_probs=181.0
Q ss_pred cccCCCcceEEEEE-----cC-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEE
Q 001258 415 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 484 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s 484 (1113)
.+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 999999999999999999976532 123446889999999999999999 7999
Q ss_pred ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee---CCCCceEEEEE
Q 001258 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY 561 (1113)
Q Consensus 485 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~ 561 (1113)
|+.|++|++||+.+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999875 457999999999999999973 3232222 56677888888
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
+|++... ..+.|.+.++++++.|+.|++||. .++....+..| ...|.+++|+|++++|++|+.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence 8876421 123456678999999999999994 55666666655 457999999999999999999999
Q ss_pred EEEEEcCC
Q 001258 642 IKILATSD 649 (1113)
Q Consensus 642 i~iwd~~~ 649 (1113)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=325.61 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=213.6
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|++++|+|+|++ |++|+.||.|+||++.+++... .+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence 33459999999999999995 9999999999999999887665 367899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+++++++..+..|...|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999988665 6889999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
.+++|++ ++.++++++.||.|++||+++......+.. +.. .+..++|+|+++++++
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEE
Confidence 9999865 557999999999999999988665544322 222 3444555556668999
Q ss_pred EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCC
Q 001258 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 999999999999999999988776543333334444 67899999999999999999876
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=360.32 Aligned_cols=367 Identities=14% Similarity=0.188 Sum_probs=269.6
Q ss_pred cCCCCcEEEEEcCCCCeEEEEE----------ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~g----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 425 (1113)
.+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3456789999999998679999 8899999999998763210 013468889999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeeeeecccCCeeEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCc---
Q 001258 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--- 500 (1113)
Q Consensus 426 l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~--- 500 (1113)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1123368899999999999998 66 79999999999999999887
Q ss_pred ---eee---EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC------CCceEEEEEccCCCeE
Q 001258 501 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT 568 (1113)
Q Consensus 501 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~ 568 (1113)
... .+.+|...|.+++|++.. +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-- 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence 333 346799999999987652 369999999999999999987766666554 44555555555542
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCC-ceEEEEc-cCCCCCCcCeEEECC-CCCEEEEEECCCcE
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI 642 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 642 (1113)
.++++++.|+ .|++||++++ ..+..+. .| ...|.+++|+| ++++|++++.||.|
T Consensus 228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 3688899998 9999999986 5555554 44 45799999999 99999999999999
Q ss_pred EEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccC
Q 001258 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1113)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1113)
++||+.++ +.+..+.
T Consensus 288 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 302 (416)
T 2pm9_A 288 LLWNPESA-EQLSQFP---------------------------------------------------------------- 302 (416)
T ss_dssp EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence 99998876 3333221
Q ss_pred CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCC-ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
.|...|.+++|+|++ ..+++++.|+.|++|++.....
T Consensus 303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~---------------- 340 (416)
T 2pm9_A 303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN---------------- 340 (416)
T ss_dssp --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC----------------
T ss_pred --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC----------------
Confidence 155678899999999 8899999999999998763111
Q ss_pred CCCccccccccCCCCCCC-----CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE
Q 001258 802 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 876 (1113)
... ... ......+.+.+..++.+. .+..+ .. .....+...+.+++|+| +|++||
T Consensus 341 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~-~~~~~~~~~~~~~~~s~-dg~~la 399 (416)
T 2pm9_A 341 ----------TLD--EQETETKQQESETDFWNNVSREESKE--KPSVF-----HL-QAPTWYGEPSPAAHWAF-GGKLVQ 399 (416)
T ss_dssp ----------SSC--C----------------------CCS--CCCSS-----CC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred ----------Ccc--cccccccccCCccccccccccccccc--ccccc-----cc-cCCccccCCccceEEee-CCeEEE
Confidence 000 100 000111111221121111 01101 11 22234667788999999 999999
Q ss_pred EEecCCcEEEEEcccc
Q 001258 877 IGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 877 ~g~~dg~v~iwd~~~~ 892 (1113)
+|+.||.|+||++.+.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999998764
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.7e-36 Score=333.85 Aligned_cols=324 Identities=15% Similarity=0.176 Sum_probs=263.8
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
|.+.|.+++|+|||+. ++++..++.+.+|+........ ...+|.+.|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 6678999999999995 7777777777676654433322 2347999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeee--cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccCcCE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 512 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v 512 (1113)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554444444 7999999999999999 79999999999999999887 567788899999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|++. +++++
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~ 201 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT---------------------KLWTG 201 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC---------------------EEEEE
Confidence 9999875 457999999999999999998777777766766677666666654 79999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
+.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.|++|++.++. ... +
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~-~--------------- 261 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ-L--------------- 261 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-E---------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-E---------------
Confidence 99999999999999888877533 468999999999999999999999999976541 000 0
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
T Consensus 262 -------------------------------------------------------------------------------- 261 (337)
T 1gxr_A 262 -------------------------------------------------------------------------------- 261 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
..|...|.+++|+|++++
T Consensus 262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence 015556777778888888
Q ss_pred EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
|++++ ||.|++||+.+++.+.... |...+.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88777 7888888888777664443 778899999999 89999999999999999963
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=334.98 Aligned_cols=300 Identities=16% Similarity=0.211 Sum_probs=239.7
Q ss_pred ccC-ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 750 RAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 750 ~~~-~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
|.. .|..++|+|+|+.|++++.|+.|++|++..... ........+|...|.+++|+|
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~sp 71 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWSP 71 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEECT
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEECC
Confidence 666 899999999999999999999999999763211 000000123899999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---eeeeeecccc
Q 001258 829 NDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHS 902 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~ 902 (1113)
++++|++++ |++|++|++..+ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|.
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence 999999999 999999998866 45788999999999999999 8999999999999999999865 4567788999
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 981 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~ 981 (1113)
..|++++|+|++++|++++.|++|++||+.+++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++|+..
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 9999999999999999999999999999877532 1223344554 37999999999999999 589999999963
Q ss_pred cc---------------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeee--cCCCcccCCCcc
Q 001258 982 KL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGVS 1044 (1113)
Q Consensus 982 ~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~--~~~~~~~~~gh~ 1044 (1113)
.. +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+..... +........+|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 225 LPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp CTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred cCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 32 2222222 24788999999999999999999999999999876532110 000011223788
Q ss_pred cCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258 1045 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus 1045 ~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
..|.. ++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 304 ~~V~~--v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 304 QDVNC--VAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SCEEE--EEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CcEeE--eEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 88884 999996557999999999999999998773
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.4e-35 Score=323.43 Aligned_cols=291 Identities=21% Similarity=0.369 Sum_probs=245.8
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999987665 6789999999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|+.+++++..+.+|...|.+++|++ ++.+|++|+.||.|++||+++......+..+...+.+++|+|++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 162 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-------- 162 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC--------
Confidence 9999999999999999999999876 457999999999999999998887777777777777777666665
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
++++++.||.|++||+.+++.+..+.... ...+.+++|+|++++|++++.|+.|++||+.++ +.+
T Consensus 163 -------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~ 227 (312)
T 4ery_A 163 -------------LIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL 227 (312)
T ss_dssp -------------EEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred -------------EEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence 79999999999999999998887775432 346889999999999999999999999998776 332
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+.+|..
T Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (312)
T 4ery_A 228 KTYTGHKN------------------------------------------------------------------------ 235 (312)
T ss_dssp EEECSSCC------------------------------------------------------------------------
T ss_pred EEEEecCC------------------------------------------------------------------------
Confidence 22211110
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
T Consensus 236 -------------------------------------------------------------------------------- 235 (312)
T 4ery_A 236 -------------------------------------------------------------------------------- 235 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCCcEEEEEcc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~ 890 (1113)
....+......+++++|++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++ .|+.|++|+..
T Consensus 236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 000111222235677888888 89999999999999999999999999999999 889999987 69999999864
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-35 Score=335.21 Aligned_cols=303 Identities=18% Similarity=0.301 Sum_probs=232.3
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc------------------CCeeEEEEcCCCCe
Q 001258 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 479 (1113)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~~~~~ 479 (1113)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+. .+..|. ..|.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6889999999988665 344332 2499999999999
Q ss_pred eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~---------------- 197 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTG---------------- 197 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTT----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCC----------------
Confidence 799999999999999999999999999999999998765 4467888888888877777642
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 638 (1113)
+....+..+ ..+.+++|+| ++++|++++.
T Consensus 198 -----------------------------------------------~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 198 -----------------------------------------------QCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp -----------------------------------------------EEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred -----------------------------------------------eeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 222222211 2477899999 8999999999
Q ss_pred CCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCccee
Q 001258 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1113)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1113)
|+.|++||+.++ ..+..+.....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~~-------------------------------------------------------- 250 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSENE-------------------------------------------------------- 250 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence 999999998876 33222210000
Q ss_pred eccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCe
Q 001258 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1113)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1113)
...+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 0012667778888888888888888888888777642100
Q ss_pred ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE
Q 001258 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1113)
Q Consensus 799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 878 (1113)
..... ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus 291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 00000 0012344556778999999999999 89999999
Q ss_pred ecCCcEEEEEcccceeeeeecccccCeEEEEEcC------CCCEEEEEeCCCcEEEEeCCC
Q 001258 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++|+.|++|++|++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-35 Score=335.93 Aligned_cols=275 Identities=14% Similarity=0.222 Sum_probs=206.4
Q ss_pred ceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
++...++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+....-..... .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 34566789999999999999995 88876 7899999999998765321100000 000000011122344569999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987665 6889999999999999999 79999999999999999999888776 66
Q ss_pred cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
..+.+++|++ .++.+|++|+.||.|++||++++.....+..... .. ..+...+..++|+|++.+|
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-------------~~-~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------SG-TGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc-------------CC-CCCCCCEEEEEECCCCCEE
Confidence 7899999875 2568999999999999999988665544421000 00 0112244555555666689
Q ss_pred EEEecCCcEEEEECCCC------------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 590 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++++.|+.|++||+.+. .+...+..| ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999763 234445444 457999999999999999999999999999877
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-37 Score=356.54 Aligned_cols=355 Identities=11% Similarity=0.072 Sum_probs=235.2
Q ss_pred CcceeEeccCCCCcEEEEEcCCC---------CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg---------~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1113)
..+...++.+.+.|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 44555677789999999999997 5 58888755310
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCC------CCeeEEEEecCCCcE
Q 001258 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 491 (1113)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~------~~~~~l~s~s~d~~i 491 (1113)
-..+|+++.||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12346678899999999997 45 79999999999
Q ss_pred EEEeCCCCce-----------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEE
Q 001258 492 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 559 (1113)
Q Consensus 492 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 559 (1113)
+|||+.++.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 3478899999999999753 3799999999999999987543 33566777777776
Q ss_pred --EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE
Q 001258 560 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637 (1113)
Q Consensus 560 --~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 637 (1113)
++++++. .+|++++.|++|++||++++++...+..+.....|.+++|+|+++.+++++
T Consensus 315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 3455441 368999999999999999888776665543323578999999999999999
Q ss_pred CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcce
Q 001258 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1113)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1113)
.|++|++||+.++. ....+.
T Consensus 375 ~d~tv~lwd~~~~~-~~~~l~----------------------------------------------------------- 394 (524)
T 2j04_B 375 GASSLRAVPSRAAF-AVHPLV----------------------------------------------------------- 394 (524)
T ss_dssp SSSEEEEEETTCTT-CCEEEE-----------------------------------------------------------
T ss_pred CCCcEEEEECcccc-cceeee-----------------------------------------------------------
Confidence 99999999987651 111110
Q ss_pred eeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1113)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1113)
+
T Consensus 395 -------------------------------g------------------------------------------------ 395 (524)
T 2j04_B 395 -------------------------------S------------------------------------------------ 395 (524)
T ss_dssp -------------------------------E------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 1
Q ss_pred eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC-----CCCCeeEEEEecCC
Q 001258 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD 871 (1113)
Q Consensus 798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d 871 (1113)
|...|.+++|+|+|++|++|+ |++|++||+... .+..+.. +...+.+++|+| +
T Consensus 396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~ 454 (524)
T 2j04_B 396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K 454 (524)
T ss_dssp -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence 444455555555555555555 555555554332 1111110 112356788999 6
Q ss_pred CcEEEEEecCCcEEEEEcc-cceeeeeecccccCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001258 872 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~L~s~s~D~~v~iwd~~~ 933 (1113)
+..+. ... .+.+|+.. ++.++..+.+|...|++|+|+|++. +||+|+.||+|+||++..
T Consensus 455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 66442 222 23344332 4677888999999999999999964 999999999999999876
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-35 Score=330.36 Aligned_cols=320 Identities=13% Similarity=0.168 Sum_probs=258.1
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
|.+.|.+++|||||++++++..++.+.+|......... ...+|...|.+++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 45689999999999999998877777776554432222 3458999999999999999 788888 99999999988
Q ss_pred Ccee---eEee--ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEec
Q 001258 499 GAKQ---YIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 499 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
+... ..+. +|...|.+++|++ ++.+|++++.||.|++||+.+... ...+..+...+.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~------ 153 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS------ 153 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS------
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC------
Confidence 7643 3343 7999999999875 557999999999999999988663 33444555555555555554
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
+++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus 154 ---------------~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 154 ---------------KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ---------------CEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 47999999999999999999998888765 4479999999999999999999999999986651
Q ss_pred cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1113)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1113)
....+
T Consensus 217 -~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 217 -QLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp -EEEEE--------------------------------------------------------------------------
T ss_pred -eEeee--------------------------------------------------------------------------
Confidence 11000
Q ss_pred cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1113)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 811 (1113)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 812 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0334466777778888888777 78888888877654 45677889999999999 89999999999999999999
Q ss_pred cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
+++.+.. ..|...|++++|+|++++|++++.|+.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887744 458899999999999999999999999999996
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-34 Score=322.70 Aligned_cols=252 Identities=19% Similarity=0.297 Sum_probs=200.2
Q ss_pred eccCCCCcEEEEE-----cC-CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 354 TLNQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 354 ~~~h~~~V~~~~~-----sp-dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
+.+|.+.|++++| ++ +++ +|++|+.|++|+|||+.+++.... .......+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence 3459999999999 77 888 599999999999999976542110 0001125789999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-
Q 001258 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE- 506 (1113)
Q Consensus 428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~- 506 (1113)
|+|++.+|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+. +.......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~~~~~ 157 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKFSSAE 157 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEEECCT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCceeeeec
Confidence 99999999999999999999999988665 6889999999999999999 79999999999999987 44444433
Q ss_pred --ccCcCEEEEeeeecCC--------ceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258 507 --GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1113)
Q Consensus 507 --~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 576 (1113)
+|...|.+++|++... +.++++++.||.|++||.. ......+..|...|.+++|+|+|+
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~---------- 226 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGK---------- 226 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSS----------
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCC----------
Confidence 7899999999876532 2689999999999999943 344445556666666666666554
Q ss_pred eeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+|++++.|+.|++||+. .......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 227 -----------~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 227 -----------YIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp -----------EEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred -----------EEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 79999999999999994 4444444432 2 358999999999888755 5788999998776
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-35 Score=341.18 Aligned_cols=346 Identities=12% Similarity=0.099 Sum_probs=260.2
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 500 (1113)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999876544 44455 4455668899999 79999999999999999999
Q ss_pred eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
....+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|+++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 194 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------------- 194 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence 9888899999999999876 457999999999999999999888888888887777777777665
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC-CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
+|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++... ++..... .
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~--~------ 249 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS--K------ 249 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC--C------
T ss_pred -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC--c------
Confidence 69999999999999999999998887542 23345555554432211 0000011 0
Q ss_pred ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1113)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1113)
T Consensus 250 -------------------------------------------------------------------------------- 249 (420)
T 3vl1_A 250 -------------------------------------------------------------------------------- 249 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1113)
Q Consensus 740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 819 (1113)
+.+++|+|+++.+++++.||.|++||+... ........ .|..
T Consensus 250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFSK----------------------EQTIQLPS--KFTC 291 (420)
T ss_dssp --------------CCTTCSSCTTEEEEEEETTSCEEEEETTTC----------------------CEEEEECC--TTSS
T ss_pred --------------ccceEEcCCCCEEEEEcCCCeEEEEECCCC----------------------ceeEEccc--ccCC
Confidence 011223444455555555555555544321 11110011 2677
Q ss_pred CccEEEEecCCC-EEEEEe-CCeEEEEECCCCce-eeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---
Q 001258 820 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 892 (1113)
Q Consensus 820 ~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--- 892 (1113)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+ + ++++|++++.||.|++|++...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 889999999998 888888 89999999988754 666666 5666777755 5 6789999999999999998763
Q ss_pred ------eeeeeecccccCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001258 893 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 893 ------~~~~~l~~h~~~V~~l~~s~d~~---~L~s~s~D~~v~iwd~~~ 933 (1113)
.....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22334667999999999999999 788888899999999865
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=324.19 Aligned_cols=252 Identities=17% Similarity=0.244 Sum_probs=196.5
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccc-c-CCCcceEEEEEcCC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSPD 431 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~spd 431 (1113)
+.+|.+.|++++|+|+ +||+|+.|++|+|||+.++...... .+ . +|.+.|.+++|+|+
T Consensus 10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECTT
T ss_pred eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECCC
Confidence 3459999999999998 5999999999999999875321100 12 3 49999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCc----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC----Cceee
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQY 503 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~ 503 (1113)
+++||+|+.|++|+|||+.... .......+.+|.+.|.+++|+|+++ +|++|+.|++|++||+.. .+++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999986432 1223446889999999999999999 899999999999999943 25677
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC--CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.+.+|...|.+++|+++ +.+|++++.|++|++||..+. .....+..|...|.+++|+|++.
T Consensus 148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------- 210 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--------------- 210 (330)
T ss_dssp EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence 88999999999998764 579999999999999998765 34556667777777777777631
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCC--------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.+|++++.|++|++||+..+ .+...+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 236899999999999998654 23333332 145679999999765 8999999999999997654
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-34 Score=337.95 Aligned_cols=342 Identities=17% Similarity=0.295 Sum_probs=265.1
Q ss_pred cccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 415 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477888875 66666 67899999999999999999998665 688999999999999987 5999999999999
Q ss_pred EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-eEEecc
Q 001258 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 572 (1113)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~ 572 (1113)
||+.+++++..+.+|...|.+++|++.+++.++++++.||.|++||+.+............ ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999999888889999999999999999987665433222111 11222223222 111112
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
......+.+++++++++++++.|+.|++||+.+++.+..+..+ ...|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 2223344556788899999999999999999999999988766 457999999999999999999999999998766 2
Q ss_pred ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1113)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 221111
Q ss_pred CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1113)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 812 (1113)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
+|...|.+++++ +++|++++ ||+|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 145556666665 46777776 7888888887766655553 566788899999 899999998 89999999999
Q ss_pred ceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 892 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 892 ~~~~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
++.+.. +.+|.+.|++++|+ ++.++++++.|+.+.+|-+
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 998875 67899999999997 4455556667776665543
No 50
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-34 Score=322.43 Aligned_cols=307 Identities=18% Similarity=0.263 Sum_probs=249.8
Q ss_pred eeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1113)
Q Consensus 351 ~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1113)
+..+| +|.+.|++|+|+|++..+|+||+.||+|+|||+.+++..... ....+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEEC
Confidence 34445 499999999999985446999999999999999876543211 112578999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee-eEeecc
Q 001258 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 508 (1113)
Q Consensus 430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h 508 (1113)
|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999887554 5667888999999999999 7999999999999998766544 345679
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 588 (1113)
...+..++|++.....++++++.|+.|++||+++......+..+...|.+++|+|+++ +
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------------------~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------------------L 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------E
Confidence 9999999998887778899999999999999998887777777777777777777665 7
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccC
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1113)
|++++.|+.|++||+.+.+.+..+..+ ..+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+...
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~----- 299 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS----- 299 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee-----
Confidence 999999999999999999998888755 3589999999887654 556899999998876 333333211100
Q ss_pred CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1113)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1113)
....
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (340)
T 4aow_A 300 ----------------------------------------------------------------------------TSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eecc
Confidence 0002
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEcccc
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1113)
.|...|.+++|+|+|++|++++.||.|+||++.++
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998754
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=342.58 Aligned_cols=373 Identities=11% Similarity=0.145 Sum_probs=269.0
Q ss_pred EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCe
Q 001258 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI 443 (1113)
Q Consensus 365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~ 443 (1113)
.|+|+++. +++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 47888885 66544 4773 4555442 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCceeeEeec----------
Q 001258 444 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG---------- 507 (1113)
Q Consensus 444 i~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~~---------- 507 (1113)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++++.|++|++||+. +++.+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 99999987 5433222233 5999999999999999 79999999999999995 6666554443
Q ss_pred --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--CCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. +...|.+++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------------ 226 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC------------------ 226 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS------------------
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC------------------
Confidence 34556666655667789999999999999999998877776665 45566666665555
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC----CCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
++|++++.||.|++||+++++++..+.... ...|.+++|+ +++.+|++++.||.|++||+.++ +....+.+
T Consensus 227 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 301 (437)
T 3gre_A 227 ---CVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN 301 (437)
T ss_dssp ---CEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred ---CEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence 479999999999999999999988886322 3478999555 56889999999999999999888 55555544
Q ss_pred ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1113)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1113)
|...+
T Consensus 302 ~~~~~--------------------------------------------------------------------------- 306 (437)
T 3gre_A 302 SDEQP--------------------------------------------------------------------------- 306 (437)
T ss_dssp SSSCC---------------------------------------------------------------------------
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 43211
Q ss_pred ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1113)
Q Consensus 740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 819 (1113)
..+.|+|+++.+ .+. .+.+..|..
T Consensus 307 ---------------~~~~~~~~~~~l----~~~-------------------------------------~~~~~~~~~ 330 (437)
T 3gre_A 307 ---------------SMEHFLPIEKGL----EEL-------------------------------------NFCGIRSLN 330 (437)
T ss_dssp ---------------CGGGGSCBCSSG----GGC-------------------------------------CCCCCCSGG
T ss_pred ---------------ccceeccccccc----ccc-------------------------------------eecccccCC
Confidence 111222222211 000 011112778
Q ss_pred CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
.|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....+++ ...+++.. |+.......
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~ 400 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV 400 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence 89999999 888999998 99999999999999988887643 355566666 44444433 333344455
Q ss_pred eeecccccCeEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001258 896 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d--~~~L~s~s~D~~v~iwd 930 (1113)
.....|.+.|++++|+++ +.+|++|+.||+|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666789999999999988 78999999999999995
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.7e-34 Score=333.37 Aligned_cols=317 Identities=20% Similarity=0.329 Sum_probs=267.9
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 46789887533 355579999999999999999999998765 788999999999998 45 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
|+.+++++..+.+|...|.+++|+ + ..+++|+.||.|++||+.+++....+..+...+.++.+ ++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~--------- 249 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG--------- 249 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--C--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence 999999999999999999999974 2 57999999999999999998888788777777777766 33
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
+++++++.||.|++||+.+++.+..+..+ ...|.+++| ++.++++++.||.|++||+.++ +.+
T Consensus 250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 36999999999999999999999888765 447888888 7899999999999999998766 221
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|++ ++|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence 03334444444 456888887 89999999999888888876 778899999964 699999999999999999
Q ss_pred cceeeeee-----cccccCeEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001258 891 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 933 (1113)
Q Consensus 891 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~L~s~s~D~~----v~iwd~~~ 933 (1113)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988888 578899999999999999999999998 99999976
No 53
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.8e-33 Score=362.23 Aligned_cols=518 Identities=14% Similarity=0.082 Sum_probs=361.1
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+...+.+.+||| ++ |+..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 456789999996 44 555554 799999998876542 667999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCceeeeeeeeecccCCe-------eEEEEcCCCCeeEEEEecCC------CcEEEEeCC
Q 001258 437 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 497 (1113)
Q Consensus 437 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~ 497 (1113)
+++.+ ..|.+||+.+++. + .+..|...+ .+++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999998863 2 577888888 9999999998 67777654 458888876
Q ss_pred CCceee-------------------------------------------------EeeccCcCEEEEeeeecCCceEEEE
Q 001258 498 NGAKQY-------------------------------------------------IFEGHEAPVYSVCPHHKENIQFIFS 528 (1113)
Q Consensus 498 ~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s 528 (1113)
++.... .+.+|...+.++.|++ + .++++
T Consensus 143 ~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~ 219 (1045)
T 1k32_A 143 GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFI 219 (1045)
T ss_dssp GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEE
T ss_pred CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEE
Confidence 655321 1233455555555543 2 45666
Q ss_pred EecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258 529 TALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1113)
Q Consensus 529 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1113)
++.|+.+.+|.+.... ....+..+. .+. ..+|+|+|++++.+ .++.|++|++...
T Consensus 220 ~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~---------------------~~~~SpDG~~la~~-~~~~i~~~d~~~~- 275 (1045)
T 1k32_A 220 TDIDGFGQIYSTDLDGKDLRKHTSFT-DYY---------------------PRHLNTDGRRILFS-KGGSIYIFNPDTE- 275 (1045)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCCCC-SSC---------------------EEEEEESSSCEEEE-ETTEEEEECTTTC-
T ss_pred EeccCceEEEEEeCCCCcceEecCCC-Ccc---------------------eeeEcCCCCEEEEE-eCCEEEEecCCce-
Confidence 6677777777665322 222222221 122 33555555567666 5899999999544
Q ss_pred eEEEEccCC---------CCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCccc
Q 001258 608 LLTSIDADG---------GLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 677 (1113)
Q Consensus 608 ~~~~~~~~~---------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1113)
.+..+..+. +...+.+++|+ |||+.|++++ ++.+.+|+..++. ... +.
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------- 333 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------- 333 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS-------------------
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc-------------------
Confidence 343444321 12258899999 9999999888 7889999876551 111 10
Q ss_pred chhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC-ceEE
Q 001258 678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISR 756 (1113)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 756 (1113)
.+.. .+..
T Consensus 334 -----------------------------------------------------------------------~~~~~~~~~ 342 (1045)
T 1k32_A 334 -----------------------------------------------------------------------EPLRIRYVR 342 (1045)
T ss_dssp -----------------------------------------------------------------------CCSCEEEEE
T ss_pred -----------------------------------------------------------------------CCCcceEEe
Confidence 0333 6788
Q ss_pred EEEeCCCceEEEeecCCeEE-EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 757 LIFTNSGNAILALASNAIHL-LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
++|+ ||+.++.++.++.+. +|++.. +.... +. ++...+.+++|+|||++|++
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~----------------------~~~~~--l~--~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRT----------------------GKAEK--FE--ENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTT----------------------CCEEE--CC--CCCCSEEEEEECTTSSEEEE
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCC----------------------CCceE--ec--CCccceeeeEECCCCCEEEE
Confidence 8999 999999888877777 776542 22211 11 26678999999999999999
Q ss_pred Ee-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----------cEEEEEcccceeeeeecccccC
Q 001258 836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKR 904 (1113)
Q Consensus 836 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~ 904 (1113)
++ ++.|++||+.+++....+..|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...
T Consensus 396 ~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~ 473 (1045)
T 1k32_A 396 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH 473 (1045)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB
T ss_pred ECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc
Confidence 88 78999999999988887778888899999999 899898887654 99999999887 6778889889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE--EE-E-cCCeEEEEeC
Q 001258 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF--LV-V-HETQLAIFET 980 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l--~~-~-~d~~v~v~d~ 980 (1113)
+.+++|+|||++|++++.++...+|+....... ...+ ..+..+.+++++... +. . .+.....|++
T Consensus 474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 542 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS------FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 542 (1045)
T ss_dssp EEEEEECTTSCEEEEEESCCCCCEECSSSSCEE------CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred cCCceEcCCCCEEEEEecccCCcCcchhccccc------cccC-----ceeEEEEeCCCCCCccccCcCccccccccccc
Confidence 999999999999999999999999987642210 0000 123444555544432 21 1 1111224555
Q ss_pred CccceeeccccCCCCCCeeEEEECCCCCEEEE-------------EeCCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-------------~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
.... ........|...+..++++|||+++++ ...+..|++||+.+++..... ..+
T Consensus 543 ~g~~-~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----------~~v 610 (1045)
T 1k32_A 543 NDMY-KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----------NNL 610 (1045)
T ss_dssp TTGG-GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----------EEE
T ss_pred cCHh-HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----------cCc
Confidence 4321 111122256788999999999998875 123457888999888754221 223
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
. .++|+| ||++|++++.| .|++||+.+++
T Consensus 611 ~--~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 T--DLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--EEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--eEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 3 478888 89999998866 89999998876
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.6e-34 Score=319.87 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=178.7
Q ss_pred cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 491 (1113)
+|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876532 23447889999999999999999 89999999999
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEe
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
++|+...+........+...+..+.+.+ ++.+|++++.|+.+++||+....... ....+...+..++|++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 9999999998888888888888888654 45789999999999999987643332 3344566677777766553
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
...+++++.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 235788999999999999999999888766 457999999999999999999999999998765
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-33 Score=328.64 Aligned_cols=320 Identities=16% Similarity=0.283 Sum_probs=265.0
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
...+|.+.|.. +++++|+ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +
T Consensus 113 ~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--T
T ss_pred EecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--C
Confidence 44568887643 3555688 49999999999999999998776 377999999999997 6
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++++..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 799999999999999999998665 688999999999996 45 69999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.++++ ++.++++|+.||.|++||+++......+..+...+.++.+ ++ .+++++
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~~ 295 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVSG 295 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEEE
Confidence 99987 4478999999999999999988777777777777777766 33 369999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
+.|+.|++||+.+++.+..+..+. ..+.++.+ +++++++++.||.|++||+.++ +.+..+.++
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------ 358 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------ 358 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred eCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence 999999999999999999887663 35666665 5779999999999999998766 222211100
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
..|...|.+++++ +++
T Consensus 359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence 0155667777774 568
Q ss_pred EEEEe-CCeEEEEECCCCceeeee-----cCCCCCeeEEEEecCCCcEEEEEecCCc----EEEEEccc
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 891 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~----v~iwd~~~ 891 (1113)
|++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++|+|+.||. |.|||+..
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 88887 889999999988888777 46778899999999 8999999999998 99999874
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=317.67 Aligned_cols=290 Identities=13% Similarity=0.164 Sum_probs=224.5
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
+|...|.+++|+++ .|++++.|+.|++|++..... .... .+....|...|.+++|+|
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEECT
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEECC
Confidence 48899999999998 899999999999998763211 0000 011113888999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----ceeee
Q 001258 829 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS 896 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~ 896 (1113)
++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|+.|++||+.. .+++.
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 999999999 99999999853 345677899999999999999 899999999999999999943 35678
Q ss_pred eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEEEE-EcCC
Q 001258 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET 973 (1113)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l~~-~~d~ 973 (1113)
.+.+|...|++++|+|++.+|++++.|++|++||+.++.. .+.....+|. ..|.+++|+|+ +.+|++ +.|+
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTS
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCC
Confidence 8999999999999999999999999999999999876421 2344455665 37999999999 678888 5899
Q ss_pred eEEEEeCCcc--------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce--eeecCCCcccCCCc
Q 001258 974 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1043 (1113)
Q Consensus 974 ~v~v~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~--~~~~~~~~~~~~gh 1043 (1113)
.|++||+.++ .+...+. ..|...|.+++|++++ +|++++.||+|+||+..+++. .... ..+|
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~------~~~h 293 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR------ALCH 293 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE------SCTT
T ss_pred eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc------cccc
Confidence 9999999765 2333332 3489999999999665 899999999999999987742 2221 1266
Q ss_pred cc-CccceEEEEeCC-CCCEEEEEeCCCcEEEEeccC
Q 001258 1044 SS-NVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1044 ~~-~v~~i~~~~~p~-d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
.. .|.. ++|+|. ++++|++|+.||+|++|++++
T Consensus 294 ~~~~v~~--v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINV--VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEE--EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEE--EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 65 6664 788885 678999999999999999875
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-33 Score=328.95 Aligned_cols=319 Identities=15% Similarity=0.243 Sum_probs=263.8
Q ss_pred eEeccCCCCc-EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 352 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 352 ~~~~~h~~~V-~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+|.+.| .|+.| +++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcC
Confidence 3445688775 66666 556 59999999999999999998776 3779999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCce-------
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK------- 501 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~------- 501 (1113)
++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999998665 6889999999999995 556 899999999999999987653
Q ss_pred ----------------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258 502 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1113)
Q Consensus 502 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 565 (1113)
+..+.+|...|.++. + ++.++++++.||.|++||+.+.+....+..+...|.+++|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 456788999998875 3 34699999999999999999887777777777777777776666
Q ss_pred CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
. ++++++.||.|++||+.+++.+..+..| ...|.+++|+ ++++++++.||.|++|
T Consensus 323 ~---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 323 K---------------------RCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp T---------------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred C---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 5 7999999999999999999999998766 4478899997 5899999999999999
Q ss_pred EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 725 (1113)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 725 (1113)
|+.++.....
T Consensus 378 d~~~~~~~~~---------------------------------------------------------------------- 387 (464)
T 3v7d_B 378 DANDYSRKFS---------------------------------------------------------------------- 387 (464)
T ss_dssp ETTTCCEEEE----------------------------------------------------------------------
T ss_pred ECCCCceeee----------------------------------------------------------------------
Confidence 9865410000
Q ss_pred eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258 726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805 (1113)
Q Consensus 726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g 805 (1113)
.
T Consensus 388 -------------------------------------------~------------------------------------ 388 (464)
T 3v7d_B 388 -------------------------------------------Y------------------------------------ 388 (464)
T ss_dssp -------------------------------------------E------------------------------------
T ss_pred -------------------------------------------e------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcE
Q 001258 806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 884 (1113)
Q Consensus 806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v 884 (1113)
.+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+
T Consensus 389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence 034456678899999999999999999999999999876 67788899999997 45677777888876
Q ss_pred EEEE
Q 001258 885 QIYN 888 (1113)
Q Consensus 885 ~iwd 888 (1113)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=343.70 Aligned_cols=386 Identities=14% Similarity=0.194 Sum_probs=282.0
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeee-ecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCC---Cc-
Q 001258 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 500 (1113)
Q Consensus 427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~---~~- 500 (1113)
.|+|+++.+++++ .|+. +++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------cccc-cceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4788898888765 3774 344444 56 78999999999999 998 899999999999999877 44
Q ss_pred --eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC---CCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258 501 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1113)
Q Consensus 501 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 575 (1113)
....+ +|...|.+++|++ ++.+|++++.||.|++||+. ++........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23333 4999999999875 55799999999999999995 44444444333 67777777743 122
Q ss_pred ceeEEE--ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258 576 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 576 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
.+..+. +++++.++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ +.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 444555 668899999999999999999999999999987434568999999999999999999999999998765 22
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
+..+. +
T Consensus 249 ~~~~~------------------------------------------------------------------------~-- 254 (437)
T 3gre_A 249 IRSWS------------------------------------------------------------------------F-- 254 (437)
T ss_dssp EEEEB------------------------------------------------------------------------C--
T ss_pred EEEEe------------------------------------------------------------------------c--
Confidence 22110 0
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
.+...|.+++++|
T Consensus 255 ---------------~~~~~v~~~~~~~---------------------------------------------------- 267 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQ---------------------------------------------------- 267 (437)
T ss_dssp ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred ---------------CCCCceEEEEecc----------------------------------------------------
Confidence 0222333333222
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
+|++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 2335677888888 89999999999999999999999999999999 55544 111
Q ss_pred eeeeeecc--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 893 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 893 ~~~~~l~~--h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.+.+ |...|++++|+ ++++|++++.|+.|++||+.+++.. ....++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1444 99999999999 8899999999999999999986543 2223332222344556666666555443
Q ss_pred cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCC--CCEEEEEeCCCcEEEEe
Q 001258 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1023 (1113)
Q Consensus 971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~vwd 1023 (1113)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 223333333332 268999999999998 88999999999999995
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=319.38 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=253.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 588999999999999999999999999999999999988665 7889999999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC-----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
|+.+++++..+. |...|.+++|++ ++.++++++.+ |.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999888 889999999875 45799999988 99999998754322111
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
.. .....+..+..+.+...+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0112222333333334689999999999999999999999999865
Q ss_pred CccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeE
Q 001258 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1113)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1113)
+......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111100
Q ss_pred eccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccc
Q 001258 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1113)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 809 (1113)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC------
Q 001258 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 882 (1113)
Q Consensus 810 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg------ 882 (1113)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 1556678888888888888887 8899999999888888877 677899999999 899999999888
Q ss_pred --------cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1113)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~ 935 (1113)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.|++|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998743
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7e-34 Score=350.39 Aligned_cols=259 Identities=21% Similarity=0.302 Sum_probs=216.3
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
..+|.+.|++++|+|++..+|++|+.||+|+|||+.++..... .....+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 3459999999999998765799999999999999976542210 01114789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---eccCc
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 510 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~~ 510 (1113)
+|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999988665 6889999999999999999 7999999999999997654433322 46889
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|.+++|++......+++++.|+.|++||+++......+..|...|.+++|+|+++ +|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEE
Confidence 99999998876556899999999999999998877777777777777777777665 799
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+++.||.|++||+.+++.+..+..+ ..|.+++|+|++.++++++. +.|++||+.++ ..+..+
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATE-HGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEET-TEEEEEETTTT-EEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC-CChhhh
Confidence 9999999999999999888776543 35899999999998887765 66999999887 454444
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-35 Score=340.69 Aligned_cols=244 Identities=9% Similarity=0.092 Sum_probs=183.5
Q ss_pred EcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC------CCeEEEEe
Q 001258 366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD------GSLFGVAY 439 (1113)
Q Consensus 366 ~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~ 439 (1113)
.+|+++ ++++|+.|++|+|||+.+++..... ...+.+|.+.|.+++|+|+ +.+||+++
T Consensus 169 ~~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 169 LNEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp --------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred cchhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 589999 5899999999999999887643210 0125678889999999997 57999999
Q ss_pred CCCeEEEEEccCCcee--------eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCc
Q 001258 440 SRHIVQIYSYHGGDEV--------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA 510 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~ 510 (1113)
.||+|+|||+.++... .+..++.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|..
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~ 309 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS 309 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence 9999999999876422 1223678999999999999864 59999999999999999874 4567899999
Q ss_pred CEEEEeeeecCCc-eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 511 PVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 511 ~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
.|.++++...+++ .+|+||+.|++|++||+++......+..+... ..+..++|+|++..+
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------------------~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------------------SNLVPVVYCPQIYSY 370 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------------------CSCCCEEEETTTTEE
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------------------CcccceEeCCCcCeE
Confidence 9999954445565 79999999999999999876554443332210 123345555555579
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
++++.|++|++||++++.++..+..| ...|.+++|+|++++|++|+.||+|++||+..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999999999999999988888765 55899999999999999999999999998643
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-34 Score=327.23 Aligned_cols=318 Identities=14% Similarity=0.195 Sum_probs=219.2
Q ss_pred cccCCCcceEEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeeeee--cccCCeeEEEEcCC----CCeeEEEE
Q 001258 415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 484 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~----~~~~~l~s 484 (1113)
+..+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 56799999999999984 4566666667799999999888766443333 26788999999999 55 7999
Q ss_pred ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEE
Q 001258 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 561 (1113)
Q Consensus 485 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 561 (1113)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999998762 4479999999999999999875544433 223333
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 641 (1113)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 344445555555555555555
Q ss_pred EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1113)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1113)
|++||+.++ +....+.... .+.+.+ ..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~-----------------------------------~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPNK-----------------------------------TNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGGG-----------------------------------CSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCCC-----------------------------------Ccccccc
Confidence 555554443 1111111100 000000 0000000
Q ss_pred CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
.......+..
T Consensus 217 ~~~~~~~~~~---------------------------------------------------------------------- 226 (366)
T 3k26_A 217 QKIHFPDFST---------------------------------------------------------------------- 226 (366)
T ss_dssp EEECCCSEEE----------------------------------------------------------------------
T ss_pred eeeccCcccc----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCce--------------eeeecCCCCCeeEEE
Q 001258 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 866 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~i~~l~ 866 (1113)
. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 0145555566665 44555555 56666666554432 566778888999999
Q ss_pred EecCC--CcEEEEEecCCcEEEEEccccee----eeeeccc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 867 FHPQD--NNIIAIGMDDSSIQIYNVRVDEV----KSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 867 ~s~~d--~~~la~g~~dg~v~iwd~~~~~~----~~~l~~h--~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
|+| + +++|++|+.||.|++||+.+++. ...+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 7 99999999999999999998754 3477887 79999999999999999999999999999853
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=323.18 Aligned_cols=357 Identities=14% Similarity=0.157 Sum_probs=249.4
Q ss_pred cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeee
Q 001258 379 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQ 457 (1113)
Q Consensus 379 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~ 457 (1113)
.++.+++|++..++... .+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....
T Consensus 21 ~~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 81 (408)
T 4a11_B 21 AESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81 (408)
T ss_dssp HHHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC
T ss_pred ccCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 34567778877665544 4788999999999999 999999999999999999998875542
Q ss_pred eeee----------ecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC-CceE
Q 001258 458 HLEI----------DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQF 525 (1113)
Q Consensus 458 ~~~l----------~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~ 525 (1113)
.... .+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCL 158 (408)
T ss_dssp EEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCE
T ss_pred EeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcE
Confidence 2111 25999999999999 555 79999999999999999999888887 77889999887643 4569
Q ss_pred EEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC
Q 001258 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS 605 (1113)
Q Consensus 526 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 605 (1113)
+++++.||.|++||+.+......+..+...|.+++|+|++.. .+++++.||.|++||+++
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY--------------------ILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT--------------------EEEEEETTSCEEEEETTC
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc--------------------EEEEEcCCCcEEEEECCC
Confidence 999999999999999998888888878887888877777651 388999999999999987
Q ss_pred Cc-eEEEEcc-------------CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258 606 VQ-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1113)
Q Consensus 606 ~~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1113)
+. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~------- 290 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN------- 290 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC-------
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc-------
Confidence 65 4444421 23445789999999999999999999999999987732 11111000000
Q ss_pred CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1113)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1113)
.
T Consensus 291 ------------------------------------------------------------------------------~- 291 (408)
T 4a11_B 291 ------------------------------------------------------------------------------S- 291 (408)
T ss_dssp ------------------------------------------------------------------------------C-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
.............+.
T Consensus 292 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 292 -----------------------------------------------------------------KKGLKFTVSCGCSSE 306 (408)
T ss_dssp -----------------------------------------------------------------SSCCCCEECCSSSSC
T ss_pred -----------------------------------------------------------------cccceeEEecCCCce
Confidence 000011111223444
Q ss_pred EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1113)
+++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~ 382 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN 382 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC--------------------
T ss_pred EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc
Confidence 55555699999999999999999999999999999999 8999999999999999999998877655443322 2233
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCC
Q 001258 912 H-ALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 912 ~-d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+ +...+.+.+.|+.+++|+...
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------
T ss_pred cccceeecccCccCceeecCCcc
Confidence 2 334556777899999998654
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-33 Score=326.82 Aligned_cols=241 Identities=15% Similarity=0.243 Sum_probs=190.7
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCC
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 433 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 433 (1113)
..|...|+||+|+|....+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| ++.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence 4589999999999965547999999999999999887654321 3578999999999998 789
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1113)
+|++|+.||+|+|||++++.. ........+...+.+++|+|+++ +|++|+.||+|++||+. ++.+..+.+|...|.
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence 999999999999999987643 32223334555789999999999 89999999999999975 567788999999999
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
+++|++..+ .++++++.|+.|++||+++......+ ..|...|.+++|+|+| ++|+
T Consensus 255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------------------~~l~ 312 (435)
T 4e54_B 255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------------------ARLL 312 (435)
T ss_dssp EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------------------SEEE
T ss_pred eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------------------CeeE
Confidence 999987543 58899999999999999876544322 3445555555555554 4799
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCC----CCcCeEEECCCCCEEEEEEC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~ 638 (1113)
+++.||.|++||+.++.....+..+... ..+..+.|+|++.+++++..
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY 364 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence 9999999999999999888777655321 12446788888888777643
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.9e-33 Score=317.31 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=242.0
Q ss_pred eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc------eeeEeeccCcCEEEEeeeec--CCc---eEE
Q 001258 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI 526 (1113)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l 526 (1113)
...+.+|.+.|++++|+| + +|++|+.|++|++||+.+++ .+..+.+|...|.+++|++. .++ .+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 346789999999999998 4 79999999999999999988 78899999999999998865 236 799
Q ss_pred EEEecCCcEEEEEcCCCCC-----eeeeeCC-----CCceEEEEEccCCCeEEeccccCceeEEEec----CCCCE-EEE
Q 001258 527 FSTALDGKIKAWLYDNLGS-----RVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLA 591 (1113)
Q Consensus 527 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~----~~~~~-l~~ 591 (1113)
++++.||.|++||+.+... ...+..+ ...|.+ ++|+ |++++ |++
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------------~~~~~~~~~~~~~~l~~ 143 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA---------------------LKWGASNDRLLSHRLVA 143 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE---------------------EEEECCC----CEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE---------------------EEEeeccCCCCceEEEE
Confidence 9999999999999988765 5555444 244444 4555 55568 999
Q ss_pred EecCCcEEEEECCC------CceEE-----EEcc-----CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258 592 AGDDFSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
++.||.|++||+.+ ++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +.+.
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~ 221 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLY 221 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEE
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeE
Confidence 99999999999988 66665 6643 3345679999999999 9999999999999998765 2211
Q ss_pred ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1113)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1113)
.+..
T Consensus 222 ~~~~---------------------------------------------------------------------------- 225 (397)
T 1sq9_A 222 NFES---------------------------------------------------------------------------- 225 (397)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEec----------------------------------------------------------------------------
Confidence 1100
Q ss_pred CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1113)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 815 (1113)
. .
T Consensus 226 ----------------------------------------------------------------------------~--~ 227 (397)
T 1sq9_A 226 ----------------------------------------------------------------------------Q--H 227 (397)
T ss_dssp ----------------------------------------------------------------------------C--C
T ss_pred ----------------------------------------------------------------------------c--c
Confidence 0 0
Q ss_pred CC---CCCccEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeeecC-------------CCCCeeEEEEecCCCcEE
Q 001258 816 NP---EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNII 875 (1113)
Q Consensus 816 ~~---~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~l 875 (1113)
.| ...|.+++|+|++++|++++ | +.|++||+.+++.+..+.. |...|.+++|+| ++++|
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 306 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETL 306 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEE
Confidence 03 56677888888888888887 6 7888888888888888887 899999999999 89999
Q ss_pred EEEecCCcEEEEEcccceeeeeec------cc---------------ccCeEEEEEcCCC----------CEEEEEeCCC
Q 001258 876 AIGMDDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADS 924 (1113)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~L~s~s~D~ 924 (1113)
++++.||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++.|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999999999999999999 88 9999999999998 7999999999
Q ss_pred cEEEEeCCCC
Q 001258 925 QLCVWSSDGW 934 (1113)
Q Consensus 925 ~v~iwd~~~~ 934 (1113)
.|++|++.++
T Consensus 387 ~i~iw~~~~g 396 (397)
T 1sq9_A 387 SIRWFREAGG 396 (397)
T ss_dssp EEEEEEEEC-
T ss_pred cEEEEEcCCC
Confidence 9999999874
No 66
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-32 Score=307.45 Aligned_cols=306 Identities=11% Similarity=0.110 Sum_probs=243.9
Q ss_pred cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
.+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 344556679999999999999995 9999999999999999988776 37789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-----CcEEEEeCCCCc---
Q 001258 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 500 (1113)
Q Consensus 429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~--- 500 (1113)
+|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 9999999999999999999999998766 444 888999999999999 78888888 999999998764
Q ss_pred --------eeeEeeccCc--CEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258 501 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 501 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 231 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT--- 231 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS---
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC---
Confidence 3445566666 899999876 457999999999999999998 455556666666666666666655
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
+|++++.|+.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++...+|....
T Consensus 232 ------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 232 ------------------YFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp ------------------EEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC---------
T ss_pred ------------------EEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 799999999999999999999888873 34689999999999999999998666554322
Q ss_pred CccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeE
Q 001258 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1113)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1113)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 10 01245666
Q ss_pred eccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcccc
Q 001258 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1113)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1113)
+.......... .+|...|.+++|+|+++.|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 65543211111 237789999999999999999999999999998754
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-32 Score=339.66 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=175.9
Q ss_pred cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i 491 (1113)
.+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999986 479999999999999999864321 12336889999999999999999 89999999999
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEEccCCCeE
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~ 568 (1113)
+|||+.++.++..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 9999999999999999999999999875 4578999999999999997642221111 22344455555555442
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
...+++++.|+.|++||+.+++....+..| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 146999999999999999999998888766 4579999999999999999999999999987
Q ss_pred CC
Q 001258 649 DG 650 (1113)
Q Consensus 649 ~~ 650 (1113)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-32 Score=300.42 Aligned_cols=255 Identities=16% Similarity=0.207 Sum_probs=207.9
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 3459999999999999995 999999999999999753 2222 47899999999999874
Q ss_pred --CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEe
Q 001258 432 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 505 (1113)
Q Consensus 432 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~ 505 (1113)
|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ....+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 899999999999999999987522 22357789999999999998 67 79999999999999998764 24677
Q ss_pred eccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 506 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
.+|...|.+++|++.. ++.+|++|+.|+.|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999998752 24699999999999999998765 3345667777788777777641
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc--e-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--L-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
.+.+|++++.|++|++||+.+.. . ...+..+.+...|.+++|+|++++|++++.|+.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02369999999999999997743 1 223322344567899999999999999999999999997
Q ss_pred CC
Q 001258 648 SD 649 (1113)
Q Consensus 648 ~~ 649 (1113)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-32 Score=313.52 Aligned_cols=252 Identities=13% Similarity=0.196 Sum_probs=194.1
Q ss_pred EeccCCCCcEEEEEcCCC-CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258 353 RTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg-~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1113)
...+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++..... ...+|.+.|.+++|+|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQF 129 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETT
T ss_pred eccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCC
Confidence 334599999999999999 6 6999999999999999988765421 1347999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++++..+.+|..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence 789999999999999999996 44443333345668999999999999 7999999999999998 6888999999999
Q ss_pred CEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
.|.+++|++.. . ++++++.|+.|++||+++.. ....+ .+...|.+++|+|. +
T Consensus 206 ~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~--------------------~ 262 (383)
T 3ei3_B 206 KVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPT--------------------D 262 (383)
T ss_dssp CEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTT--------------------T
T ss_pred cEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCC--------------------C
Confidence 99999987644 5 89999999999999998732 22222 34444555555440 4
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCC-----CCCCcCeEEECCCCCEEE---------EEECCCcEEEEEcCCC
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLA---------VSTNDNGIKILATSDG 650 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~---------~~~~dg~i~iwd~~~~ 650 (1113)
+.+|++++.|+.|++||+.+++....+..+. +...+. +.|+|++..++ +++.|+.|++||+.++
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 5579999999999999999988776665432 122233 45555555444 3445666666666555
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=307.28 Aligned_cols=299 Identities=12% Similarity=0.173 Sum_probs=235.6
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecC-CceEEEEEecCCc
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 534 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 534 (1113)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|++.. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45789999999999999975 5667776 999999999998876543 3799999999988752 2579999999999
Q ss_pred EEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEE
Q 001258 535 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 612 (1113)
Q Consensus 535 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 612 (1113)
|++||+.+.. ....+..|...|.++.|.+. ++|+|++++|++++.|+.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 67778888888888866432 2356667789999999999999999887 67777
Q ss_pred ccCCC--CCCcCeEE----ECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhh
Q 001258 613 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 686 (1113)
Q Consensus 613 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1113)
..+.. ...+.+++ |+|+++++++++.||.|++||+.++. ....
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence 65433 23677787 78899999999999999999987651 1000
Q ss_pred cccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceE
Q 001258 687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 766 (1113)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 766 (1113)
.
T Consensus 206 -------------------------------------------------------------~------------------ 206 (357)
T 3i2n_A 206 -------------------------------------------------------------T------------------ 206 (357)
T ss_dssp -------------------------------------------------------------E------------------
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec---CCCEEEEEe-CCeEE
Q 001258 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 842 (1113)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s-dg~i~ 842 (1113)
.|...|.+++|+| ++.++++++ ||.|+
T Consensus 207 -------------------------------------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 207 -------------------------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp -------------------------------------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred -------------------------------------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 0344556666666 666666666 67777
Q ss_pred EEECCCCceeeeec-----CCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEcccc-------------------eeeee
Q 001258 843 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 897 (1113)
Q Consensus 843 vwd~~~~~~~~~~~-----~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~ 897 (1113)
+||+.+++....+. +|...|.+++|+| ++. +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77776655554443 8999999999999 776 8999999999999999753 46778
Q ss_pred ecccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC
Q 001258 898 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 934 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~ 934 (1113)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 899999999999999999998 8999999999999873
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=315.44 Aligned_cols=362 Identities=12% Similarity=0.156 Sum_probs=247.9
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1113)
.++.+++|++..++....+..| ...|.+++|+| ++++|++++.||.|++|++.++. ....+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~---------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV---------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE----------
T ss_pred ccCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc----------
Confidence 3556788888888877777765 55899999999 99999999999999999998762 2211110000
Q ss_pred CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1113)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1113)
.... .....+|..
T Consensus 88 --------------------------------------------------------~~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 88 --------------------------------------------------------CSIG-----------RDHPDVHRY 100 (408)
T ss_dssp --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred --------------------------------------------------------cccc-----------ccccccCCC
Confidence 0000 000023788
Q ss_pred ceEEEEEeC-CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC-
Q 001258 753 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND- 830 (1113)
Q Consensus 753 ~i~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~- 830 (1113)
.|.+++|+| ++..+++++.||.+++|++... ..... + .+...+.++++++.+
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~-~---~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADV-F---NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEE-E---ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------cccee-c---cCCCceeeeEeecCCC
Confidence 999999999 7789999999999999987632 11111 0 156678899998854
Q ss_pred --CEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEcccce-eeeee-------
Q 001258 831 --SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 898 (1113)
Q Consensus 831 --~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l------- 898 (1113)
.++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 4898888 89999999999999999999999999999999 555 79999999999999998754 33333
Q ss_pred --------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 899 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 899 --------~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.+|...|++++|+|++++|++++.|+.|++||+.+++.............. ............+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 579999999999999999999999999999999987643221111111111 0122333344455666668
Q ss_pred cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccce
Q 001258 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050 (1113)
Q Consensus 971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i 1050 (1113)
.++.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+.... .+..
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~~~~----- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD-------ETTT----- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC-------ceEe-----
Confidence 99999999999999998876 789999999999999999999999999999999998775443 1111
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1051 VIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1051 ~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
...+.|.+...+.+.+.|+.+++|+.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred ccccccccceeecccCccCceeecCCcc
Confidence 1223333455677888899999998653
No 72
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=310.68 Aligned_cols=258 Identities=13% Similarity=0.183 Sum_probs=204.5
Q ss_pred eeEecc-CCCCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 351 ~~~~~~-h~~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
+...+. |.+.|++++|+|++++++++|+. ||.|+|||+.+++.... ...+|...|.++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~ 71 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG 71 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence 334434 99999999999999888888887 99999999998876542 233688999999
Q ss_pred EEcCC---CCeEEEEeCCCeEEEEEccCCc-eeeeeeeeecccCCeeEEE------EcCCCCeeEEEEecCCCcEEEEeC
Q 001258 427 IWSPD---GSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIA------FSHPNKQLCVITCGDDKTIKVWDA 496 (1113)
Q Consensus 427 ~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~------~s~~~~~~~l~s~s~d~~i~iwd~ 496 (1113)
+|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 99998 7999999999999999999887 444 6789999999995 578888 7999999999999999
Q ss_pred CCCc-eeeEeeccCc----CEEEEeee--ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258 497 TNGA-KQYIFEGHEA----PVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 497 ~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++..... ...+...+.+++|+|.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~--- 222 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDI--- 222 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSS---
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCC---
Confidence 9987 7788876655 78888842 23566899999999999999998755432 233444555555555100
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEc---cCCCCCCcCeEEECCCCC-EEEEEECCCcEEEE
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKIL 645 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw 645 (1113)
+++++++++.||.|++||+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|
T Consensus 223 ---------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 223 ---------------SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp ---------------SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ---------------CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 45579999999999999998876554443 113355799999999998 89999999999999
Q ss_pred EcCCC
Q 001258 646 ATSDG 650 (1113)
Q Consensus 646 d~~~~ 650 (1113)
|+.++
T Consensus 288 d~~~~ 292 (357)
T 3i2n_A 288 KYEYP 292 (357)
T ss_dssp EEECC
T ss_pred ecCCC
Confidence 99876
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-32 Score=312.42 Aligned_cols=290 Identities=14% Similarity=0.229 Sum_probs=226.4
Q ss_pred ceeEEEecCCC-CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccc
Q 001258 576 SLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL 653 (1113)
Q Consensus 576 ~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1113)
.+.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++++|++++.|+.|++||+.+. .
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~ 152 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--V 152 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC--E
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC--c
Confidence 34444444444 579999999999999999999888887655677899999999 7899999999999999998632 1
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
...+..
T Consensus 153 ~~~~~~-------------------------------------------------------------------------- 158 (383)
T 3ei3_B 153 IQVFAK-------------------------------------------------------------------------- 158 (383)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred eEEEec--------------------------------------------------------------------------
Confidence 110000
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~ 891 (1113)
...+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 001456688888899999998888 899999998 5678888889999999999999 676 999999999999999998
Q ss_pred ----ceeeeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccccccc--CCCCCC-------CCCCCce
Q 001258 892 ----DEVKSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTP-------TAQSDTR 957 (1113)
Q Consensus 892 ----~~~~~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~ 957 (1113)
+.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 5666666 6999999999999 99999999999999999999876533211110 001110 0012233
Q ss_pred EEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 958 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 958 ~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
++|+|||++ ..+.|+.|++||+.+++.+..+....|...+.+++|+||+++|++|+ ||.|++||+++
T Consensus 316 ~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 555666655 22478999999999999999887655788889999999999999997 99999999875
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-32 Score=309.21 Aligned_cols=310 Identities=17% Similarity=0.251 Sum_probs=240.3
Q ss_pred cCCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258 356 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1113)
Q Consensus 356 ~h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1113)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 59999999999985 54456777778899999999887764311 1112347789999999999
Q ss_pred ---CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEe--
Q 001258 432 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 505 (1113)
Q Consensus 432 ---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-- 505 (1113)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999988665 6789999999999999 777 7999999999999999999999888
Q ss_pred -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-------------eEEec
Q 001258 506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 571 (1113)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~ 571 (1113)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 68999999999876 457999999999999999987544332221 011111111 01111
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--------------EEEEccCCCCCCcCeEEECCC--CCEEEE
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 635 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~ 635 (1113)
.+...+.+++|+ ++++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence 134467777777 66899999999999999987654 5666555 457999999999 999999
Q ss_pred EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1113)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1113)
++.||.|++||+.++........
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~--------------------------------------------------------- 327 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCT--------------------------------------------------------- 327 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEE---------------------------------------------------------
T ss_pred EecCCcEEEEECCCCCCccccce---------------------------------------------------------
Confidence 99999999999987621110000
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1113)
.+....+...|.+++|+|+++.|++++.||.|++||+.
T Consensus 328 ----------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 ----------------------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------------------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------------------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00001136889999999999999999999999999874
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-32 Score=312.54 Aligned_cols=257 Identities=12% Similarity=0.102 Sum_probs=210.3
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---- 431 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 431 (1113)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++.... ......+.+|...|.+++|+|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecCCCcEEEEEEecccccC
Confidence 4999999999999 5 599999999999999998771100 0001136689999999999999
Q ss_pred C---CeEEEEeCCCeEEEEEccCCce-----eeeeeeeecc-----cCCeeEEEEc----CCCCeeE-EEEecCCCcEEE
Q 001258 432 G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDDKTIKV 493 (1113)
Q Consensus 432 g---~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~~~~~~~-l~s~s~d~~i~i 493 (1113)
| ++|++++.|+.|++||+.+++. +. .+..| ...|.+++|+ |+++ + |++++.|+.|++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI 152 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence 9 9999999999999999998875 44 57778 5899999999 9999 7 999999999999
Q ss_pred EeCCC------Cceee-----Eeec-------cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---C
Q 001258 494 WDATN------GAKQY-----IFEG-------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---P 552 (1113)
Q Consensus 494 wd~~~------~~~~~-----~~~~-------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~ 552 (1113)
||+.+ ++.+. .+.+ |...|.+++|++ ++ ++++++.||.|++||+++......+.. |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 99998 77777 7754 889999999765 55 999999999999999998776666665 5
Q ss_pred ---CCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceEEEEccCC----------
Q 001258 553 ---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG---------- 616 (1113)
Q Consensus 553 ---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~---------- 616 (1113)
...+.+++|+|++ ++|++++.| +.|++||+.+++.+..+....
T Consensus 230 ~~~~~~i~~i~~~~~~---------------------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQG---------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp -CCCCCEEEEEECSST---------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred cccCCccceEEECCCC---------------------CEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence 5556665555555 479999999 999999999999999887610
Q ss_pred -CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 617 -GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 617 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 2457999999999999999999999999999887 5555443
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.8e-32 Score=308.57 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=204.5
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc--eeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
|.++|++++|+|+|++ |++|+.||.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999994 9999999999999999886 333 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce---ee-EeeccCc
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA 510 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~-~~~~h~~ 510 (1113)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ ++++++.|+.|++||+..+.. .. ...+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999887443 234568999999999999999 799999999999999998773 23 3367899
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCC------------------CCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
.|.+++|++ ++.++++++.||.|++||+.. ......+..+..
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------ 203 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence 999999876 457999999999999999752 233333333344
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
.+..++|+|++++|++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++++++++ .|+.|++|++.+
T Consensus 204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 4455555555568999999999999999999999998866 3479999999999988887 899999999987
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.7e-32 Score=308.65 Aligned_cols=324 Identities=13% Similarity=0.143 Sum_probs=239.7
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999886 123336889999999999999999 799999999999999
Q ss_pred CCCCceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee---e-eeCCCCceEEEEEccCCCeEE
Q 001258 496 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 496 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
+.+++.... +..|...|.+++|++ ++.+|++++.||.|++||++...... . ...+...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i------------- 145 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV------------- 145 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe-------------
Confidence 998875544 467999999999875 45799999999999999998766421 1 12233444
Q ss_pred eccccCceeEEEecCCCCEEEEEecCCcEEEEEC------------------CCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 631 (1113)
..++|+|+++++++++.||.|++||+ ..++.+..+..+ ...|.+++|+|+++
T Consensus 146 --------~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 146 --------LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp --------EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred --------eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 44555555558999999999999995 366777777655 45799999999999
Q ss_pred EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcccc
Q 001258 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 711 (1113)
Q Consensus 632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1113)
+|++++.|+.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999876 3322221
Q ss_pred CCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCce
Q 001258 712 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 791 (1113)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 791 (1113)
.|...|.+++|+|+++.++++ .|+.+++|++...
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~-------- 275 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA-------- 275 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence 145678999999999877666 8999999987520
Q ss_pred eeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEE---ECCCCce------eeeecCCCCCe
Q 001258 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKT------MATFMPPPPAA 862 (1113)
Q Consensus 792 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw---d~~~~~~------~~~~~~~~~~i 862 (1113)
.+..... +..... ..-..+....+++| +...... .....+|...|
T Consensus 276 ------------~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 276 ------------AGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp ------------TTEEEEC------CCCCCC----------------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred ------------CceEEEe------eccCcc--------ccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 0110000 000000 00011113445555 4332221 22234899999
Q ss_pred eEEEEecCCC---cEEEEEecCCcEEEEEcccce
Q 001258 863 TFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 863 ~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~~ 893 (1113)
++++|++.++ .+|++|+.||.|++||+.+++
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999876477 999999999999999998754
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-32 Score=316.97 Aligned_cols=293 Identities=15% Similarity=0.206 Sum_probs=221.2
Q ss_pred eeEEEecC-CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccce
Q 001258 577 LGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL 654 (1113)
Q Consensus 577 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1113)
|.+++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++++|++++.||+|++||+.++. .
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~--~ 199 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI--L 199 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE--E
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc--e
Confidence 44444444 23479999999999999999887776666666677899999998 78999999999999999975431 0
Q ss_pred eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1113)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1113)
..+..
T Consensus 200 ~~~~~--------------------------------------------------------------------------- 204 (435)
T 4e54_B 200 RVFAS--------------------------------------------------------------------------- 204 (435)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred eEEec---------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
.
T Consensus 205 -------------------------------------------------------------------------------~ 205 (435)
T 4e54_B 205 -------------------------------------------------------------------------------S 205 (435)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 893 (1113)
..+...+.+++|+|++++|++|+ ||.|++||+.. +.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 00344567889999999999998 89999999864 56778889999999999999555689999999999999998865
Q ss_pred eeee---ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 894 VKSK---LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 894 ~~~~---l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.... ..+|...|++++|+|||++|++++.|++|++||+.+++......... ........+....|+|++..++++
T Consensus 285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP--HRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC--CCCCSSSCCCBCEECSSSSCEEEE
T ss_pred ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc--ccccccceeEEEEEcCCCCEEEEE
Confidence 4433 36799999999999999999999999999999999876543211111 000001123455677776666653
Q ss_pred -------------cCCeEEEEeCCccceeeccccCCCCCCeeEE-EECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258 971 -------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus 971 -------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
.++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |+.|+||++.+++..
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 23579999999999988765 3678888887 6999999999876 889999999988653
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=296.83 Aligned_cols=246 Identities=19% Similarity=0.261 Sum_probs=207.0
Q ss_pred ceeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 350 ~~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
+..+.+ +|.+.|++++| |++++ |++|+.||.|++||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344444 49999999999 99995 9999999999999998877655 35678999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1113)
Q Consensus 429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 508 (1113)
+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 999999999999999999999876544445578899999999999 466 799999999999999 77888899999
Q ss_pred CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
...+.+++|.+. ++.++++++.||.|++||.. .....+.. +...+.+++|+|++.
T Consensus 142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~--------------------- 197 (313)
T 3odt_A 142 NASVWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH--------------------- 197 (313)
T ss_dssp SSCEEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE---------------------
T ss_pred CCceeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe---------------------
Confidence 999999998763 44799999999999999933 33444444 555666666666554
Q ss_pred EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+++++.||.|++||+.+++.+..+..+ ...|.+++|+|++ .+++++.||.|++||+.++
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 899999999999999999999998766 4579999999999 5889999999999998877
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=317.18 Aligned_cols=327 Identities=12% Similarity=0.100 Sum_probs=244.4
Q ss_pred cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 463 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.-...|.+|+|+|||+ ++||++.|++|+ |...++++ .+|...|.+++|+|.+ .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~-- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA-- 74 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC--
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC--
Confidence 4457999999999999 899999999999 76555544 7999999999987643 4555555543
Q ss_pred CCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC---C
Q 001258 543 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 618 (1113)
Q Consensus 543 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 618 (1113)
+....+. .+...|.+++|+|+|. +|++++.||.|++||..+ ++..+. +.. .
T Consensus 75 -~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 75 -QQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -CSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -CCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 3222222 2345566666666655 799999999999999644 555555 321 1
Q ss_pred CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccc
Q 001258 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698 (1113)
Q Consensus 619 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1113)
..+.+++|||||++|++|+.||+|++|++.++. .... .|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~----------------------- 168 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF----------------------- 168 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence 258899999999999999999999999987651 1000 00
Q ss_pred cccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEE
Q 001258 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 778 (1113)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 778 (1113)
+. +..+
T Consensus 169 ---------------------------i~-----------------------------------------------l~ti 174 (588)
T 2j04_A 169 ---------------------------YF-----------------------------------------------ESSI 174 (588)
T ss_dssp ---------------------------EE-----------------------------------------------EEEE
T ss_pred ---------------------------ee-----------------------------------------------eeee
Confidence 00 0000
Q ss_pred EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCce---eeee
Q 001258 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF 855 (1113)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~ 855 (1113)
.. .. .+|...|.+++|+||| +++++.|++|++||+.++.. .+++
T Consensus 175 ~~------------------------------~~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 175 RL------------------------------SD--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EC------------------------------SC--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred ec------------------------------cc--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence 00 00 1267789999999999 44444499999999987774 3456
Q ss_pred -cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE--cCCCCEEEEEeCCCcEEEEeCC
Q 001258 856 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 856 -~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
.+|...|.+++|+ ++.||+++ ++.|++||+.+++......+|.+.|.+++| +||+..|++++.||+ ++|..+
T Consensus 222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 4788899999999 37888887 699999999988774444489999999999 999999999999999 999976
Q ss_pred CCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
. ++++||+..++.. |+++++|+..... ...+ .+...|.+++|||||+.+|+
T Consensus 297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence 2 5589999887775 9999999986554 3333 23667999999999999998
Q ss_pred Ee
Q 001258 1013 CF 1014 (1113)
Q Consensus 1013 ~~ 1014 (1113)
++
T Consensus 348 ~~ 349 (588)
T 2j04_A 348 VY 349 (588)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-33 Score=318.55 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=194.5
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
|.+.|++++|+|+|++ |++|+.||.|+|||+.++ +.+. .+.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 6789999999999994 999999999999999987 3332 47789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc---eeeEeec-cCc
Q 001258 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 510 (1113)
Q Consensus 435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-h~~ 510 (1113)
|++++.|++|+|||+.+++.......+.+|...|.+++|+|+++ +|++++.|++|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333446788999999999999999 79999999999999999887 4778888 999
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC--CC--ceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 586 (1113)
.|.+++|++ ++.+|++++.||.|++||+............ .. ....+. ..+ .+...+..++|+|++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 999999876 4579999999999999999643311110000 00 000000 001 233456677777777
Q ss_pred CEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 587 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
++|++++.|+.|++||+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7899999999999999999887 6666655 4479999999999999998776665 66554
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-32 Score=308.69 Aligned_cols=294 Identities=12% Similarity=0.152 Sum_probs=215.8
Q ss_pred cCCeeEEEEcCCCCeeEEEEecCCC-------cEEEEeCCCCcee----------eEeeccCcCEEEEeeeecCCceEEE
Q 001258 465 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF 527 (1113)
Q Consensus 465 ~~~V~~v~~s~~~~~~~l~s~s~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~ 527 (1113)
..+|++++|+||++ +|++||.|. .|++|++..+... ..+.+|...|.++++. . ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence 35899999999999 789987544 5999998765321 2456777778777642 3 4677
Q ss_pred EEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1113)
Q Consensus 528 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1113)
+|..++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 76655444333 33345566666654432
Q ss_pred eE----EEEc---cCCCCCCcCeEEECCCCCEEEEEE--CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258 608 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1113)
Q Consensus 608 ~~----~~~~---~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1113)
.. .... .......+.+++|+|||+++++++ .|++|++||+.++ +....+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~-------------------- 174 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE-------------------- 174 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE--------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC--------------------
Confidence 11 1111 112223477899999999987655 6899999999877 2222111
Q ss_pred hhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEE
Q 001258 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1113)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 758 (1113)
|...|.+++
T Consensus 175 -----------------------------------------------------------------------~~~~V~~v~ 183 (365)
T 4h5i_A 175 -----------------------------------------------------------------------TRGEVKDLH 183 (365)
T ss_dssp -----------------------------------------------------------------------CSSCCCEEE
T ss_pred -----------------------------------------------------------------------CCCceEEEE
Confidence 445688999
Q ss_pred EeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc-ccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1113)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 837 (1113)
|+|||+++++++.++. .+|+.. ++... .... ..|...|.+++|+|+++++++++
T Consensus 184 fspdg~~l~s~s~~~~-~~~~~~----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSL-EVISTV----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ECTTSSEEEEECSSCE-EEEETT----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccceeE-EEEEec----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence 9999999988886654 444432 12211 1111 23778899999999999999997
Q ss_pred -CC----eEEEEECCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee-cccccCeEE
Q 001258 838 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG 907 (1113)
Q Consensus 838 -dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~ 907 (1113)
|+ .+++|++..... ...+.+|...|++++|+| ++++||+|+.|+.|+|||+.+++++..+ .+|...|++
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 65 588899876543 345778999999999999 9999999999999999999999999875 799999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGW 934 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~ 934 (1113)
|+|+|||++|||+|.|++|+||++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999653
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-31 Score=292.92 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=234.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
.+.+|.+.|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 58899999999999 999999999999999999998887555 6778999999999999999 89999999999999
Q ss_pred eCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258 495 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 495 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
++... +.+..+.+|...|.+++|. +.++++++.||.|++|| .......+..+...+.++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~------- 153 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF------- 153 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-------
T ss_pred EeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-------
Confidence 98754 5677889999999999972 35899999999999999 44555566667766766666551
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
+++.+++++.|+.|++|| .++....+... +...+.+++|+|++. +++++.||.|++||+.++
T Consensus 154 -------------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~- 215 (313)
T 3odt_A 154 -------------SENKFLTASADKTIKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG- 215 (313)
T ss_dssp -------------TTTEEEEEETTSCEEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-
T ss_pred -------------CCCEEEEEECCCCEEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-
Confidence 334799999999999999 45566666541 245789999999998 889999999999998655
Q ss_pred cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1113)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1113)
+.+..+.
T Consensus 216 ~~~~~~~------------------------------------------------------------------------- 222 (313)
T 3odt_A 216 DVLRTYE------------------------------------------------------------------------- 222 (313)
T ss_dssp CEEEEEE-------------------------------------------------------------------------
T ss_pred hhhhhhh-------------------------------------------------------------------------
Confidence 1111000
Q ss_pred cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1113)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 811 (1113)
T Consensus 223 -------------------------------------------------------------------------------- 222 (313)
T 3odt_A 223 -------------------------------------------------------------------------------- 222 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 812 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
.|...|.+++|+|++. +++++ ||.|++||+.+++....+..|...|.+++|+| +++ +++++.||.|++||+.
T Consensus 223 ----~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 223 ----GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ----CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred ----cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 1566788888888884 55665 89999999999999999999999999999999 777 5569999999999999
Q ss_pred cceeeeee
Q 001258 891 VDEVKSKL 898 (1113)
Q Consensus 891 ~~~~~~~l 898 (1113)
+++.....
T Consensus 296 ~~~~~~~~ 303 (313)
T 3odt_A 296 KSRWASED 303 (313)
T ss_dssp GGGCCC--
T ss_pred CCceeehh
Confidence 87765443
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=314.71 Aligned_cols=315 Identities=7% Similarity=-0.027 Sum_probs=228.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
-...|.+++|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 357899999999999 599999999999 754443 246899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc-----C
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 511 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~ 511 (1113)
.++.+.+|+.+....+ ++ .|...|.+++|||||+ .|++++.||+|++||... ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4665555554432211 22 5688999999999999 799999999999999544 667777 765 4
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-------eeee----eCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
|.+++|+| +|++|++|+.||+|++||+.++.. ...+ .+|.. .+..+
T Consensus 132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~---------------------~V~sV 188 (588)
T 2j04_A 132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD---------------------WVTHI 188 (588)
T ss_dssp EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC---------------------CEEEE
T ss_pred EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc---------------------cEEEE
Confidence 99999865 568999999999999999987542 2232 22233 45555
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+|+|++ +++++.|+.|++||+.++.. ...+.. .+...|.+++|+ |+.|++++ +++|++||+.++......+
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~ 262 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT 262 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc
Confidence 566666 78889999999999988774 345531 224579999999 68899887 6999999988762211111
Q ss_pred ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1113)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1113)
T Consensus 263 -------------------------------------------------------------------------------- 262 (588)
T 2j04_A 263 -------------------------------------------------------------------------------- 262 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceecccCcccccCceEEEEE--eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258 738 NQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1113)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 815 (1113)
+|...+..++| +|++..++++..+|+ ++|...
T Consensus 263 -----------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------------------------- 296 (588)
T 2j04_A 263 -----------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------------------------- 296 (588)
T ss_dssp -----------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------------------------
T ss_pred -----------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------------------------
Confidence 26677888899 999988888888998 888753
Q ss_pred CCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001258 816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~ 879 (1113)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus 297 -------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 297 -------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp -------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred -------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 24466666655554 6666666654332 333333 44466666666 666666654
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-31 Score=303.87 Aligned_cols=295 Identities=16% Similarity=0.228 Sum_probs=239.9
Q ss_pred CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
|..+...-+|.+.+.+.++++++.. +++++.||.|++||+.+++.... ....|...|.+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~ 141 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK 141 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence 4444454567666544444434454 66778899999999999887653 2334889999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEee
Q 001258 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE 506 (1113)
Q Consensus 428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~ 506 (1113)
|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++||+. .+..+..+.
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence 99999999999999999999999988666 678999999999994 45 79999999999999999 567788899
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 586 (1113)
+|.+.|.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++.
T Consensus 215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------- 272 (401)
T 4aez_A 215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS-------------------- 272 (401)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence 9999999999876 558999999999999999998877777777888888888887765
Q ss_pred CEEEEEe--cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE--CCCcEEEEEcCCCccceeccccccc
Q 001258 587 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAY 662 (1113)
Q Consensus 587 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1113)
..+++++ .|+.|++||+.+++.+..+..+ ..|.+++|+|+++++++++ .||.|++|++.++ ......
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~----- 343 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV----- 343 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-----
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-----
Confidence 2355554 7999999999999999888643 3699999999999999954 8999999998765 111110
Q ss_pred cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1113)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1113)
.+
T Consensus 344 -------------------------------------------------------------------~~----------- 345 (401)
T 4aez_A 344 -------------------------------------------------------------------DI----------- 345 (401)
T ss_dssp -------------------------------------------------------------------EE-----------
T ss_pred -------------------------------------------------------------------Ee-----------
Confidence 00
Q ss_pred cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
.+|...|.+++|+|+++.|++++.||.|++|++..
T Consensus 346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12667899999999999999999999999998764
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.6e-32 Score=304.30 Aligned_cols=295 Identities=10% Similarity=0.069 Sum_probs=218.3
Q ss_pred cCceEEEEEeCCCceEEEeecC-------CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 751 ATKISRLIFTNSGNAILALASN-------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
..+|.+++|+||++.|++|+.+ +.|++|++.............. ....+. .|...+.+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~-------------~~~~l~--~~~~~v~s 78 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHIL-------------SEFALE--DNDDSPTA 78 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEE-------------EEEECC--TTSCCCCE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeee-------------eEEEcc--CCCCceEE
Confidence 3579999999999999998764 3599998864322111000000 001122 26777877
Q ss_pred EEEecCCCEEEEEe------------CCeEEEEECCCCceeee---------ecCCCCCeeEEEEecCCCcEEEEE--ec
Q 001258 824 FALSKNDSYVMSAS------------GGKISLFNMMTFKTMAT---------FMPPPPAATFLAFHPQDNNIIAIG--MD 880 (1113)
Q Consensus 824 l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~---------~~~~~~~i~~l~~s~~d~~~la~g--~~ 880 (1113)
+++ +++.+++|. |+++++|++........ ...+...+.+++||| ||+++|++ +.
T Consensus 79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~ 155 (365)
T 4h5i_A 79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV 155 (365)
T ss_dssp EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence 765 556676652 56799999875432211 122345688999999 88887654 47
Q ss_pred CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 960 (1113)
|+.|+|||+.+++++..+. |.+.|++|+|+|||++|++++.|+ +++|+..+++... .....++. ..+.+++|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence 8999999999999988886 778899999999999999998655 6667666654322 12222333 36899999
Q ss_pred ccCCcEEEE-EcCC----eEEEEeCCcccee--eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 961 HQDQIHFLV-VHET----QLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 961 spdg~~l~~-~~d~----~v~v~d~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+|+|.++++ +.++ .+++|++...... ......+|...|++++|+|||++||+|+.|++|+|||+.+++.+..+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999998 4554 5888888766432 22233478899999999999999999999999999999999988764
Q ss_pred CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
. .+|...|+. ++|+| ||++||+|+.|++|+||+++...
T Consensus 308 ~------~gH~~~V~~--v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 308 K------QAHSFAITE--VTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp T------TSSSSCEEE--EEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred c------CcccCCEEE--EEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 2 289999985 99999 89999999999999999997544
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9e-31 Score=301.82 Aligned_cols=298 Identities=15% Similarity=0.230 Sum_probs=226.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
.++.|+||++ ++||+|. |++|+|||..+|+..+ ...+.+|...|++|+|+|+|+ +|++|+.|++|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5678999986 4777775 9999999999998664 335668889999999999999 899999999999999999999
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe-eeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
+..+.+|...+.+++++ +.++++|+.|+.+++||....... ..+..|...+..+.+++++
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g--------------- 242 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG--------------- 242 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---------------
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---------------
Confidence 99999999999998863 368999999999999998865443 3455566656555555555
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCCC-CEEEEE--ECCCcEEEEEcCCCccc
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 653 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~ 653 (1113)
.++++++.|+.+++|+..+++. +.....+ ...|.+++|+|++ .+++++ +.|++|++||+.++ ..
T Consensus 243 ------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~ 313 (420)
T 4gga_A 243 ------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-AC 313 (420)
T ss_dssp ------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred ------CeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cc
Confidence 4799999999999999987653 3344433 4578999999954 555554 46899999988766 11
Q ss_pred eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1113)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1113)
...+.
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (420)
T 4gga_A 314 LSAVD--------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeec---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 233456677788888777664 78999999999999999999999999999999 89999999999999999998
Q ss_pred cceeeeeecccccCeEEEEEc
Q 001258 891 VDEVKSKLKGHSKRITGLAFS 911 (1113)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s 911 (1113)
..........+...+....|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCC----------------
T ss_pred CCCccchhhhccCCccccccC
Confidence 776666666565555444443
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.2e-31 Score=287.79 Aligned_cols=223 Identities=16% Similarity=0.270 Sum_probs=180.3
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 492 (1113)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ....++.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 4789999999999999999999999999999999975421 123378899999999999874 67 799999999999
Q ss_pred EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
+||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+++... ...+..|...|.+++|+|++...
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 567788899999999998875568999999999999999987532 34567788889999999875311
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc----eEEEEccCCCCCCcCeEEECCCC---CEEEEEECCCc
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNG 641 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~ 641 (1113)
... ....+++++|++|+.|+.|++||+.+++ ....+..| ...|.+++|+|++ .+|++++.|++
T Consensus 161 ~~~--------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 161 DGE--------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp -----------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred ccc--------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCc
Confidence 000 0112345689999999999999998766 45556555 5589999999984 89999999999
Q ss_pred EEEEEcCCC
Q 001258 642 IKILATSDG 650 (1113)
Q Consensus 642 i~iwd~~~~ 650 (1113)
|++||+.++
T Consensus 231 v~iWd~~~~ 239 (297)
T 2pm7_B 231 CIIWTQDNE 239 (297)
T ss_dssp EEEEEESST
T ss_pred EEEEEeCCC
Confidence 999998654
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=311.30 Aligned_cols=294 Identities=14% Similarity=0.165 Sum_probs=221.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
+...|.+++|+|++++|++++.|+.|++|++..... .. ...+. +|...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence 557899999999999999999999999999863210 01 11122 38899999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCc---eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---eeeeecc-c
Q 001258 830 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H 901 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~-h 901 (1113)
+++|++++ |++|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 8999999999876 6677888999999999999 89999999999999999999876 4678887 9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-------------ccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
...|++++|+|++++|++++.|++|++||+...+... ..+.... +|. ..|.+++|+|+|++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 9999999999999999999999999999996432111 1122222 333 4799999999999999
Q ss_pred E-EcCCeEEEEeCCccce----eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc--eeeecCC------
Q 001258 969 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINP------ 1035 (1113)
Q Consensus 969 ~-~~d~~v~v~d~~~~~~----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~--~~~~~~~------ 1035 (1113)
+ +.|+.|++||+.+++. +..+. +|...|.+++|+||+++|++++.|+.+ +|+..... ....+..
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 8 5899999999999987 55554 789999999999999999999866666 66664221 1111110
Q ss_pred -------------------------------------CcccCCCcccCccceEEEEeCCCCC---EEEEEeCCCcEEEEe
Q 001258 1036 -------------------------------------SAYLPAGVSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1036 -------------------------------------~~~~~~gh~~~v~~i~~~~~p~d~~---~l~s~~~Dg~v~vW~ 1075 (1113)
......+|.+.|.. +.+.+.++. .|+|++.||.|++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~--~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT--LRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE--EEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEE--EeccCCCCCceEEEEeecCCCcEEEec
Confidence 00112248888886 555553444 799999999999998
Q ss_pred c
Q 001258 1076 P 1076 (1113)
Q Consensus 1076 ~ 1076 (1113)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 6
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-30 Score=288.62 Aligned_cols=283 Identities=18% Similarity=0.270 Sum_probs=218.3
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~ 501 (1113)
..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|++++|+|+++ ++++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999986 77766 599999999999987653 24568889999999999999 799999999999999999999
Q ss_pred eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
+..+.+|...+.++.+ .+ .++++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 9999999998887663 22 477888888877777655311
Q ss_pred ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1113)
..+..+..| ...+..+.++++++++++++.|+.|++||+.++.........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 112223333 346788999999999999999999999998776211100000
Q ss_pred ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1113)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1113)
.
T Consensus 192 ---------------------------------------------------------------------~---------- 192 (318)
T 4ggc_A 192 ---------------------------------------------------------------------F---------- 192 (318)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1113)
Q Consensus 742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v 821 (1113)
. .+...|
T Consensus 193 ------~-------------------------------------------------------------------~~~~~v 199 (318)
T 4ggc_A 193 ------T-------------------------------------------------------------------QHQGAV 199 (318)
T ss_dssp ------C-------------------------------------------------------------------CCCSCE
T ss_pred ------c-------------------------------------------------------------------ccCCce
Confidence 0 033445
Q ss_pred cEEEEecCCCEEE---EEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCCcEEEEEcccceee
Q 001258 822 PCFALSKNDSYVM---SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 822 ~~l~~s~~~~~l~---~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~ 895 (1113)
.+++++|++..++ +++ +++|++||........... +...+..+.|+| ++..+++++ .|+.|+|||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 5555555444322 233 6889999998877666554 566799999999 666665544 7999999999999999
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
..+.+|.+.|++++|+||+++|+|+|.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999876
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.5e-31 Score=306.70 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=201.0
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC------------cc
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 422 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 422 (1113)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++....... .. ......+.+|. +.
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~-------~~-~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR-------GE-YNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC-------CC-EEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc-------cc-eeEecccccccccccccccccccCc
Confidence 457899999999999995 99999999999999998763110000 00 00011467887 88
Q ss_pred eEEEEEcCCC--CeEEEEeCCCeEEEEEccCCceee------------------------------------eeee-eec
Q 001258 423 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA 463 (1113)
Q Consensus 423 V~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-l~~ 463 (1113)
|.+++|+|++ .+|++++.|++|++||+.++.... .... ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754311 0012 368
Q ss_pred ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-Cceee-------EeeccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1113)
Q Consensus 464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1113)
|...|.+++|+|+++ +|++| .|++|++||+.+ ++.+. .+.+|...|.+++|++... .+|++|+.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 44444 2568999999999876431 699999999999
Q ss_pred EEEEcCCCCC----eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEE
Q 001258 536 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT 610 (1113)
Q Consensus 536 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 610 (1113)
++||+++... ...+..+.... .... ...+...+..++|+|++.+|++++. +.|++||+.+ ++++.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPS--------NRSF-FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-------------CCH-HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEECcCCccccceeeEeccCCCcc--------cccc-ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999998765 44555444300 0000 0011124555555666668999888 9999999997 88888
Q ss_pred EEccCCCCCC-------------cCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258 611 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1113)
Q Consensus 611 ~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 651 (1113)
.+..+..... +..++|+|++++|++++.||.|++||+.++.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 8876642111 2349999999999999999999999999873
No 92
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.7e-29 Score=325.25 Aligned_cols=445 Identities=10% Similarity=0.005 Sum_probs=314.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------CCcEE
Q 001258 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIK 492 (1113)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~ 492 (1113)
+.+.+.+.+||| ++||.++. +.|.+|++.+++.. .+.+|...|.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456899999995 58888775 68999999988643 4778999999999999999 5665543 34799
Q ss_pred EEeCCCCceeeEeeccCcCE-------EEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258 493 VWDATNGAKQYIFEGHEAPV-------YSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1113)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1113)
+||+.+++ ...+..|...+ ..++|++ ||+++++++.+ ..|..|++..+... .+... ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLG--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSC--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCC--Cccee
Confidence 99988776 57788888888 8888875 44677777754 35777777654322 11111 11223
Q ss_pred EEccCCCeEEeccccCceeEEEecCCCCEEEEEec------------CCcEEEEECCCCceEEEEccCCCCCCcCeEEEC
Q 001258 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627 (1113)
Q Consensus 560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 627 (1113)
+ |+| | .+++++. +...++|....+.....+..+ ...+.++.|+
T Consensus 158 ~---------------------~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~--~~~v~~~~~s 212 (1045)
T 1k32_A 158 L---------------------FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM--STHVSSPVIV 212 (1045)
T ss_dssp E---------------------EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC--SSCCEEEEEE
T ss_pred e---------------------eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC--CCcccceEEe
Confidence 3 444 4 4555532 334556653333444455444 4578999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCC
Q 001258 628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 707 (1113)
Q Consensus 628 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1113)
++ .++++++.++.+.+|.+.......+.+..
T Consensus 213 ~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~------------------------------------------------ 243 (1045)
T 1k32_A 213 GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS------------------------------------------------ 243 (1045)
T ss_dssp TT-EEEEEECTTSSCEEEEEETTSCSCEECCC------------------------------------------------
T ss_pred CC-EEEEEEeccCceEEEEEeCCCCcceEecC------------------------------------------------
Confidence 98 67777888899999976532111111100
Q ss_pred ccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCC
Q 001258 708 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787 (1113)
Q Consensus 708 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 787 (1113)
+ ..+...+|+|||+.++.+ .++.+++|++.....
T Consensus 244 ------------------------------------------~-~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-- 277 (1045)
T 1k32_A 244 ------------------------------------------F-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-- 277 (1045)
T ss_dssp ------------------------------------------C-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE--
T ss_pred ------------------------------------------C-CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEe--
Confidence 1 123456899999988776 588999998631110
Q ss_pred CCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeeecCCCC-CeeE
Q 001258 788 SGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPP-AATF 864 (1113)
Q Consensus 788 ~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~-~i~~ 864 (1113)
. .+.... ...... ..+...+.+++|+ |||++|++++++.|.+|++.++... .+..+.. .+..
T Consensus 278 -----~-------~l~~~~~~~~~~~--~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~ 342 (1045)
T 1k32_A 278 -----E-------KIEIGDLESPEDR--IISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVR 342 (1045)
T ss_dssp -----E-------ECCCCCCCBCCSE--EEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEE
T ss_pred -----e-------eeccCcccccccc--cccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEe
Confidence 0 000000 000000 0145578999999 9999999999999999999877654 4566666 7999
Q ss_pred EEEecCCCcEEEEEecCCcEE-EEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258 865 LAFHPQDNNIIAIGMDDSSIQ-IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1113)
Q Consensus 865 l~~s~~d~~~la~g~~dg~v~-iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1113)
++|+ |++.|++++.++.+. +||+.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.+++...
T Consensus 343 ~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~----- 414 (1045)
T 1k32_A 343 RGGD--TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV----- 414 (1045)
T ss_dssp ECSS--SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred eeEc--CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE-----
Confidence 9999 677888888888898 9999877654 444888899999999999999999999999999999865422
Q ss_pred cCCCCCCCCCCCceEEEccCCcEEEEE-cC----------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 944 IPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 944 ~~~~~~~~~~~i~~~~~spdg~~l~~~-~d----------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
...++. ..+..++|||||++|+++ .+ +.|++||+.+++ +..+. .|...+.+++|+|||++|++
T Consensus 415 ~~~~~~---~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 415 IERSRE---AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp EEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEEECTTSCEEEE
T ss_pred eccCCC---CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCceEcCCCCEEEE
Confidence 222222 367899999999999884 43 389999999887 34433 56778899999999999999
Q ss_pred EeCCCcEEEEecCCC
Q 001258 1013 CFLDATVCVFSAANL 1027 (1113)
Q Consensus 1013 ~~~Dg~v~vwd~~~~ 1027 (1113)
++.++...+|+....
T Consensus 489 ~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 489 LSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EESCCCCCEECSSSS
T ss_pred EecccCCcCcchhcc
Confidence 999888888876543
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-30 Score=298.90 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=222.9
Q ss_pred CCCcc--eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 418 DPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 418 ~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
+|... +.+++|++ ..+++++.|+.|++||+.+++... .+. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 55544 45566664 568888999999999999998665 233 3899999999999999 79999999999999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
|+.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..+...|.+++|+|++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 230 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL------- 230 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-------
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-------
Confidence 999999999999999999999983 25899999999999999984 344455666666666666666554
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEE--CCCcEEEEEcCCC
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG 650 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~iwd~~~~ 650 (1113)
++++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .++++++ .|+.|++||+.++
T Consensus 231 --------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 231 --------------QLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp --------------EEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred --------------EEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 7999999999999999999998888765 4579999999976 5566654 6999999998765
Q ss_pred ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1113)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1113)
+.+..+.
T Consensus 295 -~~~~~~~------------------------------------------------------------------------ 301 (401)
T 4aez_A 295 -ARVNTVD------------------------------------------------------------------------ 301 (401)
T ss_dssp -CEEEEEE------------------------------------------------------------------------
T ss_pred -CEEEEEe------------------------------------------------------------------------
Confidence 1111100
Q ss_pred ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1113)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 810 (1113)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEecCCcEE
Q 001258 811 DVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1113)
Q Consensus 811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~ 885 (1113)
+...|.+++|+|+++++++++ ||.|++||+.+++.. ..+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 302 ------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 302 ------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK 374 (401)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred ------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 233466677777777777632 678888888775443 34678999999999999 899999999999999
Q ss_pred EEEcccceeeeee
Q 001258 886 IYNVRVDEVKSKL 898 (1113)
Q Consensus 886 iwd~~~~~~~~~l 898 (1113)
+|++.+++.+...
T Consensus 375 iw~~~~~~~~~~~ 387 (401)
T 4aez_A 375 FWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCC-------
T ss_pred EEECCCCcccccc
Confidence 9999998876554
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-31 Score=294.40 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=175.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 492 (1113)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++ +. +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999987532 23478899999999999864 66 799999999999
Q ss_pred EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccCCCe
Q 001258 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
+||++++. .+..+.+|...|.+++|++..++.+|++|+.||.|++||++.... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999999876678999999999999999987533 2344567778888899887420
Q ss_pred E-EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC---ceEEEEccCCCCCCcCeEEECCCC----CEEEEEECC
Q 001258 568 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 639 (1113)
Q Consensus 568 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 639 (1113)
- +..+..+ .....+.+|++++.|+.|++||+..+ +.+..+..| ...|.+++|+|++ ++|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 0 0000000 01122468999999999999999755 344445544 5689999999986 899999999
Q ss_pred CcEEEEEcCCC
Q 001258 640 NGIKILATSDG 650 (1113)
Q Consensus 640 g~i~iwd~~~~ 650 (1113)
++|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.1e-30 Score=296.26 Aligned_cols=286 Identities=17% Similarity=0.264 Sum_probs=236.0
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
..-.+..++|++++ .| +.+.|++|+|||.. +|.+... +...+|...|++++|+|+
T Consensus 104 ~d~y~~~l~wS~~n-~l-Avgld~tV~lWd~~----------------------tg~~~~~-~~~~~~~~~V~sv~fspd 158 (420)
T 4gga_A 104 NDYYLNLVDWSSGN-VL-AVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKE 158 (420)
T ss_dssp CCTTCBCEEECTTS-EE-EEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTT
T ss_pred ccccceeEEECCCC-EE-EEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCcEEEEEECCC
Confidence 34456778999764 44 45568999998865 3332221 122237888999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITG 907 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~ 907 (1113)
|++|++|+ ||+|++||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||... ...+..+.+|...+..
T Consensus 159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~ 235 (420)
T 4gga_A 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235 (420)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceee
Confidence 99999999 9999999999999999999999999988875 47999999999999999886 4556788999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE-EEE---cCCeEEEEeCCcc
Q 001258 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF-LVV---HETQLAIFETTKL 983 (1113)
Q Consensus 908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l-~~~---~d~~v~v~d~~~~ 983 (1113)
+.|+++++++++++.|+.|++|++.+++.... .......+. ..|..++|+|++..+ +++ .|+.|++||+.++
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 99999999999999999999999988654322 122223333 478999999976644 442 6899999999999
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEe--CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
++...+.. ...+.++.|+++++.+++++ .|+.|+|||+.+++.+..+. ||.+.|.. ++|+| ||.+
T Consensus 312 ~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~--l~~sp-dg~~ 378 (420)
T 4gga_A 312 ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLS--LTMSP-DGAT 378 (420)
T ss_dssp EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEE--EEECT-TSSC
T ss_pred ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CCCCCEEE--EEEcC-CCCE
Confidence 99888753 56899999999999988765 79999999999999999887 99999985 88999 7899
Q ss_pred EEEEeCCCcEEEEeccCCC
Q 001258 1062 FALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1062 l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
|+||+.||+|+|||+.+.+
T Consensus 379 l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 379 VASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTEEEEECCSCSS
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999998755
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=9.1e-32 Score=296.63 Aligned_cols=254 Identities=16% Similarity=0.199 Sum_probs=202.3
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1113)
+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++.... ..+.+|.+.|++++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence 59999999999999995 99999999999999987753211 14779999999999987 489
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCce---eeEeecc
Q 001258 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH 508 (1113)
Q Consensus 434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h 508 (1113)
+|++|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999987422 23367899999999999998 56 799999999999999987632 3556789
Q ss_pred CcCEEEEeeeecC---------------CceEEEEEecCCcEEEEEcCCCC---CeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 509 EAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 509 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
...|.+++|++.. ++.+|++|+.|+.|++||++... ....+..|...|.+++|+|++.
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~---- 225 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG---- 225 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS----
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC----
Confidence 9999999988752 14689999999999999997542 3345666777777777777652
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc----eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 646 (1113)
.++.+|++++.|++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+
T Consensus 226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 012469999999999999987631 12223333 45799999999999999999999999999
Q ss_pred cCC
Q 001258 647 TSD 649 (1113)
Q Consensus 647 ~~~ 649 (1113)
...
T Consensus 291 ~~~ 293 (316)
T 3bg1_A 291 ESV 293 (316)
T ss_dssp ECT
T ss_pred ECC
Confidence 753
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.7e-30 Score=289.11 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=180.0
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 491 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i 491 (1113)
++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|.+++|+| ++. +|++++.|++|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 67899999999999999999999999999999999976432 33446789999999999999 577 79999999999
Q ss_pred EEEeCCCC---------ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEc
Q 001258 492 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1113)
Q Consensus 492 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 562 (1113)
++||+.++ +++..+.+|...|.+++|++..++.++++++.||.|++||+++......+... ..+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence 99999887 55778889999999999987643679999999999999999887655433210 001111111
Q ss_pred cCCCeEEeccccCceeEEEecCC---CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC----CEEEE
Q 001258 563 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 635 (1113)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 635 (1113)
+. .+...+.+++|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 11 12335666777775 778999999999999988887764343334456689999999998 89999
Q ss_pred EECCCcEEEEEcCCC
Q 001258 636 STNDNGIKILATSDG 650 (1113)
Q Consensus 636 ~~~dg~i~iwd~~~~ 650 (1113)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999998765
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=279.56 Aligned_cols=283 Identities=17% Similarity=0.281 Sum_probs=231.7
Q ss_pred ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
....++||+++ +++++.|++|+|||+. +|+.+.. +...+|...|.+++|+|++++
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence 34678999886 4455669999998865 3333221 222348889999999999999
Q ss_pred EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeecccccCeEEEEE
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAF 910 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 910 (1113)
|++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..+.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999 9999999999999999999999888776654 579999999999999998875 556788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE---E-cCCeEEEEeCCcccee
Q 001258 911 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECV 986 (1113)
Q Consensus 911 s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~---~-~d~~v~v~d~~~~~~~ 986 (1113)
++++++|++++.|++|++||+.+++........ ...+. ..+..++++|++..++. + .++.|++||.......
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999999999999999999986543322221 22222 46889999998765443 2 6789999999988876
Q ss_pred eccccCCCCCCeeEEEECCCCCEEEEEe--CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258 987 KQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
... .|...+..++|++++..+++++ .|+.|+|||+.+++.+..+. +|.+.|+. ++|+| ||++|++
T Consensus 235 ~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~--l~~sp-dg~~l~S 301 (318)
T 4ggc_A 235 SAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLS--LTMSP-DGATVAS 301 (318)
T ss_dssp EEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEE--EEECT-TSSCEEE
T ss_pred ccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCCEEE--EEEcC-CCCEEEE
Confidence 665 3577899999999999988765 79999999999999999887 99999985 88999 7899999
Q ss_pred EeCCCcEEEEeccCCC
Q 001258 1065 GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1065 ~~~Dg~v~vW~~~~~~ 1080 (1113)
|+.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.5e-30 Score=285.41 Aligned_cols=294 Identities=13% Similarity=0.106 Sum_probs=230.1
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw 494 (1113)
+..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 45689999999999999999999999999999999988732233356689999999999999882 38899999999999
Q ss_pred eC-CCCceeeEeec--cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC---------CCCeeeeeCCCCceEEEEEc
Q 001258 495 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 562 (1113)
Q Consensus 495 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s 562 (1113)
|+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ ......+. +...+.++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--- 156 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM--- 156 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE---
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE---
Confidence 99 77754 77888 999999999987 46999999999999999986 44333333 34444444
Q ss_pred cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCC
Q 001258 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 640 (1113)
Q Consensus 563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 640 (1113)
+|+|++ +++++.++.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 157 ------------------~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 157 ------------------DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp ------------------EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred ------------------EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 444444 88999999999999988 55432222223345789999999 999999999999
Q ss_pred cEEEEEcCCC-----ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258 641 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1113)
Q Consensus 641 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1113)
.|++|++... ......+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 9999998654 011111110000
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeee
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1113)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001258 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 873 (1113)
Q Consensus 796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~ 873 (1113)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEecCCc-EEEEE
Q 001258 874 IIAIGMDDSS-IQIYN 888 (1113)
Q Consensus 874 ~la~g~~dg~-v~iwd 888 (1113)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44444
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=7.6e-30 Score=288.96 Aligned_cols=300 Identities=16% Similarity=0.167 Sum_probs=234.4
Q ss_pred cccCCCcceEEEEEcCC---CCeEEEEeCCCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258 415 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~ 490 (1113)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 57899999999999999 69999999999999999997 44332 36778999999999999999 7999999999
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
|++||+.+++.+. +.+|...|.+++|++.+++.+|++++.||.|++||+++......+..+. .+.++.+.
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-------- 179 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-------- 179 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence 9999999988766 5669999999999777888999999999999999999877776665543 23333322
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCE----EEEEECCCcEEEEE
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 646 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd 646 (1113)
...+++++.++.+++|++.................+.++++.++... +++++.||.|++|+
T Consensus 180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 23588899999999999988765544433333335566776665544 99999999999999
Q ss_pred cCCCcc--ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCC
Q 001258 647 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1113)
Q Consensus 647 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1113)
+..... ....+.+|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 263 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSN------------------------------------------------------------- 263 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence 876521 11111111000
Q ss_pred ceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCC
Q 001258 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1113)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~ 804 (1113)
+. .
T Consensus 264 --------------------------------------~~--~------------------------------------- 266 (368)
T 3mmy_A 264 --------------------------------------GT--N------------------------------------- 266 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------cc--c-------------------------------------
Confidence 00 0
Q ss_pred ccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc
Q 001258 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 883 (1113)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~ 883 (1113)
.....|...|.+++|+|++++|++++ ||.|++||+.+++++..+..|...|.+++|+| ++++|++|+.|+.
T Consensus 267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 00001556789999999999999998 89999999999999999999999999999999 8999999999886
Q ss_pred EEEEEc
Q 001258 884 IQIYNV 889 (1113)
Q Consensus 884 v~iwd~ 889 (1113)
.+.|++
T Consensus 339 ~~~~~~ 344 (368)
T 3mmy_A 339 SKGHEF 344 (368)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 555544
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.9e-30 Score=286.67 Aligned_cols=245 Identities=9% Similarity=0.011 Sum_probs=202.9
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-e
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 434 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 434 (1113)
.|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 49999999999999995 89999999999999988762110 002457899999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeeeeec--ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---------Ccee
Q 001258 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 502 (1113)
Q Consensus 435 las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~ 502 (1113)
|++|+.||.|++||+ .+++.. .+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 887642 5778 999999999999 77 799999999999999998 7777
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCe--eeeeCCCCceEEEEEccCCCeEEeccccCceeE
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 579 (1113)
..+. |...|.+++|++ + .+++++.|+.|++||+++ .... .....+...+.+++
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~------------------- 200 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA------------------- 200 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-------------------
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE-------------------
Confidence 7777 899999999864 3 299999999999999987 4432 22233344444444
Q ss_pred EEecC-CCCEEEEEecCCcEEEEECCCC------ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 580 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 580 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
|+| +++++++++.||.|++|+++.. +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 201 --~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 201 --LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp --ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred --ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 555 5557999999999999999887 77777776632 3379999999999999999999999999
Q ss_pred EcCCC
Q 001258 646 ATSDG 650 (1113)
Q Consensus 646 d~~~~ 650 (1113)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.5e-29 Score=293.27 Aligned_cols=233 Identities=20% Similarity=0.337 Sum_probs=204.6
Q ss_pred cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1113)
+|...|+|++| +|++ +++|+.||.|++||+.+++.+. .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999888 7884 9999999999999999988765 47789999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee---eEeeccCcCE
Q 001258 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 512 (1113)
Q Consensus 436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v 512 (1113)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|++|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998765 6889999999999974 4 6999999999999999988766 6778999999
Q ss_pred EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1113)
.+++| ++.++++|+.||.|++||+++......+..+...+.++.+. ++++++|
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99997 34699999999999999999988888888777777777663 2369999
Q ss_pred ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.||.|++||+.+++.+..+..| ...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999998866 447889988 7899999999999999998655
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.5e-29 Score=293.11 Aligned_cols=194 Identities=15% Similarity=0.295 Sum_probs=166.9
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001258 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1113)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~ 496 (1113)
.+|...|.+++| ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457778999887 89999999999999999999988665 68899999999999 667 7999999999999999
Q ss_pred CCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
.+++++..+.+|...|.+++|+ + .++++|+.||.|++||+.+.... ..+..+...|.++++
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------------ 264 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------ 264 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE------------
T ss_pred CCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe------------
Confidence 9999999999999999999975 2 48999999999999999886654 344555555655555
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+++++++++.||.|++||+.+++.+..+..+ ...|.+++| +++++++|+.||.|++||+.++
T Consensus 265 -----------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 -----------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp -----------ETTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred -----------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 3347999999999999999999999998866 446888888 5789999999999999998776
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.7e-30 Score=289.46 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=208.9
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCC--cceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1113)
-+|.+.|++++|+|+|++ |++|+.||.|+|||+.. ++.+. .+.+|.+.|++++|+|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp EECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCC
Confidence 359999999999999995 99999999999999984 33332 47789999999999987
Q ss_pred -CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEee
Q 001258 432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE 506 (1113)
Q Consensus 432 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~ 506 (1113)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEec
Confidence 999999999999999999998622 33367789999999999999 78 79999999999999999874 345677
Q ss_pred ccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEec
Q 001258 507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
+|...|.+++|++.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----- 219 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 219 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----
Confidence 899999999998742 5689999999999999999876543 23445556666666666510
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
.+.+|++++.||.|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++|++.
T Consensus 220 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 220 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 03479999999999999998865 33333443455679999999999999999999999999987
Q ss_pred CC
Q 001258 649 DG 650 (1113)
Q Consensus 649 ~~ 650 (1113)
.+
T Consensus 287 ~~ 288 (379)
T 3jrp_A 287 LE 288 (379)
T ss_dssp ET
T ss_pred CC
Confidence 65
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=285.98 Aligned_cols=256 Identities=17% Similarity=0.203 Sum_probs=201.5
Q ss_pred CcceeEecc-CCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCC-cceeEeeeeeeeccCCCCcccccccccCCCcc
Q 001258 348 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1113)
Q Consensus 348 ~~~~~~~~~-h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 422 (1113)
+.+....+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+.. .+.+|.+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 344445554 9999999999999 47 599999999999999997 444322 46789999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE--cCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA 500 (1113)
Q Consensus 423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~~~~~~~l~s~s~d~~i~iwd~~~~~ 500 (1113)
|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+++++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987654 5679999999999 88888 79999999999999999999
Q ss_pred eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCcee
Q 001258 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1113)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 578 (1113)
++..+..|. .+.++.+. . ..+++++.++.+++|+++......... .....+..+.+.++...
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN----------- 226 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence 999998765 56666543 3 378889999999999998754433221 11223333333332220
Q ss_pred EEEecCCCCEEEEEecCCcEEEEECCCC---ceEEEEccCCCC----------CCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1113)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iw 645 (1113)
....+++++.||.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++|
T Consensus 227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 0112899999999999999887 456666555321 158999999999999999999999999
Q ss_pred EcCCC
Q 001258 646 ATSDG 650 (1113)
Q Consensus 646 d~~~~ 650 (1113)
|+.++
T Consensus 301 d~~~~ 305 (368)
T 3mmy_A 301 DKDAR 305 (368)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99876
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.8e-30 Score=294.21 Aligned_cols=253 Identities=15% Similarity=0.232 Sum_probs=201.9
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 437 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 437 (1113)
.....++++|+...++++|+.||.|+||++....... .....+.+|.+.|++++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 3456789999988767778999999999996543321 01124789999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCcee----eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe--eccCcC
Q 001258 438 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 511 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~ 511 (1113)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|++||+.+++++..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223368899999999999999843 7999999999999999999999999 889999
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-eCCCCc-eEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
|.+++|++ ++.+|++++.||.|++||+++......+ ..+... +..+.|+|+ +.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l 235 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE---------------------GKIL 235 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST---------------------TEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC---------------------CcEE
Confidence 99999876 5579999999999999999987666555 344332 455555554 4467
Q ss_pred EEE---ecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEcCCCc
Q 001258 590 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGI 651 (1113)
Q Consensus 590 ~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~ 651 (1113)
++| +.|+.|++||+.+++. +..... .+...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 888 6899999999988764 333322 233568999999999999754 479999999998773
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.1e-29 Score=282.95 Aligned_cols=260 Identities=10% Similarity=0.130 Sum_probs=210.7
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--C
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1113)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+.++...... ...+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence 3469999999999999995 999999999999999876432110 114678999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCce------eeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
+++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999988632 1334468899999999999999 88 79999999999999999988765
Q ss_pred Eee-------------ccCcCEEEEeeeec-CCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCe
Q 001258 504 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 504 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 543 68889999998875 1347999999999998888776554 3345566667777777776520
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC-----------------------------------------
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 606 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 606 (1113)
.+++|++++.||.|++||+.++
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0036999999999999999765
Q ss_pred -----ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 607 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 607 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 445555544 557999999999999999999999999999887
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.2e-29 Score=291.33 Aligned_cols=303 Identities=12% Similarity=0.126 Sum_probs=223.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCC----------
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE---------- 818 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~---------- 818 (1113)
+...|.+++|+|+|++|++++.||.|+||++.......... .+. .....+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~--h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------RGEYNVYSTFQS--HEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-------------CCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------ccceeEeccccc--cccccccccccc
Confidence 67899999999999999999999999999987543210000 000 00111222 55
Q ss_pred --CCccEEEEecCC--CEEEEEe-CCeEEEEECCCCcee---------------------------------------ee
Q 001258 819 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 854 (1113)
Q Consensus 819 --~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~ 854 (1113)
..|.+++|+|++ .+|++++ |++|++||+.++... +.
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764431 12
Q ss_pred -ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeee-------eecccccCeEEEEEcCCC-CEEEEEeCCC
Q 001258 855 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 924 (1113)
Q Consensus 855 -~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~L~s~s~D~ 924 (1113)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ ++|++++.|+
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999998 799999999984 44444 367899999999999998 9999999999
Q ss_pred cEEEEeCCCCccccccccccCCCCCCC---------CCCCceEEEccCCcEEEEEcCCeEEEEeCCc-cceeeccccCCC
Q 001258 925 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 994 (1113)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~-~~~~~~~~~~~h 994 (1113)
+|++||+.+++.... ......++... ...|.+++|+|+|++|+++.++.|++||+.+ ++.+..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998654211 11222222210 0168999999999999997559999999997 77777766 44
Q ss_pred CCC---------------eeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcc---------------------
Q 001258 995 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY--------------------- 1038 (1113)
Q Consensus 995 ~~~---------------v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~--------------------- 1038 (1113)
... +..++|+|++++|++|+.||.|++||+.+++.+........
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 33499999999999999999999999999887632111000
Q ss_pred ----cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258 1039 ----LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus 1039 ----~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
....+...|. .++|+| ++++||+++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~~i~--~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKIL--HTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCC--EEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCcee--EEEECC-CCCEEEEEecce-eeeecc
Confidence 0001223344 599999 788999988776 777763
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=280.77 Aligned_cols=223 Identities=16% Similarity=0.277 Sum_probs=180.9
Q ss_pred cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 492 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~ 492 (1113)
++.+|.+.|++++|+|++++||+|+.||.|+|||+..+.. .....+.+|...|++++|+++ +. +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 5789999999999999999999999999999999984332 233478899999999999987 77 899999999999
Q ss_pred EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
+||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+..... ...+..+...|.+++|+|.....
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 777888899999999998764367999999999999999988643 34556677778888887753210
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCC---CCEEEEEECCCc
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKD---GCLLAVSTNDNG 641 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~ 641 (1113)
. ......+++.++++++.|+.|++||+.++.. ...+..| ...|.+++|+|+ +++|++++.||.
T Consensus 163 ~--------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 163 D--------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp ---------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred c--------ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 0 0111234567899999999999999987653 3444444 557999999999 899999999999
Q ss_pred EEEEEcCCC
Q 001258 642 IKILATSDG 650 (1113)
Q Consensus 642 i~iwd~~~~ 650 (1113)
|++||+.++
T Consensus 233 i~iwd~~~~ 241 (379)
T 3jrp_A 233 CIIWTQDNE 241 (379)
T ss_dssp EEEEEESST
T ss_pred EEEEeCCCC
Confidence 999998776
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.3e-29 Score=284.87 Aligned_cols=288 Identities=15% Similarity=0.127 Sum_probs=227.4
Q ss_pred EEEEEeCCCceEEE-eecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCE
Q 001258 755 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 832 (1113)
Q Consensus 755 ~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~ 832 (1113)
..++++|+...+++ ++.+|.|+||++....... . ....+. +|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCE
Confidence 35778888766554 6778999999985321100 0 000122 3899999999999 9999
Q ss_pred EEEEe-CCeEEEEECCCC-------ceeeeecCCCCCeeEEEEecCCC-cEEEEEecCCcEEEEEcccceeeeee--ccc
Q 001258 833 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 901 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h 901 (1113)
|++++ ||+|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 899999999987 56788899999999999999 55 79999999999999999999999999 899
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE----cCCeEEE
Q 001258 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI 977 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v 977 (1113)
.+.|++++|+|++++|++++.|+.|++||+.+++.... ...++.. ..+..++|+|++.+++++ .|+.|++
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE----KDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE----EECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeee----eccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 99999999999999999999999999999998654221 1123322 247899999999999997 6899999
Q ss_pred EeCCccceeeccccCCCCCCeeEEEECCCCCEEEE-EeCCCcEEEEecCCCce-eeecCCCcccCCCcccCccceEEEEe
Q 001258 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSNVHPLVIAAH 1055 (1113)
Q Consensus 978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~Dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~v~~i~~~~~ 1055 (1113)
||+.+++.........|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+. .+ .|...|. .++|+
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~--~~---~~~~~v~--~~~~s 322 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS--MF---SSKESQR--GMGYM 322 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE--EE---CCSSCCS--EEEEC
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec--cc---ccCCccc--ceEEe
Confidence 99998775322222356788999999999999875 55799999999999874 43333 00 2345666 48899
Q ss_pred CCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1056 PQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1056 p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
| ++.++++ .|+.+++|++.+++
T Consensus 323 p-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 323 P-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp C-GGGSCGG--GTEEEEEEEEETTE
T ss_pred c-cccccee--cceeEEEEEcCCCc
Confidence 9 6677664 57899999999876
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.4e-28 Score=282.16 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=212.7
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
....+.|.+.|++++|+|++..+|++|+.+|.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 3566779999999999998555799999999999999976211000 0000001114678999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---cee
Q 001258 431 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 502 (1113)
Q Consensus 431 dg~-~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~ 502 (1113)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223467789999999999995444 7999999999999999987 577
Q ss_pred eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
..+..|...|++++|++... .++++|+.||.|++||+++. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999887542 47999999999999999984 45566777777788777777764
Q ss_pred ecCCCCEEEEEecCCcEEEEECCC--------------CceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEE
Q 001258 582 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 646 (1113)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd 646 (1113)
..+++++.|+.|++||+.. .+.+..+..| ...|.+++|+|++. ++++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2588999999999999976 2445555444 45799999999999 999999999999999
Q ss_pred cCCC
Q 001258 647 TSDG 650 (1113)
Q Consensus 647 ~~~~ 650 (1113)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8654
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.8e-27 Score=272.53 Aligned_cols=320 Identities=15% Similarity=0.186 Sum_probs=239.3
Q ss_pred ceEEEE---EcCCCCeEEEE--------------eCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCCCCeeEE
Q 001258 422 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1113)
Q Consensus 422 ~V~~l~---~spdg~~las~--------------~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l 482 (1113)
.+..++ |+|+++.++.. +.++.+.||.+. ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455666 66666655543 233433555543 342 2223344444 4567999999655 78
Q ss_pred EEecCCCcEEEEeCCCCceee-----EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceE
Q 001258 483 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 557 (1113)
Q Consensus 483 ~s~s~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 557 (1113)
++++.|+.|++||+.+++.+. .+.+|...|.+++|+ +++.++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888899999999999998887 345788999999985 4558999999999999999998777777776777777
Q ss_pred EEEEccCCCeEEeccccCceeEEEecCCCCEE-EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
+++|+|+++ .+ ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++++++
T Consensus 216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 777777665 45 445589999999999998888776543 48899999999999988
Q ss_pred E--------CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258 637 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1113)
Q Consensus 637 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1113)
+ .|+.|++||+.++ +....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~-~~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKE-KLIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTT-EEEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCC-cEEeec---------------------------------------------------
Confidence 7 3566667766544 110000
Q ss_pred cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1113)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1113)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecCCCCCeeEEE
Q 001258 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1113)
Q Consensus 789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 866 (1113)
.+...+.+++|+|+++.++++ + ++.|++||+.+++....+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 012235567788888765444 4 7899999999888877776 667799999
Q ss_pred EecCCCcEEEEEec---------------CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001258 867 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 930 (1113)
Q Consensus 867 ~s~~d~~~la~g~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd 930 (1113)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888876 579999999999988888764 57999999999999998875 99999999
Q ss_pred CCC
Q 001258 931 SDG 933 (1113)
Q Consensus 931 ~~~ 933 (1113)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-27 Score=277.32 Aligned_cols=262 Identities=15% Similarity=0.060 Sum_probs=202.3
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc---eeEeeeeeee---ccCC------------C-------------
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA------------C------------- 407 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~------------~------------- 407 (1113)
.++.+++|+|||+ +|+++ .++.|.+||+.+|+ .+.......- .... .
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 5789999999999 46655 57899999999998 4432111000 0000 0
Q ss_pred -------CcccccccccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCCC
Q 001258 408 -------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPN 477 (1113)
Q Consensus 408 -------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~ 477 (1113)
..........+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+..+ ....|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCCC
Confidence 0000111234677789999999999996 889999999999999 77766532 113677899999999999
Q ss_pred CeeEEEEecCCCcEEEEeCCCCceee----EeeccCcCEEEEeeeec-CCceEEEEEecCCcEEEEEcCCCCCeee-eeC
Q 001258 478 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA 551 (1113)
Q Consensus 478 ~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~ 551 (1113)
+ +|++++.|+.|++|++.++.... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...... +..
T Consensus 162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9 79999999999999999887554 78899999999999876 2257999999999999999998776665 446
Q ss_pred CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC----------------
Q 001258 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------------- 615 (1113)
Q Consensus 552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------- 615 (1113)
|...|.+++|+ ++. +|++++.|+.|++||+.+++++..+..+
T Consensus 240 h~~~v~~~~~s-d~~---------------------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 240 HKHFVSSICCG-KDY---------------------LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp CSSCEEEEEEC-STT---------------------EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred CCCceEEEEEC-CCC---------------------EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence 66667777766 555 7999999999999999999988887532
Q ss_pred -------CCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEc
Q 001258 616 -------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 647 (1113)
Q Consensus 616 -------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 647 (1113)
.....|.+++|+|++++|++++ .++.|++|++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999999 8999999998
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-26 Score=264.31 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=180.3
Q ss_pred CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEc
Q 001258 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 449 (1113)
Q Consensus 371 ~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 449 (1113)
++++++++.|+.|++||+.+++.+.. +.+|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887653 44454 58999999999987 56678999999999
Q ss_pred cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEE-EE
Q 001258 450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 528 (1113)
Q Consensus 450 ~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 528 (1113)
.+++.+. .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+++ ++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence 9988765 444444 8999999999995 4466778899999999999998888754 56888887654 4555 78
Q ss_pred EecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE-EEEecCCcEEEEECCCCc
Q 001258 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 607 (1113)
Q Consensus 529 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 607 (1113)
++.|+.|++||+.+.+....+..+ ..+..++|+|+++ ++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~---------------------~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT---------------------KVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS---------------------EEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCC---------------------EEEEEeCCCCEEEEEECCCCe
Confidence 888999999999886655555433 2345555555554 55 567789999999999998
Q ss_pred eEEEEccCCCCCCcCeEEECCCCCEEEEEE---CCCcEEEEEcCCC
Q 001258 608 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 650 (1113)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~ 650 (1113)
.+..+..+ ..+.+++|+|+++++++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 88877643 3578999999999999888 6899999998766
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.4e-27 Score=248.11 Aligned_cols=293 Identities=15% Similarity=0.146 Sum_probs=209.4
Q ss_pred eeEEEEc-CCCCeeEEEEecCCCcEEEEeCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC
Q 001258 468 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 543 (1113)
Q Consensus 468 V~~v~~s-~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 543 (1113)
+.++-|- +..+...+++++ ..+|++|+..++ ++++++.+|..+|..+.+.++..+-+.++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5556663 344555677777 469999999999 8999999999999999987755432222221
Q ss_pred CCeeeeeCCCCceEEEEEccC----CCeEEeccccCceeEEEecCCCCEEEEEe--cCCcEEEEEC-CCCceEEEEccCC
Q 001258 544 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG 616 (1113)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~ 616 (1113)
..+...|.+++++|+ ++.+..+.+... +..+ ++++.+.+++ .|+.|++|++ .+++.+..+..+.
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~--v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGNIKA--VLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEEEEE--EEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ------cccccceEEEEECCCccccccEEEeCCCeEE--EEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 123446889999999 777777665433 3444 5555555533 5999999999 5588888877774
Q ss_pred CCCCcCeEEECC---CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258 617 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1113)
Q Consensus 617 ~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1113)
..+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 179 --~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------- 224 (356)
T 2w18_A 179 --PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------- 224 (356)
T ss_dssp --CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred --CceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence 4688899999 7899999999999999999998 56665543211
Q ss_pred ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1113)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 773 (1113)
+...+.+++|+|+|..+++++.+.
T Consensus 225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence 223567889999998777665431
Q ss_pred eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee
Q 001258 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 852 (1113)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~ 852 (1113)
. + ..+++|+ |++|++||..+++.+
T Consensus 249 ~--~-----------------------------------------------------w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 249 A--K-----------------------------------------------------ESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred C--c-----------------------------------------------------ceeeccCCCcEEEEEECCCCEEE
Confidence 1 1 1356677 899999999999887
Q ss_pred eee-----cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcE
Q 001258 853 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL 926 (1113)
Q Consensus 853 ~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v 926 (1113)
..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|.+.+. .++|+|||++|++|+.|++|
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 665 356555443333 367999999999999999999999999999988766 58999999999999999999
Q ss_pred EEEeC
Q 001258 927 CVWSS 931 (1113)
Q Consensus 927 ~iwd~ 931 (1113)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99996
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=301.14 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=207.1
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1113)
-+|.+.|++++|+|+|++ |++|+.||.|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~ 65 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTT
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCC
Confidence 359999999999999995 999999999999999843 3322 47899999999999998
Q ss_pred -CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEee
Q 001258 432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE 506 (1113)
Q Consensus 432 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~ 506 (1113)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||+|++||+.++. ....+.
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~ 142 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID 142 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEee
Confidence 99999999999999999999862 233367889999999999999 88 79999999999999998873 445678
Q ss_pred ccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEec
Q 001258 507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
+|...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----- 217 (753)
T 3jro_A 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 217 (753)
T ss_dssp CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-----
Confidence 899999999998741 4679999999999999999876432 24455556666666665510
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE---EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
.++++++++.||.|++||+.++... .......+...|.+++|+|+++++++++.||.|++|++.
T Consensus 218 -------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 218 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp -------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred -------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 0347999999999999999886421 112223345679999999999999999999999999998
Q ss_pred CC
Q 001258 649 DG 650 (1113)
Q Consensus 649 ~~ 650 (1113)
++
T Consensus 285 ~~ 286 (753)
T 3jro_A 285 LE 286 (753)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-26 Score=264.41 Aligned_cols=329 Identities=9% Similarity=0.097 Sum_probs=242.0
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1113)
.++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.|++|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888999999999999988665 555554 5899999999994 45788899999999999999998888655 89
Q ss_pred EEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE-E
Q 001258 513 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 590 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 590 (1113)
.+++|+++ +.+| ++++.++.|++||+.+++....+..+ ..+.+++|+|+++ ++ +
T Consensus 77 ~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~---------------------~l~~ 132 (391)
T 1l0q_A 77 QGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK---------------------KLYV 132 (391)
T ss_dssp EEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS---------------------EEEE
T ss_pred cceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCC---------------------EEEE
Confidence 99998754 4555 55667899999999986655544432 2345555555554 55 6
Q ss_pred EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1113)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77889999999999999888887543 46899999999887 56677899999998665 1111000
Q ss_pred CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1113)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1113)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223455667777
Q ss_pred CCEEEEEe----CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEecCCcEEEEEcccceeeeeecccccC
Q 001258 830 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1113)
Q Consensus 830 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1113)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 77666654 5789999998888888877654 578999999 77666 67788999999999999998888776554
Q ss_pred eE---EEEEcC------------CC----------CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258 905 IT---GLAFSH------------AL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1113)
Q Consensus 905 V~---~l~~s~------------d~----------~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 959 (1113)
.. .+.+.| +. ..+...+.|.++++|++..+.... . ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------K--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------S--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC------c--------CCCeEE
Confidence 21 122222 11 345666778999999998754210 0 123467
Q ss_pred EccCCcEEEE
Q 001258 960 FHQDQIHFLV 969 (1113)
Q Consensus 960 ~spdg~~l~~ 969 (1113)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 8999998875
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.8e-28 Score=274.35 Aligned_cols=251 Identities=13% Similarity=0.090 Sum_probs=156.6
Q ss_pred cCCCCcEEEEE---cCCCCeEEEEEecCCcEEEEecCCccee-----EeeeeeeeccCCCCc-----ccccccccCCCcc
Q 001258 356 NQGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRERL-----VLRNFKVWDLGACSM-----PLQAALVKDPGVS 422 (1113)
Q Consensus 356 ~h~~~V~~~~~---spdg~~ll~~gs~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~ 422 (1113)
.-.....++.| +|++..++++| .++.|.+|+....... .......++...... +........|...
T Consensus 13 pl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD 91 (393)
T ss_dssp CTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred cCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence 33455677777 45566556665 5888999986432111 111111121111000 0111123455666
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee--eeeeeecccCCeeEEEEcC--------CCCeeEEEEecCCCcEE
Q 001258 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIK 492 (1113)
Q Consensus 423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------~~~~~~l~s~s~d~~i~ 492 (1113)
+....+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++|+|+| |++ +|+|||.|++|+
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~ 169 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLI 169 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEE
Confidence 6667777788999999999999999999887543 2345789999999999998 777 899999999999
Q ss_pred EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1113)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 572 (1113)
|||+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.+.........+.......
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------------- 235 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------------- 235 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC-------------
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce-------------
Confidence 99999999988888999999999998643 2589999999999999998866544332221111000
Q ss_pred ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCC
Q 001258 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
.++...... .......++...+.++.|+ ++++.+++++.|+++++||+..+
T Consensus 236 ----------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 236 ----------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp ----------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred ----------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 011110000 0011111334568899987 79999999999999999998776
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.1e-27 Score=262.42 Aligned_cols=298 Identities=14% Similarity=0.201 Sum_probs=209.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
..+|.+.|++++|||||++||+|+.++ ++|||+.+++... . .+...+..+++.+++.. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998776 7899998765443 2 22335888999998884 446788899999999
Q ss_pred CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
+.+++++..+. |...|.++++++ + .++.+ .|+.|++||+.+. +....+.. ....
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~---------------- 142 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGV---------------- 142 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE----------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCce----------------
Confidence 99999999887 677999999754 2 34433 4889999999886 44433322 1222
Q ss_pred CceeEEEecCCCCEEEE--EecCCcEEEEECCCCc----------------eEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258 575 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
+++++ .++++ |+.+|.|++||+.++. .+..+..| ...|.+++|+|+|++|+++
T Consensus 143 -----~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 143 -----CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp -----EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred -----EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence 22333 34555 5789999999998865 25666655 5589999999999999999
Q ss_pred ECCCc-EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258 637 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1113)
Q Consensus 637 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1113)
+.|++ |++||+.++ +.+..+..
T Consensus 214 s~d~~~v~iwd~~~~-~~~~~~~~-------------------------------------------------------- 236 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG-VLVREFRR-------------------------------------------------------- 236 (355)
T ss_dssp ETTCSEEEEEETTTC-CEEEEEEC--------------------------------------------------------
T ss_pred eCCCCEEEEEECCCC-cEEEEEEc--------------------------------------------------------
Confidence 99998 999999877 33332210
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCce----
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA---- 791 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---- 791 (1113)
..|...|.+++|+|++++|++++.|+.+++|++...........
T Consensus 237 --------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 237 --------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp --------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred --------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 01567899999999999999999999999999976432111100
Q ss_pred eeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCC
Q 001258 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 849 (1113)
Q Consensus 792 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~ 849 (1113)
.....-..|.... ..+. .........++|++++++|++++ ||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCN-----FKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEE-----EECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeE-----EEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000000111100 0011 01233457799999999999998 999999998653
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.5e-28 Score=276.73 Aligned_cols=266 Identities=10% Similarity=-0.019 Sum_probs=186.4
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC------
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP------ 430 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp------ 430 (1113)
|...+....+++++. +|++|+.|++|+|||..+++......+ ..+.||.+.|++++|+|
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTTC
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccccccc
Confidence 555555556666666 699999999999999998876543221 15789999999999998
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---
Q 001258 431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 505 (1113)
Q Consensus 431 --dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--- 505 (1113)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++.....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999999877554 56789999999999999865 7999999999999999887654322
Q ss_pred ----------------------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEcc
Q 001258 506 ----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563 (1113)
Q Consensus 506 ----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 563 (1113)
.+|...|.++.|. .+++..|++++.|+.+++||+........+..+...+..+.+.+
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 3577788888875 35678999999999999999998877777777777778888887
Q ss_pred CCCeEEeccccCceeEEEecCCCC-EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcE
Q 001258 564 DGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1113)
Q Consensus 564 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 642 (1113)
+++... .....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+. ..|.+++|+|||++||+++.+| +
T Consensus 308 ~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 308 NVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp SEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-E
T ss_pred cccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-e
Confidence 764321 1122233333444444 55667889999999999998887776554 4799999999999999998765 5
Q ss_pred EEEEc
Q 001258 643 KILAT 647 (1113)
Q Consensus 643 ~iwd~ 647 (1113)
.+|.+
T Consensus 383 ~lvrL 387 (393)
T 4gq1_A 383 LLTRL 387 (393)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.9e-27 Score=247.16 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=171.6
Q ss_pred ccCceEEEEEeCC----CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258 750 RATKISRLIFTNS----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1113)
Q Consensus 750 ~~~~i~~~~~s~~----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~ 825 (1113)
+...|.+++++|+ ++.++.++.+ +.+|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 3457889999999 8888887744 556642
Q ss_pred EecCCCEEEEEe---CCeEEEEEC-CCCceeeeecCCCCCeeEEEEec--CCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 826 LSKNDSYVMSAS---GGKISLFNM-MTFKTMATFMPPPPAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 826 ~s~~~~~l~~~s---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
++++.+.++. |++|++|++ .+++.+..+.+|...++.++|++ .++.+||+|+.|++|+|||+.+++++.++.
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 3556666653 889999999 45888888888999898888887 357999999999999999999999999998
Q ss_pred ccc---cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEE
Q 001258 900 GHS---KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 976 (1113)
Q Consensus 900 ~h~---~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~ 976 (1113)
+|. ..+.+++|+|||.++++++.+.. +|++.++ +.|++++
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~laSG-----------------------------------s~D~tIk 263 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCA--KESESLR-----------------------------------SPVFQLI 263 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC-------------------------------------------------CCEEEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCC--cceeecc-----------------------------------CCCcEEE
Confidence 754 46778899999999987775443 3544331 2466777
Q ss_pred EEeCCccceeeccc---cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEE
Q 001258 977 IFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA 1053 (1113)
Q Consensus 977 v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~ 1053 (1113)
+||..+++++..+. +.+|...+.+..++ +.++++++.|++|+|||+.+++.+..+. +|...+.. .++
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs-~va 333 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS-FVK 333 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC-EEE
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE-EEE
Confidence 88887777665442 34666555555544 8899999999999999999999999987 77766553 478
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1054 AHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1054 ~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
|+| ||++|++|+.|++|+|||+.
T Consensus 334 fSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 334 WSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp ECS-SSSEEEEECTTSCEEEEEEC
T ss_pred ECC-CCCEEEEEECCCcEEEecCC
Confidence 999 78999999999999999963
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.1e-26 Score=260.20 Aligned_cols=236 Identities=13% Similarity=0.116 Sum_probs=178.4
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
-.|.+.|++++|||||+ +|++|+.+| ++|||+.+++..... +...+..+++++++++
T Consensus 16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence 34999999999999999 488888665 789999887665421 1125888999999988
Q ss_pred EE-EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCE
Q 001258 435 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 512 (1113)
Q Consensus 435 la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v 512 (1113)
++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 85 56778999999999998766 444 67799999999864 3333 3789999999998 77777765 33
Q ss_pred EEEeeeecCCceEEEE--EecCCcEEEEEcCCCCC----------------eeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 513 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 513 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
..+++++ .+++. |+.||.|++||+.+... ...+..|...|.+++
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~-------------- 202 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-------------- 202 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE--------------
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE--------------
Confidence 3344444 24554 68899999999987541 334444555555544
Q ss_pred CceeEEEecCCCCEEEEEecCCc-EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
|+|++++|++++.|++ |++||+.+++++..+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 203 -------~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 203 -------LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp -------ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred -------ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 5555558999999998 99999999999999873223458999999999999999999999999999765
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.3e-26 Score=268.81 Aligned_cols=296 Identities=13% Similarity=0.115 Sum_probs=227.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeee--eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
..+.+++|+|++.++++++.|+.|++||+.+++...... .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 356699999988888888889999999999988664221 3458999999999999998 899999999999999999
Q ss_pred CceeeEeeccCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 499 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
++.+..+..|...+.+++|+++. ..+ ++++.|+.|++||+++++....+.. ...+.+++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------ 265 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG------------ 265 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC------------
Confidence 99999999999999999987644 455 5666899999999987655444433 2335555555555
Q ss_pred eEEEecCCCCEEEEEe--------cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcC
Q 001258 578 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 648 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 648 (1113)
+++++++ .|+.|++||+.+++.+..+... ..+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp ---------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred ---------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 4677766 4889999999999887776433 247889999999755 666889999999987
Q ss_pred CCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceee
Q 001258 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1113)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1113)
++ +....+.
T Consensus 334 ~~-~~~~~~~---------------------------------------------------------------------- 342 (433)
T 3bws_A 334 EK-KVQKSIP---------------------------------------------------------------------- 342 (433)
T ss_dssp TT-EEEEEEE----------------------------------------------------------------------
T ss_pred CC-cEEEEec----------------------------------------------------------------------
Confidence 66 2221110
Q ss_pred EeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc
Q 001258 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1113)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~ 808 (1113)
+...+.+++|+|+++.+++++.+..
T Consensus 343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 2345778999999988877765410
Q ss_pred ccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CCcEEE
Q 001258 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 886 (1113)
Q Consensus 809 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~i 886 (1113)
.+ +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 -----------~~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 -----------HP-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp -----------CT-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred -----------cc-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 00 223445555 89999999999998888875 45789999999 8888887775 999999
Q ss_pred EEccc
Q 001258 887 YNVRV 891 (1113)
Q Consensus 887 wd~~~ 891 (1113)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99863
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-27 Score=272.06 Aligned_cols=246 Identities=9% Similarity=0.042 Sum_probs=200.4
Q ss_pred CCCCccEEEEecCCCEE-EEEe-CCeEEEEECC--CCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258 817 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~ 890 (1113)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .+...|.+++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66689999999999996 7786 8999999999 888888876 5678899999999 89999999999999999998
Q ss_pred cceeee----eecccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 891 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 891 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++... ....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD----KWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----EECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----eeecCCC---CceEEEEEC-C
Confidence 877554 78899999999999999 9999999999999999998865321 1233444 479999999 9
Q ss_pred CcEEEE-EcCCeEEEEeCCccceeeccccC-----------------------CCCCCeeEEEECCCCCEEEEEe-CCCc
Q 001258 964 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1018 (1113)
Q Consensus 964 g~~l~~-~~d~~v~v~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~~-~Dg~ 1018 (1113)
+.+|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 58999999999999987776421 2245799999999999999999 8999
Q ss_pred EEEEec--CCC---ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC-------CCcEEEEeccCCCccc
Q 001258 1019 VCVFSA--ANL---KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1083 (1113)
Q Consensus 1019 v~vwd~--~~~---~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~ 1083 (1113)
|+||++ .++ +.+..+. +| +.|. +++|+| ++ ++++.+. +..|.+|.+....++|
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~-~~v~--~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP-YNVI--SLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS-SCEE--EEEEET-TE-EEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC-CceE--EEEecC-Cc-EEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 999999 555 5555554 44 4455 588998 44 5555433 5568999887665445
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-27 Score=262.83 Aligned_cols=280 Identities=8% Similarity=0.057 Sum_probs=214.5
Q ss_pred EEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC
Q 001258 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 551 (1113)
Q Consensus 472 ~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 551 (1113)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 4445666 79999999999999999999988887 466777776653 9999999999999765
Q ss_pred CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--C
Q 001258 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 629 (1113)
Q Consensus 552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 629 (1113)
+.+.+|+..+++.+..+... +...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEVD-SANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEECC-CSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCC
Confidence 24668888888877666532 234799999999 9
Q ss_pred CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcc
Q 001258 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 709 (1113)
Q Consensus 630 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1113)
++++++++.||.|++||+.++. .......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~-------------------------------------------------- 167 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDS-QYIVHSA-------------------------------------------------- 167 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSC-EEEEECC--------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCc-EEEEEec--------------------------------------------------
Confidence 9999999999999999998772 2221110
Q ss_pred ccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCC
Q 001258 710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789 (1113)
Q Consensus 710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 789 (1113)
.+...+.+++|+|++..+++++.||.|++||+...
T Consensus 168 ---------------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~------ 202 (343)
T 3lrv_A 168 ---------------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP------ 202 (343)
T ss_dssp ---------------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT------
T ss_pred ---------------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------
Confidence 13446889999999999999999999999987632
Q ss_pred ceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecC---CCCCee--E
Q 001258 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 864 (1113)
Q Consensus 790 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~ 864 (1113)
......+.. +|...|.+++|+|++.+|+++++++|++||+.+++.+..+.. |...+. +
T Consensus 203 ----------------~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 203 ----------------DQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ----------------TSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ----------------CCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 221001111 278999999999999999999988999999998887666543 333444 6
Q ss_pred EEEecCCCcEEEEEec-CCcEEEEEcccceeeeeecccccCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCC
Q 001258 865 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 865 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +.+.+++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 8999999998 999999999765433222 5678888988 889999999999999886443
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.8e-26 Score=266.51 Aligned_cols=212 Identities=19% Similarity=0.278 Sum_probs=174.3
Q ss_pred cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCC-------ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec
Q 001258 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486 (1113)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s 486 (1113)
...+|.+.|++++|+|+ +.+||+++.||.|+|||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 46689999999999997 789999999999999999872 112234478899999999999999885 699999
Q ss_pred CCCcEEEEeCCCCce-------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCce
Q 001258 487 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 556 (1113)
Q Consensus 487 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 556 (1113)
.||+|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4567789999999999874 3469999999999999999976 3444556666667
Q ss_pred EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECCCCC-EEE
Q 001258 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 634 (1113)
Q Consensus 557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 634 (1113)
.+++|+|++. ..+++|+.||.|++||+++ +..+..+..| ...|.+++|+|+++ +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence 7666666654 2488999999999999998 5667777765 45799999999884 799
Q ss_pred EEECCCcEEEEEcCCC
Q 001258 635 VSTNDNGIKILATSDG 650 (1113)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1113)
+++.|+.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998764
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-27 Score=264.11 Aligned_cols=234 Identities=12% Similarity=0.071 Sum_probs=177.6
Q ss_pred EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec--CCCEEEEEe-CCeEE
Q 001258 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKIS 842 (1113)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~ 842 (1113)
+++++.|+.+++|+... .+.+|+..++..+.....+ |...|.+++++| +++++++++ ||+|+
T Consensus 88 ~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGN-------------QITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp EEEECSTTEEEEEETTT-------------EEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred eEEecCCCeEEEEEccC-------------ceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 66666666666666542 2235666666644332222 678899999999 999999998 99999
Q ss_pred EEECCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eeecc-cccCeEEEEEcCCCCEEEE
Q 001258 843 LFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKG-HSKRITGLAFSHALNVLVS 919 (1113)
Q Consensus 843 vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~-h~~~V~~l~~s~d~~~L~s 919 (1113)
+||+.+++....... +...+++++|+| ++.+||+|+.||.|++||+.+++.+ ..+.+ |.+.|++++|+|++.+|++
T Consensus 153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp EEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred EEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence 999999988776643 455799999999 8999999999999999999999887 78888 9999999999999999999
Q ss_pred EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC--ceEEEccCCcEEEEE-c-CCeEEEEeCCccceeeccccCCCC
Q 001258 920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFLVV-H-ETQLAIFETTKLECVKQWVPRESS 995 (1113)
Q Consensus 920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~spdg~~l~~~-~-d~~v~v~d~~~~~~~~~~~~~~h~ 995 (1113)
++ |++|++||+.+.+.... +.....+. ..+ .+++|+|+|++|+++ . |+.+++|++.+.......
T Consensus 232 ~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------ 299 (343)
T 3lrv_A 232 EC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------ 299 (343)
T ss_dssp EE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------
T ss_pred Ee-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------
Confidence 99 45999999998654221 11111111 122 369999999999994 4 999999999766533221
Q ss_pred CCeeEEEECC---CCCEEEEEeCCCcEEEEecCCC
Q 001258 996 APITHATFSC---DSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 996 ~~v~~l~~s~---dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
.++..++|++ +.+.+++++.||.+.++-....
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 4678889998 8999999999999998865443
No 128
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-27 Score=292.50 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=210.9
Q ss_pred CCCCCccEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEecCCcEEEEEcc
Q 001258 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 890 (1113)
Q Consensus 816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d--~~~la~g~~dg~v~iwd~~ 890 (1113)
+|...|++++|+|++++|++|+ ||+|+|||+. +++....+.+|...|++++|+| + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 5677888999999999999998 5 8999999999999999999
Q ss_pred cce--eeeeecccccCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc----
Q 001258 891 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 962 (1113)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp---- 962 (1113)
+++ .+..+.+|...|++++|+|+ ++++++++.||+|++||+.++...... ...++. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---EeecCC---CceEEEEecCcccc
Confidence 886 77888999999999999999 999999999999999999886432222 222333 4789999999
Q ss_pred ---------CCcEEEE-EcCCeEEEEeCCccc----eeeccccCCCCCCeeEEEECCC---CCEEEEEeCCCcEEEEecC
Q 001258 963 ---------DQIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 963 ---------dg~~l~~-~~d~~v~v~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~vwd~~ 1025 (1113)
++.++++ +.|+.|++||+.++. ....+ .+|...|++++|+|+ +.+|++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 589999999998774 33333 378999999999999 8999999999999999999
Q ss_pred CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+++...... .....+|.+.|.. ++|+| +|.+|++|+.||.|++|++.++.
T Consensus 238 ~~~~~~~~~--~~~~~~~~~~v~~--l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKT--LLKEEKFPDVLWR--ASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCC--BSSSSCCSSCCCC--EEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeE--EeccCCCCCceEE--EEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 875322111 1112257777775 88899 78999999999999999999755
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.2e-25 Score=262.50 Aligned_cols=334 Identities=13% Similarity=0.147 Sum_probs=242.4
Q ss_pred EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc-CCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
+|+|++. ++++++.|++|.+||..+++.+.. +. +|. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889887 689999999999999999988763 23 443 889999999999999999999
Q ss_pred EEEEEc--cCCceeeeeeeeecccCCeeEEEEcC----CCCeeEEEEec-CCCcEEEEeCCCCceeeEeecc--------
Q 001258 444 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH-------- 508 (1113)
Q Consensus 444 i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h-------- 508 (1113)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7877655 454 455689999999 999 566666 5899999999999999888642
Q ss_pred --C-cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 509 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 509 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... .+. ....+.. +.|+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~---------------------~~~s 332 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD---------------------GGWD 332 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC---------------------EEEC
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC---------------------ceEC
Confidence 2 268888877643 3678888899999999998755433 111 2223333 4555
Q ss_pred CCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEE-ECCC-CCEEEEEE-CCCcEEEEEcCCCccceecccc
Q 001258 584 TTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN 659 (1113)
Q Consensus 584 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 659 (1113)
|++++++++ ..+++|.+||..+++++..+........-.... ++|+ +.+++++. .|++|.+|++.+..
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~-------- 404 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN-------- 404 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------
Confidence 555566655 468999999999999988886422111112233 4676 66666665 57899999986631
Q ss_pred ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1113)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1113)
|..
T Consensus 405 ~~~----------------------------------------------------------------------------- 407 (543)
T 1nir_A 405 HPQ----------------------------------------------------------------------------- 407 (543)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred Cch-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1113)
Q Consensus 740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 819 (1113)
+... .++. +.+ |..
T Consensus 408 ----------~~~~--------------------~v~~----------------------------------l~~--~g~ 421 (543)
T 1nir_A 408 ----------YAWK--------------------KVAE----------------------------------LQG--QGG 421 (543)
T ss_dssp ----------TBTS--------------------EEEE----------------------------------EEC--SCS
T ss_pred ----------hcCe--------------------EEEE----------------------------------EEc--CCC
Confidence 0000 0000 000 344
Q ss_pred CccEEEEecCCCEEEEEe--------CCeEEEEECCCCcee-eee--------cCCCCCeeEEEEecCCCcEEEEEe---
Q 001258 820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM--- 879 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~la~g~--- 879 (1113)
.+..++++|++++|+++. +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|.++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~ 500 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG 500 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence 566788888888888875 568999999988877 443 34567899999999 788777663
Q ss_pred --cCCcEEEEEcccceeeeeeccc
Q 001258 880 --DDSSIQIYNVRVDEVKSKLKGH 901 (1113)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~l~~h 901 (1113)
.|+.|.|||..+++++..++.+
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999988754
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6e-25 Score=258.82 Aligned_cols=333 Identities=11% Similarity=0.083 Sum_probs=244.0
Q ss_pred EcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEc--CCCCCeeeee
Q 001258 473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE 550 (1113)
Q Consensus 473 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 550 (1113)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+ ++|++|++++.|+.|.+||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788887 789999999999999999999999984333 7788765 56689999999999999999 6655444444
Q ss_pred CCCCceEEEEEcc----CCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCC--------
Q 001258 551 APGRWCTTMAYSA----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-------- 617 (1113)
Q Consensus 551 ~~~~~v~~~~~s~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------- 617 (1113)
.+..+..++|+| +|+ ++++++ .+++|.+||..+++++..+...+.
T Consensus 220 -~g~~p~~va~sp~~~~dg~---------------------~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDR---------------------YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTT---------------------EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred -cCCCcceEEeCCCcCCCCC---------------------EEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 233445555555 554 677776 589999999999999988865321
Q ss_pred -CCCcCeEEECCCCCE-EEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258 618 -LPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1113)
Q Consensus 618 -~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1113)
...+.++.++|++.. +++...++.|.+||..+.. .+.
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~---------------------------------------- 316 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLT---------------------------------------- 316 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCE----------------------------------------
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cce----------------------------------------
Confidence 124667888886554 4455566778888765441 000
Q ss_pred ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1113)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 775 (1113)
+..+
T Consensus 317 ----------------------------------------------------------~~~i------------------ 320 (543)
T 1nir_A 317 ----------------------------------------------------------VTSI------------------ 320 (543)
T ss_dssp ----------------------------------------------------------EEEE------------------
T ss_pred ----------------------------------------------------------eEEe------------------
Confidence 0000
Q ss_pred EEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceee
Q 001258 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA 853 (1113)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~ 853 (1113)
.+...+..++|+|+|+++++++ +++|.+||+.+++++.
T Consensus 321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 0223355788999999877665 7899999999999888
Q ss_pred eecC----CCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEe
Q 001258 854 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 854 ~~~~----~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s 921 (1113)
.+.. |......+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 7764 44433333 5774577777775 689999999998 899999999999999999999999999987
Q ss_pred -------CCCcEEEEeCCCCccc-cccccccCCCCCCCCCCCceEEEccCCcEEEEE------cCCeEEEEeCCccceee
Q 001258 922 -------ADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVK 987 (1113)
Q Consensus 922 -------~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~------~d~~v~v~d~~~~~~~~ 987 (1113)
.+++|.+||+.+.+.. ....+....+.......+..+.|+|||++++++ .++.|.|||.+|++++.
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 2779999999997754 111111000001112468899999999999874 26899999999999988
Q ss_pred ccc
Q 001258 988 QWV 990 (1113)
Q Consensus 988 ~~~ 990 (1113)
.+.
T Consensus 520 ~i~ 522 (543)
T 1nir_A 520 VVK 522 (543)
T ss_dssp EEC
T ss_pred eec
Confidence 876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.7e-23 Score=239.19 Aligned_cols=303 Identities=11% Similarity=0.083 Sum_probs=222.2
Q ss_pred ccCCeeEEEEcCCCCeeEEEEec----CCC----cEEEEeC--CCCcee--eEeeccCcCEEEEeeeec-----------
Q 001258 464 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK----------- 520 (1113)
Q Consensus 464 h~~~V~~v~~s~~~~~~~l~s~s----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~----------- 520 (1113)
+...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3457888999999887 676776 567 8999999 899987 458889888887776541
Q ss_pred -CCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 521 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 521 -~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|+|+ +|++++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~---------------------~la~~s 197 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS---------------------KLAYVT 197 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS---------------------EEEEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC---------------------EEEEEE
Confidence 013456655554 7999999974 44455555556666666666665 688888
Q ss_pred cCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEE-EEECCCc--EEEEEcCCCccceecccccccccccc
Q 001258 594 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT 667 (1113)
Q Consensus 594 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1113)
.++ .|++||+.+++... +..+ ...+.+++|+|||+.|+ +++.++. |++||+.++. . ..+.
T Consensus 198 ~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l~--------- 263 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQVT--------- 263 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EECC---------
T ss_pred ecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeCc---------
Confidence 765 99999999988764 3333 33688999999999888 5565555 8888887652 1 1110
Q ss_pred CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1113)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1113)
T Consensus 264 -------------------------------------------------------------------------------- 263 (415)
T 2hqs_A 264 -------------------------------------------------------------------------------- 263 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCceEEEEEeCCCceEEEeec-CC--eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258 748 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1113)
Q Consensus 748 ~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l 824 (1113)
.+...+.+++|+|||+.|+.++. ++ .+++|++. ++.... +.. +...+.++
T Consensus 264 -~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~~--~~~~~~~~ 316 (415)
T 2hqs_A 264 -DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--ITW--EGSQNQDA 316 (415)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CCC--SSSEEEEE
T ss_pred -CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Eec--CCCcccCe
Confidence 14456789999999999888876 45 45555543 333221 111 45678899
Q ss_pred EEecCCCEEEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC---cEEEEEcccceeeee
Q 001258 825 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK 897 (1113)
Q Consensus 825 ~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~ 897 (1113)
+|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 9999999999887 3 47999999988764 455454 799999999 889888888777 79999987 556788
Q ss_pred ecccccCeEEEEEcCCC
Q 001258 898 LKGHSKRITGLAFSHAL 914 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~ 914 (1113)
+.+|.+.|.+++|+|..
T Consensus 393 l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCCSSSEEEEEEECCCC
T ss_pred eeCCCCCCcCCcccccc
Confidence 89999999999999864
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.1e-22 Score=253.24 Aligned_cols=259 Identities=14% Similarity=0.106 Sum_probs=175.5
Q ss_pred CCCcEEEEEcCCCCeEEEEEec-CC-----cEEEEecCCcceeEeeeeeeec-----cCCCCcccccccccCCCcceEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467899999999996 777776 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258 427 IWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 427 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 504 (1113)
+|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999882 233 3667888999999999999 577766 56999999998877655
Q ss_pred eeccCcC----------------EEEEeeeecCCceEEEEEecCC---------------------------------cE
Q 001258 505 FEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------KI 535 (1113)
Q Consensus 505 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 535 (1113)
...+... +.+++|+ +||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 3556765 5667888887765 67
Q ss_pred EEEEcCC-CCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-----cCCcEEEEECCCCc
Q 001258 536 KAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSVQ 607 (1113)
Q Consensus 536 ~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~ 607 (1113)
.+||+.+ ++...... .+...+..++| |||+ +|++++ .+..|++||+.+++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~---------------------~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ---------------------HLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT---------------------EEEEEEEETTSSEEEEEEEETTTCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCC---------------------EEEEEEecccCCeEEEEEEECCCCc
Confidence 8888876 55433221 23344555555 5555 566544 35789999999998
Q ss_pred eEEEEccCCCC--CCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258 608 LLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 608 ~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 648 (1113)
....+..+... ..+.+++|+|||+++++++.||.++||.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 87766544311 135689999999988888888888888654
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.6e-23 Score=236.60 Aligned_cols=242 Identities=9% Similarity=0.007 Sum_probs=178.9
Q ss_pred CCCcEEEEEcCCCCeEEEEEe----cCC----cEEEEec--CCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1113)
...|...+|++.|..++++|+ .+| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888999999988788887 467 8999999 888876432 2456666777777
Q ss_pred EcC--------------CCCeEEEEeCC------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC
Q 001258 428 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1113)
Q Consensus 428 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~ 487 (1113)
+++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 664 26677776654 799999998643 33 5778999999999999999 6888887
Q ss_pred CC---cEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCc--EEEEEcCCCCCeeeeeCCCCceEEEEE
Q 001258 488 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1113)
Q Consensus 488 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~ 561 (1113)
|+ .|++||+.++++. .+..|...+.+++|+| +|+.|+ +++.++. |++||+.++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999998875 5677888999999875 456666 6766665 99999987543 445555556666666
Q ss_pred ccCCCeEEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1113)
Q Consensus 562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 638 (1113)
+|||+ +|++++. ++ .|++||+.+++.. .+..+ ...+.+++|+|+|++|++++.
T Consensus 275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEE
T ss_pred CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEEC
Confidence 66665 5776665 44 6888899887643 33333 235778999999999988876
Q ss_pred C---CcEEEEEcCCC
Q 001258 639 D---NGIKILATSDG 650 (1113)
Q Consensus 639 d---g~i~iwd~~~~ 650 (1113)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.1e-22 Score=253.16 Aligned_cols=343 Identities=12% Similarity=0.022 Sum_probs=225.3
Q ss_pred CcceEEEEEcCCCCeEEEEeC-CC-----eEEEEEccCCceeeeeeeeeccc------------------------CCee
Q 001258 420 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 469 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~-d~-----~i~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 469 (1113)
...|.+++|||||++|++++. |+ .|.+||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987554 233332 2389
Q ss_pred EEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee
Q 001258 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1113)
Q Consensus 470 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 547 (1113)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+..++|+| ||++|+.++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 5777765 999999999883 4556777888899999765 567888877 5689999998754433
Q ss_pred eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC-------------------------------
Q 001258 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF------------------------------- 596 (1113)
Q Consensus 548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------------- 596 (1113)
....+...+.. .....+. ......+..+.|+|+|++|++++.|+
T Consensus 187 ~~~~~~~~~~~----g~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 187 LTADGSTTIGN----GIAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp CCCCCCSSEEE----SCCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred eccCCccceec----cccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222221100 0000000 00000122344444444555554433
Q ss_pred --cEEEEECCC-CceEEEEccCCCCCCcCeEEECCCCCEEEEEEC-----CCcEEEEEcCCCccceeccccccccccccC
Q 001258 597 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1113)
Q Consensus 597 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1113)
.|++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++. ....+..
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~--------- 330 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLAHE--------- 330 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEEEE---------
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEEEc---------
Confidence 788999988 876554432223446789999 99999987764 3456666665541 1110000
Q ss_pred CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1113)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1113)
T Consensus 331 -------------------------------------------------------------------------------- 330 (741)
T 2ecf_A 331 -------------------------------------------------------------------------------- 330 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
..++ .-..+.+++|+|
T Consensus 331 ---------------------~~~~-------------------------------------------~~~~~~~~~~sp 346 (741)
T 2ecf_A 331 ---------------------TSPT-------------------------------------------WVPLHNSLRFLD 346 (741)
T ss_dssp ---------------------ECSS-------------------------------------------CCCCCSCCEECT
T ss_pred ---------------------CCCC-------------------------------------------cCCcCCceEECC
Confidence 0000 011234577888
Q ss_pred CCCEEEEEe-CCeEEEEECC-CCceeeeecCCCCCeeEE-EEecCCCcEE-EEEecCC--cEEEEEccc-ceeeeeeccc
Q 001258 829 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH 901 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~s~~d~~~l-a~g~~dg--~v~iwd~~~-~~~~~~l~~h 901 (1113)
||+++++++ +|.++||.++ ++. ...+..+...+..+ .|+| +++.| ++++.++ .++||++.. ++....+..
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 888777766 6766666654 344 67777777788887 5999 67655 5555565 899999875 555666765
Q ss_pred ccCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 001258 902 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 934 (1113)
Q Consensus 902 ~~~V~~l~~s~d~~~L~s~s~D----~~v~iwd~~~~ 934 (1113)
...+.+++|+|||++|+....+ ..+.+|+....
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 6678999999999998876544 46889988653
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.1e-23 Score=256.48 Aligned_cols=235 Identities=9% Similarity=0.064 Sum_probs=165.4
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc---ceEEEEEcCCCCeE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 435 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 435 (1113)
..+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 34678999999994 666 689999999999987654 2444543 49999999999999
Q ss_pred EEEeCC---------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258 436 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 436 as~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 506 (1113)
++++.+ +.|.+||+.+++. ..+....+|...+.+++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999874 7888999999875 32323345666799999999999 5777664 799999999988776665
Q ss_pred ccCcCE------------------EEEeeeecCCceEEEEEecC-CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 507 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 507 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
.+...+ .+++|+| ||+.|++++.| +.+.+|++...... ....+..+.+.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544333 6777764 56788887754 56778876532211 112244455555443
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECC----
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 639 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 639 (1113)
. ..+..|++||+.+++....+..+. +...+.+++|+|||+++++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999888655555331 12357789999999988766532
Q ss_pred CcEEEEEcCCC
Q 001258 640 NGIKILATSDG 650 (1113)
Q Consensus 640 g~i~iwd~~~~ 650 (1113)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 45677776555
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.3e-21 Score=239.82 Aligned_cols=248 Identities=8% Similarity=0.020 Sum_probs=155.6
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcce--eEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+..+.|+ |.. +++++.++ | +||+.+|+. ....... .+.. ...........+...|.+++|||| ++++.+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence 4557788 554 55666677 8 999999876 2211000 0000 000000000112257999999999 666665
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----CceeeEeeccCcC--
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-- 511 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~h~~~-- 511 (1113)
. ++.|++||+.+++... +..+...+.+++|+|||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 4 5999999999886543 556778899999999999 56664 689999999998 7766544444333
Q ss_pred ------------EEEEeeeecCCceEEEEEe---------------------------------cCCcEEEEEcCCCCCe
Q 001258 512 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR 546 (1113)
Q Consensus 512 ------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~ 546 (1113)
+.+++|+ +||++|++++ .+..|++||+.++...
T Consensus 171 ~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred cccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 3667765 5568888887 3467889998765433
Q ss_pred eeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC-----cEEEEECCCCceEEEEccCCCC-
Q 001258 547 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL- 618 (1113)
Q Consensus 547 ~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~- 618 (1113)
.... .+...+..++|+||| ++|++++.++ .|++||+.+++....+......
T Consensus 249 ~~~~~~~~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSPDE---------------------NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ECCCCSCTTCEEEEEEECTTS---------------------SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred eeccCCCCceeEeeEEEECCC---------------------CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 2221 223344555555555 4677766665 8999999998443333211111
Q ss_pred --CCcCeEEECC--CCCEEEEEECCCcEEEEEcC
Q 001258 619 --PASPRIRFNK--DGCLLAVSTNDNGIKILATS 648 (1113)
Q Consensus 619 --~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~ 648 (1113)
..+.+++|+| ||++++++..|+.+++|.+.
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 1346789999 99999999889988888764
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.4e-21 Score=239.64 Aligned_cols=244 Identities=11% Similarity=0.097 Sum_probs=172.0
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCC-----CceeeeecCCCCC--------------eeEEEEecCCCcEEEEEe
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM 879 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~la~g~ 879 (1113)
..+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| ||++|++++
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~ 199 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYR 199 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEE
Confidence 345667788888888877788888888877 6655444333332 58999999 899999887
Q ss_pred ---------------------------------cCCcEEEEEcccceeeeee--cccccCeEEEEEcCCCCEEEEEeCCC
Q 001258 880 ---------------------------------DDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADS 924 (1113)
Q Consensus 880 ---------------------------------~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~d~~~L~s~s~D~ 924 (1113)
.+..|++||+.+++..... ..|...+.+++|+|||++|++++.|+
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 4468999999988765443 25777899999999999999988775
Q ss_pred -----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEEE-cCCeEEEEeCC-ccceeeccccCCCC
Q 001258 925 -----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESS 995 (1113)
Q Consensus 925 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~-~d~~v~v~d~~-~~~~~~~~~~~~h~ 995 (1113)
.|++||+.+++......... .......+..++|+| ||++++++ .++.+++|.+. ++..+..+. .|.
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~ 354 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTLFVET---DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGE 354 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEE---CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSS
T ss_pred CCCeeEEEEEECCCCceeeEEEEcc---CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCC
Confidence 89999999873221111111 111011346789999 99988885 67788888776 566666554 456
Q ss_pred CCeeE-EEECCCCCEEEEEeCC-C----cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-
Q 001258 996 APITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD- 1068 (1113)
Q Consensus 996 ~~v~~-l~~s~dg~~l~s~~~D-g----~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D- 1068 (1113)
..+.+ ++|+|||+.|+.++.+ + .|+.||+.+++. ..+ .|...+. .++|+| ||++|+.+..+
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l--------~~~~~~~--~~~~sp-dg~~l~~~~~~~ 422 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL--------TPESGMH--RTQLSP-DGSAIIDIFQSP 422 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES--------CCSSSEE--EEEECT-TSSEEEEEEECS
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec--------cCCCceE--EEEECC-CCCEEEEEecCC
Confidence 67776 8999999987765544 4 677778777653 233 2333454 488999 77887766444
Q ss_pred ---CcEEEEeccCCC
Q 001258 1069 ---GGVHVFEPLESE 1080 (1113)
Q Consensus 1069 ---g~v~vW~~~~~~ 1080 (1113)
+.|++||+.+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 469999998876
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2e-21 Score=241.33 Aligned_cols=277 Identities=10% Similarity=0.033 Sum_probs=186.7
Q ss_pred ceEEEEEeCCCceEEEeecC---------CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 753 KISRLIFTNSGNAILALASN---------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
.|.+++|+|||+.|++++.+ +.+++||+. ++..... .....+...+..
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~----------------------~~~~~~l-~~~~~~~~~~~~ 118 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP----------------------HGDPQSL-DPPEVSNAKLQY 118 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS----------------------SCCCEEC-CCTTCCSCCCSB
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECC----------------------CCceEec-cCCccccccccc
Confidence 46789999999999988775 566677654 3332111 111124556889
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCe------------------eEEEEecCCCcEEEEEecCC---
Q 001258 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA------------------TFLAFHPQDNNIIAIGMDDS--- 882 (1113)
Q Consensus 824 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i------------------~~l~~s~~d~~~la~g~~dg--- 882 (1113)
++|||||++|+.++++.|++||+.+++..+....+...+ .+++||| ||+.|++++.|+
T Consensus 119 ~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV 197 (723)
T ss_dssp CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence 999999999999999999999999988776665544333 7899999 899999887653
Q ss_pred -------------------------------cEEEEEcccceeeeeeccc------ccCeEEEEEcCCCCEEEEEeC---
Q 001258 883 -------------------------------SIQIYNVRVDEVKSKLKGH------SKRITGLAFSHALNVLVSSGA--- 922 (1113)
Q Consensus 883 -------------------------------~v~iwd~~~~~~~~~l~~h------~~~V~~l~~s~d~~~L~s~s~--- 922 (1113)
.|++||+.+++....+..+ ...+.+++|||||++|++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 277 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence 7999999988765666654 678999999999999977653
Q ss_pred -CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--E-cCC------eEEEEe-CCccc--eeecc
Q 001258 923 -DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HET------QLAIFE-TTKLE--CVKQW 989 (1113)
Q Consensus 923 -D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~-~d~------~v~v~d-~~~~~--~~~~~ 989 (1113)
+..|++||+.+++...... ....+... .....++|+|||+.|+. + .++ .|.+|| ..+++ +...+
T Consensus 278 ~~~~i~~~d~~~g~~~~~~~-~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 354 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKKHE-DESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI 354 (723)
T ss_dssp CEEEEEEEETTTCCEEEEEE-EECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred CeEEEEEEeCCCCcceEEEE-eccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence 3579999998876432110 11111000 00137899999997775 2 455 577777 44444 14444
Q ss_pred ccCCCCCCeeE-EEECCCCCEEEEEeCC---CcEEEEecCCCc--eeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258 990 VPRESSAPITH-ATFSCDSQLVYACFLD---ATVCVFSAANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 990 ~~~~h~~~v~~-l~~s~dg~~l~s~~~D---g~v~vwd~~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
. .+...+.. ++|+|||++|+..+.+ +.+++|+++... ....+.. ...|...+. .++|+| ||++|+
T Consensus 355 ~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~----~~~~~~~~~--~~~~sp-dg~~l~ 425 (723)
T 1xfd_A 355 T--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC----DLVENCTYF--SASFSH-SMDFFL 425 (723)
T ss_dssp C--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST----TSSSSCCCC--EEEECT-TSSEEE
T ss_pred e--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc----cccCCCCeE--EEEECC-CCCEEE
Confidence 3 22334544 6999999999876655 789999987532 2222220 001444555 488999 677766
Q ss_pred EE
Q 001258 1064 LG 1065 (1113)
Q Consensus 1064 s~ 1065 (1113)
..
T Consensus 426 ~~ 427 (723)
T 1xfd_A 426 LK 427 (723)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=5.5e-20 Score=204.33 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=171.1
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-CC
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 442 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 442 (1113)
..|.+++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788888899999999999999999987653 22344456 9999999997777665 88
Q ss_pred eEEEEEccCCce-eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-C--cEEEEeCCCCceeeEeeccCcCEEEEeee
Q 001258 443 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1113)
Q Consensus 443 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1113)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4556666666699999999 56655544 3 8999999999988887644 456788876
Q ss_pred ecCCce-EEEEEecCCc-EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecC
Q 001258 519 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD 595 (1113)
Q Consensus 519 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 595 (1113)
+ +|+ ++++...++. |.+|++.......... ....+.+ .....++|+|++++++++ ..+
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence 5 445 4455556688 9999998644332111 0000111 134456666666655554 468
Q ss_pred CcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258 596 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1113)
Q Consensus 596 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 650 (1113)
+.|++||+.+++. +..+... ..+..++|+|||++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777643 3468999999999776665 4778999999877
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=4.7e-20 Score=206.01 Aligned_cols=281 Identities=10% Similarity=0.133 Sum_probs=190.8
Q ss_pred ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeee
Q 001258 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS 794 (1113)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~ 794 (1113)
.+++++.++.|++|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~----------- 70 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD----------- 70 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT-----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC-----------
Confidence 3445577999999999642111111111 255678899999999998888886 99999987521
Q ss_pred ecCeecCCCCccccc-cccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEEC---CCCceeeeecCCCCCeeEEEEe
Q 001258 795 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH 868 (1113)
Q Consensus 795 ~~~~lw~~~~g~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s 868 (1113)
++.... ..+. ....+..++|+|++++|++++ ++.|.+||+ ...+....+..+ ..+.+++|+
T Consensus 71 ---------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 71 ---------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp ---------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred ---------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence 111100 0011 123688999999999887776 688999999 444455555543 458999999
Q ss_pred cCCCcEEEEEe-cCCcEEEEEccc-ceeee----eecc-cccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Ccccc
Q 001258 869 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQK 938 (1113)
Q Consensus 869 ~~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~--~~~~~ 938 (1113)
| ++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|+.++ .++.|.+|+++. ++...
T Consensus 138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 9 888777777 899999999987 64432 2232 335788999999999776554 789999999964 32211
Q ss_pred ccccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCC--c--cceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 939 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~--~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
................+..++|+|+|++|++ . .++.|.+|++. + .+.+..+. .+. .+.+++|+|||++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence 1111111111111124567999999998886 4 67899999998 3 33444333 223 3899999999999888
Q ss_pred Ee-CCCcEEEEec--CCCce
Q 001258 1013 CF-LDATVCVFSA--ANLKL 1029 (1113)
Q Consensus 1013 ~~-~Dg~v~vwd~--~~~~~ 1029 (1113)
++ .|+.|.+|++ .+++.
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEE
T ss_pred ecCCCCeEEEEEEcCCCcee
Confidence 88 6899999955 46643
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4e-20 Score=205.42 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=196.2
Q ss_pred EEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258 757 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1113)
Q Consensus 757 ~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 835 (1113)
..|.++++. +++...++.|.+||... +....... . +...+ .++|+|+|+++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT-L--GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence 345555555 55666679999988653 33222111 1 34445 9999999997777
Q ss_pred Ee--CCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCC---cEEEEEcccceeeeeecccccCeEEEE
Q 001258 836 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1113)
Q Consensus 836 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1113)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ..+.+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 68999999999887 666766666555599999 888888665553 8999999999988877654 4568999
Q ss_pred EcCCCCEEEEE-eCCCc-EEEEeCCCCcccccc-ccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCCccc
Q 001258 910 FSHALNVLVSS-GADSQ-LCVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLE 984 (1113)
Q Consensus 910 ~s~d~~~L~s~-s~D~~-v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~~~~ 984 (1113)
|+|||++|+++ ..++. |.+|++......... ......+ ..+..++|+|||+++++ + .++.|.+||+.+++
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 99999865554 55688 999999864322111 1111111 24689999999997766 4 57899999999998
Q ss_pred e---eeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCce--eeecCCCcccCCCcccCccceEEEEeCCC
Q 001258 985 C---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus 985 ~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~--~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
. +..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+............... .++|+| |
T Consensus 210 ~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sp-d 283 (331)
T 3u4y_A 210 NITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN--QMALNK-T 283 (331)
T ss_dssp SCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC--CEEECT-T
T ss_pred ccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc--ceEECC-C
Confidence 8 666542 46778999999999877665 478899999999887 3322211000001011112 378999 6
Q ss_pred CCEEEE-EeCCCcEEEEeccCCC
Q 001258 1059 PNEFAL-GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1059 ~~~l~s-~~~Dg~v~vW~~~~~~ 1080 (1113)
|++|++ +..+++|.+||+.+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 777655 4556799999998766
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=3.5e-20 Score=207.05 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=172.2
Q ss_pred CCCCccEEEEecCCCEEEEEe-C-CeEEEEECC--CCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEc
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 889 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~ 889 (1113)
+...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788999999999998887 4 899999997 444 334454433 789999999 788776665 4889999999
Q ss_pred ---ccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Ccccccc--ccccCCCCCCCCCCCceEEEcc
Q 001258 890 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 962 (1113)
Q Consensus 890 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~~sp 962 (1113)
.+.+.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 445555666544 4588999999999888887 899999999987 4322111 1121112 2567899999
Q ss_pred CCcEEEE-E-cCCeEEEEeCCc--cce--eeccc--cCCC--CCCeeEEEECCCCCEEEEEe-CCCcEEEEecC--C--C
Q 001258 963 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--N--L 1027 (1113)
Q Consensus 963 dg~~l~~-~-~d~~v~v~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~--~--~ 1027 (1113)
+|+++++ + .++.+.+|++.. ++. ..... ..++ ...+..++|+|||++|+++. .|+.|++||+. + .
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998766 4 678999999953 432 11111 1111 34677899999999887544 78999999998 3 3
Q ss_pred ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe-CCCcEEEEeccC
Q 001258 1028 KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1078 (1113)
Q Consensus 1028 ~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~-~Dg~v~vW~~~~ 1078 (1113)
+.+..+. .+.. +. .++|+| ||++|++++ .|+.|.+|++..
T Consensus 268 ~~~~~~~-------~~~~-~~--~~~~s~-dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 268 SKEGFQP-------TETQ-PR--GFNVDH-SGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEEE-------CSSS-CC--CEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred EEeeeec-------CCCc-cc--eEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence 3333332 1212 33 488999 678877777 689999996653
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.4e-19 Score=201.19 Aligned_cols=246 Identities=11% Similarity=0.077 Sum_probs=181.3
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEec------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
......+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence 3456788999999999975554433 6789999999988765311 1234678999
Q ss_pred cCCCCeEEEE-eCCCeEEEEEccCCceeeeeeeeecccC---------CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 429 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 429 spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966655 557999999999988665 3333322 27899999999953322224688999999999
Q ss_pred CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC----CCCceEEEEEccCCCeEEecccc
Q 001258 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
++.+..+..+...+..++|++ ++.++++++.++.|.+||..+.+....+.. +...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---------------- 235 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN---------------- 235 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE----------------
T ss_pred CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce----------------
Confidence 999888876666677778764 557899999999999999988665554443 2223334
Q ss_pred CceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258 575 RSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 650 (1113)
++|+|+++++++++ .++.|.+||..+++.+..+.... ...++|+|++++++++. .++.|.+||..++
T Consensus 236 -----~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 236 -----ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp -----EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred -----EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 44555555566655 45999999999999888887542 26799999999766665 6899999998776
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=4e-19 Score=199.33 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=204.6
Q ss_pred cCceEEEEEeCCCceEEEeec-------CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258 751 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~ 823 (1113)
...+..++++|+++.+++++. ++.|.+||.. ++....... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 456789999999998887774 4567777654 333222211 2334678
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCC---------eeEEEEecCCCcEEEEEe--cCCcEEEEEcc
Q 001258 824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1113)
Q Consensus 824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~s~~d~~~la~g~--~dg~v~iwd~~ 890 (1113)
++++|+|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999777665 689999999999988777654322 68899999 777766665 47899999999
Q ss_pred cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
+++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++........ ..++ ...+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGK---EHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSS---CCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCC---CcccceEEECCCCCEEEEE
Confidence 99998888867777899999999999999999999999999986643221110 1111 1245779999999988774
Q ss_pred --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus 971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
.++.|.+||..+++.+..+... ....++|+|||+++++++ .++.|.+||..+++.+..+... .
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~-- 314 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------T-- 314 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------S--
T ss_pred eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------C--
Confidence 4589999999999988777642 236799999999766665 6899999999999988776511 1
Q ss_pred cceEEEEeCCCCCEEEEEeCCC
Q 001258 1048 HPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus 1048 ~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
.+..++|+| ||++|+++..++
T Consensus 315 ~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 315 HPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEECT-TSCEEEEEEECC
T ss_pred CCCeEEEcC-CCCEEEEEEccc
Confidence 234588998 678766666553
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.2e-19 Score=202.06 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred cEEEEecCCCEEEEE-------------eCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 822 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 822 ~~l~~s~~~~~l~~~-------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
.+++|+|+|++++++ .++.|.+||+.+++....+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345666666655555 368999999999888777764 44578899999 88877777 68999999
Q ss_pred cccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEeCCCCcccccccccc
Q 001258 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI 944 (1113)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~ 944 (1113)
+.+++.+..+..+... ..+.|+||++.|+..+.++ .|.+||+.+++... ...
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~ 236 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM---REV 236 (337)
T ss_dssp TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE---EEE
T ss_pred CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE---eec
Confidence 9999888777654411 1237899998776554332 46899998866431 111
Q ss_pred CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
. .+. ..+..++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+
T Consensus 237 ~-~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 237 R-IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp E-ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred C-CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 1 111 245789999999999988 79999999999988777653 346789999999999999999999999999
Q ss_pred CCCceeeecC
Q 001258 1025 ANLKLRCRIN 1034 (1113)
Q Consensus 1025 ~~~~~~~~~~ 1034 (1113)
.+++.+..+.
T Consensus 309 ~~~~~~~~~~ 318 (337)
T 1pby_B 309 ETLEKKGQVD 318 (337)
T ss_dssp TTCCEEEEEE
T ss_pred cCCcEEEEEE
Confidence 9999988876
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=7.2e-20 Score=203.91 Aligned_cols=267 Identities=11% Similarity=0.063 Sum_probs=197.9
Q ss_pred ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC-CccEEEEecCCCEEEEEe--CCe
Q 001258 764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 840 (1113)
Q Consensus 764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s--dg~ 840 (1113)
+.+++++.++.|.+||... +..+.....+ +.. .+..++|+|+|++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999998753 2222111101 211 478899999998776655 689
Q ss_pred EEEEECCCCceeeeecCCC-----CCeeEEEEecCCCcEEEEEe------------cCCcEEEEEcccceeeeeeccccc
Q 001258 841 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 841 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|.+||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998877665321 2577899999 888888876 579999999999888877764 45
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCC--------
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET-------- 973 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~-------- 973 (1113)
.+.+++|+||+++|+++ ++.|++||+.+++.... ...+.. ...+.|+|||++++++ .++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~----~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED----KPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE----ECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee----eecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 68889999999988888 68899999998654321 111110 1223789998877653 222
Q ss_pred ---------------eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcc
Q 001258 974 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus 974 ---------------~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
.|.+||+.+++.. ......+...+.+++|+|||++|+++ ++.|++||+.+++.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence 4789999998876 43334556788899999999999988 79999999999988876641
Q ss_pred cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258 1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus 1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
+ ..+. .++|+| ||++|++++.|+.|.+||+.+++.
T Consensus 279 ---~--~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 ---P--HSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ---S--SCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred ---C--Ccee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 1 2233 588998 788888889999999999999883
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=2.6e-19 Score=200.33 Aligned_cols=248 Identities=11% Similarity=0.138 Sum_probs=167.8
Q ss_pred CCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEcc
Q 001258 817 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 890 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~ 890 (1113)
+...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999443433 3789999997665 3344445667789999999 888888777 78999999996
Q ss_pred c-c--eeeeeecc---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCCce
Q 001258 891 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 957 (1113)
Q Consensus 891 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1113)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 33333321 12348899999999966677778899999998 333211111112222 24578
Q ss_pred EEEccCCcEEEEE--cCCeEEEEeCCc--ccee--eccccCCC----CCCeeEEEECCCCCEEE-EEeCCCcEEEEecCC
Q 001258 958 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1026 (1113)
Q Consensus 958 ~~~spdg~~l~~~--~d~~v~v~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~~~Dg~v~vwd~~~ 1026 (1113)
++|+|||++++++ .++.+.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977773 568899999874 4432 22211110 14588999999999875 555689999999973
Q ss_pred C---ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-CcEEEEec--cCCC
Q 001258 1027 L---KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEP--LESE 1080 (1113)
Q Consensus 1027 ~---~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-g~v~vW~~--~~~~ 1080 (1113)
. +.+..+. .+...+. .++|+| ||++|++++.+ +.|.+|++ .+++
T Consensus 272 ~g~~~~~~~~~-------~~~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS-------TEGDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE-------CSSSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe-------cCCCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 3333332 2223333 588999 78888777654 89999955 4555
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.3e-19 Score=197.43 Aligned_cols=233 Identities=13% Similarity=0.039 Sum_probs=172.3
Q ss_pred CCCCccEEEEecCCCEEEEEeCCeEEEEECCC-CceeeeecCC-CCCeeEEEEecCCCcEEEEEe--cCCcEEEE--Ecc
Q 001258 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIY--NVR 890 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~--~dg~v~iw--d~~ 890 (1113)
|...+.+++|+|+|++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++...|| ++.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666555 36789999999 899999988 33455555 444
Q ss_pred cceeeeeecccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 891 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
+++ ...+..+. .+..++|+||+++|+ +++.|+.+++|+++..... ... ...+. ..+..++|+|+|+++++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence 444 34444443 489999999999887 7788999999996532211 111 11111 36789999999998887
Q ss_pred -E-cCCeEEEEeCC-ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----------CcEEEEecCCCceeeecCC
Q 001258 970 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 970 -~-~d~~v~v~d~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----------g~v~vwd~~~~~~~~~~~~ 1035 (1113)
+ .++.+++|++. .+..+..+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 444555544 567789999999999999988876 569999999886643221
Q ss_pred CcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258 1036 SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus 1036 ~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
. .+|...+.. ++|+| |+++|++++.|.
T Consensus 267 ---~-~~~~~~~~~--~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---L-FGGQGTMNS--PNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---E-EESTTTSCS--CCBCT-TSSEEEEEEECC
T ss_pred ---c-CCCCccccc--ceECC-CCCEEEEEEecc
Confidence 0 145556665 78888 788888777664
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.9e-19 Score=220.22 Aligned_cols=285 Identities=10% Similarity=0.039 Sum_probs=189.5
Q ss_pred eEEEEEeCCCceEEEeec---------CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258 754 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1113)
Q Consensus 754 i~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l 824 (1113)
+.+++|||||+.|+.++. ++.+++|++.. +..+.. .. ....+..+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence 668899999999988876 57888877653 332100 00 12457889
Q ss_pred EEecCCCEEEEEeCCeEEEEECCCCceeeee-cCCCCC-----------------eeEEEEecCCCcEEEEEecCC----
Q 001258 825 ALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPA-----------------ATFLAFHPQDNNIIAIGMDDS---- 882 (1113)
Q Consensus 825 ~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~-----------------i~~l~~s~~d~~~la~g~~dg---- 882 (1113)
+|||||+.|+++.++.|++|++.+++..+.. .++... ..+++||| ||++||+++.|.
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP 194 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence 9999999999999999999999888765433 222221 25899999 899999987652
Q ss_pred ------------------------------cEEEEEcccceee--------eeecccccCeEEEEEcCCCCEEEEEeCC-
Q 001258 883 ------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD- 923 (1113)
Q Consensus 883 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~L~s~s~D- 923 (1113)
.|++||+.+++.. ..+.+|...+.+++||||++++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7889999987653 2245688899999999998877775433
Q ss_pred ---CcEEEEe----CCCCccccccccc-cCCCCCCCCCCCc-----eEEEccCCcEEEE--E-cCC--eEEEEeCCccce
Q 001258 924 ---SQLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 985 (1113)
Q Consensus 924 ---~~v~iwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~~~~spdg~~l~~--~-~d~--~v~v~d~~~~~~ 985 (1113)
..|.+|| +.+++... ... ...++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~--~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPK--TQEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCG--GGEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred cCeEEEEEEcccCCCCCCceEE--EEecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 2488899 77654322 110 001222 1333 7899999997655 3 333 688888887763
Q ss_pred eeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCC--Cce-eeecCCCcccCCCcccCccceEEEEeCC
Q 001258 986 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSNVHPLVIAAHPQ 1057 (1113)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~--~~~-~~~~~~~~~~~~gh~~~v~~i~~~~~p~ 1057 (1113)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+.. .+ .+|...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~-~~~~~~~~--~~~~s~- 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HL-RKERCQYY--TASFSD- 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TT-TTTTBCBE--EEEECG-
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--cc-CCCCCceE--EEEECC-
Confidence 3333 345568888888 88887766655 8889998754 421 222220 00 12444444 378888
Q ss_pred CCCEEE-EEeCC--CcEEEEeccCCC
Q 001258 1058 EPNEFA-LGLSD--GGVHVFEPLESE 1080 (1113)
Q Consensus 1058 d~~~l~-s~~~D--g~v~vW~~~~~~ 1080 (1113)
|+++++ +++.+ ..+.+|++.+++
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 555554 45444 478899998876
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=5.2e-19 Score=192.73 Aligned_cols=240 Identities=15% Similarity=0.109 Sum_probs=171.2
Q ss_pred eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCC-cceeEeeeeeeeccCCCCcccccccccCC-CcceEEEEE
Q 001258 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIW 428 (1113)
Q Consensus 351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~ 428 (1113)
...+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++... +..+| ...|.+++|
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHGI 92 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCEE
T ss_pred eeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceEE
Confidence 4455668999999999999996 66665 88999999998 76543 23344 468899999
Q ss_pred cCCCCeEEEEe--CCCeEEEEEc--cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceee
Q 001258 429 SPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQY 503 (1113)
Q Consensus 429 spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~ 503 (1113)
+|||++|++++ .++.+.||.+ .++. .. .+..+ ..+.+++|+|+++. ++++++.|+.++||++. .+....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcce
Confidence 99999999998 3345555554 4544 22 34333 35999999999995 34478889999999964 234456
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcC-CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 581 (1113)
.+..|...+.+++|++ ++.+|+.++ .++.+++|++. .......+..+...+..++|+|+|+
T Consensus 167 ~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------------- 229 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD--------------- 229 (297)
T ss_dssp ECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS---------------
T ss_pred EcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC---------------
Confidence 6777888999999875 446666555 59999999987 3344444444444555555555554
Q ss_pred ecCCCCEEEEEecC-----------CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258 582 FDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1113)
Q Consensus 582 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 640 (1113)
+|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 230 ------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 ------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 66666654 569999999887654443222344688999999999998887654
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=4.7e-18 Score=194.54 Aligned_cols=259 Identities=13% Similarity=0.140 Sum_probs=172.6
Q ss_pred CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
..+..+++++++..+++++.++ +++|+........... .....+........ ..+...|.+++|+|+|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL 105 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence 4578899999999999998887 8888764321100000 00000000000000 12566799999999999
Q ss_pred EEE----EEe-CCeEEEEECCCC--------ce---eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 832 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 832 ~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
+|+ +++ |++|+|||+.++ +. +..+.+|...|.+++|+|+++.+|++++.||.|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 555 799999998764 11 35566788999999999955899999999999999999998777
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEccCCcEEEE--EcC
Q 001258 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VHE 972 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~spdg~~l~~--~~d 972 (1113)
....+|...|++++|+|+|++|++++.|++|++||++ ++.... +..... .......+.+++|++++.++++ ..+
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 7777899999999999999999999999999999998 322111 111111 0011136889999999998877 244
Q ss_pred C------eEEEEeCCccce-----eecccc-----CCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEec
Q 001258 973 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1113)
Q Consensus 973 ~------~v~v~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~ 1024 (1113)
+ .+++|++.+.+. ...+.. .+...+-..+.+-+|.+++++++.. +.|.|...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 3 389999976521 111110 0112222233344777777666543 33555543
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=2.7e-18 Score=191.92 Aligned_cols=278 Identities=13% Similarity=0.135 Sum_probs=182.0
Q ss_pred CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec---CCeEEEEEccccccCCCCceeeeecCe
Q 001258 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 798 (1113)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1113)
.++.+.+|.++.... ....+... .+......++|+|+|+ +++++. ++.|.+|++..+...
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 456788888875221 22221111 1445677899999999 666554 589999987532110
Q ss_pred ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cc--eeeeecC---------CCCCeeE
Q 001258 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK--TMATFMP---------PPPAATF 864 (1113)
Q Consensus 799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~--~~~~~~~---------~~~~i~~ 864 (1113)
.+.. .. .+...+..++|+|||++|++++ ++.|.+|++.. +. .+..+.. ....+.+
T Consensus 77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 0000 00 1456688999999999988887 68999999962 22 2333321 1234788
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEcc-cceee--eeeccc-ccCeEEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Cccc
Q 001258 865 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 937 (1113)
Q Consensus 865 l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~L~s-~s~D~~v~iwd~~~--~~~~ 937 (1113)
++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778899999998 45432 222222 236788999999996665 45788999999875 3221
Q ss_pred cccccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCCc-c--ceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~~-~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
.................+..++|+|||++|++ . .++.|.+|++.. + +.+..+. .+...+..++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 11111111111111124678999999998866 3 578999999973 2 3333333 44567899999999999988
Q ss_pred EeCC-CcEEEE--ecCCCcee
Q 001258 1013 CFLD-ATVCVF--SAANLKLR 1030 (1113)
Q Consensus 1013 ~~~D-g~v~vw--d~~~~~~~ 1030 (1113)
++.+ +.|.+| |..++++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8765 899999 55667665
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=3.6e-18 Score=195.43 Aligned_cols=198 Identities=14% Similarity=0.080 Sum_probs=142.0
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE-
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 436 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 436 (1113)
...++.+++++++.+ +++|+.++ |+||+......... ...+. .............|.+.|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 346899999999994 88888787 89988643211000 00000 0000001111234667899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------ceeeeeeeeecccCCeeEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258 437 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 437 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 504 (1113)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999865 223334467789999999999998 56 799999999999999999987777
Q ss_pred eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-------CceEEEEEccCCC
Q 001258 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGT 566 (1113)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~ 566 (1113)
..+|...|.+++|+++ |.+|++|+.||.|++||++ ......+..+. ..+.+++|++++.
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 7889999999998764 5899999999999999998 34443333221 1455555555443
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=8.2e-19 Score=217.28 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=153.6
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc---ceEEEEEcCCCCeEEEEe
Q 001258 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~~ 439 (1113)
.++|+|||+ ++++ +.|++|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 4555 4699999999999886542 233322 489999999999999987
Q ss_pred C---------CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccC
Q 001258 440 S---------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE 509 (1113)
Q Consensus 440 ~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~ 509 (1113)
. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.++ |+.|++||+.+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752100 12 25689999999999 466665 789999999888765432 3333
Q ss_pred cCE-----------------EEEeeeecCCceEEEEEecCC----------------------------------cEEEE
Q 001258 510 APV-----------------YSVCPHHKENIQFIFSTALDG----------------------------------KIKAW 538 (1113)
Q Consensus 510 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 538 (1113)
..| .+++|+ +||++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 323 366765 5668898887652 56777
Q ss_pred EcCCCCCe--ee------eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC----CcEEEEE----
Q 001258 539 LYDNLGSR--VD------YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----FSIKFWD---- 602 (1113)
Q Consensus 539 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd---- 602 (1113)
|+.++... .. +..+...+..++|+||++ .+++.... ..|.+||
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~---------------------~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER---------------------VCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE---------------------EEEEEEESSTTEEEEEEEEECSS
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe---------------------EEEEEeccccCeEEEEEEcccCC
Confidence 77654431 11 112334455555555543 44443322 3488899
Q ss_pred CCCCceEEEE----ccCCCCCCcC-----eEEECCCCCEEEE--EECCCc--EEEEEcCC
Q 001258 603 MDSVQLLTSI----DADGGLPASP-----RIRFNKDGCLLAV--STNDNG--IKILATSD 649 (1113)
Q Consensus 603 ~~~~~~~~~~----~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~--i~iwd~~~ 649 (1113)
..+++....+ ..+ ...+. .+.|+|||+.++. ...+|. |.+|++.+
T Consensus 289 ~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 289 WQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp SSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred CCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 7777654433 222 23454 7899999996554 445554 44455443
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.1e-18 Score=206.10 Aligned_cols=234 Identities=10% Similarity=0.042 Sum_probs=168.5
Q ss_pred CCCCcEEEEEcCCCCeEEEEEec-CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC-cceEEEEEcCCCCe
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 434 (1113)
+..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|..++|||| ++
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~ 77 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV 77 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence 3567999999999997 666555 9999999997665443 33444 68999999999 77
Q ss_pred EEEEeC---CCeEEEEEccC--CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258 435 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1113)
Q Consensus 435 las~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 509 (1113)
+++++. +....||.+.. ..... .+..+ ..+...+|+||++.+++++++.++.+ +||+.+++.......+.
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG 152 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC
Confidence 777765 45566765543 22121 22222 23456789999987566666666554 99999887665554333
Q ss_pred cCEEEEeeeecCCceEEEEEecC----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 510 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+
T Consensus 153 ---~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~------------------- 207 (582)
T 3o4h_A 153 ---FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK------------------- 207 (582)
T ss_dssp ---CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred ---ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence 5666654 56899988777 78999999876544 4555666667777777766
Q ss_pred CCEEEEEecCC--cEEEEECCCCceEEEEccCCCCCCcCeEE--------ECCCCCEEEEEECCCcEEEEEc
Q 001258 586 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 586 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
+|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.++.+++|++
T Consensus 208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 577777788 8999999998877 55433 33566677 9999999999999999999997
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.1e-17 Score=206.70 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=157.8
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc-----ceEEEEEcCCCC
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 433 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 433 (1113)
....+++|+|||++ ++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 34568999999984 7775 9999999999998654 2334432 334589999999
Q ss_pred eEEEEeCC---------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-
Q 001258 434 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY- 503 (1113)
Q Consensus 434 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~- 503 (1113)
+|+.++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+. ||.+ .|+.|++||+.++...+
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 56679999998754 36678889999999999994 6666 47899999998887544
Q ss_pred EeeccCcCE-----------------EEEeeeecCCceEEEEEecCCc-EEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258 504 IFEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1113)
Q Consensus 504 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 565 (1113)
+..++...+ .++.|+ +||+.|+.++.|.. +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS--pDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEEC--CCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 223333333 235654 56788888876554 8888764321110 122334455555554
Q ss_pred CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC---Cc--eEEEEccC----CCCCCcCeEEECCCCCEEEEE
Q 001258 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1123689999998 73 22333321 123457899999999977665
Q ss_pred EC----CCcEEEEEcCCC
Q 001258 637 TN----DNGIKILATSDG 650 (1113)
Q Consensus 637 ~~----dg~i~iwd~~~~ 650 (1113)
.. +..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 43 236899998877
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.2e-18 Score=207.39 Aligned_cols=270 Identities=10% Similarity=0.053 Sum_probs=187.0
Q ss_pred cCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCCceEEEEEec---CCcEEEEE
Q 001258 465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAWL 539 (1113)
Q Consensus 465 ~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd 539 (1113)
..+|++++|+|||+ .|++++. |++++||++.+++. ..+..|. ..+..++|++ | .++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence 55899999999999 6777766 99999999866654 4555555 6888999874 4 67777765 55567766
Q ss_pred cCC--CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258 540 YDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1113)
Q Consensus 540 ~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1113)
+.. ......+.... .+...+|+|+|+. .+++.+.++.+.+||+.+++.......+.
T Consensus 95 ~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVK-PMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EETTSTTCCEECTTSC-SBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred EeccCCCccccccCCC-CceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence 654 33222222221 2334456666542 23344444555699999887666554331
Q ss_pred CCCcCeEEECCCCCEEEEEECC----CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258 618 LPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1113)
Q Consensus 618 ~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1113)
.+++|+|||++|++++.+ +.|++||+.++. .. .+.
T Consensus 153 ----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~----------------------------------- 191 (582)
T 3o4h_A 153 ----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD----------------------------------- 191 (582)
T ss_dssp ----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC-----------------------------------
T ss_pred ----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee-----------------------------------
Confidence 789999999999988776 567777765551 10 000
Q ss_pred ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1113)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 773 (1113)
T Consensus 192 -------------------------------------------------------------------------------- 191 (582)
T 3o4h_A 192 -------------------------------------------------------------------------------- 191 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CC--eEEEEECCCCc
Q 001258 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFK 850 (1113)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~ 850 (1113)
.+...+..++|||||++|+++. ++ .|++||+.+++
T Consensus 192 ------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 192 ------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp ------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred ------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 0333455677777777777555 56 78888888877
Q ss_pred eeeeecCCCCCeeEEE--------EecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001258 851 TMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922 (1113)
Q Consensus 851 ~~~~~~~~~~~i~~l~--------~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~ 922 (1113)
.. .+..+...+..++ |+| ||.++++++.||.+++|++ ++... .+.+.|.+++|+ |++++++++.
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred EE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcC
Confidence 76 6666776677677 999 7799999999999999999 66554 344678999999 9999999888
Q ss_pred CCc---EEEEeCCC
Q 001258 923 DSQ---LCVWSSDG 933 (1113)
Q Consensus 923 D~~---v~iwd~~~ 933 (1113)
+.+ +.+||..+
T Consensus 302 ~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 302 LSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEEEETTCC
T ss_pred CCCCCeEEEEcCCC
Confidence 754 66666654
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=5e-18 Score=189.98 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=178.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEE-EEEecCCcEEEEEcccceeeeeec
Q 001258 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.++++++++++++++ +++|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356778888888887 8999999999998888776443 2578999999 77655 555678999999999998877765
Q ss_pred cc------ccCeEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258 900 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1113)
Q Consensus 900 ~h------~~~V~~l~~s~d~~~L~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 961 (1113)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... ....... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 33 2347899999999999998865 8999999988543221 1111111 257889999
Q ss_pred cCCcEEEEEcCCeEEEEeCCccceeeccccCC------------------------------------------------
Q 001258 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 993 (1113)
Q Consensus 962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~------------------------------------------------ 993 (1113)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5554 3449999999988776554221
Q ss_pred ------------------CCCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258 994 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus 994 ------------------h~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
+...+..++|+| ||++++++ ++.|.+||+.+++.+..+.. + ..+. .++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~--~~~~--~~~~ 302 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------D--HTYY--CVAF 302 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------S--SCCC--EEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------C--CCcc--ceEE
Confidence 011456778889 99999988 88999999999988876641 1 1233 5889
Q ss_pred eCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258 1055 HPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus 1055 ~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
+| ||++|++++.++.|.+||+.+++.
T Consensus 303 s~-dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 303 DK-KGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred CC-CCCEEEEecCCCeEEEEeccccce
Confidence 98 677777788899999999999883
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=3.6e-17 Score=202.26 Aligned_cols=364 Identities=11% Similarity=0.026 Sum_probs=221.9
Q ss_pred CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe---eeecCCceEEEEEecC---------Cc
Q 001258 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC---PHHKENIQFIFSTALD---------GK 534 (1113)
Q Consensus 467 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d---------g~ 534 (1113)
...+++|+|||+ +++++ |++|++||+.++++...+.+|......++ +..++||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 467899999998 67776 89999999999998888888765432221 1235677899888876 56
Q ss_pred EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1113)
+.+||+.+++.. .+..+...+...+|||||+ .|+.+ .++.|++|++.+++... +..
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---------------------~la~~-~~~~i~~~~~~~~~~~~-lt~ 149 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYR-ITW 149 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEE-CCS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCC---------------------EEEEE-ECCeEEEEECCCCceEE-EcC
Confidence 779999886533 3444445566677777766 56655 57899999998877543 222
Q ss_pred CCCC-----------------CCcCeEEECCCCCEEEEEECCCc-EEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258 615 DGGL-----------------PASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1113)
Q Consensus 615 ~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1113)
.++. .....+.|||||+.|+.++.|.+ +.+|++......
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~----------------------- 206 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----------------------- 206 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----------------------
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----------------------
Confidence 2211 11134667777776666654332 444443111000
Q ss_pred cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1113)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1113)
T Consensus 207 -------------------------------------------------------------------------------- 206 (740)
T 4a5s_A 207 -------------------------------------------------------------------------------- 206 (740)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1113)
Q Consensus 757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 836 (1113)
. .+...+..+.+.+.|...
T Consensus 207 -----------------------------------------------~-----------~~~~~~~~~~yp~~G~~~--- 225 (740)
T 4a5s_A 207 -----------------------------------------------S-----------LQYPKTVRVPYPKAGAVN--- 225 (740)
T ss_dssp -----------------------------------------------T-----------CSSCEEEEEECCBTTSCC---
T ss_pred -----------------------------------------------C-----------CCCCcceeecCCCCcCcC---
Confidence 0 011112223333332210
Q ss_pred eCCeEEEEECCC---Cc--eeeeec------CCCCCeeEEEEecCCCcEEEEEec----CCcEEEEEcccce----ee--
Q 001258 837 SGGKISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK-- 895 (1113)
Q Consensus 837 sdg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~d~~~la~g~~----dg~v~iwd~~~~~----~~-- 895 (1113)
...+|++||+.+ ++ ....+. ++...+..++|+| ||++++.... +..|++||+.+++ +.
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 013678888887 63 222333 3667799999999 8887666543 3379999999887 32
Q ss_pred eee--cccccCeE-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 896 SKL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 896 ~~l--~~h~~~V~-----~l~~s~d~~~L~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
..+ .+|...|. ..+|+|||+.|+ ..+. + ..|++||+.+++. ..+..+.. .+..+ +.+|+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~-~~~d~ 374 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGI-EALTS 374 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEE-EEECS
T ss_pred EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEE-EEEeC
Confidence 222 45665554 789999999887 6654 3 4688888887543 22222321 23333 23557
Q ss_pred cEEEE-EcC-------CeEEEEeCCccceeecccc--CCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceee
Q 001258 965 IHFLV-VHE-------TQLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC 1031 (1113)
Q Consensus 965 ~~l~~-~~d-------~~v~v~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~ 1031 (1113)
+.++. +.. ..|...++.++.....+.. .+....+..+.||||+++++..... ..+.+++..+++...
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 77766 433 2566666665543322221 1234578899999999987755433 468888988877655
Q ss_pred ec
Q 001258 1032 RI 1033 (1113)
Q Consensus 1032 ~~ 1033 (1113)
.+
T Consensus 455 ~l 456 (740)
T 4a5s_A 455 VL 456 (740)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.9e-16 Score=177.93 Aligned_cols=230 Identities=12% Similarity=0.115 Sum_probs=145.0
Q ss_pred ceEEEEEeCCCceEEEee-cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258 753 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1113)
Q Consensus 753 ~i~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~ 831 (1113)
....+++ +++.++++. .++.+.+|++............ +.....+... ...+...+.+++|+|+|+
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~g~~~~~-----~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------IEFKGSGPDK-----ERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------EECCCCCSCT-----TTCSSCCEEEEEECTTSS
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------EEccCCCCCc-----cccCCCcceEEEECCCCC
Confidence 3455666 777676665 4689999998632110000000 0000000000 001334568899999999
Q ss_pred EEEEEe--CCeEEEEECCCCce------e-------eeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccccee-
Q 001258 832 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV- 894 (1113)
Q Consensus 832 ~l~~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~- 894 (1113)
+++++. ++.|++|++..... + .........+..++|+| +++++++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 887766 68999999875431 1 11223445678999999 888777776 689999999987754
Q ss_pred -eeee---cccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeCC--CCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258 895 -KSKL---KGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 895 -~~~l---~~h~~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~ 966 (1113)
+..+ ..+...+.+++|+|||++|++++.+ +.|.+|+++ +++........ .+ ..+..++|+|||++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g-----~~~~~~~~spdg~~ 319 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TG-----IHPRNFIITPNGKY 319 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CS-----SCCCEEEECTTSCE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CC-----CCCceEEECCCCCE
Confidence 2222 3344567899999999998776654 899999996 33221111111 12 25689999999999
Q ss_pred EEEE--cCCeEEEE--eCCccceeeccccCCCCCCeeEEEEC
Q 001258 967 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus 967 l~~~--~d~~v~v~--d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
|+++ .++.|.+| |..+++...... ..+...+.|+.|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 8885 56889995 555776654421 1234578888885
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=9.2e-17 Score=180.54 Aligned_cols=275 Identities=11% Similarity=0.100 Sum_probs=180.3
Q ss_pred cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC----CeEEEEEccccccCCCCceeeeec
Q 001258 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA 796 (1113)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~ 796 (1113)
+.++.|.+|.++..... ...+.. . +......++|+|+|+.|++++.+ +.+.+|++...
T Consensus 24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~------------- 85 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE------------- 85 (361)
T ss_dssp SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-------------
T ss_pred CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-------------
Confidence 34678999988643221 111111 1 44566779999999999988875 79999987531
Q ss_pred CeecCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeee------cC--------CC
Q 001258 797 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP 859 (1113)
Q Consensus 797 ~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~ 859 (1113)
+|.+... ... .+...+..+++ ++++|+++. ++.|.+|++.....+..+ .+ +.
T Consensus 86 -------~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 86 -------KGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp -------TTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred -------CCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 1211100 000 03345666777 888888876 689999999754333221 11 12
Q ss_pred CCeeEEEEecCCCcEEEEEe-cCCcEEEEEcccce-------ee------eeecccccCeEEEEEcCCCCEEEEEe-CCC
Q 001258 860 PAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS 924 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~ 924 (1113)
..+.+++|+| ++++|++++ .++.|++|++.... +. .....+...+.+++|+|||++|++++ .++
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 3458899999 887665544 58899999987533 11 11223455688999999999887777 689
Q ss_pred cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-c--CCeEEEEeCC--ccc--eeeccccCCCCCC
Q 001258 925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 997 (1113)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~--d~~v~v~d~~--~~~--~~~~~~~~~h~~~ 997 (1113)
.|.+|++.+++............+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~ 307 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH 307 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence 9999999865432222122222211 235789999999998774 3 4789999985 454 333333 2 457
Q ss_pred eeEEEECCCCCEEEEEe-CCCcEEEEe--cCCCceee
Q 001258 998 ITHATFSCDSQLVYACF-LDATVCVFS--AANLKLRC 1031 (1113)
Q Consensus 998 v~~l~~s~dg~~l~s~~-~Dg~v~vwd--~~~~~~~~ 1031 (1113)
+.+++|+|||++|++++ .++.|.+|+ ..++++..
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 88999999999998888 678999965 45676653
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=2.2e-17 Score=185.54 Aligned_cols=250 Identities=11% Similarity=0.102 Sum_probs=169.2
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECC-CCceeeeecC-CCCCeeEEEEecCCCc--EEEEEe-------------cC
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD 881 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~la~g~-------------~d 881 (1113)
..+..++++|+|++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999998884499999997 7765433221 112366789999 787 355553 68
Q ss_pred CcEEEEEcc-cceeeeeec----ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCccccccccccCCCCCCCCCC
Q 001258 882 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS 954 (1113)
Q Consensus 882 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 954 (1113)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++........... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544443 25567999999999998887764 6789999998 55432111111111 01 24
Q ss_pred CceEEEccCCcEEEEE--cCCeEEEEeCC--cccee------ecccc--CCCCC------CeeEEE-ECCCCCEEEEEeC
Q 001258 955 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACFL 1015 (1113)
Q Consensus 955 i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~dg~~l~s~~~ 1015 (1113)
+..++|+|||++++++ .++.+.+|+++ +++.. ..+.. .+|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 6889999999998874 36789999765 56542 12211 12222 588999 9999999887764
Q ss_pred CC------cEEEEecC-CCceeeecCCCcccCCCcccCccceEEEEeCC--CCCEEEEEeCC-CcEEEEeccCC
Q 001258 1016 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1079 (1113)
Q Consensus 1016 Dg------~v~vwd~~-~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1079 (1113)
+. .|.+|+++ ++++..... ..+ .+...+.. ++|+|. ||++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~~~~~~~--~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TPTSGGHS--NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CSSCCTTC--CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeee---eee-cCCCCccc--ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 566543110 000 12223333 678885 68899888765 89999999765
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=3.4e-17 Score=183.18 Aligned_cols=260 Identities=12% Similarity=0.076 Sum_probs=181.5
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE-EeC
Q 001258 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYS 440 (1113)
Q Consensus 362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~ 440 (1113)
+.++++++++ ++++++.+++|.+||..+++.+.... .+....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence 3457788877 68999999999999999987765311 112225778999999997654 456
Q ss_pred CCeEEEEEccCCceeeeeeeee-cc-----cCCeeEEEEcCCCCeeEEEEecCC------------CcEEEEeCCCCce-
Q 001258 441 RHIVQIYSYHGGDEVRQHLEID-AH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK- 501 (1113)
Q Consensus 441 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~V~~v~~s~~~~~~~l~s~s~d------------~~i~iwd~~~~~~- 501 (1113)
++.|.+||+.+++.+.. +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999999876542 32 22 23488999999999 56666644 8999999998543
Q ss_pred --eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------------------C---c
Q 001258 502 --QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---W 555 (1113)
Q Consensus 502 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~ 555 (1113)
+..+. +...+.+++|++ +|. ++.++. .|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 33444 334577777654 556 555543 49999998877665554332 0 2
Q ss_pred eEEEEEccCCCeE---------Ee--------------ccccCceeEEEecC-CCCEEEEEecCCcEEEEECCCCceEEE
Q 001258 556 CTTMAYSADGTRT---------YQ--------------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTS 611 (1113)
Q Consensus 556 v~~~~~s~~~~~~---------~~--------------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 611 (1113)
...+++++++... +. ......+..++++| ++++++++ ++.|.+||+.+++.+..
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 3345555543210 00 00122456678899 99998888 88999999999998887
Q ss_pred EccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258 612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 612 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1113)
+.... .+.+++|+|++++|++++.++.|.+||..++ +.+..+
T Consensus 291 ~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 291 ANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp EECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred EcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 76432 3679999999998888888999999999887 444444
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.9e-16 Score=177.53 Aligned_cols=252 Identities=13% Similarity=0.002 Sum_probs=161.6
Q ss_pred eEeccCCCCcEE-----EEEcCCCCeEEEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258 352 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1113)
Q Consensus 352 ~~~~~h~~~V~~-----~~~spdg~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 424 (1113)
.++-.|...+.. .+|||||++|++++..+| .|.+||+.+++... +..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence 333336555555 889999997554444366 48888998887654 3455666666
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEE--EcCCCCeeEEEE------------------
Q 001258 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------ 484 (1113)
Q Consensus 425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s------------------ 484 (1113)
.++|||||++|+.++.++.|.+||+.+++... .+..+...+.... ++++++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987554 2344555454444 489998 4542
Q ss_pred ----ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCC-
Q 001258 485 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG- 553 (1113)
Q Consensus 485 ----~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~- 553 (1113)
.+.+..|.+||+.+++. ..+..+...+..++|+|. +|..|+.+..+ ..|.++|..............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCce-EEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 23457899999998865 445556777888887651 45777766653 367777776543332222221
Q ss_pred CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-c-C---CcEEEEECCCCceEEEEccCC--CC-CCcCeEE
Q 001258 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR 625 (1113)
Q Consensus 554 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~~ 625 (1113)
..+...+|+|||+ .|+..+ . + ..|++||+.+++......... +. .....++
T Consensus 238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 2355566666665 343332 2 2 239999999887543322221 00 0123458
Q ss_pred ECCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001258 626 FNKDGCLLAVS---------TNDNGIKILATSDG 650 (1113)
Q Consensus 626 ~s~~~~~l~~~---------~~dg~i~iwd~~~~ 650 (1113)
|+|||+.|+.. ..+..|++||+.++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTT
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99999988764 34567999998776
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=4e-16 Score=177.35 Aligned_cols=207 Identities=10% Similarity=0.023 Sum_probs=141.2
Q ss_pred ccCCCcceEE-----EEEcCCCCeEEEEeC-CC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC
Q 001258 416 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1113)
Q Consensus 416 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~ 487 (1113)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556555555 899999999999887 66 48888999887554 3445666666889999999 6888888
Q ss_pred CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEE----------------------ecCCcEEEEEcCCCCC
Q 001258 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS 545 (1113)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~ 545 (1113)
++.|++||+.+++....+..+...+....|..++++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 899999999999887777766666655565556777777643 2346789999887643
Q ss_pred eeeeeCCCCceEEEEEcc-CCCeEEeccccCceeEEEecCCCCEEEEEec------CCcEEEEECCCCceEEEEccCCCC
Q 001258 546 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 618 (1113)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1113)
. .+..+...+..+.|+| ||+ .|+.+.. ...|.++|...+... .+..+...
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~ 237 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEG 237 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTT
T ss_pred E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCC
Confidence 3 3333334455666666 555 4555443 347888888665443 33322211
Q ss_pred CCcCeEEECCCCCEEEEEECC-C----cEEEEEcCCC
Q 001258 619 PASPRIRFNKDGCLLAVSTND-N----GIKILATSDG 650 (1113)
Q Consensus 619 ~~v~~~~~s~~~~~l~~~~~d-g----~i~iwd~~~~ 650 (1113)
..+...+|+|||+.|+..+.+ + .|++||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 246678999999977654432 2 2888887666
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=3.1e-15 Score=166.81 Aligned_cols=228 Identities=9% Similarity=0.022 Sum_probs=139.0
Q ss_pred CCCeEEEEEe-----cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe----
Q 001258 369 VQQTLLLVGT-----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1113)
Q Consensus 369 dg~~ll~~gs-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1113)
++++++++.. .|+.|.+||..+++.+.. +..+..+ .++|||||++|.+++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 5565444432 378999999999887653 2233334 899999999999986
Q ss_pred ------CCCeEEEEEccCCceeeeeeeeec---ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCceeeE-eec
Q 001258 440 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG 507 (1113)
Q Consensus 440 ------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~-~~~ 507 (1113)
.++.|.+||..+++.+..+..... +......++|+|||++ ++++. .+++|.+||+.+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 367899999998887664322211 2346788999999995 55444 368999999999988877 542
Q ss_pred cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
.+ ...+.+.+... ..+++.+.||.+.+|++........... . ...|.+... ...+.+.+++.
T Consensus 151 -~~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~----~~~~~~~~~----------~~~~~~~~~g~ 212 (361)
T 2oiz_A 151 -AG-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQSR-S----KQMFSVKDD----------PIFIAPALDKD 212 (361)
T ss_dssp -TT-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEEE-C----CCCSCTTTS----------CBCSCCEECSS
T ss_pred -CC-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeecc-c----cceEcCCCC----------ceEEEecccCC
Confidence 22 12233334332 5778889999999999865333221000 0 001111111 01122244455
Q ss_pred EEEEEecCCcEEEEECCCCceE--EEEccCC------C--CCCcCeEEECCCCCEEEEEE
Q 001258 588 RFLAAGDDFSIKFWDMDSVQLL--TSIDADG------G--LPASPRIRFNKDGCLLAVST 637 (1113)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~------~--~~~v~~~~~s~~~~~l~~~~ 637 (1113)
.++..+.++.|.++|+..+... ..+.... . ......++|+|+++.++++.
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 6777778899999998755422 2221110 0 01122377888877666654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=8.7e-15 Score=163.24 Aligned_cols=304 Identities=10% Similarity=0.097 Sum_probs=194.5
Q ss_pred CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe----------cCCcEEEEEcCCCCCeeeeeCCCCce
Q 001258 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC 556 (1113)
Q Consensus 487 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v 556 (1113)
.|+.|.+||..+++.+..+..+..+ .++|+ ++|++++++. .++.|.+||..+.+....+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~s--pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVS--NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEEC--TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEEC--CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999999999998888776555 67765 5667888776 36789999998766665544321100
Q ss_pred EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec--CCcEEEEECCCCceEEE-EccCCCCCCcCeEEECCCC-CE
Q 001258 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL 632 (1113)
Q Consensus 557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~ 632 (1113)
........++++|++++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..
T Consensus 105 ---------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 105 ---------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS 165 (361)
T ss_dssp ---------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE
T ss_pred ---------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee
Confidence 00012233555666667877763 68999999999988877 54321 2235677765 67
Q ss_pred EEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccC
Q 001258 633 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 712 (1113)
Q Consensus 633 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1113)
+++.+.||.+.+|+.....+...... .
T Consensus 166 ~~~~~~dg~~~~v~~~~~g~~~~~~~--~--------------------------------------------------- 192 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGEDGKVASQSR--S--------------------------------------------------- 192 (361)
T ss_dssp EEEEETTSSEEEEEECTTSSEEEEEE--C---------------------------------------------------
T ss_pred EEEECCCCcEEEEEECCCCcEeeecc--c---------------------------------------------------
Confidence 88889999999998765212221100 0
Q ss_pred CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee
Q 001258 713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 792 (1113)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 792 (1113)
..+|+... .. ..+.+++++..++..+.++.+.++|+...... .
T Consensus 193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-----~ 235 (361)
T 2oiz_A 193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-----V 235 (361)
T ss_dssp -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-----E
T ss_pred -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce-----e
Confidence 00011100 00 01112344555555556677777776422110 0
Q ss_pred eeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe------------CCeEEEEECCCCceeeeecCCCC
Q 001258 793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP 860 (1113)
Q Consensus 793 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~ 860 (1113)
+..|+........... .......++++|+++.++++. .++|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 0011111110000000 011223478999988877653 2479999999999999998776
Q ss_pred CeeEEEEecCCCcEEEEEecCCcEEEEEcccc--eeeeeecccccCeEEEEEcCCCC
Q 001258 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN 915 (1113)
Q Consensus 861 ~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 915 (1113)
+.+++|+| |+++|+++.. +.|.+||..++ +.+..+..+......++++|||+
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8888888876 99999999999 99999877888889999999986
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=2.3e-15 Score=169.01 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=163.8
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecC-CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe-
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVG-SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL- 434 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~- 434 (1113)
+...+..++|+|||++ |++++.+ .|.+|++. +++...... ...+ +.+.+++|+|||++
T Consensus 38 ~~~~~~~~a~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l 97 (365)
T 1jof_A 38 QDEPISWMTFDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI 97 (365)
T ss_dssp TTCCCSEEEECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred CCCCCcEEEECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence 4457889999999996 6677766 99999997 776543110 0111 12556899999994
Q ss_pred -EEEEe-------------CCCeEEEEEcc-CCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCC
Q 001258 435 -FGVAY-------------SRHIVQIYSYH-GGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDAT 497 (1113)
Q Consensus 435 -las~~-------------~d~~i~iwd~~-~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~ 497 (1113)
+++++ .++.+.+|++. +++.......+. .+...+.+++|+|||+. ++++ ..++.|++||+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY--LYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE--EEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE--EEEEcCCCCEEEEEEEC
Confidence 55553 68999999997 455433222221 25568999999999994 5544 346899999998
Q ss_pred -CCcee--eEee--ccCcCEEEEeeeecCCceEEEEEec-CCcEEEEEcCC--CCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258 498 -NGAKQ--YIFE--GHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 498 -~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
+|+.. ..+. .|...+..++|++ +|+++++++. ++.|.+|+++. +...... ..+...+.+.
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~~~~~--- 243 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVIDPATHMPVYTH-------HSFPLIPPGI--- 243 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------EEEESSCTTC---
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEcc-------ceEEcCCCCc---
Confidence 77653 2333 2456788888764 5577777664 78999998764 2221100 0011011100
Q ss_pred ecccc-----CceeEEE-ecCCCCEEEEEecC-C-----cEEEEECC-CCceEEE---EccCCCCCCcCeEEECC---CC
Q 001258 570 QGFRK-----RSLGVVQ-FDTTKNRFLAAGDD-F-----SIKFWDMD-SVQLLTS---IDADGGLPASPRIRFNK---DG 630 (1113)
Q Consensus 570 ~~~~~-----~~i~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~ 630 (1113)
.++.. .....++ |+|+|++|+++..+ + .|.+|++. +++.... .... ...+..++|+| ||
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCC
Confidence 00000 0234455 66666677765532 2 89999996 5665432 2222 22467899999 89
Q ss_pred CEEEEEECC-CcEEEEEcCCC
Q 001258 631 CLLAVSTND-NGIKILATSDG 650 (1113)
Q Consensus 631 ~~l~~~~~d-g~i~iwd~~~~ 650 (1113)
++|++++.+ +.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998864 89999998765
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.5e-15 Score=173.27 Aligned_cols=162 Identities=9% Similarity=0.005 Sum_probs=108.3
Q ss_pred ceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCC-eeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 422 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
.+.+++|||||++|+.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 47788999999999887543 468889998886443 3333333 34489999999 68888888899999999
Q ss_pred CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
+++.......+.. |. ++|..|+..+.++...+|.. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~~--~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------WK--GYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------EE--EEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------cC--CCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 8876655554443 22 23356666555555555531 123455554
Q ss_pred eEEEecCCCCEEEEE-----ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258 578 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1113)
Q Consensus 578 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 638 (1113)
.++.. ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~ 208 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE 208 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec
Confidence 33332 3466899999998876655532 23577899999 7887776654
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.7e-14 Score=155.86 Aligned_cols=242 Identities=11% Similarity=0.117 Sum_probs=175.4
Q ss_pred CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec------CCCCCeeEEEEecCCCcEEEEEec-CCcEEEEE
Q 001258 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 888 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~s~~d~~~la~g~~-dg~v~iwd 888 (1113)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 455688999999999888776 7999999987 55555553 233568899995327777776643 88999999
Q ss_pred cccceeeeeec-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258 889 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 889 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l 967 (1113)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||.... ... .... .... ..+..++++++|..+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~--~~~~-~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLH--KFGC-SKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE--EEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEE--EeCC-CCcc---CCcEEEEECCCCCEE
Confidence 5677666664 34567899999999998888888899999997542 111 1110 0111 246899999999977
Q ss_pred EEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC-cEEEEecCCCceeeecCCCcccCCCccc
Q 001258 968 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1113)
Q Consensus 968 ~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~vwd~~~~~~~~~~~~~~~~~~gh~~ 1045 (1113)
++. .++.|.+||.. ++.+..+...++...+..++++++|+++++...++ .|.+|+. +++.+..+. .+..
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-------~~~~ 249 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-------SKVK 249 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-------ESSC
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-------ccCC
Confidence 774 68899999974 55555554334446789999999999888887776 9999995 466666554 2222
Q ss_pred CccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1046 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1046 ~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
...+..+++.| +|+++++ +.|++|++|++..
T Consensus 250 ~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 250 HAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred CCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence 22344688888 6776666 6799999999765
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.3e-14 Score=158.02 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=184.6
Q ss_pred CCCcEEEEEcCCCCeEEEEEecC------------------------CcEEEEecCCcceeEeeeeeeeccCCCCccccc
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1113)
-+.|.+++|+|+|+ ++++.+.+ ++|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36789999999998 57777766 4799999988876542
Q ss_pred ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeeee---------ecccCCeeEEEEcC-CCCeeEE
Q 001258 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV 482 (1113)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-~~~~~~l 482 (1113)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......|+|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 122445578999999999998888889999999986542 232 23 34555789999999 676 67
Q ss_pred EEec-CCCcEEEEeCCCCceeeEeecc----------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-
Q 001258 483 ITCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE- 550 (1113)
Q Consensus 483 ~s~s-~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 550 (1113)
++.+ .++.|++|| .+|+.+..+... ......+++.++ .+.++++...++.|++||..+++....+.
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 7775 689999999 678877777432 234788887643 25788888889999999998766665553
Q ss_pred -CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-CCCCCCcCeEEECC
Q 001258 551 -APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNK 628 (1113)
Q Consensus 551 -~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~ 628 (1113)
.....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+...+..++++|
T Consensus 237 ~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp TTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred cccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 2344566777776 32 1112333344445667999999999999888742 22344678999999
Q ss_pred CCCEEEEEECCCcEEEEEcCC
Q 001258 629 DGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 629 ~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
+|.++++...++.|++|++..
T Consensus 302 dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCc
Confidence 998888888899999998754
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=5.2e-13 Score=156.15 Aligned_cols=232 Identities=18% Similarity=0.137 Sum_probs=158.3
Q ss_pred eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEcc-
Q 001258 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH- 450 (1113)
Q Consensus 372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~- 450 (1113)
+++++...+++|.++|..+++.+... -. ...+..+.|||||+++.+++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i------------------~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVL------------------DT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE------------------EC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEE------------------eC--CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 46788888999999999999887641 11 2256799999999999999999999999996
Q ss_pred -CCceeeeeeeeecccCCeeEEEEc----CCCCeeEEEEecCCCcEEEEeCCCCceeeEeec----------cCc-CEEE
Q 001258 451 -GGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----------HEA-PVYS 514 (1113)
Q Consensus 451 -~~~~~~~~~~l~~h~~~V~~v~~s----~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~-~v~~ 514 (1113)
+++.+. ++... .....++|+ |||++ ++++...+++|.|+|..+.+.+.++.. |.. .+..
T Consensus 228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 766554 34332 246799999 69995 455556679999999999998887652 212 5666
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
+..++.. ..++++...+|.|.++|..+........ .... ....+.|+|++++++++.
T Consensus 303 i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~---------------------~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 303 ILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAER---------------------FLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCS---------------------SEEEEEECTTSCEEEEEE
T ss_pred EEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccc---------------------cccCceECCCCCEEEEEe
Confidence 6655432 3567777778999999987643221110 1111 223345566666666654
Q ss_pred -cCCcEEEEECCCCceEEEEcc-CCCCCCcCeEE-ECCCC-CEEEEEE-CCCcEEEEEcCCC
Q 001258 594 -DDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIR-FNKDG-CLLAVST-NDNGIKILATSDG 650 (1113)
Q Consensus 594 -~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~-~s~~~-~~l~~~~-~dg~i~iwd~~~~ 650 (1113)
.++.|.++|..+++.+..+.. ......-.... ++|++ ..++++. .++.|.+++..++
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 689999999999998877764 22111112334 47774 4444443 4578999987653
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1.2e-14 Score=160.46 Aligned_cols=251 Identities=14% Similarity=0.073 Sum_probs=183.4
Q ss_pred CCCccEEEEecCCCEEEEEe-C------------------------CeEEEEECCCCceeeeec-CCCCCeeEEEEecCC
Q 001258 818 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 871 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 871 (1113)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999888876664 3445789999999 8
Q ss_pred CcEEEEEecCCcEEEEEcccce-eeeee---------cccccCeEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCccccc
Q 001258 872 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 939 (1113)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~L~s~s-~D~~v~iwd~~~~~~~~~ 939 (1113)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999976432 45555 34556789999999 888888886 689999999543 22111
Q ss_pred cccccCCCC---CCCCCCCceEEEccC-CcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE--
Q 001258 940 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1012 (1113)
Q Consensus 940 ~~~~~~~~~---~~~~~~i~~~~~spd-g~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-- 1012 (1113)
......+. .........++++|+ |..+++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++
T Consensus 181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 00000000 000123688999999 5655553 67899999999999988887666778899999999 433333
Q ss_pred -----EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258 1013 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1013 -----~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
...+..|++|++.+++.+..+... .++...+. .++++| +|+++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~~~~p~--~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKHFDMPH--DIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS----SSCCSSEE--EEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCccCCee--EEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 334458999999999998876421 13333333 588888 6788899999999999998753
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=5.7e-15 Score=168.35 Aligned_cols=238 Identities=13% Similarity=-0.017 Sum_probs=153.3
Q ss_pred cEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 361 PMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
+.+++|||||++++++...+ ..|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 78899999999855555443 368888998876543 122222233347899999999999
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecccCCeeE-------------------EEEcCCCCeeEEEEe-----cCCCcEEEE
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW 494 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~~~~~~~l~s~-----s~d~~i~iw 494 (1113)
+.++.|.+||+.+++... ....+...... +.|+|+++. ++.. ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999887543 22223332222 456788874 3333 456789999
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCC-CCceEEEEEccCCCe
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR 567 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 567 (1113)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..++|+|+|+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~- 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS- 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence 99988765444 46777888888752 34556555443 35888887654332222211 22345556666555
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC---
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--- 638 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~--- 638 (1113)
+|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence 45554432 449999998887654433221 22 89999 9998887653
Q ss_pred -------------CCcEEEEEcCCC
Q 001258 639 -------------DNGIKILATSDG 650 (1113)
Q Consensus 639 -------------dg~i~iwd~~~~ 650 (1113)
++.|++||+.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ---------CCCCCCEEEEEETTTT
T ss_pred eeeccccccccCCCCcEEEEecccC
Confidence 356888887665
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=6.6e-13 Score=155.30 Aligned_cols=328 Identities=14% Similarity=0.096 Sum_probs=211.0
Q ss_pred eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC--CCCCeeeeeCCCCceE
Q 001258 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCT 557 (1113)
Q Consensus 480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~ 557 (1113)
+++++...+++|.++|..+++.+.++... ..+..+.++ ++|+++++++.|+.|.+||+. +.+....+.. +....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888889999999999999999888743 345677754 567899999999999999995 5554444443 23345
Q ss_pred EEEEc----cCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCC---------CCCcCe
Q 001258 558 TMAYS----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPR 623 (1113)
Q Consensus 558 ~~~~s----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~ 623 (1113)
.++++ |||+ +++++. .++.|.++|..+.+.+..+...+. ...+..
T Consensus 244 ~ia~s~~~~pDGk---------------------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 244 SIETSKMEGWEDK---------------------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp EEEECCSTTCTTT---------------------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred eeEEccccCCCCC---------------------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 56666 4555 555544 579999999999998887753321 012334
Q ss_pred EEECCCCCEEEE-EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccC
Q 001258 624 IRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 702 (1113)
Q Consensus 624 ~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1113)
+..++++..++. ...+|.|.++|..+..
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--------------------------------------------------- 331 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLN--------------------------------------------------- 331 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSS---------------------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCc---------------------------------------------------
Confidence 444544332222 2223444444432210
Q ss_pred CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258 703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1113)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1113)
.+.+..+.
T Consensus 332 -----------------------------------------------------------------------~~~v~~i~- 339 (567)
T 1qks_A 332 -----------------------------------------------------------------------NLKTTEIS- 339 (567)
T ss_dssp -----------------------------------------------------------------------EEEEEEEE-
T ss_pred -----------------------------------------------------------------------cceeeeee-
Confidence 00000000
Q ss_pred cccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecC---
Q 001258 783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP--- 857 (1113)
Q Consensus 783 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~--- 857 (1113)
.......+.|+|+|++++++. +++|.++|+.+++.+..+..
T Consensus 340 ----------------------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 340 ----------------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp ----------------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred ----------------------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 122345678999999988776 68999999999887766543
Q ss_pred --CCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEeC-----
Q 001258 858 --PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----- 922 (1113)
Q Consensus 858 --~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~----- 922 (1113)
|.+.-..+ ++|+++.+.+++. .++.|.++|..+ .+.++++......-..+.++|++++|.+...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 32212222 5773355555553 468999999987 6777887765444455789999999988663
Q ss_pred --CCcEEEEeCCCCcc---ccc-cccccC--CCCCCCCCCCceEEEccCCcEEEEE------cCCeEEEEeCCccceeec
Q 001258 923 --DSQLCVWSSDGWEK---QKN-RFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQ 988 (1113)
Q Consensus 923 --D~~v~iwd~~~~~~---~~~-~~~~~~--~~~~~~~~~i~~~~~spdg~~l~~~------~d~~v~v~d~~~~~~~~~ 988 (1113)
..+|.++|+.+.+. ... ..+.+. .+.......+..+.|+|+|+++.++ .++.|.|+|.++++.+..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 35899999987511 100 111110 0000011367899999999998874 268999999999998777
Q ss_pred cc
Q 001258 989 WV 990 (1113)
Q Consensus 989 ~~ 990 (1113)
+.
T Consensus 545 i~ 546 (567)
T 1qks_A 545 IK 546 (567)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.1e-14 Score=178.23 Aligned_cols=335 Identities=9% Similarity=-0.002 Sum_probs=197.4
Q ss_pred eeecccCCeeEEEEcCCCCeeEEEEe--cCCCcEEEEeCCCCceeeEeeccCcCEE---------EEeeeecCCceE-EE
Q 001258 460 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF 527 (1113)
Q Consensus 460 ~l~~h~~~V~~v~~s~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 527 (1113)
.+.+|...|..++|++++- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567899999999997654 67777 6788999999765666677777766655 555554467777 66
Q ss_pred EEec-CCcEEEEEcC--CCCCeeeeeC-----CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC----
Q 001258 528 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---- 595 (1113)
Q Consensus 528 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 595 (1113)
.++. +..|.+|++. .......+.. +...+..++|+|||+ .|++++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~ 154 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE 154 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence 5543 5566666654 1023333333 233455555555555 67766655
Q ss_pred ------CcEEEEECCC------CceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCC--------cEEEEEcC-CCcc-
Q 001258 596 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR- 652 (1113)
Q Consensus 596 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~- 652 (1113)
..|++||+.+ ++.. .+. .+ ...+..++|+|||++|+.++.++ .|++||+. ++..
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999988 5543 333 22 23578899999999999887553 57777766 3310
Q ss_pred ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1113)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1113)
....+.
T Consensus 232 ~~~~l~-------------------------------------------------------------------------- 237 (662)
T 3azo_A 232 DTRTLL-------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ccEEeC--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1113)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 812 (1113)
..+...+..+.|+|||+.++++..++...||.+. ..++.......
T Consensus 238 ---------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l~~ 282 (662)
T 3azo_A 238 ---------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQLCR 282 (662)
T ss_dssp ---------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEESSC
T ss_pred ---------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeeccc
Confidence 0134567889999999966666667744444332 11221111000
Q ss_pred C-----CCCCCCCccEEEEecCCCEEEEEeCCeEEEE--ECCCCceeeeecCCCCCeeEE-EEecCCCcEEEEEecCC--
Q 001258 813 T-----DSNPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS-- 882 (1113)
Q Consensus 813 ~-----~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~s~~d~~~la~g~~dg-- 882 (1113)
. ...-...+..++|++++++++++.++.++|| |+.+++ +..+..+...+..+ +++. +.-++++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence 0 0000112567899999999988876777777 555554 67777777777766 4443 223333444443
Q ss_pred cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 883 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 5666677777654444455444443344433333443333345655544
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.2e-13 Score=147.08 Aligned_cols=248 Identities=14% Similarity=0.165 Sum_probs=172.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE-cCCCCeE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF 435 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 435 (1113)
+-..+.+++++++|+ ++++.+.++.|.+||.. ++.+..... .....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence 456789999999998 68888889999999987 544332100 0001245567899999 5778777
Q ss_pred EEEeC-CCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee--ccCcC
Q 001258 436 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 511 (1113)
Q Consensus 436 as~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~ 511 (1113)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 77643 78999999 4555444 232 3456789999999998 7788788899999995 566666664 34566
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
+..+++++ +|.++++...++.|++||... .....+..... ......++++++++.+++
T Consensus 166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 88888654 567788888899999999743 33333322210 012334555555556677
Q ss_pred EecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66675 9999995 5677777765543334668999999987777 67899999987543
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=5.4e-10 Score=139.11 Aligned_cols=544 Identities=10% Similarity=0.089 Sum_probs=308.8
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
...|.++...++|.. -.|+.+ -+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGRV--WIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSCE--EEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCCE--EEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 467999999999983 345554 488999877653221 000 0000011888988888877665
Q ss_pred EeCCCeEEEEEccCCceeeeeeeee-cc-cCC-eeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEE
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLEID-AH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY 513 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~l~-~h-~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 513 (1113)
. .+ .|..||..+++... +. ++ ... |.++...+++. +..++.++.|..||..+++..... ..+...|.
T Consensus 148 t-~~-gl~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 148 T-PE-GLIMFDIKESKFID----DSFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQ 218 (795)
T ss_dssp E-TT-EEEEEETTTTEEEC----SSSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEE
T ss_pred E-CC-ceEEEECCCCEEEe----ccCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeE
Confidence 4 34 48899987764322 11 11 123 88898888886 334555556889998776643321 12345687
Q ss_pred EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--------CCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
++... .++. +..|+.++-|..||..+.... .+.. ....|.++...++|
T Consensus 219 ~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g-------------------- 274 (795)
T 4a2l_A 219 AILQQ--SPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQN-------------------- 274 (795)
T ss_dssp EEEEE--ETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTS--------------------
T ss_pred EEEEc--CCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCC--------------------
Confidence 77643 3444 555555545888887653322 1111 12234444444444
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1113)
. +..|+.+ -|.+||..+++........ -....|.++...++|.+.+ |+.++-|..|+..++. +..+...
T Consensus 275 -~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~--~~~~~~~ 348 (795)
T 4a2l_A 275 -R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNR--FKNIRNI 348 (795)
T ss_dssp -C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGS--SEEECCC
T ss_pred -C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCccc--ceEEcCC
Confidence 3 5556655 5889998776544332111 0124578888888887554 6666778888754431 1111000
Q ss_pred cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1113)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1113)
..
T Consensus 349 ~~------------------------------------------------------------------------------ 350 (795)
T 4a2l_A 349 PY------------------------------------------------------------------------------ 350 (795)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred eecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1113)
Q Consensus 741 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 820 (1113)
........|.++...++|.. -.++.++-+..|+.....+. .+....+.. ...-....
T Consensus 351 -----~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~ 407 (795)
T 4a2l_A 351 -----KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNN 407 (795)
T ss_dssp -----SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSC
T ss_pred -----CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCcc
Confidence 00012356888888888884 44666656776665432211 000000000 00002456
Q ss_pred ccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1113)
|.+++..++|+.|-+|. ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +.+.+||..+++..
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEE
Confidence 89999999998444455 6889999988766433221 1235688888887 666555 444 45889998876543
Q ss_pred eeec------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 896 SKLK------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 896 ~~l~------~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
.... -+...|.++...++|++.+... + -|..||..++.. . ..............|.++...++|...+.
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 3221 1236799999999998777654 4 488899876442 1 11000000011135788888899987766
Q ss_pred EcCCeEEEEeCCccceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC-c
Q 001258 970 VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN-V 1047 (1113)
Q Consensus 970 ~~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-v 1047 (1113)
+.. .+..||..+++....-...+ ....|.++...++|.+.+++ ++-|..|+..+++.. .+.... |.... .
T Consensus 560 T~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~d----Gl~~~~f 631 (795)
T 4a2l_A 560 TRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESD----GLQSNQF 631 (795)
T ss_dssp ESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGG----TCSCSCE
T ss_pred eCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcC----CCccccC
Confidence 554 78899987765543211111 14568999999999876655 345778898876543 333111 22221 1
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258 1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus 1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
..-++...+ +|++++ |+.+| +..++...-
T Consensus 632 ~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~~ 660 (795)
T 4a2l_A 632 NTASYCRTS-VGQMYF-GGING-ITTFRPELL 660 (795)
T ss_dssp EEEEEEECT-TSCEEE-EETTE-EEEECGGGC
T ss_pred ccCceeECC-CCeEEE-ecCCc-eEEEcHHHc
Confidence 111233334 665544 55565 666776543
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.61 E-value=7.1e-14 Score=171.13 Aligned_cols=243 Identities=9% Similarity=-0.014 Sum_probs=159.7
Q ss_pred eccCCCCcEEEEEcCCCCeEEEEE--ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE-------
Q 001258 354 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 424 (1113)
Q Consensus 354 ~~~h~~~V~~~~~spdg~~ll~~g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------- 424 (1113)
..+|...|..++|++++-+ ++.+ +.++...||....+.... .+..|...+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 3458899999999988653 5555 457889999965443332 1344444444
Q ss_pred --EEEEc--CCCCe-EEEEeC-CCeEEEEEcc--C-Cceeeeeeeeec-----ccCCeeEEEEcCCCCeeEEEEecCC--
Q 001258 425 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 488 (1113)
Q Consensus 425 --~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s~d-- 488 (1113)
...|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 55565 99999 776654 4556666665 3 43 32 3444 677899999999999 57766665
Q ss_pred --------CcEEEEeCCC------CceeeEee-ccCcCEEEEeeeecCCceEEEEEecCC--------cEEEEEcC-CCC
Q 001258 489 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG 544 (1113)
Q Consensus 489 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~-~~~ 544 (1113)
..|++||+.+ ++ ...+. .+...+..++|+ +||++|+.++.++ .|++||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 44 45555 556667667765 5668888777553 79999998 341
Q ss_pred --Ceee-eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC--cEEEEECCCCceEEEEccCCCC-
Q 001258 545 --SRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 618 (1113)
Q Consensus 545 --~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 618 (1113)
.... ...+...+..+.|+||| +.++++..++ .|++||..+++.......+...
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg---------------------~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDG---------------------SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTS---------------------CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCceEcceEECCCC---------------------eEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 2222 22223445555555555 4566677777 6777777677654433322111
Q ss_pred -----CCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 619 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 619 -----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
..+.+++|+|+++++++++. +.++||.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 01567899999999999998 99999944
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.59 E-value=1.1e-09 Score=136.24 Aligned_cols=546 Identities=10% Similarity=0.067 Sum_probs=314.5
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
...|+++.-.++|. |=.|+.+| +..||-. .. +.+...... . ..-....|.++...++|.+.+.
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~f-----~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWig 104 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---AF-----TVYQHNEDD----P--NSIANDISRIVKTDSQGRVWIG 104 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSS---CE-----EEECCCTTC----T--TSCSCSCEEEEEECTTSCEEEE
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCC---ce-----EEEeCCCCC----C--CcccccceeEEEECCCCCEEEE
Confidence 46799999999997 33556665 5666632 21 122110000 0 0012357999999999877654
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeeccc----CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc-CcC-
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 511 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~- 511 (1113)
+.+| +..||..+++... +.... ..|.++...++|. +.+. +. +.|.+||..+++......++ ...
T Consensus 105 -T~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 105 -TRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp -ESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEE-ET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred -eCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEE-EC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 4455 8999988765322 22111 1288999988887 3443 33 45889997766533211111 123
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
|.++... .++. +..++.++-|..|+..+....... ......|.++...+++ . +.
T Consensus 175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---------------------~-lw 229 (795)
T 4a2l_A 175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---------------------R-IW 229 (795)
T ss_dssp CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---------------------E-EE
T ss_pred eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---------------------C-EE
Confidence 7777643 3444 555666555888887654322111 0112234444433333 3 55
Q ss_pred EEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1113)
.++.++-|.+||..+++........ -....|.++...++|.+.+. +.+ -|.+|+..++ .. ..+......
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~-~~-~~~~~~~~~-- 303 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTD-SF-ASYSSNPVE-- 303 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTT-EE-EEECCCTTS--
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCC-eE-EEEecCCCC--
Confidence 5665556899998776544332111 01245788888888886664 444 5888887655 11 111000000
Q ss_pred ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1113)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1113)
T Consensus 304 -------------------------------------------------------------------------------- 303 (795)
T 4a2l_A 304 -------------------------------------------------------------------------------- 303 (795)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1113)
Q Consensus 746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~ 825 (1113)
+.......|.++...++|... .++.++-+..|+.....+. .+..... ...-....|.+++
T Consensus 304 ~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~------------~~~~~~~-------~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 304 NGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFK------------NIRNIPY-------KNSLSDNVVSCIV 363 (795)
T ss_dssp TTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSE------------EECCCTT-------SSSCSCSSEEEEE
T ss_pred CCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccce------------EEcCCCC-------CCCCCCCeeEEEE
Confidence 000134568899999999844 4555556666665432221 1110000 0000345689999
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeeecC--------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
.+++|.+.+...++.|..|+..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99999877655577899999887654332211 235688998887 777566688878899999887764332
Q ss_pred ec----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258 898 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1113)
Q Consensus 898 l~----~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~ 973 (1113)
.. .+...|.++...++|++.+... +| |.+||..+++....... ..........|.++...++|...+.+. +
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 21 2346799999998888776554 44 88999877543211100 000011114678888999998777766 7
Q ss_pred eEEEEeCCccceeecccc-----CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc
Q 001258 974 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~ 1048 (1113)
.+..|+..+++. . +.. ......|.++..+++|.+.++.. . -+..||..+++.. .+.....++ ...|.
T Consensus 518 Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~---~~~i~ 589 (795)
T 4a2l_A 518 GLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLP---NNVVY 589 (795)
T ss_dssp CEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCS---CSCEE
T ss_pred ceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCc---hhheE
Confidence 799999877665 2 210 01245789999999998665443 4 5788998776543 332111121 12343
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
++...+ +|++.+++ ++.|..|+..+++
T Consensus 590 --~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 590 --GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp --EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred --EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 244444 56665554 4567888877654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=3.9e-13 Score=149.90 Aligned_cols=220 Identities=10% Similarity=0.068 Sum_probs=152.0
Q ss_pred CccEEEEecCCCEEEEEe-C---Ce--EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC------------
Q 001258 820 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------ 881 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d------------ 881 (1113)
.+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999876 2 33 888898887765544433 3 89999999 88888877642
Q ss_pred ---------------CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccc
Q 001258 882 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 939 (1113)
Q Consensus 882 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-------~v~iwd~~~~~~~~~ 939 (1113)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999998887455554 3 78999999999 887776542 4455555433221
Q ss_pred cccccCCCCCCCCCCCceEEEccCCcEEEE-EcC--------CeEEEEeCCccceeeccccCCCCCCeeE-EEECCCCCE
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1009 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~ 1009 (1113)
.+ ..+ ..+. .++|||++|+. +.+ ..|.+|| +++...... +|...+.. +.|+ |+ +
T Consensus 212 -~l--~~~-----~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KM--FEK-----VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EE--EEE-----ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred -Ee--ccC-----ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence 11 111 1223 33999998887 433 3688888 555443332 55678886 9999 88 8
Q ss_pred EEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcE-EEEecc
Q 001258 1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1077 (1113)
Q Consensus 1010 l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v-~vW~~~ 1077 (1113)
+++++.++.++|| +.+++....+ .+.+.|. .++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~--------~~~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIA--------KGRHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEE--------CSSSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEe--------cCCCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 8999999999999 8866553322 2234454 367777 577887777765 788776
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=9.1e-13 Score=143.04 Aligned_cols=243 Identities=10% Similarity=0.079 Sum_probs=166.6
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
....+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++++|+|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCC
Confidence 334467778999999999977889999999999999876 22 133456689999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEE----ec-------------CCCcEEEE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW 494 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s----~s-------------~d~~i~iw 494 (1113)
+++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..+
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence 9888877778999999988764332111111 123578899999998 6676 33 12455555
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEe
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
+.. ++ +..+..+......++|++ ++..+++.+.++.|.+|++...... ..+....
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----------------- 217 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP----------------- 217 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS-----------------
T ss_pred CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC-----------------
Confidence 544 44 445555667788888754 5567788888899999998732222 1111111
Q ss_pred ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCC
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
.....++++++|+.+++. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 218 ----~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 218 ----GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp ----SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred ----CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 123345666666645544 8899999986 777777765532 789999 68999999988763 44445544
Q ss_pred C
Q 001258 650 G 650 (1113)
Q Consensus 650 ~ 650 (1113)
.
T Consensus 287 ~ 287 (296)
T 3e5z_A 287 R 287 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=8.1e-13 Score=147.30 Aligned_cols=222 Identities=11% Similarity=0.112 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCCCeEEEEEe--------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258 359 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1113)
..+...+| ||++++.+.. .++.|.+||+.+++... + ..+..++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45677788 9997555432 25679999998876432 2 3688999999
Q ss_pred CCCeEEEEeCC---C--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------------------
Q 001258 431 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 487 (1113)
Q Consensus 431 dg~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------------------ 487 (1113)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988654 3 47888888876543 223334 999999999995 554442
Q ss_pred ---------CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCC-------cEEEEEcCCCCCeeeeeC
Q 001258 488 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 551 (1113)
Q Consensus 488 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 551 (1113)
...|.+||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.+++ .....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence 25799999998887555554 3 67777776 566 777776542 445555442 22222221
Q ss_pred CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC--------CcEEEEECCCCceEEEEccCCCCCCcCe
Q 001258 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 623 (1113)
Q Consensus 552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 623 (1113)
+ ..+. .++|+|++|+.++.+ ..|++|| +++.......+ ...+..
T Consensus 216 ~-~~~~-----------------------~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~ 267 (347)
T 2gop_A 216 K-VSFY-----------------------AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ 267 (347)
T ss_dssp E-ESEE-----------------------EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred C-ccee-----------------------eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence 1 1111 125555567666533 4688888 55543333222 235665
Q ss_pred -EEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 624 -IRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 624 -~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.|+ |+ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8999 88 88899999999999 7643
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=1.2e-12 Score=160.88 Aligned_cols=247 Identities=10% Similarity=-0.012 Sum_probs=163.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
|...+..++|||||++|+++.+.+| +|++||+.+++.+.. .+.. ..+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4446889999999997444444344 899999999987642 0111 136779999999
Q ss_pred CeEEEEeCCCe----------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecC-----CCc
Q 001258 433 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 490 (1113)
Q Consensus 433 ~~las~~~d~~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~ 490 (1113)
+.|+.++.++. |++|++.+++.. ........|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988765 999999887632 111122235666889999999995 444332 678
Q ss_pred EEEEeCCC------Cc-eeeEeeccCcCEEEEeeeecCCceEEEEEec-C---CcEEEEEcCCCCC--eeeeeCCCC--c
Q 001258 491 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-D---GKIKAWLYDNLGS--RVDYEAPGR--W 555 (1113)
Q Consensus 491 i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~--~ 555 (1113)
|++||+.+ +. ....+..+...+... |+++ |..|+..+. + +.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEE--TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eecc--CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999987 53 466777776666553 4443 345544443 2 3699999876542 122322222 3
Q ss_pred eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc--EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE
Q 001258 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633 (1113)
Q Consensus 556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 633 (1113)
+..++++ +++..+++...++. |++|++.+++.+..+..+ ...+..++++|++..+
T Consensus 338 ~~~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 338 LEWVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEI 394 (710)
T ss_dssp EEEEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEE
T ss_pred EEEEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEE
Confidence 4444444 33345677777774 667787778877777655 3467788999998766
Q ss_pred EEEE----CCCcEEEEEcCCCc
Q 001258 634 AVST----NDNGIKILATSDGI 651 (1113)
Q Consensus 634 ~~~~----~dg~i~iwd~~~~~ 651 (1113)
+... ..++|..||+.++.
T Consensus 395 ~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEeCCCCCCEEEEEECCCCc
Confidence 6442 24689999998873
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=1.2e-12 Score=139.25 Aligned_cols=253 Identities=11% Similarity=0.045 Sum_probs=182.8
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCe
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 905 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V 905 (1113)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456778877 8999999999999999988766 4789999999 888888 45788999998 899998887653 478
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCcc
Q 001258 906 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 983 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~ 983 (1113)
.++.+.+||+++++.+. ++.|..+|.+ ++........ .+..........+++.++|.++++. .++.|.+||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 7777777763 3322211111 1100001234567889999999985 68999999998 9
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
+.+..+.. ...+.++.+.++|.++++++.+++|..+|..+|+.+.++..... + +. .-..+..+...+ +|++++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-~~-~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-GV-QLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-SC-CCSEEEEEEECT-TSCEEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-Cc-cccccccceEcC-CCCEEE
Confidence 98888764 24567788899999999998888999999999999988752111 1 10 011222355556 788887
Q ss_pred EEeCC--------CcEEEEec-cCCCccccCCCCCCCCCCCC
Q 001258 1064 LGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1096 (1113)
Q Consensus 1064 s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1096 (1113)
+.... +..++.++ ++|+..|......+-|.+++
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 76421 24467777 57777888776666665554
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=3.5e-11 Score=130.66 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=189.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....+.+++++++|+.+++...++.+.+|+.. . ......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-G----------------------KITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-C----------------------CeEEecCCc--ccCceeeEEECCC
Confidence 44678999999999977766667888888653 1 111111111 3456889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-ecccccCeE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT 906 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~ 906 (1113)
|+++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7889999986 3321 22223455789999999 7888887777889999998 5544322 233456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~ 985 (1113)
++++.++|+++++...++.|..||. +++... ...... ...+..++++++|..+++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999998888777888999998 543321 111111 1246789999999977665 4788999999 6664
Q ss_pred eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
.. +....+...+.+++++++|++.++...++.|.+||. +++.. .+. .+ ++...+. .+++ + +|++.++.
T Consensus 216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~-~~~~~~~--~i~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQ-IKSAEPH--GICF-D-GETIWFAM 283 (299)
T ss_dssp EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CS-SSSCCEE--EEEE-C-SSCEEEEE
T ss_pred EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CC-CCCCccc--eEEe-c-CCCEEEEe
Confidence 33 322334567999999999997766657889999998 45432 322 11 2223344 4566 5 67776665
Q ss_pred eCCCcEEEEeccCCC
Q 001258 1066 LSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1066 ~~Dg~v~vW~~~~~~ 1080 (1113)
. .+.|..+++.+++
T Consensus 284 ~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 E-CDKIGKLTLIKDN 297 (299)
T ss_dssp T-TTEEEEEEEC---
T ss_pred c-CCcEEEEEcCccc
Confidence 4 6778888877653
No 187
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=9.8e-12 Score=135.53 Aligned_cols=205 Identities=11% Similarity=0.081 Sum_probs=142.8
Q ss_pred CccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee
Q 001258 820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1113)
....++++|||++++++. ++.|.++|+.+++.+.++.... + ...+.. +.+.+++.+.||.+.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence 456789999999888775 4789999999999988885322 1 233433 667777888899999999876 5543
Q ss_pred eeecccc----cCeE-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEEccC
Q 001258 896 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 896 ~~l~~h~----~~V~-~l~~s-~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~spd 963 (1113)
.....+. .++. ...|. ++|++++ .+.+++|.+.|+.+............ .+-.+ .....++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCC
Confidence 2221121 2222 24554 6775555 66689999999976542111111100 11111 24456888999
Q ss_pred CcEEEEEc-----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCcee
Q 001258 964 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLR 1030 (1113)
Q Consensus 964 g~~l~~~~-----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~ 1030 (1113)
++.+++.. ...|.++|+.+++.+..+.. ...+.+++|++|++ +|++.. .++.|.|+|..+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99988842 14699999999999999876 34788999999997 677655 4899999999999999
Q ss_pred eecC
Q 001258 1031 CRIN 1034 (1113)
Q Consensus 1031 ~~~~ 1034 (1113)
.++.
T Consensus 368 ~~i~ 371 (386)
T 3sjl_D 368 RSVN 371 (386)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8886
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.52 E-value=7.8e-13 Score=162.62 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=167.6
Q ss_pred CCCCccEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc-------
Q 001258 817 PEEAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------- 883 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~------- 883 (1113)
+...+..++|||||++|+.+. +| +|++||+.+++.......+ ..+..++|+| ||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 334578899999999999876 23 8999999998876533222 2367899999 8999998887765
Q ss_pred ---------EEEEEcccce----eeeeecccccCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cccccc
Q 001258 884 ---------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGA-----DSQLCVWSSDG------WEKQKN 939 (1113)
Q Consensus 884 ---------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-----D~~v~iwd~~~------~~~~~~ 939 (1113)
|++|++.+++ ++.....|...+.++.|||||++|+.++. +..|++||+.+ +... .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence 9999998865 22233335666889999999999988765 56899999976 3211 1
Q ss_pred cccccCCCCCCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEE
Q 001258 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
..+. .+. ..+ ...|+|+|..|+. +. ...|.+||+.++.. ...+..+.....+..++|++++.++++
T Consensus 280 ~~l~---~~~---~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 280 VKLI---DNF---EGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp EEEE---CSS---SSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred EEee---CCC---CcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 1111 111 122 2358999998887 33 23699999988742 233332111236888999988888899
Q ss_pred EeCCCc--EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE-EEeC---CCcEEEEeccCCC
Q 001258 1013 CFLDAT--VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA-LGLS---DGGVHVFEPLESE 1080 (1113)
Q Consensus 1013 ~~~Dg~--v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~-s~~~---Dg~v~vW~~~~~~ 1080 (1113)
...|+. |++|++.+++....+. .+.+.+. .+.++| ++..++ +.+. .++|+.||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~-------~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFP-------LEVGSVV--GYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEC-------CCSSEEE--EEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecC-------CCCceEE--EEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 988985 5667776787766665 3334444 367777 555554 3332 4789999998877
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=3e-12 Score=141.71 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=133.2
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~ 500 (1113)
..|.+++|++++..++..+.++.++.| .++.+. .+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 357888999999888888888999999 233333 5667777889999999998 77788889999999998887
Q ss_pred eeeEeeccCcCEEEEeeeecCCceEEEEEecC----CcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEecccc
Q 001258 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
.......+...+.+++++ ++|.++++...+ +.|.+||..+......+. .....+..++++++|
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g--------- 146 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG--------- 146 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---------
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC---------
Confidence 665554567789999875 455677776666 689999987655432222 122334445555444
Q ss_pred CceeEEEecCCCCEEEEEec------CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEc
Q 001258 575 RSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILAT 647 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~ 647 (1113)
+.+++... .+.|..||..+++....... ...+..++|+|+++.++++ +.++.|.+|+.
T Consensus 147 ------------~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 147 ------------GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp ------------CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred ------------CEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 44544432 35677777665554433221 1246789999999866544 45678888887
Q ss_pred C
Q 001258 648 S 648 (1113)
Q Consensus 648 ~ 648 (1113)
.
T Consensus 212 ~ 212 (333)
T 2dg1_A 212 E 212 (333)
T ss_dssp C
T ss_pred c
Confidence 5
No 190
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=4e-08 Score=122.00 Aligned_cols=607 Identities=11% Similarity=0.087 Sum_probs=318.9
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
...|+++.-..+|. |=.|+.+| +..||-.+ . +.+.... .. .. ...-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~-~~-~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEE-QS-SS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCS-SC-SS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCC-CC-Cc--cccccccccceEEEcCCCCEEEE
Confidence 46799999999997 44455665 66677432 1 1221100 00 00 00011346999999988883445
Q ss_pred EeCCCeEEEEEccCCceeeeeee-eec---ccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCceeeEeec----
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---- 507 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---- 507 (1113)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence 66674599999987653221000 000 123688888887 665 4445545568889977665432 221
Q ss_pred --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
....|.++.. +.++ .|..++.++-|..||..+.... .+..... .. .......+..+..+++
T Consensus 159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~~---~~l~~~~i~~i~~d~~ 221 (781)
T 3v9f_A 159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHDPQ----------NP---NSLPGNDVRCIYKDTN 221 (781)
T ss_dssp TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTT
T ss_pred CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecCCC----------Cc---ccCCCCceeEEEEcCC
Confidence 1245777764 3344 4555666656888887653221 1110000 00 0000112334444444
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1113)
+. |..++.+ -+.+||..+++........ -....|.++...++|.+.+ |+..+-|.+++..++. .. .+...
T Consensus 222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~-~~~~~ 296 (781)
T 3v9f_A 222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQ-FL-LPEQI 296 (781)
T ss_dssp CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------
T ss_pred CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCe-ee-eeecc
Confidence 44 5555555 6889998776543221111 1124588888888887554 5665678888876652 11 11100
Q ss_pred cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1113)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1113)
............ .+ ..-.-..........+-.|..++-+..++..... +
T Consensus 297 ~f~~~~~~~~~~-~l--------------------------~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~----~ 345 (781)
T 3v9f_A 297 RFEFIREGDNNY-SL--------------------------SNASARYIFQDSFNNIWIGTWGGGINFISNAPPT----F 345 (781)
T ss_dssp -CEEECBCSSTT-SB--------------------------SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS----C
T ss_pred ccccccCCCCCC-CC--------------------------CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc----c
Confidence 000000000000 00 0000000001112334455555666666654321 1
Q ss_pred eeccc------CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258 741 RSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1113)
Q Consensus 741 ~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 814 (1113)
..+.. ........|.++...++|... .++.++-+..|+.....+.. +. . ..
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~------------~~--~--------~~ 402 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY------------NK--E--------NR 402 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC------------C--------------
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE------------cc--C--------CC
Confidence 11110 111234679999999888844 55555556667654321110 00 0 00
Q ss_pred CCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 815 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
......|.+++..++|.+.+...++.|..++..+++...... .....|.++...+ ++.+.+ |+. +.|..||..++
T Consensus 403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence 013467889999888887765446789999987765432221 1345688888877 665444 555 56889998876
Q ss_pred eeeeeeccc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258 893 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 893 ~~~~~l~~h-----~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l 967 (1113)
+........ ...|.++...++|++.+....+| |..||..+++... .....+ .....|.++...++|...
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEE
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEE
Confidence 543322222 46799999999988776544355 7888877643221 111111 122467888888999877
Q ss_pred EEEcCCeEEEEeCCccceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258 968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus 968 ~~~~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
+.+.+|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+.... |....
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~d----Gl~~~ 626 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSN----NIPQG 626 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGG----TCCSS
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccC----Ccccc
Confidence 77664444889987765432211111 1356889999998876655 4455 777888766543 333111 22222
Q ss_pred cc-ceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1047 VH-PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1047 v~-~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
.. .-++...+ +|.+ ..|+.+| +..++...
T Consensus 627 ~f~~~~~~~~~-~G~l-~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDH-NGLI-YFGSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECT-TSCE-EEEETTE-EEEECSCC
T ss_pred ccccCceEECC-CCEE-EEECCCc-eEEEChhh
Confidence 11 11233333 6654 4455666 66777654
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=4.7e-13 Score=164.04 Aligned_cols=241 Identities=12% Similarity=0.041 Sum_probs=161.7
Q ss_pred CCCCccEEEEecCCCEEEEEe------CCeEEEEECCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEecCCc------
Q 001258 817 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------ 883 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~------ 883 (1113)
|...+.+++|||||++||.+. +.+|++||+.+++.+ .... .......++|+| ||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 455688999999999999653 257999999998865 2111 111126899999 8899998888765
Q ss_pred -------EEEEEcccce----eeeeecccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCC
Q 001258 884 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR 948 (1113)
Q Consensus 884 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1113)
|++|++.+++ ++.....|...+.++.|||||++|+.++.++ .|++|+..+++. ..+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~-- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV-- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence 9999998765 3444445667889999999999999887666 677776544322 1111111
Q ss_pred CCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEE
Q 001258 949 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1113)
Q Consensus 949 ~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~v 1021 (1113)
..+....+ ++|. ++. +. ++.|.+||+.+++. ...+....+...+..++|+ ++.++++...|+..+|
T Consensus 272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 13445555 6777 555 43 47899999988753 2233322225568889998 7788899999999888
Q ss_pred EecC-CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE-EEe---CCCcEEEEeccCCC
Q 001258 1022 FSAA-NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1080 (1113)
Q Consensus 1022 wd~~-~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~-s~~---~Dg~v~vW~~~~~~ 1080 (1113)
|.++ +++....+.. ...+.+.. ++++| |+..++ +.+ ..++|++||+.+++
T Consensus 345 ~~~~~~g~~~~~l~~------~~~~~v~~--~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKGKPVRTVQL------PGVGAASN--LMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTCCEEEECCC------SSSSEECC--CBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeCCCCeeEEecC------CCCeEEEE--eecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8665 4555544431 11333443 56677 566655 332 34789999999887
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=4.1e-12 Score=139.65 Aligned_cols=273 Identities=10% Similarity=0.011 Sum_probs=183.6
Q ss_pred CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1113)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~ 801 (1113)
.+++|.++|..+.+......... ...........+++. +++.+++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~-------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN-------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc--------------------
Confidence 47889999987644322211000 001122345677774 34445555567889888765
Q ss_pred CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-----CCeeEEEEecCCCcEE
Q 001258 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII 875 (1113)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 875 (1113)
+++.+... . ....+..++++++++..++.. ++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 --t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 --TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33332211 1 235678899999996555553 8999999999988877665333 14566777 3 66666
Q ss_pred EEEe-cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCcccccccccc
Q 001258 876 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI 944 (1113)
Q Consensus 876 a~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D----------~~v~iwd~~~~~~~~~~~~~~ 944 (1113)
++.. .++.|.+||+.+++.+..+... .....++++++|++++++..+ +.|.+||..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999888777643 345789999999988777655 789999998865432 1222
Q ss_pred CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEE----eCCCcE
Q 001258 945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYAC----FLDATV 1019 (1113)
Q Consensus 945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~----~~Dg~v 1019 (1113)
..+ .....++|+||+++++++.. .|.+||..+++.........+......++++|++.. .++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 24689999999999988755 999999998886532222122467899999995554 4454 468899
Q ss_pred EEEecCCCceeeecC
Q 001258 1020 CVFSAANLKLRCRIN 1034 (1113)
Q Consensus 1020 ~vwd~~~~~~~~~~~ 1034 (1113)
.+||.+ ++.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88887775
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=2.2e-12 Score=141.87 Aligned_cols=238 Identities=11% Similarity=0.114 Sum_probs=168.6
Q ss_pred CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345667774 334444444 7999999999999988885 345688999998 676555554789999999999988776
Q ss_pred ecccc-----cCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-
Q 001258 898 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 970 (1113)
Q Consensus 898 l~~h~-----~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~- 970 (1113)
+.... .....+++ .+++.+++.. .+++|.+||+.+++.... +. .+ .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~--~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LT--IG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EE--CS-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EE--cC-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567777 3444444433 488999999998654322 11 11 134678999999977774
Q ss_pred cC----------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccC
Q 001258 971 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1113)
Q Consensus 971 ~d----------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~ 1040 (1113)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++..... ..+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 22 689999999998876665321 346899999999999988754 8999999988764211 111
Q ss_pred CCcccCccceEEEEeCCCCCEEEEE----eCCCcEEEEeccCCC
Q 001258 1041 AGVSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1041 ~gh~~~v~~i~~~~~p~d~~~l~s~----~~Dg~v~vW~~~~~~ 1080 (1113)
.... .+-.++++|.+++++++. ..+++|.+|+.. ++
T Consensus 264 -~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 264 -FRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp -CCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred -CCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1112 233588888777788887 678999999998 66
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=2.7e-12 Score=139.22 Aligned_cols=235 Identities=8% Similarity=-0.043 Sum_probs=162.2
Q ss_pred CCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258 817 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1113)
Q Consensus 817 ~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1113)
+.....+++|+|+|+ +++++. ++.|..|+..++ ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345578999999999 555665 799999999887 566666777899999999 888888777778999999988775
Q ss_pred eeeeccc----ccCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001258 895 KSKLKGH----SKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 953 (1113)
Q Consensus 895 ~~~l~~h----~~~V~~l~~s~d~~~L~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 953 (1113)
....... ...+.+++++|+|+++++.+. .+.|..++.. ++. .... ... .
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~-~~~---~ 172 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPI-RDR---V 172 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEE-CCC---S
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----EEee-cCC---C
Confidence 4333221 235678999999999987431 2334444443 221 1111 111 2
Q ss_pred CCceEEEccCCcEEEEE-cCCeEEEEeCC-ccce---eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258 954 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~~-~d~~v~v~d~~-~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
....++|+|||+.+++. .++.|.+|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+|+.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 45789999999998554 56899999986 5554 2333 2346677899999999876665 8899999987 77
Q ss_pred eeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1029 LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1029 ~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
.+..+. .+.. +. .++|...+++.|.+++.+ .+.-++..+.+
T Consensus 248 ~~~~~~-------~~~~-~~--~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 248 ELGRVL-------TPQT-TS--NLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EEEEEE-------CSSC-CC--EEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EEEEEE-------CCCC-ce--eEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 776665 3333 44 477753377888887765 34444554433
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=4.3e-11 Score=133.13 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=140.3
Q ss_pred ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
...++++|||++|+++. ++.|.++| .+++.+.. +... .++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999988875 36799999 99888777 5432 135566645567777888999999999 877663
Q ss_pred eec-----ccccC-eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCCceEEEccCCcE
Q 001258 897 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 897 ~l~-----~h~~~-V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~spdg~~ 966 (1113)
... ....+ .....+.+++..++..+.++.+.+.|+.+.............. ..........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11122 1234567776665555578889999987643211111111100 0000122345889999998
Q ss_pred EEEE-c----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258 967 FLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 967 l~~~-~----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
++++ . .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8874 2 24799999999999888864 33689999999999 777777 4899999999999999773
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=3.1e-11 Score=133.52 Aligned_cols=247 Identities=13% Similarity=0.071 Sum_probs=162.6
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
....+...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++|+|+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg 98 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDG 98 (333)
T ss_dssp EEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTS
T ss_pred EEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCC
Confidence 3344777889999999999 688888899999999988765431 22345689999999999
Q ss_pred CeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCcee
Q 001258 433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQ 502 (1113)
Q Consensus 433 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~ 502 (1113)
+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..||..+++..
T Consensus 99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 99 RLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp CEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred cEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEE
Confidence 988887766 68999999887643211 1113456799999999998 5555543 355666665555543
Q ss_pred eEeeccCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258 503 YIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1113)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 580 (1113)
.+..+...+..++|++ ++..+ ++.+.++.|.+||+.+. .....+.. .+.....+ ......+
T Consensus 176 -~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i 238 (333)
T 2dg1_A 176 -PIIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSC 238 (333)
T ss_dssp -EEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEE
T ss_pred -EeecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCce
Confidence 3333444577788654 45544 55566889999998642 22211100 00000000 0133446
Q ss_pred EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECCC
Q 001258 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDN 640 (1113)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg 640 (1113)
+++++++.+++...++.|.+||. +++.+..+.... +...+.+++|+||++.|++++.++
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 77777776777777899999998 566666665432 112578999999987777666553
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=6.2e-12 Score=134.36 Aligned_cols=239 Identities=10% Similarity=0.041 Sum_probs=165.2
Q ss_pred CccEEEEecCCCEEE-EEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 820 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999666 434 68999999866543322223335688999999 777666555 88999999876543222
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~ 976 (1113)
.......+.+++++++|+++++...++.|.+|+..+..... ..... ...+..++++++|+.+++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 22333678999999999988887788899999765432211 11111 1256889999999976665 568999
Q ss_pred EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeC
Q 001258 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p 1056 (1113)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... +. ..+... +..+++.|
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~~~~~--p~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FTGLNT--PLAVAVDS 243 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CCSCSC--EEEEEECT
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cCCCCC--ceeEEECC
Confidence 99988766544322 223678999999999777777778899999987654432 11 111122 33578888
Q ss_pred CCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1057 QEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1057 ~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+|+++++...++.|+++++...+
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCEEEEECCCCEEEEEcCCCcc
Confidence 67888999999999999988765
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.48 E-value=8.9e-13 Score=161.55 Aligned_cols=246 Identities=10% Similarity=-0.043 Sum_probs=159.5
Q ss_pred CCCCcEEEEEcCCCCeEEEEEec----CCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1113)
|...+.+++|||||++|+++.+. +.+|++||+.+|+.+ .. .+.+. ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 55578999999999975444433 458999999998754 10 01111 1267999999
Q ss_pred CCeEEEEeCCCe-------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC----cEEE
Q 001258 432 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV 493 (1113)
Q Consensus 432 g~~las~~~d~~-------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~----~i~i 493 (1113)
|+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||+. |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999987632 122233456678999999999995 44444444 6777
Q ss_pred EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe---cCCcEEEEEcCCCCC--eeeeeCC--CCceEEEEEccCCC
Q 001258 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGT 566 (1113)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~ 566 (1113)
||..++. ...+..+...+....+ + +|.+++... .++.|.+||+.+... ...+..+ ...+..++++
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 328 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---- 328 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----
Confidence 7765554 4555556655555554 2 345444443 257899999876542 1222222 2234444443
Q ss_pred eEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC----CCc
Q 001258 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNG 641 (1113)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~ 641 (1113)
++..+++...++..++|.+. +++....+..+. ...+..++++|+++.++.... .++
T Consensus 329 ------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 329 ------------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp ------------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred ------------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 23357778888888888654 455555554432 235778889999987774433 467
Q ss_pred EEEEEcCCCc
Q 001258 642 IKILATSDGI 651 (1113)
Q Consensus 642 i~iwd~~~~~ 651 (1113)
|++||+.++.
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999998873
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.48 E-value=2e-10 Score=124.57 Aligned_cols=239 Identities=10% Similarity=0.003 Sum_probs=162.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 457899999999998 46665557899999988 543221 1122346799999999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE-eeccCcCEEEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSV 515 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~ 515 (1113)
+...++.|..||.. ++ +... .+......+.++++.++|. ++++...++.|.+||. +++.... ...+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778889999986 33 2211 2223456799999999998 6777777889999998 6554332 23344567888
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeee-eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
++. ++|.+.++...++.|..||. ++..... .......+. .+++++++..+++...
T Consensus 147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~---------------------~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 147 TLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPV---------------------GITKGNDDALWFVEII 202 (299)
T ss_dssp EEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE---------------------EEEECTTSSEEEEETT
T ss_pred EEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce---------------------eEEECCCCCEEEEccC
Confidence 864 45567777767788999987 4332211 111122233 4455555555555556
Q ss_pred CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
++.|.+||. +++... +........+.+++++++|+++++...++.|..|+.
T Consensus 203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 789999999 666433 332323346789999999997777667788999987
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=6.6e-12 Score=134.14 Aligned_cols=239 Identities=8% Similarity=0.026 Sum_probs=160.0
Q ss_pred CcEEEEEcCCCCeEEE-EEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 360 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
...+++++++|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 566 54678999999976554321 112233467889999999976666
Q ss_pred eCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1113)
. ++.|.+||..+..... +. .....+.+++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987754321 22 2335789999999998 6777777889999986555433322223345667776
Q ss_pred eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1113)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1113)
. ++|.++++...++.|.+||................+. .+++++++..+++...++.
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~---------------------~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW---------------------GIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE---------------------EEEECTTCCEEEEETTTSC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce---------------------EEEECCCCCEEEEECCCCc
Confidence 5 4556777777788999999875432221111112333 4555555545666667889
Q ss_pred EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
|.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654432 221 22245789999999998888888999999987654
No 201
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.2e-08 Score=122.84 Aligned_cols=510 Identities=11% Similarity=0.061 Sum_probs=282.9
Q ss_pred CCcEEEEEcC--CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 359 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 359 ~~V~~~~~sp--dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
..|+++.... +|. |-.|+.++.|..||..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 4689998888 776 34455456688999877653221 0000 0001234688998888887665
Q ss_pred EEeCCCeEEEEEccCCceeeeeeee----ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec-----
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 507 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----- 507 (1113)
|..++-|..||..+++........ .-....|.++...++|. +.+ |..+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWI-GTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEE-EeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555545888998876532210000 00135699999988887 333 4444 688999777654332111
Q ss_pred --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
....|.++. .+.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+..+..+++
T Consensus 254 ~l~~~~i~~i~--~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIK--QLKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEE--ECTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEE--ECCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 235688776 34554 466666655678888765432211100 000000 00000 0111223444555555
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEc------cC-CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSID------AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
+. |-.|+.++-|..|+..++....... .. -....|.++...++|.+. +|+.++-|..|+..++ . ...+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-V-AIYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-E-EECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-e-EEEcc
Confidence 54 6667777888899887654332211 00 012357788888887755 4565566888876543 1 11100
Q ss_pred cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 738 (1113)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 738 (1113)
. .
T Consensus 400 ~--~---------------------------------------------------------------------------- 401 (781)
T 3v9f_A 400 E--N---------------------------------------------------------------------------- 401 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--C----------------------------------------------------------------------------
Confidence 0 0
Q ss_pred cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCC
Q 001258 739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818 (1113)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 818 (1113)
.......|.++...++|...+ ++.++-+..++... +........ ....
T Consensus 402 --------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 402 --------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL----------------------KKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred --------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence 000235678888888887444 55555566665432 211111000 0134
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~ 893 (1113)
..|.++...++|.+.+... +.|..||..+++........ ...|.++...+ +|++.+ |+.++-+..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 6788999888887665544 67999998876554332222 35688898887 676554 5554558888877655
Q ss_pred eeeeecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 894 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 894 ~~~~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
...-... ....|.++...++|.+.++.. +|.|..||..+++... .....+-. ...+.++...++|...+++
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---FQRKEGLP--NTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---ECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---ccccCCCC--CceEEEEEECCCCCEEEEc
Confidence 3322111 245789999999988776554 6754888887654321 11112211 1357888889999876665
Q ss_pred cCCeEEEEeCCccceeeccccCCC-CC--CeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258 971 HETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus 971 ~d~~v~v~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
.+.|..|+..+.+...--..++- .. ...++...++|++++ |+.+| +..++..
T Consensus 601 -~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 601 -NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD 655 (781)
T ss_dssp -SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred -CCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence 44577888876654322111111 11 235677788887655 55677 4455654
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.45 E-value=1.2e-11 Score=131.43 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=165.1
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC-cceEEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 451 (1113)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998754 22233 4688999999999999 34778999999 7
Q ss_pred Cceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEeec------cCcCEEEEeeeecCCc
Q 001258 452 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 523 (1113)
Q Consensus 452 ~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 523 (1113)
|+.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......++ +..+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 77666 34433 34788999999999 6777766 778888884 7888776652 112233333 45677
Q ss_pred eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1113)
Q Consensus 524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1113)
+++++...++.|.+||.+ ++.+..+.... ...++. ..++++.++++..++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~---------------------~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSA---------------------FLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEE---------------------ECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Ccccee---------------------EcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 77776665532 222333 3445556777777889999999
Q ss_pred CCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECC--------CcEEEEEcCCCccceeccc
Q 001258 604 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 604 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~ 658 (1113)
.+|+.+..+.... ....+..+...++|+++++.... +..+++.+....+.+-.+.
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9999998886331 12336678889999998887522 2335666633325544443
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=2.3e-11 Score=132.64 Aligned_cols=277 Identities=9% Similarity=0.055 Sum_probs=184.4
Q ss_pred EEeCCCceEEEeec-----CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 758 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 758 ~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
...|+++.+++... ++.+.+.|.. +++++.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC--cEEECCCCCE
Confidence 34678887777665 4677776654 34433322222 222 4999999998
Q ss_pred EEEEe-----------CCeEEEEECCCCceeeeecCCC-------CCeeEEEEecCCCcEEEEEec--CCcEEEEEcccc
Q 001258 833 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 892 (1113)
Q Consensus 833 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~ 892 (1113)
++++. ++.|.+||..+++.+.++.... .....++|+| ||++|.++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87764 4679999999999888774321 2466799999 8888887764 689999999999
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCC-ceEEE-ccCCcEEEE
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 969 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~-spdg~~l~~ 969 (1113)
+.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++..... ..... .....+ ....| .++|+++++
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 9988885321 1 233434456777888889888888876 3331111 01110 000122 22455 478988888
Q ss_pred EcCCeEEEEeCCccc--eeeccc--------cCCCCCCeeEEEECCCCCEEEEEeC----------CCcEEEEecCCCce
Q 001258 970 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1029 (1113)
Q Consensus 970 ~~d~~v~v~d~~~~~--~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~vwd~~~~~~ 1029 (1113)
+.++.+.+.|..+.. .+..+. .+-....+..++++++++.++.... .+.|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997654 333322 0001234456888999999888753 25799999999999
Q ss_pred eeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEE-eCCCcEEEEeccCCC
Q 001258 1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~-~~Dg~v~vW~~~~~~ 1080 (1113)
+.++.. + ..++ .+.+++ |++ +|+++ ..+++|.++|..+++
T Consensus 324 ~~~i~v------g--~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFEM------G--HEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEEE------E--EEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEC------C--CCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 988762 2 1233 488888 555 66554 558999999999988
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=5.1e-11 Score=132.58 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=143.7
Q ss_pred ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
...++++|||++++++. ++.|.++|+.+++.+.++.... +....|.+.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 45678999999988875 4789999999999888876422 1334453446667777888888888866655422
Q ss_pred ----ecccccCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEEccCCcE
Q 001258 898 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIH 966 (1113)
Q Consensus 898 ----l~~h~~~V-~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~spdg~~ 966 (1113)
+.....++ ..+.|++++..++..+..+.|.+.|+.............. .+..+ .....++++||+++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~r 332 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDR 332 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCE
Confidence 21111221 2356799998888888889999999866432111111110 00000 12345799999998
Q ss_pred EEEEc-----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258 967 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 967 l~~~~-----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+++.. .+.|.++|..+.+.+..+.. ......++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 87742 24799999999999998875 23689999999999 888888 5899999999999999886
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=3.8e-10 Score=125.48 Aligned_cols=268 Identities=11% Similarity=0.018 Sum_probs=167.0
Q ss_pred ceeEeccCCCCcEEEEEcCCCCeEEEEEe---------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC
Q 001258 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGT---------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420 (1113)
Q Consensus 350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 420 (1113)
++...+.-...- .++|||||+++.++.. .++.|.+||..+.+.+....+. . ..... +.
T Consensus 58 ~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~-----~-----~~~~~--~g 124 (373)
T 2mad_H 58 SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-----D-----APRFD--VG 124 (373)
T ss_pred eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC-----C-----ccccc--cC
Confidence 344455533334 9999999998555542 3678999999988776532110 0 00000 11
Q ss_pred cceEEEEEcCCCCeEEEEeC--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 421 VSVNRVIWSPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 421 ~~V~~l~~spdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
..-..++|||||++|+++.. ++.|.++| .+++.+... +. .. .++.+.|+++. .+++.+.|+.+.+||. +
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~---~~~~~~~~~~~-~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SP---TCYHIHPGAPS-TFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CC---ceEEEEeCCCc-eEEEEcCCCCEEEEEC-C
Confidence 23458999999999999874 57899999 998765420 21 11 13566677765 5677778999999999 8
Q ss_pred CceeeEee-----ccCcCE-EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEEe
Q 001258 499 GAKQYIFE-----GHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQ 570 (1113)
Q Consensus 499 ~~~~~~~~-----~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~ 570 (1113)
++.+.... ....++ ....+.... +.+++. +..+.+.+.|+....... .+...........|.|.+
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g----- 268 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG----- 268 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecC-CEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCc-----
Confidence 87763322 111121 112222322 233333 367889999987543221 111111111122333333
Q ss_pred ccccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEE-C
Q 001258 571 GFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST-N 638 (1113)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~ 638 (1113)
...+.++|+++.+++... .+.|.++|..+++.+..+.... ...+++|+|||+ +++++. .
T Consensus 269 ------~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 269 ------WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred ------eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEcCC
Confidence 233567777777777543 3689999999999999886543 368999999999 777776 5
Q ss_pred CCcEEEEEcCCCccceec
Q 001258 639 DNGIKILATSDGIRLLRT 656 (1113)
Q Consensus 639 dg~i~iwd~~~~~~~~~~ 656 (1113)
++.|.++|..++ +.+..
T Consensus 340 ~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 340 TEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred CCeEEEEECCCC-CEEee
Confidence 899999999988 44443
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=2.2e-11 Score=150.26 Aligned_cols=245 Identities=9% Similarity=-0.016 Sum_probs=153.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
|...+..++|||||++|+++.+.+| +|++||+.+|+.+.. . .+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence 3346889999999997544444334 599999999987542 0 01112357899999
Q ss_pred CeEEEEeCCCe--------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecC-----CCcEE
Q 001258 433 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIK 492 (1113)
Q Consensus 433 ~~las~~~d~~--------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~ 492 (1113)
+.|+.++.++. |.+|++.++... ..+.....|...+..+.|||||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998876654 889999877532 111122234446899999999995 444443 34899
Q ss_pred EEeCCCC--ceeeEeeccCcCEEEEeeeecCCceEEEEEec----CCcEEEEEcCCCC-Ceee-eeCCCCceEEEEEccC
Q 001258 493 VWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVD-YEAPGRWCTTMAYSAD 564 (1113)
Q Consensus 493 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~-~~~~~~~v~~~~~s~~ 564 (1113)
+||+.++ ++...+..+...+.... .+ +|..|+..+. ++.|.+||+.+.. .... +..+...+..++++
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-- 372 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFV-DG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-- 372 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEE-EE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--
T ss_pred EEECCCCCCcccEEecCCCCceEEEE-ec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--
Confidence 9999887 42556665655555443 23 4456666654 3459999987642 2222 22222223333332
Q ss_pred CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEE----CC
Q 001258 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----ND 639 (1113)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d 639 (1113)
++..+++...++..++|.+. +++....+..+. ...+..++++|+++.++... ..
T Consensus 373 --------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 373 --------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp --------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred --------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 22356777788887777554 455666665432 23577889999987665332 24
Q ss_pred CcEEEEEcCCC
Q 001258 640 NGIKILATSDG 650 (1113)
Q Consensus 640 g~i~iwd~~~~ 650 (1113)
++|++||+.++
T Consensus 432 ~~i~~~d~~tg 442 (741)
T 1yr2_A 432 ATVLALDPATA 442 (741)
T ss_dssp EEEEEEETTTT
T ss_pred CEEEEEECCCC
Confidence 68999999877
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=2.8e-09 Score=115.55 Aligned_cols=278 Identities=9% Similarity=0.050 Sum_probs=185.8
Q ss_pred ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
....+.+++++++|+.+++...++.|.+|+.. ... ....... ....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~----------------------~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI----------------------KEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE----------------------EEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce----------------------EEEECCC--CCCcceeEEECCC
Confidence 34578899999999977776677888888654 111 1110111 3356889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceee-eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee-eecccccCeE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 906 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 906 (1113)
|++.++.. ++.|..||.. ++... ........+..+++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99777766 6889999987 55432 2232346689999998 78888777668899999987 55442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~ 985 (1113)
++++.++++++++...++.|..|+. +++... .... .. ...+..++++++|..+++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777777788999998 433221 1111 11 1256889999999877775 4568999998 5554
Q ss_pred eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
..... ..+...+.+++++++|++.++...++.|..|+. +++.. .+. .+ .....+.. ++..+ +|++.++.
T Consensus 221 ~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-~~~~~~~~--i~~~~-~g~l~v~~ 289 (300)
T 2qc5_A 221 SEYDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-TENAEPHG--ITFGK-DGSVWFAL 289 (300)
T ss_dssp EEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-STTCCCCC--EEECT-TSCEEEEC
T ss_pred EEEEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-ccCCccce--eEeCC-CCCEEEEc
Confidence 33222 234567899999999997776666789999998 45443 222 11 12233443 66667 67766655
Q ss_pred eCCCcEEEEecc
Q 001258 1066 LSDGGVHVFEPL 1077 (1113)
Q Consensus 1066 ~~Dg~v~vW~~~ 1077 (1113)
. . .|..+++.
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 4 4 67777653
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=3.9e-10 Score=123.35 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=160.0
Q ss_pred CCccEEEEecCCCEEEE-------E-eCCeEEEEECCCCceeeeec----CCCCCeeEEEEecCC-CcEEEEEecCCcEE
Q 001258 819 EAVPCFALSKNDSYVMS-------A-SGGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQD-NNIIAIGMDDSSIQ 885 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~-------~-sdg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d-~~~la~g~~dg~v~ 885 (1113)
....+++|+++|+++++ + .++.|.+||..+++...... ++...+..+++++ + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 45678999999988877 3 37899999988776543222 2445689999999 6 76555443 45799
Q ss_pred EEEcccceeeee-ecc----cccCeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCccccccccccC
Q 001258 886 IYNVRVDEVKSK-LKG----HSKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDGWEKQKNRFLQIP 945 (1113)
Q Consensus 886 iwd~~~~~~~~~-l~~----h~~~V~~l~~s~d~~~L~s~s~D---------------~~v~iwd~~~~~~~~~~~~~~~ 945 (1113)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..|+.+ ++... .....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~--~~~~~ 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ--VDTAF 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE--EEEEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE--eccCC
Confidence 99988 665433 221 22458899999999988887665 456666654 32211 11100
Q ss_pred CCCCCCCCCCceEEEc----cCCcEEEEE--cCCeEEEEeCC-ccce-----eeccccCCCC-CCeeEEEECCCCCEEEE
Q 001258 946 TGRTPTAQSDTRVQFH----QDQIHFLVV--HETQLAIFETT-KLEC-----VKQWVPRESS-APITHATFSCDSQLVYA 1012 (1113)
Q Consensus 946 ~~~~~~~~~i~~~~~s----pdg~~l~~~--~d~~v~v~d~~-~~~~-----~~~~~~~~h~-~~v~~l~~s~dg~~l~s 1012 (1113)
.....++++ |+|+.++++ .++.|.+|+.. +++. ...+ ..+. ..+..++++++|.++++
T Consensus 172 -------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 172 -------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp -------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCCEEEE
T ss_pred -------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCCEEEE
Confidence 134688999 999776653 56899999976 3432 2222 1333 56889999999998888
Q ss_pred EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEeCCCcEEEEeccC
Q 001258 1013 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1013 ~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~~Dg~v~vW~~~~ 1078 (1113)
...++.|.+||..+++....+. .+...+. .++|+| +++ ++++...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~~--~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIR-------CPFEKPS--NLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEE-------CSSSCEE--EEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEEEe-------CCCCCce--eEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 8788999999998777665554 2223333 577777 677 455555678999999875
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=3.7e-09 Score=114.59 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=160.0
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
....+.++++.++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456889999999998 56666678999999987 543321 1122345789999999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-EeeccCcCEEEE
Q 001258 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 515 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 515 (1113)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778889999988 54321 12333446799999999998 67777768899999977 65442 223344567778
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1113)
++. +++.+.++...++.|..||. ++.. ..+. .....+. .++++++++.+++..
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~---------------------~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAAPV---------------------GITSGNDGALWFVEI 206 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEE---------------------EEEECTTSSEEEEET
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCCcc---------------------eEEECCCCCEEEEcc
Confidence 754 45566666666788999987 3222 2221 1122233 445555554555555
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
..+.|.+|+. +++.... ........+.++++.++|+++++...++.|..|+.
T Consensus 207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 6678999998 5554432 22222345788999999997777666788988886
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=4.2e-10 Score=123.10 Aligned_cols=256 Identities=13% Similarity=0.097 Sum_probs=159.8
Q ss_pred cCCCCcEEEEEcCCCCeEEEE-------EecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258 356 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1113)
Q Consensus 356 ~h~~~V~~~~~spdg~~ll~~-------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1113)
..-....+++|+++|+ ++++ ++.++.|.+||..+++..... . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--------------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K--------------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C--------------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e--------------cccCCCCCCCceEEE
Confidence 3455678999999998 5666 567899999998887653210 0 001234457999999
Q ss_pred cCC-CCeEEEEeCCCeEEEEEccCCceeee-eeeee-cccCCeeEEEEcCCCCeeEEEEecCC---------------Cc
Q 001258 429 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEID-AHVGGVNDIAFSHPNKQLCVITCGDD---------------KT 490 (1113)
Q Consensus 429 spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d---------------~~ 490 (1113)
+++ |+++++.. .+.|.+||.. ++.... ..... .+...+.+++++++|+ ++++...+ +.
T Consensus 79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 76555554 4469999988 654321 10001 1224589999999998 55665544 56
Q ss_pred EEEEeCCCCceeeEeeccCcCEEEEeee--ecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258 491 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1113)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 567 (1113)
|..||.. ++... +..+......++++ .++++..+ ++...++.|.+||+......... ..+.-.+.
T Consensus 155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~--- 222 (314)
T 1pjx_A 155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPG--- 222 (314)
T ss_dssp EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCC---
T ss_pred EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCC---
Confidence 7777765 55433 33344456777765 11455555 44456889999997621111000 00000000
Q ss_pred EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEE
Q 001258 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA 646 (1113)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd 646 (1113)
+.......++++++++.+++...++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+
T Consensus 223 ----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 223 ----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 000123446666777667777778999999998787777665442 457899999999955544 4567899998
Q ss_pred cCC
Q 001258 647 TSD 649 (1113)
Q Consensus 647 ~~~ 649 (1113)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.32 E-value=9.1e-11 Score=144.74 Aligned_cols=281 Identities=11% Similarity=0.056 Sum_probs=170.6
Q ss_pred CCCcceeeccCCC---ceeeEeccCCC-CCCcceec-cc--CcccccCceEEEEEeCCCceEEEeecC-----CeEEEEE
Q 001258 712 ADVKPRITEESND---KSKVWKLTELS-EPNQCRSL-RL--PENLRATKISRLIFTNSGNAILALASN-----AIHLLWK 779 (1113)
Q Consensus 712 ~~~~~l~~~~~d~---~i~iw~~~~~~-~~~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vw~ 779 (1113)
+++..++....++ ...+|...... .......+ .. ...++...+..++|||||+.|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 6677766554443 35667665320 00111111 11 011233468899999999998877654 3577776
Q ss_pred ccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CC--------------eEEEE
Q 001258 780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISLF 844 (1113)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--------------~i~vw 844 (1113)
+. +|..+.... +...+..++|+|| +.|+.++ ++ .|++|
T Consensus 196 l~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 196 VA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp TT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred CC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence 65 333322111 1112357899999 9888876 43 38999
Q ss_pred ECCCCce--eeeec--CCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc--eeeeeecccccCeEEEEEcCC
Q 001258 845 NMMTFKT--MATFM--PPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHA 913 (1113)
Q Consensus 845 d~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d 913 (1113)
++.++.. ...+. .+...+..+.||| ||++|+..+.++ .|++||+.++ +....+..+...+.... +|+
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d 326 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV 326 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc
Confidence 9977652 22333 2333588999999 898888877554 8999999876 32556666666666554 489
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC-ccceee
Q 001258 914 LNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVK 987 (1113)
Q Consensus 914 ~~~L~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~-~~~~~~ 987 (1113)
|+.|+..+.+ +.|.+||+.++. .. .......+. ..+..+.++ ++..+++ ..++..+||.+. +++...
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 9988887764 449999988742 11 111122221 234566666 4444455 477776666443 355555
Q ss_pred ccccCCCCCCeeEEEECCCCCEEEEEe----CCCcEEEEecCCCce
Q 001258 988 QWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1029 (1113)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~vwd~~~~~~ 1029 (1113)
.+.. .+...+..+.++||++.|+... ..++|++||+.+++.
T Consensus 400 ~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4442 2356789999999998666332 347899999998874
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.27 E-value=8.7e-10 Score=122.71 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=166.5
Q ss_pred CCCCeEEEEEecC----CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe----
Q 001258 368 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1113)
Q Consensus 368 pdg~~ll~~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1113)
|++++++++...+ +.|.+.|..+++.+.+.. .+. .+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG~-~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GGF-LP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECS-SC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CCC-CC--ceEECCCCCEEEEEecccc
Confidence 5677666665544 799999999999886522 122 24 799999999998876
Q ss_pred ------CCCeEEEEEccCCceeeeeeeee--c---ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCceeeEee
Q 001258 440 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE 506 (1113)
Q Consensus 440 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~ 506 (1113)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .+++|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999998766432 21 0 1234568999999995 44443 36899999999999988876
Q ss_pred ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee----eeCCCCc-eEEEEEccCCCeEEecc---------
Q 001258 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRW-CTTMAYSADGTRTYQGF--------- 572 (1113)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~~~~~~--------- 572 (1113)
--.. ....+... ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+.+++..++...
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 3221 11223222 3555666777777777743332211 1111111 01122333333211100
Q ss_pred ------------------------ccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCCC
Q 001258 573 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL 618 (1113)
Q Consensus 573 ------------------------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1113)
.......++++++++++++... ++.|.++|..+++.+..+....
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 0011122688899888777642 3579999999999999886543
Q ss_pred CCcCeEEECCCCC-EEEEEE-CCCcEEEEEcCCCccceecc
Q 001258 619 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF 657 (1113)
Q Consensus 619 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 657 (1113)
....+.|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 368999999999 888887 5899999999998 455443
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=2.1e-09 Score=121.32 Aligned_cols=256 Identities=11% Similarity=0.035 Sum_probs=164.2
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
...+.|+|+++|+ |+++...++.|++||..+++.... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4689999999998 688877789999999988765431 111 12233 9999999999988
Q ss_pred eCCC--eEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE----eeccCcC
Q 001258 439 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 511 (1113)
Q Consensus 439 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~h~~~ 511 (1113)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 799999887654332212222 5567899999996553 33466688999999887764322 2222222
Q ss_pred E--EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 512 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 512 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
- ..++|++. ++.++++...++.|+.|+.... ...+...... .. ..+| ......-.....++++++++.+
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27787653 3467777777889999987642 2222211100 00 0000 0000001234567788888877
Q ss_pred EEEe-cCCcEEEEECCCCceEEEEccCC------------CCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258 590 LAAG-DDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1113)
Q Consensus 590 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 647 (1113)
++-. .++.|+.|++.++.......... .......+++++++.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 78999999987776443332100 1234678999999888888888888887764
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.1e-09 Score=118.86 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=154.8
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
.+..+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence 444466677899999999988899888999999998 444221 22345578999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEE----ecC-------------CCcEEEE
Q 001258 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 494 (1113)
Q Consensus 433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s----~s~-------------d~~i~iw 494 (1113)
+++++...++.|.+|+.. ++.........+. ...++++++.++|+ +.++ |.. .+.|..|
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 977766666889999986 5422211111111 23578899999998 5665 332 2567888
Q ss_pred eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE
Q 001258 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
|..+++..... .......++|++ ++..|+.+... +.|.+|++.... .... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87677654433 445567788754 55666666554 689999887533 1100 00
Q ss_pred EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 643 (1113)
+..........++++++|+ |.++..+ .|.+|+. +++.+..+.... .+.+++|+++++.|.+++.++..+
T Consensus 233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 0000011223356667776 4444444 5999998 577777776543 378999999999888888764333
No 215
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.25 E-value=1.8e-05 Score=93.75 Aligned_cols=525 Identities=11% Similarity=0.039 Sum_probs=276.6
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE-eCCCeEEEEEccC
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG 451 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~ 451 (1113)
||++ ..+.|+.-++.+.+.... +....-..+..|+|++++..|..+ ..++.|..+++..
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4443 467888888876543221 111123468899999976666554 4578899999876
Q ss_pred CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEE-e
Q 001258 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-A 530 (1113)
Q Consensus 452 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~ 530 (1113)
..... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.+. +|.+.++- +
T Consensus 69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g 143 (628)
T 4a0p_A 69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG 143 (628)
T ss_dssp CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence 54222 12222345778999887775 4556666788999997644332222233455678887653 33444443 2
Q ss_pred cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceE
Q 001258 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLL 609 (1113)
Q Consensus 531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 609 (1113)
..+.|...+++........ ........+++.+ ++..|+.+ ...+.|..+|++....
T Consensus 144 ~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~---------------------~~~~LY~aD~~~~~I~~~d~dG~~~- 200 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLV-PNVGRANGLTIDY---------------------AKRRLYWTDLDTNLIESSNMLGLNR- 200 (628)
T ss_dssp SSCEEEEEETTSCSCEEEE-CSCSSEEEEEEET---------------------TTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCCEEEEEeCCCCceEEEE-CCCCCcceEEEcc---------------------ccCEEEEEECCCCEEEEEcCCCCce-
Confidence 2456666666543322221 2223344444444 43345554 3567888888865443
Q ss_pred EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccc
Q 001258 610 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 689 (1113)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1113)
..+... ......+++.. +.+.++-...+.|...|..++.. ...+.......
T Consensus 201 ~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p------------------------- 251 (628)
T 4a0p_A 201 EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYV------------------------- 251 (628)
T ss_dssp EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSC-------------------------
T ss_pred EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCc-------------------------
Confidence 233221 22345677764 44444544577888888776632 22221110000
Q ss_pred ccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEe-CCCceEEE
Q 001258 690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILA 768 (1113)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~ 768 (1113)
..|.++.-........|.. .......+++. |.+. ..+
T Consensus 252 ----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~~C 289 (628)
T 4a0p_A 252 ----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-FVC 289 (628)
T ss_dssp ----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-EEE
T ss_pred ----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-eeE
Confidence 0111111110000001100 00011112221 2122 122
Q ss_pred eecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCC
Q 001258 769 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT 848 (1113)
Q Consensus 769 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~ 848 (1113)
.+..|... .....+|.. ...+|+.+....|+-..+..
T Consensus 290 ~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~ 326 (628)
T 4a0p_A 290 GCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVIDE 326 (628)
T ss_dssp ECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCCT
T ss_pred EcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEeccc
Confidence 22222110 111223322 34577777777787777654
Q ss_pred Ccee-eeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc------cccCeEEEEEcCCCCEE-EE
Q 001258 849 FKTM-ATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-VS 919 (1113)
Q Consensus 849 ~~~~-~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~L-~s 919 (1113)
.... ..+. .....+..++|.+.++.++.+=...+.|+.++.........+.. ....+.+|++...++.| ++
T Consensus 327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence 3211 1222 12345889999985555555444567888888764332223322 23468899999876655 45
Q ss_pred EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-CCcEEEE-EcCC--eEEEEeCCccceeeccccCCCC
Q 001258 920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRESS 995 (1113)
Q Consensus 920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~-~~d~--~v~v~d~~~~~~~~~~~~~~h~ 995 (1113)
-+..+.|.+.+++.... . .... ... .....+++.| .|.++.+ .... .|...+++.... ..+.. ..-
T Consensus 407 d~~~~~I~v~~~~G~~~-~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l 476 (628)
T 4a0p_A 407 CEATNVINVTRLDGRSV-G-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGL 476 (628)
T ss_dssp ETTTTEEEEEETTSCEE-E-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSC
T ss_pred cCCCCEEEEEECCCCeE-E-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccC
Confidence 56678899999875321 1 1111 111 2468999999 5555555 2333 677777754332 22221 124
Q ss_pred CCeeEEEECCCCCEEEEEeC-CCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258 996 APITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
.....|++++++..|+.+.. .+.|...+++... ...+.. +.-.. +..++.. ++.++.+-...+.|...
T Consensus 477 ~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~~~~~--P~glav~--~~~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 477 SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED------SNILQ--PVGLTVF--ENWLYWIDKQQQMIEKI 545 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC------SSCSC--EEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc------CCCCC--cEEEEEE--CCEEEEEECCCCeEEEE
Confidence 46789999998877776654 5789999986543 333320 11122 3335544 34555665566788888
Q ss_pred eccCCC
Q 001258 1075 EPLESE 1080 (1113)
Q Consensus 1075 ~~~~~~ 1080 (1113)
+..+|+
T Consensus 546 ~k~~G~ 551 (628)
T 4a0p_A 546 DMTGRE 551 (628)
T ss_dssp ETTSSS
T ss_pred ECcCCC
Confidence 888777
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.8e-09 Score=121.83 Aligned_cols=249 Identities=9% Similarity=-0.006 Sum_probs=161.3
Q ss_pred CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccceee
Q 001258 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1113)
..+..++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3578899999999666665 68999999988776555443 22334 99999 788888887766 7999988765543
Q ss_pred eee----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCc-eEEEccCCcEEE-E
Q 001258 896 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQDQIHFL-V 969 (1113)
Q Consensus 896 ~~l----~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~spdg~~l~-~ 969 (1113)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|+ +
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 225567889999995555555777889999999875421110000 111111 1113 899999644444 4
Q ss_pred -EcCCeEEEEeCCccceeeccccCC-------------CCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecC
Q 001258 970 -VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 970 -~~d~~v~v~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
..++.|+.|+.... +..+.... .-.....++++++|+++++-. .++.|+.|++.++.......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35678999987643 22221100 023578999999999777777 78999999988887543322
Q ss_pred CCcc--cCCCc---ccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258 1035 PSAY--LPAGV---SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus 1035 ~~~~--~~~gh---~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
.... ...|. ..--.|-.+++.| +|+++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 1000 00010 0012355688888 5788888888888888775
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=2.9e-09 Score=115.11 Aligned_cols=234 Identities=11% Similarity=0.073 Sum_probs=150.5
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
.-..+..|+|++..|+++...++.|..||..+++.... .+...+.+++++++|+++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVATI 71 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEEE
Confidence 34568999998777888888899999999988764221 123579999999999965553
Q ss_pred eCCCeEEEEEccCCceeeeeeeeec--ccCCeeEEEEcCCCCeeEEEEe-cC--------CCcEEEEeCCCCceeeEeec
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~-s~--------d~~i~iwd~~~~~~~~~~~~ 507 (1113)
++.|.+||..+++.. .+..... ....+++++++|+|+ ++++. +. .....||.+.....+..+..
T Consensus 72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 567999999887643 2212111 123588999999998 44443 22 13345555543222333333
Q ss_pred cCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcC--CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258 508 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1113)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 584 (1113)
+....+.++|++ +++.+ ++.+.++.|..|++. ++. .... .+.... .........+++++
T Consensus 147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~--------~~~~~~-------~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNR--------RSVYKL-------EKEEQIPDGMCIDA 208 (297)
T ss_dssp EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCC-EEEE--------EEEEEC-------CGGGCEEEEEEEBT
T ss_pred ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCc-ccCc--------EEEEEC-------CCCCCCCCeeEECC
Confidence 445567888765 44544 566678899999874 222 1100 000000 00012334566677
Q ss_pred CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEEC
Q 001258 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 638 (1113)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 638 (1113)
+|+..++....+.|.+||..+++.+..+..+. ..+++++|. |+++.|++++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 77667777778889999999899988887653 368899998 88887776654
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=4.4e-10 Score=123.15 Aligned_cols=197 Identities=9% Similarity=-0.012 Sum_probs=129.8
Q ss_pred ccEEEEecCCCEEEEEe---CCeEEE--EECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----
Q 001258 821 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---- 891 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---- 891 (1113)
...++++|||++++++. ++.+.+ +|+.+ +..+.... . ..+.|++.+.+++.+.||.+.+.|+.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 45688999999888875 356888 88877 34443211 1 223453455666777899998899887
Q ss_pred -ceeeee----ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEE
Q 001258 892 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQF 960 (1113)
Q Consensus 892 -~~~~~~----l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~ 960 (1113)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+ .....+++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~ 271 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAK 271 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEE
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEE
Confidence 544321 11122333 3 566676666666 8999999875321111111110 00000 12234789
Q ss_pred ccCCcEEEEE-c-C--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEEe-CCCcEEEEecCCCc
Q 001258 961 HQDQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLK 1028 (1113)
Q Consensus 961 spdg~~l~~~-~-d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~-~Dg~v~vwd~~~~~ 1028 (1113)
+||+++++++ . . +.+.++|+.+++.+..+..+ .....++|+|||++ +++.. .++.|.|+|+.+++
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 9999988874 3 2 36779999999999988753 36899999999985 45555 48999999999999
Q ss_pred eeeecC
Q 001258 1029 LRCRIN 1034 (1113)
Q Consensus 1029 ~~~~~~ 1034 (1113)
.+.++.
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 998886
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=2.2e-10 Score=125.59 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=135.1
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCCCc-----------eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw 887 (1113)
..+..+++++...++++|+...+.+|+++... ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976433 11222 2455 999999 56788888 88999999
Q ss_pred EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l 967 (1113)
|+.+.........|...+.++.+.+.. +++++.||.|.+||+..+.... .. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eE
Confidence 998866556677788889988887553 8889999999999999755321 11 368999999999 44
Q ss_pred EEEcCCeEEEEeCCccce--eecccc----C---CCCCCeeEEEECCCCCEEEEE
Q 001258 968 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus 968 ~~~~d~~v~v~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
+...|+.+++|+..++++ ...+.. . +|...|.+++|.+++.++++=
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 446999999999887775 444411 1 468899999999999998863
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=2.6e-10 Score=125.01 Aligned_cols=177 Identities=11% Similarity=0.039 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCce--------eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i 493 (1113)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |++|+| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 66699875431 1111 1224666 999999 888 67777 8899999
Q ss_pred EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1113)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 573 (1113)
||+.+.........|...+.++.+.+ . .+++++.||.|.+||+.+..... ...
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~------------------- 163 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQ------------------- 163 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEE-------------------
T ss_pred EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccC-------------------
Confidence 99998776667777888888876543 2 28888999999999998654321 112
Q ss_pred cCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--EEEEcc----C---CCCCCcCeEEECCCCCEEEEEE
Q 001258 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST 637 (1113)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~~~~~l~~~~ 637 (1113)
.+.+++|+|+| ++.|..||.+++|+...++. ...+.. + .+...|.++.|.+++.++++-.
T Consensus 164 --~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 164 --NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp --SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred --CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 34455566665 67789999999999887775 555621 1 2345799999999998888643
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.20 E-value=4e-09 Score=113.96 Aligned_cols=225 Identities=9% Similarity=0.050 Sum_probs=148.7
Q ss_pred CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
.-..+..|++++..|+... ++.|..||..+++. ..+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3456889999766666554 68999999987665 3333 346789999999 7875554 4 5689999998876533
Q ss_pred eecc----cccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 897 KLKG----HSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~L~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
.... ....++.++++|+|+++++...+ ..-.+|.++....... ..... .....++|+||
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~-------~~pngi~~spd 159 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQV-------DISNGLDWSLD 159 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEE-------SBEEEEEECTT
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeecc-------ccccceEEcCC
Confidence 2221 23458899999999987765332 3345666554221111 11100 13468999999
Q ss_pred CcEEEEE--cCCeEEEEeC--Ccccee--eccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCC
Q 001258 964 QIHFLVV--HETQLAIFET--TKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1113)
Q Consensus 964 g~~l~~~--~d~~v~v~d~--~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~ 1036 (1113)
++.|+++ .++.|.+|++ .++... +.+. ...+...+..++++++|.+.++...++.|.+||.++++.+..+.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-- 237 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-- 237 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence 9987664 5688999987 455432 1111 11224567899999999888887778899999999999888776
Q ss_pred cccCCCcccCccceEEEEe-CCCCCEEEEEe
Q 001258 1037 AYLPAGVSSNVHPLVIAAH-PQEPNEFALGL 1066 (1113)
Q Consensus 1037 ~~~~~gh~~~v~~i~~~~~-p~d~~~l~s~~ 1066 (1113)
.+...++ +++|. | |++.|..++
T Consensus 238 -----~p~~~~t--~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 238 -----LPVDKTT--SCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp -----CSSSBEE--EEEEESG-GGCEEEEEE
T ss_pred -----CCCCCce--EEEEeCC-CCCEEEEEc
Confidence 2223344 58888 5 556554443
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=4.2e-10 Score=124.48 Aligned_cols=273 Identities=8% Similarity=-0.016 Sum_probs=172.6
Q ss_pred CceEEEEEeCCCceEEEeec--CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 752 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 752 ~~i~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
.....++++++|+.+++... ++.++||.+.. +..... .-|. .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~---p~~~----------~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPF---PPQS----------GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEES---CCCC----------SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecC---CCcc----------cCcccceeEeeEEEEcCC
Confidence 46789999999998777532 34356666541 111100 0000 001125567899999999
Q ss_pred CCEEEEEe------CCeEEEEECCCCceeeeecCC------CCCeeEEEEecCCCcEEEEEe---cCCcEEEEEccccee
Q 001258 830 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 894 (1113)
Q Consensus 830 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~---~dg~v~iwd~~~~~~ 894 (1113)
++++++-. ++.|.+||+.+++.+..+... ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999988876665432 235689999984455556555 678999999998887
Q ss_pred eeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC
Q 001258 895 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 972 (1113)
Q Consensus 895 ~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d 972 (1113)
...+.+|..... ...+..+|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1345567877878888888766642 23679999999988875 33
Q ss_pred C-eEEEEeCCc---c-----ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258 973 T-QLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus 973 ~-~v~v~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
+ .+..++... + +....+...++......++++++|.++++...++.|.+||..+++...... .
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~- 287 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------D- 287 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------C-
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------C-
Confidence 3 455554321 1 111111111223456789999999999998889999999986666432221 1
Q ss_pred ccCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258 1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus 1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
.....+-.+++.+ +++++++.+..+.+.+|
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 1122344588887 67887777655544333
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=1.7e-09 Score=132.04 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=154.6
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecC----CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
|...+..++|||||++++.+.+.. .+|++||+.+|+.+.. . +. ......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence 455788999999999755544333 4799999999986542 0 11 0113568999 99
Q ss_pred CeEEEEeCCC-------------eEEEEEccCCcee-eeeeeeec-ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEe
Q 001258 433 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWD 495 (1113)
Q Consensus 433 ~~las~~~d~-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd 495 (1113)
+.|+.++.+. .|++|++.++..- ..+..... |...+..+.|+|||+.+++.+.. .+..|++||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999988774 3999999876531 12222333 55568899999999963333222 235899999
Q ss_pred CCCCc-eeeEeeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEE
Q 001258 496 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTY 569 (1113)
Q Consensus 496 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~ 569 (1113)
+.++. ....+..+....... +++.. +.+++....+ +.|..||+.+... ...+..+...+. .
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~--------- 332 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T--------- 332 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E---------
T ss_pred CCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E---------
Confidence 98764 456666666665554 33333 3455555443 5788898887543 122333322222 3
Q ss_pred eccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC----CcE
Q 001258 570 QGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NGI 642 (1113)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i 642 (1113)
|++++++|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..++....+ +.+
T Consensus 333 ------------~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 333 ------------VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp ------------EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred ------------EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 4444445665554 43 6889998744 445554332 2345667778888777666544 789
Q ss_pred EEEEcCCC
Q 001258 643 KILATSDG 650 (1113)
Q Consensus 643 ~iwd~~~~ 650 (1113)
..||+.++
T Consensus 399 ~~~d~~~g 406 (693)
T 3iuj_A 399 YRFEPKSG 406 (693)
T ss_dssp EEECTTTC
T ss_pred EEEECCCC
Confidence 99998776
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.4e-09 Score=120.39 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=149.5
Q ss_pred CCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
..+..++++|+|+ ++++.. .++.+.||.+.+++.. .|.-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6889999999998 577653 2343667766555432 121111 01235667899999999998777
Q ss_pred EEeC-----CCeEEEEEccCCceeeeeeeee----cccCCeeEEEEcCCCCeeEEEEec---CCCcEEEEeCCCCceeeE
Q 001258 437 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 504 (1113)
Q Consensus 437 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~ 504 (1113)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999998755422 221 22345789999987654 455555 678999999998887776
Q ss_pred eeccCcCEE-EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc-----------
Q 001258 505 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF----------- 572 (1113)
Q Consensus 505 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~----------- 572 (1113)
+.+|..... ...+. .+|..+.+.+.+|.++.|.. .+..++++|+|+.++...
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 655421100 01111 12233333344444433311 123344444443222110
Q ss_pred ---------------------ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258 573 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1113)
Q Consensus 573 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 631 (1113)
.......++++++|+.+++...++.|.+||..+++........ ......+++|.++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence 0012334778888888888888999999998566644333221 233567899999988
Q ss_pred EEEEEECCCc
Q 001258 632 LLAVSTNDNG 641 (1113)
Q Consensus 632 ~l~~~~~dg~ 641 (1113)
++++....+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777665433
No 225
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.17 E-value=1.8e-05 Score=93.60 Aligned_cols=502 Identities=10% Similarity=0.049 Sum_probs=255.2
Q ss_pred CcceEEEEEcCCCCeEEEEe-CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258 420 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~ 498 (1113)
-.....|+|++.+..|..+. ..+.|..+++.+...... .+..-......+++.+.+.. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 34678999999777766654 467898999876532111 23333357889999997765 556666788999999764
Q ss_pred CceeeEee-ccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258 499 GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1113)
Q Consensus 499 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 576 (1113)
.. ...+. ..-.....+++.+.. |.++++-- ..+.|...+++.................+++.
T Consensus 116 ~~-~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald-------------- 179 (619)
T 3s94_A 116 SL-RKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD-------------- 179 (619)
T ss_dssp CS-CEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE--------------
T ss_pred CC-EEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE--------------
Confidence 43 33332 333445566765432 34444432 23455555554322222222222334444444
Q ss_pred eeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258 577 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 577 i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
+++..|+.+ ...+.|...|++........... ......+++..+ .+.++-...+.|...|..++.. ..
T Consensus 180 -------~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~ 248 (619)
T 3s94_A 180 -------YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LR 248 (619)
T ss_dssp -------TTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CE
T ss_pred -------ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cE
Confidence 443344444 35677888888654333222211 223457888765 4444545667888888877733 22
Q ss_pred ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1113)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1113)
.+..... .+. .|.++......
T Consensus 249 ~i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp 269 (619)
T 3s94_A 249 EIHSDIF-------------SPM----------------------------------------------DIHAFSQQRQP 269 (619)
T ss_dssp ECCSCCC-------------CCS----------------------------------------------EEEECCGGGSC
T ss_pred EEecCCC-------------CCc----------------------------------------------EEEEEccccCC
Confidence 2211100 000 11111100000
Q ss_pred -CCCcceecccCcccccCceEEEEE-eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258 736 -EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1113)
Q Consensus 736 -~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 813 (1113)
....+.. .......+++ +|.....-+.+.+|. .+.
T Consensus 270 ~~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~--------------------------------~l~---- 306 (619)
T 3s94_A 270 NATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGV--------------------------------KLL---- 306 (619)
T ss_dssp CCCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTC--------------------------------CBC----
T ss_pred CccccccC-------CCCcccceEECCCCCCCceEeCCchh--------------------------------eec----
Confidence 0000000 0001111111 121111112222211 000
Q ss_pred CCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceee-eec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 814 ~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
....+|.. ....+|+.+..+.|+..++....... .+. ..-..+..++|.+.++.++.+-...+.|+.+++..
T Consensus 307 ----~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g 380 (619)
T 3s94_A 307 ----ENGKTCKD--GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380 (619)
T ss_dssp ----TTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ----ccCcccCC--CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC
Confidence 11111111 12346777777888888887654321 121 12345789999985555555555678899999875
Q ss_pred ceeeeeecccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
......+........+|++...+. +.++-+..+.|.+.+++..... ... ... ......+++.|...+|..+
T Consensus 381 ~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~--~l~---~~~---l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK--ILI---SED---LEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE---CTT---CCSEEEEEEETTTTEEEEE
T ss_pred CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE--EEE---ECC---CCCeeeEEEEcCCCcEEEe
Confidence 433333333345678899986544 4555556788999998764221 111 111 1246899999974444443
Q ss_pred ---cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC-CCcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258 971 ---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus 971 ---~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
....|...+++.... ..+.. ..-.....|++++++..|+.+.. .+.|..++++.......+. +.-..
T Consensus 453 D~g~~~~I~r~~~dG~~~-~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-------~~l~~ 523 (619)
T 3s94_A 453 DWGEIPKIERAALDGSDR-VVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-------DKIPH 523 (619)
T ss_dssp ECSSSCEEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE-------CCCCS
T ss_pred cCCCCCEEEEEccCCCcc-EEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec-------cCCCC
Confidence 235777777654332 22221 22457789999998777776654 4679999986543321111 11112
Q ss_pred ccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1047 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1047 v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
... ++.. ++.+.++-...+.|..-+..+++
T Consensus 524 P~g--lav~--~~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 524 IFG--FTLL--GDYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp SCC--EEEE--TTEEEEECTTSSCEEEEESSSCC
T ss_pred cEE--EEEE--CCEEEEeecCCCeEEEEEcCCCc
Confidence 233 4433 23444554455678888877775
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1e-08 Score=123.61 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=58.9
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEE
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 917 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L 917 (1113)
|.|..||+.+++.+..+.. ...+....++. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998877653 33344555666 66788889999999999999999998886433 233446667788755
Q ss_pred EEE
Q 001258 918 VSS 920 (1113)
Q Consensus 918 ~s~ 920 (1113)
+..
T Consensus 535 v~~ 537 (677)
T 1kb0_A 535 VSV 537 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=1.1e-08 Score=111.94 Aligned_cols=228 Identities=12% Similarity=0.022 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1113)
Q Consensus 360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1113)
-..+.+|+|++..+++++..++.|..||..+++... +. +...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 346889999977788888889999999998875432 11 13479999999999987765
Q ss_pred CCCeEEEEEccCCceeeeeeeeec-c-cCCeeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCceeeEeeccCcC
Q 001258 440 SRHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 511 (1113)
Q Consensus 440 ~d~~i~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1113)
.++ |.+||..+++... +..... + ...+.+++++|+|+ ++++... .+.|..++ +++. ..+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcc
Confidence 444 9999998876432 211111 1 23689999999998 4444332 23455555 4543 333334445
Q ss_pred EEEEeeeecCCceEE-EEEecCCcEEEEEcC--CC-CCe--eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 512 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
...++|++ +++.+ ++.+.++.|.+||+. ++ ... ..+. .+.. .......++++++
T Consensus 181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE 240 (326)
T ss_dssp EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence 67788764 45555 455567899999986 32 110 0110 0000 0112334566666
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECC
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 639 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 639 (1113)
|+..++...++.|.+||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 666666666789999998 677777776543 358899998 888777665543
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=4.5e-08 Score=109.92 Aligned_cols=158 Identities=8% Similarity=0.042 Sum_probs=99.0
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecc-------cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 503 (1113)
++..+.+++.++.|..+|..+|+.+... .+... ...+.+.-... +. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVS-GG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEE-TT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceEe-CC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 4677888888999999999999876432 12111 22333222222 34 46777889999999999999887
Q ss_pred EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.............. . + ..++.++.++.|..+|..+++............ . ...... ....
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~~-------------~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGESA-------------PTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCC-------------CEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCCC-------------cEEE
Confidence 66543322111111 1 2 378888899999999999888777655432211 0 000000 0001
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1113)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1113)
+..+++++.++.|..+|..+++.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 23577788899999999999988877653
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1.4e-08 Score=122.66 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=58.8
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-eEEEEEcCCCCEE
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 917 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L 917 (1113)
|.|..||+.+++.+..+..+.. ...-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999998877764432 33335555 6678999999999999999999999888754332 2446777888754
Q ss_pred EE
Q 001258 918 VS 919 (1113)
Q Consensus 918 ~s 919 (1113)
+.
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=2.5e-08 Score=120.21 Aligned_cols=203 Identities=12% Similarity=0.138 Sum_probs=135.3
Q ss_pred eEEEEecCCCcEEEEEecCC-------------------cEEEEEcccceeeeeecc--cc-------cCeEEEEEcCCC
Q 001258 863 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1113)
Q Consensus 863 ~~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1113)
..++++| ++.+|.++..++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578898 677777777664 499999999998876653 31 122223334477
Q ss_pred ---CEEEEEeCCCcEEEEeCCCCccccccccccC--------CCC------------C----C---CCCCCceEEEccCC
Q 001258 915 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ 964 (1113)
Q Consensus 915 ---~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~i~~~~~spdg 964 (1113)
..|+.++.+|.|+++|..+++.......... .+. . + ....-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 6899999999999999999876432211000 000 0 0 00011367899998
Q ss_pred cEEEEE-cC-------------------------------------------CeEEEEeCCccceeeccccCCCCCCeeE
Q 001258 965 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1000 (1113)
Q Consensus 965 ~~l~~~-~d-------------------------------------------~~v~v~d~~~~~~~~~~~~~~h~~~v~~ 1000 (1113)
.++++. .+ +.|..||+.+++.+..+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 6799999999998877653 334555
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE-EEEEeC------------
Q 001258 1001 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE-FALGLS------------ 1067 (1113)
Q Consensus 1001 l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~-l~s~~~------------ 1067 (1113)
..++.++.+++.++.||.+++||..+++.+.++.... + ....+ +.|.+ +|++ +++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p--~~y~~-~G~~~v~~~~G~~~~~~~~~~~~ 552 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----G--VVAAP--STYMV-DGRQYVSVAVGWGGVYGLAARAT 552 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCC--EEEEE-TTEEEEEEEECCCHHHHHHCCSC
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----C--cccCC--EEEEe-CCEEEEEEeccCCcccccccccc
Confidence 6677788899999999999999999999999886321 2 22234 55555 5654 444332
Q ss_pred ----CCcEEEEeccC
Q 001258 1068 ----DGGVHVFEPLE 1078 (1113)
Q Consensus 1068 ----Dg~v~vW~~~~ 1078 (1113)
.+.+.+|.+..
T Consensus 553 ~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 553 ERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCCCCEEEEEEETC
T ss_pred ccCCCCeEEEEeccc
Confidence 36888888874
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.10 E-value=2.6e-08 Score=109.00 Aligned_cols=225 Identities=12% Similarity=-0.022 Sum_probs=144.7
Q ss_pred eEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258 754 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1113)
Q Consensus 754 i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~ 832 (1113)
..+.+|+|++..+ ++...++.|..|+... +...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence 4678899975544 4444568888887642 2111110 2346889999999988
Q ss_pred EEEEeCCeEEEEECCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEec------CCcEEEEEcccceeeeeecccc
Q 001258 833 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 902 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~ 902 (1113)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 55699999988765432221 123578999999 7877665442 24566666 45533 333344
Q ss_pred cCeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEE
Q 001258 903 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 977 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v 977 (1113)
.....++|+||++.|+.+ +.++.|.+|+++ ++ .............. ...+..++++++|.++++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 567899999999877554 557889999986 44 22111111111111 1245789999999877774 5688999
Q ss_pred EeCCccceeeccccCCCCCCeeEEEEC-CCCCEEEEEeCC
Q 001258 978 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1016 (1113)
Q Consensus 978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~D 1016 (1113)
|+. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666654 235579999998 898877665543
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=8.7e-09 Score=112.83 Aligned_cols=250 Identities=11% Similarity=-0.025 Sum_probs=153.8
Q ss_pred CeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe-------
Q 001258 371 QTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------- 439 (1113)
Q Consensus 371 ~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------- 439 (1113)
.+++++...++ +|.+.|..+++.+.+. -.+.. + .+++||||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~~-P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAFL-S--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECTT-C--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCCC-C--ceEECCCCCEEEEEcccccccc
Confidence 44566666555 8889999999988752 22332 4 799999999999886
Q ss_pred ---CCCeEEEEEccCCceeeeeeeeecc-------cCCeeEEEEcCCCCeeEEEEec--CCCcEEE--EeCCCCceeeEe
Q 001258 440 ---SRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCG--DDKTIKV--WDATNGAKQYIF 505 (1113)
Q Consensus 440 ---~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s--~d~~i~i--wd~~~~~~~~~~ 505 (1113)
.++.|.+||+.+++.+.. +.-. ......++|+|||++ ++.+. .+..|.+ +|+.+ +..+
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~---I~v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i 162 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLT 162 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred cCCCCCEEEEEECCCCCEEEE---EECCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEE
Confidence 368899999999987764 3222 134678999999996 44443 3567888 99877 4444
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-----CCCee----eeeCCCCc----------------eEEEE
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRV----DYEAPGRW----------------CTTMA 560 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~----------------v~~~~ 560 (1113)
.-- +. ..+.+... ..+++.+.||.+.+.|+.+ ++... .+.....+ +..+.
T Consensus 163 ~v~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD 237 (368)
T 1mda_H 163 KSA-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD 237 (368)
T ss_dssp ECS-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEE
T ss_pred ECC-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEE
Confidence 311 11 11223333 2345556677777777765 11110 00000111 11111
Q ss_pred EccCCCeEEe------------ccccCceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEEEEccCCCCC
Q 001258 561 YSADGTRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLP 619 (1113)
Q Consensus 561 ~s~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~ 619 (1113)
.......+.. +........++++|++++++.+.. ++.+.++|+.+++.+..+....
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--- 314 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--- 314 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---
Confidence 1100000000 000111122678999988887543 2356699999999888876543
Q ss_pred CcCeEEECCCCC-EEEEEE-CCCcEEEEEcCCCccceeccc
Q 001258 620 ASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 658 (1113)
Q Consensus 620 ~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 658 (1113)
....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 368999999997 566666 5899999999998 5555554
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=1.7e-08 Score=109.58 Aligned_cols=229 Identities=11% Similarity=0.033 Sum_probs=150.1
Q ss_pred cCceEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258 751 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~ 829 (1113)
........|+++++.| ++...++.+..|+... .... +.. +...+..++++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------------------~~~~--~~~--~~~~~~gl~~d~d 96 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------------------TVDV--LLD--ATAFTNGNAVDAQ 96 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------------------CEEE--EEE--SCSCEEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------------------CEEE--EeC--CCCccceeeECCC
Confidence 3456788999999854 5555568888886421 1100 000 3456789999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeee---cCC-CCCeeEEEEecCCCcEEEE----Eec-------------CCcEEEE
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATF---MPP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY 887 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~-~~~i~~l~~s~~d~~~la~----g~~-------------dg~v~iw 887 (1113)
|+++++.. ++.|.+|+.+ ++..... .+. ...+..+++++ +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99776655 5789999986 4432221 111 13467899999 8888876 332 2567778
Q ss_pred EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1113)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 961 (1113)
|..+++..... .....+.++|+||++.|+.+... +.|.+|++..+............ ......++++
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence 87666654433 44567899999999988777665 68999998764311111111111 1245689999
Q ss_pred cCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus 962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
++|.+.++. .+.|.+|+. +++.+..+... ..+.+++|+++++.|+.++.++..+
T Consensus 248 ~~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999955544 456999998 46666665532 2589999999999988888664433
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=1.2e-07 Score=106.47 Aligned_cols=214 Identities=10% Similarity=0.035 Sum_probs=128.5
Q ss_pred EEEEe-CCeEEEEECCCCceeeeecCCCCCe-----eEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc---
Q 001258 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--- 903 (1113)
Q Consensus 833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--- 903 (1113)
+++++ ++.|..+|..+++.+..+....... ...... + ..+++++.+|.|..+|..+++.+........
T Consensus 146 v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 146 VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 33343 6667777777776665544322111 222222 3 3577788899999999999988766543211
Q ss_pred ----CeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258 904 ----RITGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1113)
Q Consensus 904 ----~V~~l~~s~--d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v 977 (1113)
.+..+..+| .+..+..++.++.+..+|..+++...... .. ....+.. .++..++...++.+..
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----~~------~~~~~~~-~~~~l~~~~~~g~l~~ 291 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----LG------SVNDFIV-DGNRIYLVDQNDRVMA 291 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----CC------CEEEEEE-ETTEEEEEETTCCEEE
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----CC------CCCCceE-ECCEEEEEcCCCeEEE
Confidence 000000111 24677778889999999999876542211 11 1223332 2444444468889999
Q ss_pred EeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc-ceEEEEeC
Q 001258 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH-PLVIAAHP 1056 (1113)
Q Consensus 978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~-~i~~~~~p 1056 (1113)
+|..+++.+....... ...+..+.. .+..|+.++.+|.|.++|..+++.+.+.... ...+. ...+
T Consensus 292 ~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-------~~~~~~~~~~---- 357 (376)
T 3q7m_A 292 LTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-------SSGFQTEPVA---- 357 (376)
T ss_dssp EETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC-------TTCBCSCCEE----
T ss_pred EECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC-------CCcceeCCEE----
Confidence 9999998865543111 222333333 3567888899999999999999998776521 11121 1112
Q ss_pred CCCCEEEEEeCCCcEEEEe
Q 001258 1057 QEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1057 ~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
.+..|+.++.||.|+.|+
T Consensus 358 -~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 -ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeCCCEEEEEe
Confidence 245888889999999987
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=2.3e-08 Score=120.79 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=115.0
Q ss_pred EEEEecCCCcEEEEEecCCc-------------------EEEEEcccceeeeeecc--cc-------cCeEEEEEcCCCC
Q 001258 864 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 915 (1113)
Q Consensus 864 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 915 (1113)
.++++| +..++++++.++. |..||..+|+.+..++. |. ..+.......+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578898 6778888887764 99999999998877654 22 1222222223565
Q ss_pred ---EEEEEeCCCcEEEEeCCCCcccccccccc------------------------CCCC----CC---CCCCCceEEEc
Q 001258 916 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR----TP---TAQSDTRVQFH 961 (1113)
Q Consensus 916 ---~L~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~----~~---~~~~i~~~~~s 961 (1113)
.|+.++.+|.++++|..+++......... ..+. .+ ....-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999987642111000 0000 00 00011347899
Q ss_pred cCCcEEEEE-c---------------------------------------------CCeEEEEeCCccceeeccccCCCC
Q 001258 962 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS 995 (1113)
Q Consensus 962 pdg~~l~~~-~---------------------------------------------d~~v~v~d~~~~~~~~~~~~~~h~ 995 (1113)
|+...+++. . ++.|..||+.+++.+..... .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~ 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence 988877763 1 26799999999998877653 2
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
.++..-.++..+.++++|+.||.|+.||.++|+.+.++.
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 233444666788899999999999999999999998876
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=7.2e-09 Score=126.37 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=156.2
Q ss_pred ccCceEEEEEeCCCceEEEeec-----CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258 750 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1113)
Q Consensus 750 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l 824 (1113)
+...+..++|||||++++.+.. ...|++||+. +|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence 4457888999999998875433 2456666655 444322211 11113567
Q ss_pred EEecCCCEEEEEe-CC-------------eEEEEECCCCce--eeee--cC-CCCCeeEEEEecCCCcEEEEEec----C
Q 001258 825 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT--MATF--MP-PPPAATFLAFHPQDNNIIAIGMD----D 881 (1113)
Q Consensus 825 ~~s~~~~~l~~~s-dg-------------~i~vwd~~~~~~--~~~~--~~-~~~~i~~l~~s~~d~~~la~g~~----d 881 (1113)
+|+ ||+.|+.++ +. .|++|++.+... ...+ .. +......+.||| ||++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 43 399999987643 2223 32 344578899999 7887765443 2
Q ss_pred CcEEEEEcccce-eeeeecccccCeEEEEEcCCCCEEEEE-eCC---CcEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258 882 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSS-GAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1113)
Q Consensus 882 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~L~s~-s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1113)
..|+++|+.++. ....+..+.+..... |+++|..|+.. ..| +.|..|++.++.......+. . +.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~-~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--P-ERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C-CCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--c-CCC---CEE
Confidence 489999998763 455666677666665 66666655544 443 57899999886542222111 1 111 222
Q ss_pred eEEEccCCcEEEEE--cCC--eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC----CcEEEEecCCCc
Q 001258 957 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1028 (1113)
Q Consensus 957 ~~~~spdg~~l~~~--~d~--~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~vwd~~~~~ 1028 (1113)
.|++++++|+.. .++ .|.+|++.++.. ..+.. .+...+..+.++++++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 899999988873 444 689999885543 33332 234567788889998877766555 889999998876
Q ss_pred ee
Q 001258 1029 LR 1030 (1113)
Q Consensus 1029 ~~ 1030 (1113)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.1e-08 Score=112.69 Aligned_cols=177 Identities=14% Similarity=0.151 Sum_probs=109.3
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
..+..+|. |..++.++.|..|| .+++.+. ....+...+.++...+++. +..++.+ |..+|. +++.+..+
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence 34444554 55566778899999 7777544 2333444567888887776 4555544 888885 67665544
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
...........+. + ..++.++.++.|..+|.. +............+.++...+++.
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~------------------- 149 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT------------------- 149 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence 3332222222222 2 367788889999999887 555555444433334444444443
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1113)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 646 (1113)
++.++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++.. +.|..+|
T Consensus 150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d 201 (330)
T 3hxj_A 150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN 201 (330)
T ss_dssp ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence 7778888999999998 77776665442 346677777777755443 6777776
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=7.2e-08 Score=105.37 Aligned_cols=233 Identities=11% Similarity=0.120 Sum_probs=148.0
Q ss_pred EEe--cCCCEEEEEe--CCeEEEEECCCC----ceeeeec-------CCCCCeeEEEEecCCCcEEEEEecC------Cc
Q 001258 825 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SS 883 (1113)
Q Consensus 825 ~~s--~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~d------g~ 883 (1113)
.++ +++++|++.+ ++.|.|+|+.+. +..++++ ........+.++| +| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899999887 689999999754 4445552 1112356678889 77 66666655 78
Q ss_pred EEEEEcccceeeeeecccc---cCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCccccccc
Q 001258 884 IQIYNVRVDEVKSKLKGHS---KRITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRF 941 (1113)
Q Consensus 884 v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~d~~~L~s~s-------------------~D~~v~iwd~~~~~~~~~~~ 941 (1113)
|.++|..+++.+.++..-. .--..+.|+|+++.+++.. .+.+|.+||+.+++....
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-- 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-- 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--
Confidence 9999999999998886322 2234588899999999885 368899999998543221
Q ss_pred cccCCCCCCCCCCCceEEE--ccCCcEEEEE-------cCCeEEEEeCCcccee--ecc--ccC---C-----------C
Q 001258 942 LQIPTGRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQW--VPR---E-----------S 994 (1113)
Q Consensus 942 ~~~~~~~~~~~~~i~~~~~--spdg~~l~~~-------~d~~v~v~d~~~~~~~--~~~--~~~---~-----------h 994 (1113)
+...... .....+.| +|+|+++.++ .+++|.+|..+.++.. ..+ ... + -
T Consensus 244 I~vg~~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEEN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 2221000 12344545 9999988873 3457776655433211 100 000 0 0
Q ss_pred CCCeeEEEECCCCCEEEEEeC-CCcEEEEecC---CCceeeecCCCccc-----CCCcccCccceEEEEeCCCCCEEEEE
Q 001258 995 SAPITHATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~---~~~~~~~~~~~~~~-----~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
...+..|.+|+||++|+++.. .+.|.+||+. +.+++.++...... +.|......|-.+.++| ||++|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999988775 5889999985 33555555422100 01111112344588888 78888887
Q ss_pred e
Q 001258 1066 L 1066 (1113)
Q Consensus 1066 ~ 1066 (1113)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=1.4e-07 Score=103.03 Aligned_cols=238 Identities=10% Similarity=0.082 Sum_probs=149.5
Q ss_pred CCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-C
Q 001258 761 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 838 (1113)
Q Consensus 761 ~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d 838 (1113)
++++++++.+. ++.|.|+|+......+.-. ... + ...+... . .......+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~--k~i-----e--~~~~~~~--~---g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII--KVI-----E--PEEVKKV--S---GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE--EEE-----C--HHHHHHH--H---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceee--eee-----c--hhhcccc--c---CCCcccceeECCCe-EEEEcCCC
Confidence 77787776555 5889999975322111100 000 0 0000000 0 11134567888999 555543 4
Q ss_pred ------CeEEEEECCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEe-------------------cCCcEEEEEcc
Q 001258 839 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR 890 (1113)
Q Consensus 839 ------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~la~g~-------------------~dg~v~iwd~~ 890 (1113)
|.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6899999999999988863322 234578899 788777774 36799999999
Q ss_pred cceeeeeeccc--ccCeEEEEE--cCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCCC----CCC------
Q 001258 891 VDEVKSKLKGH--SKRITGLAF--SHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTG----RTP------ 950 (1113)
Q Consensus 891 ~~~~~~~l~~h--~~~V~~l~~--s~d~~~L~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~----~~~------ 950 (1113)
+++.++++..- ......+.| +|+++++..++. +++|.+|..+.++......+.+... ..+
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 98888877642 123455655 999999887774 5688877665432211111111110 000
Q ss_pred --CCCCCceEEEccCCcEEEEE--cCCeEEEEeCCc---cceeeccccCCC------------CCCeeEEEECCCCCEEE
Q 001258 951 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK---LECVKQWVPRES------------SAPITHATFSCDSQLVY 1011 (1113)
Q Consensus 951 --~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~---~~~~~~~~~~~h------------~~~v~~l~~s~dg~~l~ 1011 (1113)
.......+.+|+||++|.++ ..+.|.+||+.. .+.+.....++. ......++++|||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 01346889999999999996 567999999853 355555544321 11368899999999999
Q ss_pred EEe
Q 001258 1012 ACF 1014 (1113)
Q Consensus 1012 s~~ 1014 (1113)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
No 240
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.00 E-value=0.00018 Score=84.97 Aligned_cols=497 Identities=9% Similarity=-0.022 Sum_probs=249.7
Q ss_pred ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1113)
Q Consensus 355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1113)
......+.+++|++.+.+++.+-...+.|..+++........ ++...-.....+++.+.++.
T Consensus 36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ 97 (619)
T 3s94_A 36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEK 97 (619)
T ss_dssp CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTE
T ss_pred EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCE
Confidence 335567889999998887666655678888888875421110 12222246889999996665
Q ss_pred EEEE-eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEe-eccCcC
Q 001258 435 FGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAP 511 (1113)
Q Consensus 435 las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~~h~~~ 511 (1113)
|..+ ...+.|.+.++.+..... .+.........|++.|.+.. ++++- +..+.|...++. |.....+ ...-..
T Consensus 98 ly~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~ 172 (619)
T 3s94_A 98 LYWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYW 172 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCC
Confidence 5554 557899999998654221 12234456789999998664 33333 334667666754 4333333 223445
Q ss_pred EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1113)
...+++.+.. +.+.++-...+.|...|++................. +++..+ ..+++
T Consensus 173 P~Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g---------------------i~~~~~-~ly~t 229 (619)
T 3s94_A 173 PNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA---------------------LTLFED-ILYWT 229 (619)
T ss_dssp EEEEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCC---------------------EEESSS-EEEEE
T ss_pred CcEEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE---------------------EEEeCC-EEEEe
Confidence 6777876533 345555556677888777542221111101111112 233222 22333
Q ss_pred EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECC--------CcEEEEEcCCCccceeccccccc
Q 001258 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAY 662 (1113)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~ 662 (1113)
-...+.|...|..+++....+.... .....+.+. |..+-. +.+. ..+.+......
T Consensus 230 d~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~------------ 293 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKP------------ 293 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTT------------
T ss_pred cCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCC------------
Confidence 3456778888887776655543221 112233322 100000 0000 00111000000
Q ss_pred cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCC-ccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1113)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1113)
. ..|...... .+..+ ..+......++..+..+.|+..++........
T Consensus 294 -----------~---------------~~C~C~~g~----~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~-- 341 (619)
T 3s94_A 294 -----------F---------------YQCACPTGV----KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDI-- 341 (619)
T ss_dssp -----------S---------------EEEECCTTC----CBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCE--
T ss_pred -----------C---------------ceEeCCchh----eecccCcccCCCCceEEEEEcccceEEEecCCCcccee--
Confidence 0 000000000 00000 01111112222223345677667654322111
Q ss_pred ecccCcccccCceEEEEEeCCCceEEEee-cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258 742 SLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1113)
Q Consensus 742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 820 (1113)
.+.+. .-..+.+++|.+.+..|+.+. ..+.|+.+++..... ... ... .-..
T Consensus 342 ~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~v-~~~--~~~~ 393 (619)
T 3s94_A 342 VLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QFV-VTA--QIAH 393 (619)
T ss_dssp ECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EEE-ECS--SCSC
T ss_pred EEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EEE-EEC--CCCC
Confidence 11111 234577899998665555544 457777766542100 000 000 2245
Q ss_pred ccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEcccceeeee
Q 001258 821 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~ 897 (1113)
+..++++..+..|..+. .+.|.+.+++.......+...-.....+++.|..|.+..+-. ..+.|...++........
T Consensus 394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l 473 (619)
T 3s94_A 394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL 473 (619)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE
Confidence 67899998777777665 588999998765433333334456899999994455544432 235677666653222222
Q ss_pred ecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCe
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ 974 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~ 974 (1113)
....-...++|++.+++..|..+. ..+.|...+++...... ... +.. .....+++..+ +|+.+ ..+.
T Consensus 474 ~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glav~~~--~ly~tD~~~~~ 543 (619)
T 3s94_A 474 VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVE---DKI---PHIFGFTLLGD--YVYWTDWQRRS 543 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEE---CCC---CSSCCEEEETT--EEEEECTTSSC
T ss_pred EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--Eec---cCC---CCcEEEEEECC--EEEEeecCCCe
Confidence 233345678999998777776665 45678888887643211 111 111 12345665444 44443 4556
Q ss_pred EEEEeCCcc
Q 001258 975 LAIFETTKL 983 (1113)
Q Consensus 975 v~v~d~~~~ 983 (1113)
|...+..++
T Consensus 544 I~~~~k~~g 552 (619)
T 3s94_A 544 IERVHKRSA 552 (619)
T ss_dssp EEEEESSSC
T ss_pred EEEEEcCCC
Confidence 666666655
No 241
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.99 E-value=0.0002 Score=84.73 Aligned_cols=504 Identities=8% Similarity=-0.060 Sum_probs=261.4
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
-..+.+++|++.+..+..+-..++.|..+++....... +..........+++.+.+..|..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~ 96 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW 96 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence 35688999999888777777778899999887543221 11111235678899876665554
Q ss_pred E-eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258 438 A-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1113)
Q Consensus 438 ~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1113)
+ ...+.|.+.++.+..... .+...-.....|++.|.... ++++- +..+.|...++.... ...+...-.....+
T Consensus 97 tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 97 ADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGL 171 (628)
T ss_dssp EETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEE
T ss_pred EECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceE
Confidence 4 456889999987654221 12234456789999997664 33333 345678888865433 33333344566778
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
++.+.. +.+.++-...+.|...|++.... ..+.........+++ .. +..+++-...
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav---------------------~~-~~ly~tD~~~ 227 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQ---------------------YQ-DYIYWTDWSR 227 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEE---------------------ET-TEEEEEETTT
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEE---------------------EC-CEEEEecCCC
Confidence 876533 34555556677888888865333 222211122223332 22 2223344457
Q ss_pred CcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1113)
+.|...|..+++....+.... .....+.. ++..+. ... ++.. -.+... .. +
T Consensus 228 ~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---------------~~n-~C~~-~ng~C~-~~--------C 279 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---------------GWN-ECAS-SNGHCS-HL--------C 279 (628)
T ss_dssp TEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---------------CCC-TTTT-TGGGCS-SE--------E
T ss_pred CEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---------------cce-Eecc-CCCCcc-hh--------h
Confidence 788888877776655554221 11222222 111100 000 0000 000000 00 0
Q ss_pred cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1113)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1113)
+.. +.+.+.. .+..|. .+.. ...
T Consensus 280 ~~~----------------------------------~~~~~~C-~C~~g~----~l~~------------------d~~ 302 (628)
T 4a0p_A 280 LAV----------------------------------PVGGFVC-GCPAHY----SLNA------------------DNR 302 (628)
T ss_dssp EEE----------------------------------TTTEEEE-ECSTTC----EECT------------------TSS
T ss_pred hcC----------------------------------CCCCeeE-EcCCCc----Eecc------------------cCC
Confidence 000 0000000 000010 0000 000
Q ss_pred EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEE
Q 001258 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1113)
Q Consensus 755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 834 (1113)
+|. .+ ..+++.+. ...|+-..+..... ....+. +. .-..+.+++|++.+..|.
T Consensus 303 ~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~~------------------~~~~l~--~~---~~~~~~~ld~d~~~~~iy 355 (628)
T 4a0p_A 303 TCS--AP-TTFLLFSQ-KSAINRMVIDEQQS------------------PDIILP--IH---SLRNVRAIDYDPLDKQLY 355 (628)
T ss_dssp CEE--CC-SSEEEEEE-TTEEEEECCCTTCC------------------CCEECC--CT---TCSCEEEEEEETTTTEEE
T ss_pred cCc--cc-cceeeeec-cceEEEEecccccC------------------ceEEEE--eh---hcCCceEEEEecCCCeEE
Confidence 011 01 22233322 23333222211000 000000 10 234577899999888888
Q ss_pred EEe--CCeEEEEECCCCceeeeecC------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee-cccccCe
Q 001258 835 SAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRI 905 (1113)
Q Consensus 835 ~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V 905 (1113)
.+. .+.|..+++........+.. ....+..+++....+++..+-+..+.|.+.++. |+....+ .......
T Consensus 356 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~P 434 (628)
T 4a0p_A 356 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRP 434 (628)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCE
T ss_pred EEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCce
Confidence 776 57899998875443333332 234678999998445566666677899999986 4444333 3345678
Q ss_pred EEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeC
Q 001258 906 TGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 980 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~ 980 (1113)
.+|++.|...+|..+.. .. .|...+++...... .. .... .....+++++++..|+.+ ..+.|..+++
T Consensus 435 r~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LF---FSGL---SKPIALALDSRLGKLFWADSDLRRIESSDL 506 (628)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EE---eccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 99999994444443332 22 46666666532211 11 1111 245889999988777765 4578999998
Q ss_pred CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+.. ....+.. ........+++.. +.+..+=...+.|...|..+|+....+
T Consensus 507 dG~-~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 507 SGA-NRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TSC-SCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCC-ceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 543 3333331 2234567777754 444444445577888888777654433
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.95 E-value=3.5e-08 Score=108.60 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=134.1
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1113)
Q Consensus 363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 442 (1113)
+..+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|.+++ ++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence 344556676 56677888999999 88876532 111233567777777776544 4333
Q ss_pred eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCC
Q 001258 443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 522 (1113)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 522 (1113)
|..+|. +++.+. .+...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. ..+
T Consensus 80 -l~~~d~-~g~~~~---~~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~ 147 (330)
T 3hxj_A 80 -VYAINP-DGTEKW---RFDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED 147 (330)
T ss_dssp -EEEECC-CGGGGG---GSCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred -EEEECC-CCcEEE---EEECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence 888886 555433 122222223333443 44 36777888999999988 8777666655444444443 334
Q ss_pred ceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEE
Q 001258 523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 602 (1113)
Q Consensus 523 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 602 (1113)
+ .++.++.++.|..+|.. +.....+......+.++...+++. +..++ +.|..||
T Consensus 148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~----------------------l~v~t--~~l~~~d 201 (330)
T 3hxj_A 148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT----------------------IYFGS--DKVYAIN 201 (330)
T ss_dssp S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC----------------------EEEES--SSEEEEC
T ss_pred C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE----------------------EEEEe--CEEEEEC
Confidence 4 46778888999999987 555555554444444444444443 55555 8899999
Q ss_pred CCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258 603 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1113)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 646 (1113)
.+++......... ..+.++...++|.+. +++.++.+..++
T Consensus 202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~ 241 (330)
T 3hxj_A 202 -PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAIN 241 (330)
T ss_dssp -TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred -CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEEC
Confidence 6777776665432 357788888887544 455667777665
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=5.6e-08 Score=110.22 Aligned_cols=240 Identities=12% Similarity=0.079 Sum_probs=162.1
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeeecCC-CCCeeEEEE-e-cCCCcEEEEEe------------------cCCcE
Q 001258 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------DDSSI 884 (1113)
Q Consensus 828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~la~g~------------------~dg~v 884 (1113)
+||+++.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4999999887 578999999999988754322 345788888 4 8 777887774 34589
Q ss_pred EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001258 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------------------QL 926 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--------------------------------------~v 926 (1113)
.+.|..+.+.+.++.--. ....++++|||+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988887775322 456788999999999988653 35
Q ss_pred EEEeCCCCcccccc-ccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc------------eeecccc
Q 001258 927 CVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------------CVKQWVP 991 (1113)
Q Consensus 927 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~------------~~~~~~~ 991 (1113)
.+.|..+.+. .. ...+..+ ....++.++|||++++++ .+.+|.++|+.+.+ .+.....
T Consensus 257 ~VID~~~~~~--~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 257 KVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEEECSGGGC--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EEEeCcccCC--ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 5555554110 01 0111112 245789999999999985 66789999999764 2333332
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC----------CceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258 992 RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~----------~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
......++|++||...++...|+.|.+||+++ .+.+.++..+ +.| ||...-. ....+| ||++
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~~~~--g~t~~~-DGk~ 401 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLKTVM--GETLDA-TNDW 401 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEEETT--TTSTTC-CSSE
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccceecc--ceEeCC-CCCE
Confidence 45789999999994445566899999999987 4566665532 122 3322111 133456 8899
Q ss_pred EEEEeCCC--cE-----------EEEeccCCCcccc
Q 001258 1062 FALGLSDG--GV-----------HVFEPLESEGKWG 1084 (1113)
Q Consensus 1062 l~s~~~Dg--~v-----------~vW~~~~~~~~~~ 1084 (1113)
|++...-. .+ .++|++.+++++.
T Consensus 402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred EEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 88765422 23 7899977774443
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=4.4e-10 Score=125.32 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=107.3
Q ss_pred CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCC
Q 001258 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 950 (1113)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 950 (1113)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++.............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 456888999999999999999999988876 5666666667888888888999999999988765321111100000
Q ss_pred CCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 951 ~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
.....+..++ .+++ +.++.+..||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.
T Consensus 84 ----~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 ----QASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp ----TTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ----ccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 0011112344 4444 6789999999999998776653 11 245677889999999999999999999988
Q ss_pred eeecCCCcccCCCcccCccceEEEEeCCCC---CEEEEEeCCCcEEEEeccCCCccccCC
Q 001258 1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEP---NEFALGLSDGGVHVFEPLESEGKWGVP 1086 (1113)
Q Consensus 1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~---~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1086 (1113)
+.++....+ .+ .++.+ +. ..+++++.||.|+.||..+|+..|...
T Consensus 153 ~W~~~~~~~---------~~--~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY---------AA--SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEEE---------CC--BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEeEecccc---------cC--ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 766541111 11 11111 11 467778899999999999999777653
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.84 E-value=1.2e-09 Score=121.84 Aligned_cols=184 Identities=8% Similarity=-0.021 Sum_probs=109.3
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
++..+++++.|+.|..||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 688999999999999999999987763 333 4566666677777 577888999999999999998777654321
Q ss_pred CEEEEeeeecC-CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258 511 PVYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1113)
Q Consensus 511 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1113)
... ..++.- ++..+++++.|+.|+.||..+++.+..+..+.. .. ++|++..+
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~---------------------~~p~~~~v 133 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DS---------------------LSPSTSLL 133 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----cc---------------------ccccCCEE
Confidence 110 001111 235788888999999999998877765543321 11 22345568
Q ss_pred EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC---CEEEEEECCCcEEEEEcCCCcc
Q 001258 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNGIKILATSDGIR 652 (1113)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~ 652 (1113)
++++.++.|+.||..+|+.+..+.... .....+..+. ..+++++.+|.+..||..+++.
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 889999999999999998776654321 1233344432 4577788999999999998843
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.80 E-value=5.6e-08 Score=110.22 Aligned_cols=328 Identities=11% Similarity=0.098 Sum_probs=186.3
Q ss_pred EEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-e-------EEEEE-------------ccCCCeEEeccccCceeEEEec
Q 001258 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-C-------TTMAY-------------SADGTRTYQGFRKRSLGVVQFD 583 (1113)
Q Consensus 525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v-------~~~~~-------------s~~~~~~~~~~~~~~i~~~~~~ 583 (1113)
.+.||+..|.++++-+.+++.+..+..-... - .+... ..+|...+ ..+.......|
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~---~~gd~hh~~~s 93 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIH---DNGDLHHVHMS 93 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSC---CCCCBCCEEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceec---ccCCCCccccC
Confidence 3678889999999999888776654321110 0 00000 01111000 01111223343
Q ss_pred C-----CCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-C-CCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258 584 T-----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-N-KDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1113)
Q Consensus 584 ~-----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1113)
. ||++++... .++.|.+.|+.+.++...+..... .....+++ + |+++++++++.... =+ ..++ ..+.
T Consensus 94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~-p~--~~dg-~~l~ 168 (595)
T 1fwx_A 94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDET-PL--VNDG-TNME 168 (595)
T ss_dssp EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCE-ES--SCSS-SSTT
T ss_pred CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEeccccc-cc--CCCC-cccc
Confidence 3 777777765 466799999999998886654332 24567887 5 99999988864311 00 0011 0000
Q ss_pred ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1113)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1113)
. ....++.+.+.|..+.+
T Consensus 169 ~--------------------------------------------------------------~~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 169 D--------------------------------------------------------------VANYVNVFTAVDADKWE 186 (595)
T ss_dssp C--------------------------------------------------------------GGGEEEEEEEEETTTTE
T ss_pred c--------------------------------------------------------------ccccCceEEEEECCCCe
Confidence 0 00011223333333211
Q ss_pred CCCcceecccCcccccCceEEEEEeCCCceEEEeecC---------------CeEEEEEccccc-cCCCCceeeeecCee
Q 001258 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---------------AIHLLWKWQRTE-RNSSGKATASVAPQL 799 (1113)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~vw~~~~~~-~~~~~~~~~~~~~~l 799 (1113)
. ...+.. ...-..++++|+|+++++++.+ ..+.+.++.+.. ..++|+...-..+.+
T Consensus 187 v---~~qI~V-----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 187 V---AWQVLV-----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp E---EEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred E---EEEEEe-----CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 0 001100 0122456677888877777754 236666655431 222333332345667
Q ss_pred cCCCC--ccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCc------------eeeeecCCCCCee
Q 001258 800 WQPPS--GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------TMATFMPPPPAAT 863 (1113)
Q Consensus 800 w~~~~--g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~ 863 (1113)
.|..+ +......+. -.....++.++|||++++++. +++|.++|+.+.+ ....+. -.....
T Consensus 259 ID~~~~~~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~ 334 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL 334 (595)
T ss_dssp EECSGGGCCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred EeCcccCCceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence 77776 433111111 234567899999999999987 6899999998653 222332 234578
Q ss_pred EEEEecCCCcEEEEEecCCcEEEEEccc----------ceeeeeecccccCe-----EEEEEcCCCCEEEEEeC---CCc
Q 001258 864 FLAFHPQDNNIIAIGMDDSSIQIYNVRV----------DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQ 925 (1113)
Q Consensus 864 ~l~~s~~d~~~la~g~~dg~v~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~s~d~~~L~s~s~---D~~ 925 (1113)
.++|+| +|....+...|++|.+||+.+ .+.+.++..|..+- .++.++|||++|+++.. |+-
T Consensus 335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 899999 776666677899999999987 55677776664432 22345799999999864 442
Q ss_pred ----------EEEEeCCCCc
Q 001258 926 ----------LCVWSSDGWE 935 (1113)
Q Consensus 926 ----------v~iwd~~~~~ 935 (1113)
-.++|+.+++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 1788886544
No 247
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.72 E-value=0.0021 Score=79.11 Aligned_cols=535 Identities=12% Similarity=0.073 Sum_probs=270.3
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
...|.++....+|. |-.|+.+| +..||..+++-.. + .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence 45688988888886 44555554 7889987653211 0 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCceeeeeeee-e-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-ecc----Cc
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA 510 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h----~~ 510 (1113)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |... -+..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 5555 47888987755321 1000 0 1134688888888887 333 4433 4778887666532211 111 12
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
.|.++.. +.++..|..|+. +-+..+|..+............ .+..+....++. |.
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~---------------------~i~~i~~d~~g~-lW 246 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNN---------------------SIKSLALDGNGD-LL 246 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEE---------------------EEEEEEECTTCC-EE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCC---------------------eEEEEEEcCCCC-EE
Confidence 3777763 333344444553 3477777654321111000111 233344444444 45
Q ss_pred EEecCCcEEEEECCCCceEEEEccCC-----CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1113)
.|+. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. +. ....+
T Consensus 247 igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~-------- 312 (758)
T 3ott_A 247 AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI-------- 312 (758)
T ss_dssp EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE--------
T ss_pred EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE--------
Confidence 5554 457888887665432221100 112466777777776555 34445 443321 11 01000
Q ss_pred ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1113)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1113)
.... .
T Consensus 313 ----------------------------------------------------------------~~~~-----------~ 317 (758)
T 3ott_A 313 ----------------------------------------------------------------PISQ-----------I 317 (758)
T ss_dssp ----------------------------------------------------------------EHHH-----------H
T ss_pred ----------------------------------------------------------------eccc-----------C
Confidence 0000 0
Q ss_pred CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1113)
Q Consensus 746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~ 825 (1113)
........|.++....+|...+. +.+| +..++....... .+..+..... ...-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence 00002245777888888885554 4455 333432211000 0000100000 0000234688888
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeee--cC----CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc------e
Q 001258 826 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E 893 (1113)
Q Consensus 826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~------~ 893 (1113)
-..+|++.+.. ++.|..||..+++...-. .. ....|.++.... +++ |-+|+..+-|.++|..+. .
T Consensus 380 ~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence 88888766544 678999998876543221 11 123477777765 554 555777777888886531 1
Q ss_pred ee--eeec---c-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258 894 VK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1113)
Q Consensus 894 ~~--~~l~---~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l 967 (1113)
.. ..+. + ....|.++...++|++.+.++..+-|..+|..+++... ...........+.++....+|...
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence 11 1111 1 12358999999999877644444458889987644321 111101101245677778888877
Q ss_pred EEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258 968 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus 968 ~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
+.+. +.+..|+..+++....-...-....|.++... +|. |..++.+| +..+|..+.+... +. .+. ...
T Consensus 532 igt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~---~~~ 599 (758)
T 3ott_A 532 VGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTN---KRF 599 (758)
T ss_dssp EEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CC---CCC
T ss_pred EEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCC---Cce
Confidence 6654 56888998766543211000113568888763 554 55555566 7778888765432 21 111 122
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
. ...+...+| .|..|+.+| +..++...
T Consensus 600 ~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 600 T--SLLFDPKED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp S--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred e--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence 2 233333355 666667676 55666654
No 248
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.71 E-value=0.0016 Score=82.26 Aligned_cols=175 Identities=7% Similarity=-0.003 Sum_probs=96.6
Q ss_pred cEEEEEcccceeeeeecc-cccCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCccccccccccCCC
Q 001258 883 SIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1113)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~L~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1113)
.|++.|-.+++.+..+.- ....+.+++ |..+ ..+|+.|. ..|.|.++++..++. +........
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~- 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVK- 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEES-
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcC-
Confidence 366677666666544432 122344444 4333 46788775 347899999874321 111111111
Q ss_pred CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec--C
Q 001258 948 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--A 1025 (1113)
Q Consensus 948 ~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~--~ 1025 (1113)
+.+++++-- +| +|+++-..++++|++...+.++ .....+. .|..+.....+.+++.|..-..|.++.+ .
T Consensus 886 -----g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 886 -----GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp -----SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred -----CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 345555432 34 6777777899999998665433 1111111 2333344345778888887777777554 3
Q ss_pred CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
.+++...-. . -+...++ ++.|.. ...++.+..+|+|++.....
T Consensus 957 ~~~L~~~a~--D----~~~~~vt--a~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 EGNFEEIAR--D----FNPNWMS--AVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTEEEEEEE--C----CSCBCEE--EEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred CCeEEEEEe--e----cccccEE--EEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 333332111 1 1223344 455553 35888899999999998765
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=5.1e-06 Score=99.92 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=112.3
Q ss_pred EEEEecCCCcEEEEEecCC-------------------cEEEEEcccceeeeeecc--cc-------cCeEEEEEcCCCC
Q 001258 864 FLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 915 (1113)
Q Consensus 864 ~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 915 (1113)
.++++| +..++++++.++ .|.-+|..+|+.+..++. |. .++....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 667888887766 399999999998877653 32 2233233334665
Q ss_pred ---EEEEEeCCCcEEEEeCCCCccccccccc-------c--CCCC--------CC-----------CCCCCceEEEccCC
Q 001258 916 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQ-------I--PTGR--------TP-----------TAQSDTRVQFHQDQ 964 (1113)
Q Consensus 916 ---~L~s~s~D~~v~iwd~~~~~~~~~~~~~-------~--~~~~--------~~-----------~~~~i~~~~~spdg 964 (1113)
.++.++.+|.++++|..+++........ . ..+. .. ....-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 6889999999999999998764211000 0 0000 00 00001237888887
Q ss_pred cEEEEE-------------------------------------cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC
Q 001258 965 IHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus 965 ~~l~~~-------------------------------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
..+++. .++.|..||+.+++.+..... ..++....+...+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 766641 126799999999998766543 2233444455678
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 1008 QLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 1008 ~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
.++++++.||.+++||..+++.+.++..
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEECCcccchhhhhhcChhheEecC
Confidence 8999999999999999999999988873
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.70 E-value=1.1e-05 Score=85.18 Aligned_cols=202 Identities=10% Similarity=-0.021 Sum_probs=132.7
Q ss_pred CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
.+..+++++++..|..+. ++.|.++++.+......+.........++++++++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999888777776 689999999866544334333356889999984455555555678999999874332222
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d 972 (1113)
..........++++|++..|..+.. .+.|..++++..... .+.. .. ......+++++++..|+++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~-~~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQ-DN----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEEC-TT----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEE-CC----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222246789999997666655554 367888888653211 1110 11 1245789999988777664 56
Q ss_pred CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecC
Q 001258 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+.|.+++..+........ . ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998654433322 1 2334566654 45555554 56899999999999988875
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=1.6e-05 Score=93.17 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=104.8
Q ss_pred EEEEecCCCcEEEEEecC----------------CcEEEEEcccceeeeeecc--cc--------cCeEEEEEc-CCC--
Q 001258 864 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HS--------KRITGLAFS-HAL-- 914 (1113)
Q Consensus 864 ~l~~s~~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~d~-- 914 (1113)
..++.+ ...++..+..+ +.|.-+|..+|+.+-.++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456677 55566666655 3799999999998866653 21 1222 2222 467
Q ss_pred -CEEEEEeCCCcEEEEeCCCCcccccccccc----------CCCCC---------------------CCCCCCceEEEcc
Q 001258 915 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ 962 (1113)
Q Consensus 915 -~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~~~~sp 962 (1113)
..++.++.+|.++++|..+++......... ..+.. .....-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999987643221110 00000 0000113567777
Q ss_pred CCcEEEEE----------------------------------------cCCeEEEEeCCccceeeccccCCCCCCeeEEE
Q 001258 963 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1113)
Q Consensus 963 dg~~l~~~----------------------------------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1113)
+..++++. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2357888999999887665421 1222112
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+...+.+++.++.||.++.||.++|+.+.++.
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23367788889999999999999999998886
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=3.4e-06 Score=101.55 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=55.3
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCC-E
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V 916 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~ 916 (1113)
|.|..||+.+++.+....... ......+.. .+.++++|+.||.|+.||..+++.+..+....+.. .-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 789999999999877665332 233334444 56788889999999999999999998886543221 2234445666 4
Q ss_pred EEEEe
Q 001258 917 LVSSG 921 (1113)
Q Consensus 917 L~s~s 921 (1113)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=1.6e-06 Score=89.31 Aligned_cols=216 Identities=11% Similarity=0.019 Sum_probs=144.3
Q ss_pred ceeeeecCCCC--CeeEEEEecCCCcEEEEEec--CCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEE-EEEeCC
Q 001258 850 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL-VSSGAD 923 (1113)
Q Consensus 850 ~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L-~s~s~D 923 (1113)
+.+.++. |.. ....++|++ ++.+.++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..| ++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3445554 333 357999998 6665555443 5799999999999988765221 222355554 4444 445568
Q ss_pred CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---Cee
Q 001258 924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT 999 (1113)
Q Consensus 924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~ 999 (1113)
+.+.++|..+.+..... ..+ .+ ....+++||+.++++ .++.|.++|.++.+.+..+....+.. .+.
T Consensus 86 ~~v~viD~~t~~v~~~i----~~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNF----THQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEEE----ECC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEEE----ECC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 89999999986554321 111 11 234577788887775 56789999999999888876543222 356
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccC----CCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258 1000 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1000 ~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~----~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
.+.|. +|+..+....++.|.+.|..+++.+.++......+ .++.....+..++|.|+...+++++...+.|++-+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 78888 77555555567899999999999999887532110 11222233456999995555678888889999999
Q ss_pred ccCCC
Q 001258 1076 PLESE 1080 (1113)
Q Consensus 1076 ~~~~~ 1080 (1113)
+...+
T Consensus 235 l~~~~ 239 (266)
T 2iwa_A 235 LHLVR 239 (266)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 87654
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=2.3e-05 Score=92.18 Aligned_cols=197 Identities=9% Similarity=-0.093 Sum_probs=119.6
Q ss_pred EEEEecCCCEEEEEe-C----------------CeEEEEECCCCceeeeecCC--C-------CCeeEEEEecCCC---c
Q 001258 823 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 873 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~i~~l~~s~~d~---~ 873 (1113)
.++++++...+..+. + +.|..+|..+++.+..++.. . ....-+.... +| +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456777666666654 2 25999999999988776432 1 1111222334 56 4
Q ss_pred EEEEEecCCcEEEEEcccceeeeeecccc-------------cCe--------------------------EEEEEcCCC
Q 001258 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 914 (1113)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~ 914 (1113)
+++.++.+|.++++|..+|+.+....-.. .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876553211 011 235778888
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCC
Q 001258 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994 (1113)
Q Consensus 915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h 994 (1113)
.+++..+.+....++.....- ..+. ...+....+..+|.+. ....++.|..||..+++.+..+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 888888777666655543210 0010 0000001122233221 0013467889999999887665432
Q ss_pred CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
..+....+...+..++.++.||.|++||..+|+.+.++..
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 2233333344566788899999999999999999988863
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=6.4e-06 Score=84.78 Aligned_cols=220 Identities=8% Similarity=-0.048 Sum_probs=132.7
Q ss_pred CcceeEeccCCCC--cEEEEEcCCCCeEEEEEec--CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258 348 PKTVTRTLNQGSS--PMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1113)
Q Consensus 348 ~~~~~~~~~h~~~--V~~~~~spdg~~ll~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 423 (1113)
..++..++.|... ...++|+|||. |.++.+. ++.|.+.|..+++.+....+ ..+ ...
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------~~~-~fg 68 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM-----------------DDS-YFG 68 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------CTT-CCE
T ss_pred CceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec-----------------CCC-cce
Confidence 3456777788754 57999999975 5555443 57999999999998874221 111 122
Q ss_pred EEEEEcCCCCeEE-EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258 424 NRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1113)
Q Consensus 424 ~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 502 (1113)
..+++. |+.|. +.-.++.+.++|..+.+.+.. +..-... ...+++||+. ++++ ..++.|.++|..+.+.+
T Consensus 69 eGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~~--g~glt~Dg~~-l~vs-~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 69 EGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMKD--GWGLATDGKI-LYGS-DGTSILYEIDPHTFKLI 139 (266)
T ss_dssp EEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSSS--CCEEEECSSS-EEEE-CSSSEEEEECTTTCCEE
T ss_pred EEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCCC--eEEEEECCCE-EEEE-CCCCeEEEEECCCCcEE
Confidence 345554 44554 445678999999999887764 3211111 2345568885 3344 45889999999999888
Q ss_pred eEeeccC-----cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258 503 YIFEGHE-----APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1113)
Q Consensus 503 ~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 577 (1113)
..+.-.. ...+.+.|. ++...+....++.|.+.|..+++....+...+..-..+ ..+. ......
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~---~~~~-----~~~~v~ 208 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI---DEGF-----RDIDVL 208 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH---HTTC-----TTCCCE
T ss_pred EEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc---cccc-----cccCce
Confidence 8775321 235667754 45555666568899999999877766554321000000 0000 000122
Q ss_pred eEEEecCCCCE-EEEEecCCcEEEEECCCC
Q 001258 578 GVVQFDTTKNR-FLAAGDDFSIKFWDMDSV 606 (1113)
Q Consensus 578 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~ 606 (1113)
..++++|+++. ++++...+.|.+.++...
T Consensus 209 nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 33444444433 455557788888877543
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=3.5e-06 Score=85.34 Aligned_cols=198 Identities=10% Similarity=0.110 Sum_probs=129.9
Q ss_pred eeeeecCCCCC--eeEEEEecCCCcEEEEEecCC--cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCc
Q 001258 851 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQ 925 (1113)
Q Consensus 851 ~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~ 925 (1113)
.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. ........+++..|.... .++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 345553 5444 4788998 467777777776 99999999999988876432 333332333455555444 5889
Q ss_pred EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCC---eeEE
Q 001258 926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHA 1001 (1113)
Q Consensus 926 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~---v~~l 1001 (1113)
+.+||.++.+....... + -....+++|++.|+.+ ..+.|.++|..+.+.+..+.......+ +..+
T Consensus 109 v~v~D~~t~~~~~ti~~----~-------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNY----D-------GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEEETTTCCEEEEEEC----S-------SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEEECccCcEEEEEEC----C-------CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 99999998665432221 1 1234455788887775 467899999999998888765333333 4457
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC---c-ccCccceEEEEeCCCCCEEEEE
Q 001258 1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG---V-SSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus 1002 ~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g---h-~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
.|. +|+..+..-.+..|.+.|..+++.+..+......+.. + ...+ +.-++|+|....++++|
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v-lNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV-LNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC-EEEEEEETTTTEEEEEE
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc-eEEEEEcCCCCEEEEEC
Confidence 776 7765555556889999999999999998865333211 1 1222 23699999554455555
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=4.6e-05 Score=89.55 Aligned_cols=82 Identities=10% Similarity=0.057 Sum_probs=52.5
Q ss_pred CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 960 (1113)
+|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++...... ...+. ....+.+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~~ 514 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMTY 514 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEEE
Confidence 578999999999988776532 223333333346678889999999999999987653221 11111 1133456
Q ss_pred ccCCcEEEEE
Q 001258 961 HQDQIHFLVV 970 (1113)
Q Consensus 961 spdg~~l~~~ 970 (1113)
..+|+.++..
T Consensus 515 ~~~G~~yv~~ 524 (571)
T 2ad6_A 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 6788866653
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=4.8e-06 Score=84.36 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=124.0
Q ss_pred ccEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 821 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
...+.|+ ++.+..+++ +| .|+++|+++++.+..+.... ........++++++.+..-.++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4778898 665555555 55 89999999999988876433 3333333332445555556789999999999999988
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~ 976 (1113)
+..-. .=..++ +|++.|+.+..+++|.++|..+.+......... .+... ..+..+.|. +|+..+.. .+..|.
T Consensus 123 i~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence 87532 223344 577777776667889999998866543322211 11110 123346665 77655555 678999
Q ss_pred EEeCCccceeeccccCC--------C--CCCeeEEEECCCCCEEEEEeC
Q 001258 977 IFETTKLECVKQWVPRE--------S--SAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~~--------h--~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
+.|.++++.+..+...+ + ..-.+.|||+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999987776421 0 235688999999888877763
No 259
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.52 E-value=0.0088 Score=75.68 Aligned_cols=215 Identities=11% Similarity=0.110 Sum_probs=118.5
Q ss_pred ecCeecCCCCcccccc-ccCCCCCCCCccEEEEe---c-CCCEEEEEe-----------CCeEEEEECCCCceeeee-cC
Q 001258 795 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS---K-NDSYVMSAS-----------GGKISLFNMMTFKTMATF-MP 857 (1113)
Q Consensus 795 ~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s---~-~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~ 857 (1113)
..+++.|+.+...+.. .+. ..+.+.+++.- . ...++++|. .|.|.+|++..++..... ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 3456777766654322 122 34455555532 2 246888774 156999998754322111 12
Q ss_pred CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001258 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937 (1113)
Q Consensus 858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~ 937 (1113)
..+.+++++-- +|++|| |- ...|++|++...+.+..-..+-..|..+.....+++++.|+.-..|.+...+..+.
T Consensus 884 v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~- 958 (1158)
T 3ei3_A 884 VKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG- 958 (1158)
T ss_dssp ESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-
T ss_pred cCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-
Confidence 35678887754 455544 33 47899999986654431111222233333333578899998877787766543221
Q ss_pred cccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc-------c---eeeccccCCCCCCeeEEE---EC
Q 001258 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------E---CVKQWVPRESSAPITHAT---FS 1004 (1113)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~-------~---~~~~~~~~~h~~~v~~l~---~s 1004 (1113)
..........+ ..++++.|-.++.++++-.++.+.++..... + ....|.. ...|+++. +.
T Consensus 959 --~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl---G~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A 959 --NFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL---GEFVNVFCHGSLV 1031 (1158)
T ss_dssp --EEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC---SSCEEEEEECCSC
T ss_pred --eEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC---CCcEeeEEeeeee
Confidence 11112122211 4677888877776655557888888865431 1 1122221 45677765 33
Q ss_pred CC---------CCEEEEEeCCCcEEEEec
Q 001258 1005 CD---------SQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 1005 ~d---------g~~l~s~~~Dg~v~vwd~ 1024 (1113)
+. ...++.++.+|.|.+.--
T Consensus 1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cCCCccccccccceEEEEecCCEEEEEEE
Confidence 32 234777888999887743
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=7e-05 Score=87.78 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=50.4
Q ss_pred CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCCEE
Q 001258 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVL 917 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~L 917 (1113)
|.|..||+.+++.+....... +...-.+.- .+.++++++.||.++.||..+|+.+.+++.....+ .-+.+..+|+..
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 678889999988876654221 111111222 45677779999999999999999998876443222 224555677643
Q ss_pred E
Q 001258 918 V 918 (1113)
Q Consensus 918 ~ 918 (1113)
+
T Consensus 531 v 531 (599)
T 1w6s_A 531 V 531 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=5.1e-06 Score=84.03 Aligned_cols=182 Identities=9% Similarity=0.076 Sum_probs=122.8
Q ss_pred ccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1113)
...+.|+. +.+..+.+ +|.|+++|+++++.++.+ . ...... +++. ++++.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 46788863 33334444 689999999999998887 2 233333 4443 456666666789999999999999998
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1113)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~ 976 (1113)
+..- ..-..++ +|++.|+.+..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. ....|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~--v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQP--VELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-Ccc--cccccccEEe-CCEEEEEECCCCeEE
Confidence 8753 2224454 5788888877789999999988765433222111 100 0123456666 77655555 677999
Q ss_pred EEeCCccceeeccccC---------C--CCCCeeEEEECCCCCEEEEEe
Q 001258 977 IFETTKLECVKQWVPR---------E--SSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 977 v~d~~~~~~~~~~~~~---------~--h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
+.|.++++.+..+... . -..-.+.|||+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999988776542 1 123568899999877766655
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=2.9e-06 Score=85.82 Aligned_cols=197 Identities=14% Similarity=0.075 Sum_probs=131.8
Q ss_pred eeeeecCCCCC--eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE--EEEEcCCCCEEEEEeCCCcE
Q 001258 851 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT--GLAFSHALNVLVSSGADSQL 926 (1113)
Q Consensus 851 ~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~--~l~~s~d~~~L~s~s~D~~v 926 (1113)
.+.++. |... ...+.|+ ++.+..+.+.+|.|+++|+.+++.+..+ - ..... .+++.. ++..+..-.++.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 344553 4433 4788887 4678888888999999999999988877 2 22333 355543 3444455578899
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---CeeEEE
Q 001258 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT 1002 (1113)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~~l~ 1002 (1113)
.+||.++.+....... .. ....+++|++.|+++ ..+.|.++|..+.+.+..+....+.. .++.+.
T Consensus 119 ~V~D~~Tl~~~~ti~~----~~-------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY----SG-------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEETTTTEEEEEEEC----SS-------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEECCcCcEEEEEeC----CC-------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999998665432221 10 123444778888886 47899999999999988877544333 345677
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCC----Cc-ccCccceEEEEeCCCCCEEEEEe
Q 001258 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GV-SSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~----gh-~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
|. +|+..+....+..|.+.|..+++.+..+......+. .+ ...| ...+++.|...+++++|-
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v-lNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV-LNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC-EEEEEECTTTCCEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc-eEEEEEcCCCCEEEEeCC
Confidence 76 776555554688999999999999998886422110 11 1223 236999996666777763
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.47 E-value=2.7e-05 Score=91.51 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCCE
Q 001258 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNV 916 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~ 916 (1113)
+|.|..||+.+++.+........ +..-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.+..+|+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 47899999999988766543222 22212222 35578889999999999999999998887544322 22566667764
Q ss_pred EEE
Q 001258 917 LVS 919 (1113)
Q Consensus 917 L~s 919 (1113)
.++
T Consensus 543 Yv~ 545 (582)
T 1flg_A 543 YLG 545 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 264
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.44 E-value=0.00015 Score=76.32 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=136.2
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
..+.+++|++++.+|+++-...+.|..++..++.... +..........+++++++..|..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 4578999999888777777778899999987654321 111122467899999976666555
Q ss_pred -eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCceeeEee-ccCcCEEE
Q 001258 439 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS 514 (1113)
Q Consensus 439 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~ 514 (1113)
...+.|.++++..... .. ...........++++|++..+ +++... .+.|..+++. +.....+. ........
T Consensus 97 d~~~~~I~~~~~~g~~~-~~--~~~~~~~~P~~i~vd~~~g~l-yv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQR-RV--LFDTGLVNPRGIVTDPVRGNL-YWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG 171 (267)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEETTTTEE-EEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred ECCCCEEEEEEcCCCCE-EE--EEECCCCCccEEEEeeCCCEE-EEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence 4567899999875432 21 112222467899999977753 333332 4688888865 33333332 23345677
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-e
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-G 593 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 593 (1113)
+++++.. +.+.++....+.|..+|........... .... ...++.. +..++.+ .
T Consensus 172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~---------------------P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQY---------------------PFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEE-CCCS---------------------EEEEEEE--TTEEEEEET
T ss_pred EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEec-CCCC---------------------ceEEEEe--CCEEEEEEC
Confidence 8876532 2455666667889999886422111111 0111 1122332 2344444 4
Q ss_pred cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1113)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 631 (1113)
..+.|.++|..+++.+..+.... ......+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence 66899999999999888886432 12357788888764
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=5.4e-05 Score=82.39 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=145.5
Q ss_pred CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec--C------------------CCCCeeEEEEecCCCcEEEEE
Q 001258 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAIG 878 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~--~------------------~~~~i~~l~~s~~d~~~la~g 878 (1113)
...+++++++++++.++. ++.|..|+..+++.. .+. . ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 456789999998677776 789999998765432 221 0 0134788999963454 4445
Q ss_pred ecCCcEEEEEcccceeeeeec----c-cccCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCc
Q 001258 879 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 935 (1113)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~L~s~s~-----------------D~~v~iwd~~~~~ 935 (1113)
...+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888776542 2221 1 123578899999 9988776543 3668888876644
Q ss_pred cccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEE
Q 001258 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVY 1011 (1113)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1113)
... ..... .....++++|+|+.|+++ ..+.|.+|++.+... ...+.. ..+ ...++++++|.+.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 211 11111 134679999999877664 567899999875321 111111 123 78899999998766
Q ss_pred EEeC----------CCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1012 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1012 s~~~----------Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+... .+.|.++|.. ++.+..+.. +.+. ...+.. +++. +++++++....+.|..+++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~----~~g~~~~~~~~--~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL----PPPFAGEHFEQ--IQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC----CTTTTTSCCCE--EEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEEC----CCCCccccceE--EEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 4678888864 777766652 2121 122333 4442 56666666678899999876443
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=3.2e-05 Score=77.74 Aligned_cols=199 Identities=11% Similarity=0.115 Sum_probs=129.0
Q ss_pred eeeeecCCCC--CeeEEEEecCCCcEEEEEecCC--cEEEEEcccceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc
Q 001258 851 TMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ 925 (1113)
Q Consensus 851 ~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L~s~s~D~~ 925 (1113)
.+.++ .|.. -...+.|++ +.++.+.+.+| .|+++|+.+++.+..+.-.... --.+++. +++..+..-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 44555 3544 366899985 56667666654 8999999999998877543221 1234443 2334444557899
Q ss_pred EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---CeeEE
Q 001258 926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 1001 (1113)
Q Consensus 926 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~~l 1001 (1113)
+.+||.++.+....... +. ....+.+|+..|+++ .++.|.++|..+.+.+..+....+.. .++.+
T Consensus 87 v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 99999998665432221 11 234455778877775 56789999999999888877543333 34556
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC----c-ccCccceEEEEeCCCCCEEEEEe
Q 001258 1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG----V-SSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 1002 ~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g----h-~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
.+. +|+..+....+..|.+.|..+++.+..+......+.. + ...| ...+++.|..++++++|-
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v-lNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV-LNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC-EEEEEEETTTTEEEEEET
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc-eEEEEEcCCCCEEEEECC
Confidence 655 6765555546789999999999999998865443322 1 1223 236999996555566653
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00026 Score=76.19 Aligned_cols=244 Identities=13% Similarity=0.060 Sum_probs=142.1
Q ss_pred CCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258 347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1113)
Q Consensus 347 ~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 426 (1113)
.+.++...+........++|+++|+ |+++-..++.|..||...+. .. .+. -......+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCceeE
Confidence 3455566665557889999999998 67776678999999987532 21 111 12368899
Q ss_pred EEcCCCCeEEEEeCC-C-eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-ee
Q 001258 427 IWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY 503 (1113)
Q Consensus 427 ~~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~ 503 (1113)
+++++|+++++.... + .|..+|..+++.. .+..+ ........++..+++. .+++...++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999976665433 2 4666777777643 22222 1222334555555554 456666688899999765431 21
Q ss_pred Eee---------ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258 504 IFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1113)
Q Consensus 504 ~~~---------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 574 (1113)
... +.-.....+ +++. +.+.++-...+.|..+++....... ...+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~------------- 211 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ------------- 211 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence 111 111223444 3332 2355555667889999887421110 000000 00
Q ss_pred CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC---CCCCEEEEEECC
Q 001258 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 639 (1113)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 639 (1113)
.....++++++|+.+++....+.|.+++.. ++...............+++|. |+++.|++++..
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 122336677777766666678899999975 6553322222223457899998 888877777654
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=4.2e-05 Score=76.81 Aligned_cols=186 Identities=9% Similarity=0.089 Sum_probs=123.0
Q ss_pred CCccEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258 819 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1113)
.....+.|+. +.+..+.+ + +.|+++|+.+++.++.+...... -..+++. ++++....-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3456888986 44444444 3 48999999999998887643321 1334443 456666667889999999999999
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC
Q 001258 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1113)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~ 973 (1113)
+.++..-. .=.+|+ +|+..|+.+..++.|.++|..+.+......... .+.. ...+..+.+. +|+..+.. ...
T Consensus 98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence 99887533 224554 567777766778899999998866543222211 1100 0123344544 66655555 677
Q ss_pred eEEEEeCCccceeeccccCC-----------CCCCeeEEEECCCCCEEEEEe
Q 001258 974 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
.|.+.|.++++.+..+...+ -..-.+.|+++|+++.|+..+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999887765321 123568899999888777666
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.35 E-value=0.0002 Score=84.16 Aligned_cols=248 Identities=10% Similarity=0.006 Sum_probs=146.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeeecCCCC----Cee-EEEEecC--CCc-EEEEEec------CCcEEEEEccccee
Q 001258 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPP----AAT-FLAFHPQ--DNN-IIAIGMD------DSSIQIYNVRVDEV 894 (1113)
Q Consensus 830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~----~i~-~l~~s~~--d~~-~la~g~~------dg~v~iwd~~~~~~ 894 (1113)
+..+++++ ++.|.-+|..+++.+........ .+. ...+..+ +++ .+++++. +|.|+-+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 34555565 89999999999998866543321 111 1122221 233 5666553 78999999999987
Q ss_pred eeeecccccC-----------------------------------------eEEEEEcCCCCEEEEEeC-----------
Q 001258 895 KSKLKGHSKR-----------------------------------------ITGLAFSHALNVLVSSGA----------- 922 (1113)
Q Consensus 895 ~~~l~~h~~~-----------------------------------------V~~l~~s~d~~~L~s~s~----------- 922 (1113)
+-........ -..+++.++..++..+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 7654321000 013456666667766553
Q ss_pred ---------C----CcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEc-cCCc---EEEE-EcCCeEEEEeCCcc
Q 001258 923 ---------D----SQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFH-QDQI---HFLV-VHETQLAIFETTKL 983 (1113)
Q Consensus 923 ---------D----~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s-pdg~---~l~~-~~d~~v~v~d~~~~ 983 (1113)
| +.|..+|..+++..-......... .........-+... .+|+ .++. +.++.+.++|..+|
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 579999999987653211111100 00000011112222 4674 4555 48899999999999
Q ss_pred ceeeccccCCC-----------CC--------------------------------CeeEEEECCCCCEEEEEe------
Q 001258 984 ECVKQWVPRES-----------SA--------------------------------PITHATFSCDSQLVYACF------ 1014 (1113)
Q Consensus 984 ~~~~~~~~~~h-----------~~--------------------------------~v~~l~~s~dg~~l~s~~------ 1014 (1113)
+.+..+..... .. ....++++|+..++++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 98765443210 00 012457787766665543
Q ss_pred ---------------------------CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 1015 ---------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 1015 ---------------------------~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
.+|.|..||+.+++.+-+...... ...+ + +.. .+.+++.++.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g---~--~~t---agglvf~g~~ 505 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAG---V--LAT---AGNLVFTGTG 505 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSC---C--EEE---TTTEEEEECT
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---Cccc---c--eEe---CCCEEEEECC
Confidence 258899999999999877642111 1111 1 221 3568888999
Q ss_pred CCcEEEEeccCCCccccCCCC
Q 001258 1068 DGGVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus 1068 Dg~v~vW~~~~~~~~~~~~~~ 1088 (1113)
||.|+.||.++|+..|+..-+
T Consensus 506 dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 506 DGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp TSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEECCCCCEEEEecCC
Confidence 999999999999988776543
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00014 Score=79.07 Aligned_cols=254 Identities=10% Similarity=0.055 Sum_probs=140.3
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcc---ccc---ccccCCCcceEEEEEcC-C
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQA---ALVKDPGVSVNRVIWSP-D 431 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~h~~~V~~l~~sp-d 431 (1113)
....+++|+++|+ ++.++..++.|..||..+++... +........ ... .........+..+++.+ +
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 4567889999998 47778889999999987654321 100000000 000 00000113578999998 5
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeee-eec-ccCCeeEEEEcC-CCCeeEEEEecC-----------------CCcE
Q 001258 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI 491 (1113)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-~~~~~~l~s~s~-----------------d~~i 491 (1113)
|+ |.++...+.|..+|..++.. ..+.. ..+ .......+++.+ +|. +.++... ++.|
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence 65 44454445588888776532 21111 111 123578899999 887 4444322 3678
Q ss_pred EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 568 (1113)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 568 (1113)
..||..+++......+ ......++++ +++..|+ +-+..+.|..|++..... ...+..... ..
T Consensus 168 ~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~----------- 232 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG----------- 232 (322)
T ss_dssp EEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE-----------
T ss_pred EEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC-----------
Confidence 8899777764332222 2233456654 4555454 446678899998874211 111110011 23
Q ss_pred EeccccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEE
Q 001258 569 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~ 636 (1113)
.++++++|+..++... .+.|..+|. .++.+..+....+ ...+.++++ .+++++++.
T Consensus 233 ----------gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 233 ----------NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ----------EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ----------CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence 3455555555555433 466888886 4677766654432 234666766 466666666
Q ss_pred ECCCcEEEEEcCCC
Q 001258 637 TNDNGIKILATSDG 650 (1113)
Q Consensus 637 ~~dg~i~iwd~~~~ 650 (1113)
...+.|..+++...
T Consensus 301 ~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 301 LFHGSVGILVYDKK 314 (322)
T ss_dssp SSCSEEEEEEC---
T ss_pred cCCCceEEEecccc
Confidence 67788888887543
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.0002 Score=77.10 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=135.3
Q ss_pred CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC-C-cEEEEEcccceee
Q 001258 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-S-SIQIYNVRVDEVK 895 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-~v~iwd~~~~~~~ 895 (1113)
.....++++++++++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899999998666654 789999998753 333332 234688999999 77766654432 2 4777777777653
Q ss_pred eeec-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc---cccc--cCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 896 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN---RFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 896 ~~l~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~---~~~~--~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
.... ........++..+++..+++-..++.|.++|..++..... .... ...+.. .....+ ++|+++|++
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 2221 1222345566666665566555688888888765321100 0000 000110 122334 899987777
Q ss_pred E--cCCeEEEEeCCc-cce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceee--ecCCCcccCCC
Q 001258 970 V--HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSAYLPAG 1042 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~--~~~~~~~~~~g 1042 (1113)
+ ..+.|..|++.. ++. ...+.. ......++++++|++.++....+.|.+++.. ++... .+. .
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-------~ 252 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-------Q 252 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-------G
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-------c
Confidence 4 567899999875 322 111111 1346779999999887776667899999975 55532 222 0
Q ss_pred cccCccceEEEEe---CCCCCEEEEEeCCC
Q 001258 1043 VSSNVHPLVIAAH---PQEPNEFALGLSDG 1069 (1113)
Q Consensus 1043 h~~~v~~i~~~~~---p~d~~~l~s~~~Dg 1069 (1113)
.--.+.+++|. | |++.|..++..+
T Consensus 253 --~~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 --GVIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp --TCTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred --ccCCceEEEEecccC-CCCEEEEECCCC
Confidence 11234468887 5 556665555433
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.30 E-value=7.9e-05 Score=91.18 Aligned_cols=159 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred CcEEEEEc-CCCCeEEEEEecCC----cEEEEecCCc-ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258 360 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1113)
Q Consensus 360 ~V~~~~~s-pdg~~ll~~gs~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1113)
.+...+|| |||++++++-+.+| +|+++|+.+| +.+.. .+. .....++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 67889999 99997555554444 4999999988 63211 011 1234689999999
Q ss_pred eEEEEeCC-----CeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCc-ee--e
Q 001258 434 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 503 (1113)
Q Consensus 434 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~-~~--~ 503 (1113)
.|+....| ..|.++++.++..... ..+. .+......+.|+|||+++++.+.+ ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98887765 3688888887642211 1222 223456788999999964333322 24468888988763 22 3
Q ss_pred Ee-eccCcCEEEEeeeecCCceEEEEEecC--C--cEEEEEcCC
Q 001258 504 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN 542 (1113)
Q Consensus 504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~ 542 (1113)
.+ .+......++.|+ .++.+++....+ + .|..+++.+
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 3334444554432 222444444443 3 455566553
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=8.5e-05 Score=90.92 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=111.5
Q ss_pred CccEEEEe-cCCCEEEEEe--CC----eEEEEECCCC-ceeee-ecCCCCCeeEEEEecCCCcEEEEEecC-----CcEE
Q 001258 820 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 885 (1113)
Q Consensus 820 ~v~~l~~s-~~~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~ 885 (1113)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 56789999 9999999775 22 4999999988 63211 11 1135689999 77777766654 3688
Q ss_pred EEEcccceee--eeec-ccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258 886 IYNVRVDEVK--SKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1113)
Q Consensus 886 iwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 959 (1113)
++++.++... ..+. .+.....++.|||||++|+..+. ...|+++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 8888775421 2222 22344678899999999887653 3468888887752111 0011111111 1233444
Q ss_pred EccCCcEEEE-EcC-----CeEEEEeCCccceeec-cccCCCCCCeeEEEECCCCCEEEEEeCCCc--EEEEec
Q 001258 960 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1024 (1113)
Q Consensus 960 ~spdg~~l~~-~~d-----~~v~v~d~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~--v~vwd~ 1024 (1113)
|+. |..|+. +.. ..|..+++.++..... +........+..+.+. .+.++++...|+. |.++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 433 555544 432 2677777765322222 2211112245566665 3445666777776 455564
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00057 Score=69.83 Aligned_cols=202 Identities=9% Similarity=0.064 Sum_probs=126.0
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
-.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+. .....|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g~-~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDFV-KDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSSC-SSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCCC-CChHHeEEeCCCEEEE
Confidence 346899999999988778778888999999988 77665422 2222 4578889999998777
Q ss_pred EEeCCCeEEEEEccCCceee--eeeee----ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCceeeEee-
Q 001258 437 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE- 506 (1113)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~- 506 (1113)
+.-.++.+.++++.....+. ....+ .........|+|+|+++.+ .++.......||.+. .+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L--~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF--WFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE--EEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE--EEEECcCCceEEEEcccccCCceeeecc
Confidence 76667889999887654322 11111 1234567899999999853 333333333444433 112222221
Q ss_pred ------ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------CceEEEEEccCCCeEEec
Q 001258 507 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 507 ------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~~~ 571 (1113)
.+...+.++++++.. +.+++....++.+..+|... .....+.... .....+
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGi------------ 229 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGV------------ 229 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEE------------
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCee------------
Confidence 123456788888754 57777777888898888763 3333332221 133444
Q ss_pred cccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1113)
+++++|+ |+..++.+.++++..
T Consensus 230 ---------a~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 230 ---------AMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp ---------EECTTCC-EEEEETTTEEEEEEC
T ss_pred ---------EECCCCC-EEEEcCCceEEEEEe
Confidence 4455544 666687777777754
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00041 Score=70.89 Aligned_cols=217 Identities=10% Similarity=0.095 Sum_probs=131.9
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1113)
Q Consensus 854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~ 932 (1113)
.+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455556799999999666777778889999999988 887777632 12457889999998877776677889999887
Q ss_pred CCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc---cceeecc-----ccCCCCCCeeEEE
Q 001258 933 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHAT 1002 (1113)
Q Consensus 933 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~---~~~~~~~-----~~~~h~~~v~~l~ 1002 (1113)
...... ...................++|+|++..|.++ ......+|.+.. ...+... ....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 644211 11111111112223457899999999777774 333344544431 1111111 1112345678999
Q ss_pred ECCCCCE-EEEEeCCCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258 1003 FSCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus 1003 ~s~dg~~-l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
+.|.... ++.......+.++|.. ++.+..+.+..... +- ..-..+--++|.+ +|++.++ ++-+-++++.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence 9996655 4445556778889966 55666665332110 10 0112333588888 6775555 6666555554
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.0013 Score=70.96 Aligned_cols=206 Identities=6% Similarity=-0.032 Sum_probs=129.7
Q ss_pred CCCccEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
...+.+++|++.+..|..+. ++.|..+++.+ ......+.........+++++.++++.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899999887777776 68999999876 2222223323345688999874566666666788999999875
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
......+........++++.|.+..|..+... +.|...+++...... ... ... .....+++++++..|+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~-~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-ENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEE-CCC-----CCceEEEEeccCCEEEE
Confidence 43332333334567899999877766655543 678888876532111 111 111 24578999998877776
Q ss_pred E--cCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258 970 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+ ..+.|..+|+.... ...+.. .........+++. .+.++++-...+.|..++..+++.+..+
T Consensus 181 ~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 4 55789999987433 233221 1123456788884 3555555556788999998777665554
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.21 E-value=0.00096 Score=72.99 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=147.3
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345666555 456666666778888887655544443 344588999998456666665677899999988655433333
Q ss_pred ccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC-CeE
Q 001258 900 GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL 975 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d-~~v 975 (1113)
.......++++.+.+..| ++-...+.|.+.+++..... ... ..+ . .....++++|.+..|+.+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~l~--~~~-l---~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLL--WQS-L---EKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE--CTT-C---SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE--EEE--eCC-C---CCcceEEEecCcCeEEEeccCCCCEE
Confidence 333456789998755544 55556788999998764321 111 111 1 245789999976666654 33 678
Q ss_pred EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus 976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
..++.+..... .+.. ..-.....|+|+|++..|+.+. ..+.|..++++.......+. ..-.... .+++
T Consensus 185 ~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-------~~~~~P~--giav 253 (349)
T 3v64_C 185 EASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-------QGLPHPF--AITV 253 (349)
T ss_dssp EEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEE--EEEE
T ss_pred EEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-------CCCCCce--EEEE
Confidence 88887654332 2221 1244678999998777766655 45779999987543322222 1112223 3444
Q ss_pred eCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1055 HPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1055 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
. ++.++++-...+.|...+..+|+
T Consensus 254 ~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 F--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEecCCCCeEEEEEccCCC
Confidence 3 45566666677888888866666
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.17 E-value=0.0019 Score=70.55 Aligned_cols=205 Identities=11% Similarity=0.005 Sum_probs=132.4
Q ss_pred CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.++++.++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998877777776 68899999987654444433334567899997556666666667899999987543333
Q ss_pred eecccccCeEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258 897 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1113)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~L~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d 972 (1113)
.+...-....++++.|.+..|..+. .. +.|...+++...... .. ..+. .....++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~----~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHL----FWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC--CSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCC----CCcceEEEeCCCCEEEEEECCC
Confidence 3334445678999998666655554 34 678888877632211 11 1111 235789999987777764 56
Q ss_pred CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+.|..+++..... ..+.. ........+++ .++.+.++-...+.|..++..+|+....+.
T Consensus 225 ~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7899999875432 22221 22446678888 345555555567888888866666555443
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0035 Score=67.82 Aligned_cols=279 Identities=11% Similarity=0.063 Sum_probs=151.3
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~ 830 (1113)
...+.++.|.+++..++ ++..|.+... .+.+ +-|.... .........+.++.+++ +
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~ 90 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-N 90 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-T
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-C
Confidence 34688899987777666 5566654321 1100 0121110 00001244678889876 5
Q ss_pred CEEEEEeCCeEEEEECCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-ecccccCeE
Q 001258 831 SYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT 906 (1113)
Q Consensus 831 ~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~ 906 (1113)
..++++..+.|.. ..+.++.-.... .+...+..+.+.+ ++.+++++ .+|.|+. ....|+.-.. ..++...+.
T Consensus 91 ~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 91 EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMR 166 (327)
T ss_dssp EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEE
T ss_pred eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceE
Confidence 5566666775544 333343322222 2234577888876 66666655 4565432 1222322222 234556789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcccee
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV 986 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~ 986 (1113)
++++.+++.+++.+...+..+-+|-. +. ......... ...+..+++++++..++++.++.+.+.+.+.++.-
T Consensus 167 ~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp EEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECCS-----SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred EEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCCC-----CCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence 99999998888766544433333321 11 111111111 13567888999999888888888877653434433
Q ss_pred eccccC--CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258 987 KQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 987 ~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
...... .+...+.++.+.+++.+++++. +|.| .+..+.|+.-..+.. +..+...+.. +.|.+ +..++.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~----~~~~~~~~~~--v~~~~--~~~~~~ 308 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD----VKKVPSNFYK--ILFFS--PDQGFI 308 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG----GTTSSSCCCE--EEEEE--TTEEEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc----cCCCCCCeEE--EEEEC--CCceEE
Confidence 322211 1234688999998887766654 7777 445555654433321 0012234443 55554 346777
Q ss_pred EeCCCcEEEEe
Q 001258 1065 GLSDGGVHVFE 1075 (1113)
Q Consensus 1065 ~~~Dg~v~vW~ 1075 (1113)
++.+|.|.-++
T Consensus 309 ~G~~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQKGILLRYV 319 (327)
T ss_dssp ECSTTEEEEEC
T ss_pred EcCCceEEEEc
Confidence 78899876665
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.14 E-value=0.0012 Score=73.52 Aligned_cols=205 Identities=10% Similarity=-0.010 Sum_probs=133.3
Q ss_pred CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.++++.++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578899998777777765 68899999987654444443334567889997556666666667789888876543333
Q ss_pred eecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258 897 KLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1113)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d 972 (1113)
.+........+|++.|.+..|..+.. . +.|...+++...... .. ..+. .....++++|++..|+.+ ..
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~----~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHL----FWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE--CSSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCC----CCeeeEEEeCCCCEEEEEECCC
Confidence 33334466799999987776665543 3 678888876532211 11 1111 235789999887777764 56
Q ss_pred CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+.|..+++...... .+.. ........+++ ..+.++++-...+.|..++..+|+....+.
T Consensus 268 ~~I~~~d~dG~~~~-~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 268 HVIERANLDGSHRK-AVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEECTTSCSCE-EEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCeeE-EEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 78999998754332 2221 22446678888 445555565667889999877777666554
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.14 E-value=0.0013 Score=70.92 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=139.7
Q ss_pred EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeee-eecccccCeEE
Q 001258 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKS-KLKGHSKRITG 907 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~-~l~~h~~~V~~ 907 (1113)
+|+.+....|+..|+.+.+....+. .......++|++.++.++.+-..++.|+.+++.. +.... .+........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 5666667789999998876555444 3456889999984555666666678999999875 12222 23323345688
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC-CeEEEEeCCcc
Q 001258 908 LAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLAIFETTKL 983 (1113)
Q Consensus 908 l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d-~~v~v~d~~~~ 983 (1113)
+++.+.+. +.++-...+.|.+.+++..... .... ... .....++++|.+..|+.+ .. +.|..++.+..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~-----~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEE--EEEE-CTT-----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceE--EEEE-CCC-----CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 99986554 4455566788999998763221 1111 111 245789999976666553 22 67888887543
Q ss_pred ceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258 984 ECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
....+.. ..-.....+++++++..|+.+. ..+.|.++|++.... ..+.. .....-.+..++.. ++.++
T Consensus 154 -~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~------~~~~~~~P~giav~--~~~ly 222 (316)
T 1ijq_A 154 -DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE------DEKRLAHPFSLAVF--EDKVF 222 (316)
T ss_dssp -CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE------CTTTTSSEEEEEEE--TTEEE
T ss_pred -CeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEee------cCCccCCcEEEEEE--CCEEE
Confidence 3332221 1245678999999877776655 457899999975332 22210 00011123335543 35566
Q ss_pred EEEeCCCcEEEEeccCCC
Q 001258 1063 ALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1063 ~s~~~Dg~v~vW~~~~~~ 1080 (1113)
++-...+.|..++..+++
T Consensus 223 ~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EEECCCCeEEEEeCCCCc
Confidence 666677889999887776
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00021 Score=86.16 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=128.3
Q ss_pred CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEe-cC-----CcEEEEEc
Q 001258 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV 889 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~-~d-----g~v~iwd~ 889 (1113)
....++++..+++++++|+ ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 3344678889999999997 46899999887543322111111 224556666 788999998 44 47999999
Q ss_pred ccceeeee--e--cccccCeEEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCccccccccccCCC-C--CCCCC
Q 001258 890 RVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTG-R--TPTAQ 953 (1113)
Q Consensus 890 ~~~~~~~~--l--~~h~~~V~~l~~s~d~~~L~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~-~--~~~~~ 953 (1113)
.+.+-... . ......-....+..++..++.++.|+ .+..||..+..-.. ....... + .....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCC
Confidence 87542211 0 00000000012234555556665554 46778877643211 1111100 0 00001
Q ss_pred CCceEEEc-cCCcEEEEE-cCC-----------eEEEEeCCccceeeccccC-CCCCCeeEEEECCCCCEEEEEeCC---
Q 001258 954 SDTRVQFH-QDQIHFLVV-HET-----------QLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLD--- 1016 (1113)
Q Consensus 954 ~i~~~~~s-pdg~~l~~~-~d~-----------~v~v~d~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~D--- 1016 (1113)
.-..+.|. .+++.++++ .++ .+.+||..+.+........ .....-.+++..|+|++++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 12344444 367777774 321 6788888877654432001 112233456778899999999865
Q ss_pred --------CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258 1017 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus 1017 --------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
..+.+||..+.+... +.........|+ +....| ||++++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs------~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHS------ISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTE------EEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cCCCCCcccccc------HhhcCC-CcEEEecCCC
Confidence 468999998866442 211110011221 133345 7899999885
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.08 E-value=0.00082 Score=75.78 Aligned_cols=248 Identities=8% Similarity=0.018 Sum_probs=143.7
Q ss_pred CccEEEEecC--CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC---C-cEEEEEcccc
Q 001258 820 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 892 (1113)
Q Consensus 820 ~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~v~iwd~~~~ 892 (1113)
....++++|+ +..|.++. .+.|+.+|..++..... .........+++++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 45555554 58899999987665443 33455689999999 77754443311 1 2333332221
Q ss_pred ee-eeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 893 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 893 ~~-~~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.. ...+. .......+++++ +|.++++-..++.|+.++..++..... ...... . .....++|+|+|.+|+++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01121 234457789999 677666666778899999876543111 111111 1 123469999999966664
Q ss_pred --cCCeEEEEeCC--cccee--ecccc----CC---------CCCCeeEEEE---------CCCCCEEEEEeCCCcEEEE
Q 001258 971 --HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1022 (1113)
Q Consensus 971 --~d~~v~v~d~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~~~Dg~v~vw 1022 (1113)
..+.|..++.. ++... ..+.. .+ .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789987765 33211 11110 01 1234677999 7777777776677889999
Q ss_pred ecCCCceeeecCCCc----ccCCC-c--c-cCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1023 SAANLKLRCRINPSA----YLPAG-V--S-SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1023 d~~~~~~~~~~~~~~----~~~~g-h--~-~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
+. +|.......... -...| . . .--.|..+++.|.+|+++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 564443322110 00001 0 0 012355688886577777776667788887764
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.08 E-value=0.0026 Score=70.91 Aligned_cols=208 Identities=6% Similarity=-0.044 Sum_probs=133.3
Q ss_pred CCCccEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
...+.+++|++.+..|..+. .+.|+.+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999888887776 688999998752 222333334456788999974566666666778999999876
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
......+........+|++.|.+.+|..+.. .+.|...+++...... .. ..+. .....+++++++..|+.
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~--~~~l----~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENI----QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EE--CSSC----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EE--ECCC----CceEEEEEEeCCCEEEE
Confidence 5443334434456889999997666665553 3678888887633211 11 1110 24578999998887777
Q ss_pred E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
+ ..+.|..+|++...................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 5678999998754432222211223456677773 34445555566889999987777665554
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.07 E-value=0.011 Score=63.97 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=113.1
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcEEE-EEc--cccee
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV 894 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~i-wd~--~~~~~ 894 (1113)
..+..+++.++++.++++.++.|.. ..+.++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3466788877887777776665432 2222332222 233455788999999 788887665 454444 332 23333
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1113)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~ 974 (1113)
+. ......+..+++.++++.++ ++.+|.+++++.+.++. ....... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456788999999987665 45678777764332221 1111111 000012467888999998888888887
Q ss_pred EEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258 975 LAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus 975 v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
+ .+..+.|+.-..... ..+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 7 445555543332221 12245678899986655 556667898776653
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.00083 Score=75.77 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=141.1
Q ss_pred CccEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CC----cEEEEEcccc
Q 001258 820 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 892 (1113)
Q Consensus 820 ~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg----~v~iwd~~~~ 892 (1113)
....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|.++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 467899998 456666665 588999999876544333 3455688999999 7775555543 22 3444443 33
Q ss_pred eee--eeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 893 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 893 ~~~--~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
... ..+. ......+++++| ++.++++-..++.|..++.+++... ........ .....++|+|+|++|++
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2222 123467889999 6777777667888999998864321 11111111 23578999999996666
Q ss_pred E--cCCeEEEEeCCc--cce--eecccc----CCC---------CCCee-EEEEC--------CCCCEEEEEeCCCcEEE
Q 001258 970 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~dg~~l~s~~~Dg~v~v 1021 (1113)
+ ..+.|..++... +.. +..+.. .+. -.... .++.. ++|.+.++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567888887653 221 111110 000 11223 45553 34555555556678999
Q ss_pred EecCCCceeeecCCCcccCCCc-cc-------CccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1022 FSAANLKLRCRINPSAYLPAGV-SS-------NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1022 wd~~~~~~~~~~~~~~~~~~gh-~~-------~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
++ .+|..............|. .+ --.|..+++.|.++.++++-...+.|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443322100000010 00 12455688888556666666666788877754
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.06 E-value=0.0021 Score=71.65 Aligned_cols=230 Identities=10% Similarity=0.062 Sum_probs=143.5
Q ss_pred CEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc----eeeeeecccccCeE
Q 001258 831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 906 (1113)
Q Consensus 831 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 906 (1113)
.+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666778899999998765544443 45678999999855555555556788999988752 22233333445678
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc---CCeEEEEeCCc
Q 001258 907 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 982 (1113)
Q Consensus 907 ~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~---d~~v~v~d~~~ 982 (1113)
+|++.+. +++.++-...+.|.+.+++...... ... ... .....+++.|.+.+|+.+. .+.|...+++.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEE--EEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEE--EEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 9999874 4455555567889999987643211 111 111 2357899999766666542 46788888865
Q ss_pred cceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258 983 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
........ ..-.....|++++++..|+.+. ..+.|..+|++.......+. +....-.+..++.. .+.+
T Consensus 235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~l~~P~gl~v~--~~~l 303 (400)
T 3p5b_L 235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLAVF--EDKV 303 (400)
T ss_dssp CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-------CSSTTSSEEEEEEE--TTEE
T ss_pred CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-------CCCCCCCCEEEEEe--CCEE
Confidence 43322221 2235688999999888777665 45789999987644332221 11111223345543 3456
Q ss_pred EEEEeCCCcEEEEeccCCC
Q 001258 1062 FALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1062 l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+++-...+.|..++..+|+
T Consensus 304 ywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 304 FWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEESSSCSEEEEESSSCC
T ss_pred EEecCCCCeEEEEEcCCCC
Confidence 6676677889999977776
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.98 E-value=0.00034 Score=84.36 Aligned_cols=244 Identities=11% Similarity=0.022 Sum_probs=137.7
Q ss_pred cEEEEec-CCCEEEEEe-CC-----------eEEEEECCCCcee--eeec-CCCCCeeEEEEecCCCcEEEEEec-CCcE
Q 001258 822 PCFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFM-PPPPAATFLAFHPQDNNIIAIGMD-DSSI 884 (1113)
Q Consensus 822 ~~l~~s~-~~~~l~~~s-dg-----------~i~vwd~~~~~~~--~~~~-~~~~~i~~l~~s~~d~~~la~g~~-dg~v 884 (1113)
.++++.+ +++.++.|+ ++ .+.+||..+.+.. ..+. .+.....++++.. +++++++|+. +..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 3567777 888888876 21 5889998876532 2222 2333345677777 8899999984 4589
Q ss_pred EEEEcccceeeeeecccccCe-EEEEEcCCCCEEEEEe-CC-----CcEEEEeCCCCccccccc---cccCCCCCCCCCC
Q 001258 885 QIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQS 954 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~L~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~ 954 (1113)
.+||..+.+-...-..+..+. .+++..+++++++.|+ .+ ..+.+||..+.+-..... .......
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------ 341 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------ 341 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC------
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc------
Confidence 999988754322211122222 2455667999999998 44 568999998743211000 0011110
Q ss_pred CceEEEccCCcEEEE----------EcCCeEEEEeCCccceeeccccCC-------CCCCeeEEEEC-CCCCEEEEEeCC
Q 001258 955 DTRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLD 1016 (1113)
Q Consensus 955 i~~~~~spdg~~l~~----------~~d~~v~v~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~~~D 1016 (1113)
....+..+++.++. +....+..||..+........... ....-.++.|. .++++++.|+.+
T Consensus 342 -~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 342 -KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp -TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred -ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 00112233333333 234567889988776433221110 01122444453 478888888854
Q ss_pred C-----------cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-----------CcEEEE
Q 001258 1017 A-----------TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1074 (1113)
Q Consensus 1017 g-----------~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----------g~v~vW 1074 (1113)
+ .|.+||..+........ ...+ ...... ..+..| ++++++.|+.+ ..+.+|
T Consensus 421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~mp---~~R~~~-~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 421 DYQDSDATTNAHIITLGEPGTSPNTVFAS--NGLY---FARTFH-TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSSBCCCCEEEEECCSTTSCCEEEECT--TCCS---SCCBSC-EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCCcCCcceEEEcCCCCCCCeeEEcc--CCCC---CCcccC-CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 3 67888887765543220 0111 122221 234455 78899998865 568999
Q ss_pred eccCCC
Q 001258 1075 EPLESE 1080 (1113)
Q Consensus 1075 ~~~~~~ 1080 (1113)
|+.+.+
T Consensus 494 dp~t~~ 499 (656)
T 1k3i_A 494 VPEQDT 499 (656)
T ss_dssp EGGGTE
T ss_pred cCCCCc
Confidence 998765
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.97 E-value=0.0032 Score=69.86 Aligned_cols=215 Identities=10% Similarity=-0.036 Sum_probs=127.8
Q ss_pred EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1113)
Q Consensus 353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1113)
..+.....+..++|.+.+..|+.+-...+.|..++...+.... ++.........+++.+.+
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVH 170 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTT
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCC
Confidence 3444456789999998877777776677899999988654322 111112245678898865
Q ss_pred CeE-EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCceeeEeeccCc
Q 001258 433 SLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA 510 (1113)
Q Consensus 433 ~~l-as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~ 510 (1113)
..| ++-...+.|.+.++....... .+.........|++.|.+.. ++++-... +.|...++............-.
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 555 444556788888887543221 22333456789999998775 34444444 7888888654333222233344
Q ss_pred CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1113)
....+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+..++
T Consensus 247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~ 303 (386)
T 3v65_B 247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW 303 (386)
T ss_dssp CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence 56788887543 3455666667889888876433322222222233334331 122344
Q ss_pred EEecCCcEEEEECCCCceEEEEc
Q 001258 591 AAGDDFSIKFWDMDSVQLLTSID 613 (1113)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~ 613 (1113)
+-...+.|..++..+++.+..+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 44566778888866666655554
No 290
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.95 E-value=0.09 Score=64.41 Aligned_cols=494 Identities=12% Similarity=0.049 Sum_probs=245.0
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1113)
..|.++.. .+|. |-.|+.+ -+..+|..+++.... . . .. ..-....|.++....+|.+.+.
T Consensus 103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~------~------~-~~--~~l~~~~i~~i~~d~~g~lWig- 162 (758)
T 3ott_A 103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSF------D------T-RR--NGLPNNTIYSIIRTKDNQIYVG- 162 (758)
T ss_dssp SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEE------C------H-HH--HCCSCSCEEEEEECTTCCEEEE-
T ss_pred ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEe------c------c-CC--CCcCCCeEEEEEEcCCCCEEEE-
Confidence 35777755 4665 3445555 678888876543221 0 0 00 0112346889988888877664
Q ss_pred eCCCeEEEEEccCCceeeeeeeeecc----cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258 439 YSRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1113)
Q Consensus 439 ~~d~~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1113)
..+| |..++..+++... . ..... ...|.++...+++..+++.+ . +-+..+|..+++......-....|.+
T Consensus 163 t~~G-l~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~~~~~~~~l~~~~i~~ 236 (758)
T 3ott_A 163 TYNG-LCRYIPSNGKFEG-I-PLPVHSSQSNLFVNSLLEDTTRQCVWIGT--E-GYLFQYFPSTGQIKQTEAFHNNSIKS 236 (758)
T ss_dssp ETTE-EEEEETTTTEEEE-E-CCCCCTTCSSCCEEEEEEETTTTEEEEEE--E-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred eCCC-HhhCccCCCceEE-e-cCCCccccccceeEEEEEECCCCEEEEEE--C-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence 4444 7788877664321 1 11111 22488888887776433433 3 45888897766543221112345776
Q ss_pred EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1113)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1113)
+. .+.+|. |..|+.+ -+.+++..+..... +...... . .+.....+.++..+.++. |-.|+.
T Consensus 237 i~--~d~~g~-lWigT~~-Gl~~~~~~~~~~~~-~~~~~~~---------~----~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 237 LA--LDGNGD-LLAGTDN-GLYVYHNDTTPLQH-IIHDSRN---------I----QSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EE--ECTTCC-EEEEETT-EEEEECCTTSCCEE-ECCCTTC---------T----TSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EE--EcCCCC-EEEEeCC-ceeEEecCCCcEEE-EEcCCCC---------c----CcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 66 344544 4445544 47777765533221 1110000 0 000111233344444443 445555
Q ss_pred CCcEEEEECCCCceEEEEc-----cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc-ceeccccccccccccC
Q 001258 595 DFSIKFWDMDSVQLLTSID-----ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTS 668 (1113)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 668 (1113)
.| +.++... .. ...+. .......|.++.-..+|.+.+. +.+| +..++..++.. ....+
T Consensus 298 ~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~----------- 361 (758)
T 3ott_A 298 YG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWY----------- 361 (758)
T ss_dssp SS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEE-----------
T ss_pred Cc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEe-----------
Confidence 56 5444322 11 11111 0111235677777777776654 4444 55555433210 00000
Q ss_pred CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1113)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1113)
.... ... .
T Consensus 362 -------------------------------------------------------------~~~~-----~~~------~ 369 (758)
T 3ott_A 362 -------------------------------------------------------------RMGD-----KTY------P 369 (758)
T ss_dssp -------------------------------------------------------------CTTC-----SSS------C
T ss_pred -------------------------------------------------------------ccCC-----cCC------C
Confidence 0000 000 0
Q ss_pred cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1113)
Q Consensus 749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 828 (1113)
.....|.++....+|+..+. +. +-+..|+.....+.. +.... .........|.++...+
T Consensus 370 l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~~~------------~~~~~-------~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQFIH------------YNIVD-------NTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp CSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEEEE------------EEEEC-------CC--CBSSSEEEEEECT
T ss_pred CCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcEEE------------eecCC-------CcCCCCCceEEEEEEcC
Confidence 02345778888888875554 43 456667654322210 00000 00000234578888888
Q ss_pred CCCEEEEEeCCeEEEEECCCC-----cee---eeec---C-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258 829 NDSYVMSASGGKISLFNMMTF-----KTM---ATFM---P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1113)
Q Consensus 829 ~~~~l~~~sdg~i~vwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1113)
+|++.+...++.|.++|..+. ... ..+. + ....|.++...+ +|++.+.++..+-|..+|..+++...
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE
Confidence 887666444667888886531 111 1111 1 123488888887 67766533334568888988766443
Q ss_pred eecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258 897 KLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1113)
Q Consensus 897 ~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~ 973 (1113)
.... ....+.++....+|.+.+.. ..| +..++..+...... . ..+.. ...|.++... +|.. ..+.+.
T Consensus 508 ~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~~~-~g~l-Wi~t~~ 577 (758)
T 3ott_A 508 LFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMTCV-KNSI-WVSTTN 577 (758)
T ss_dssp ECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEE-EEEESS
T ss_pred ecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEEEC-CCCE-EEECCC
Confidence 2211 13467888888888777654 455 88888766432211 1 11111 1346666653 6654 444456
Q ss_pred eEEEEeCCccceeeccccCCCCCCeeEEEEC-CCCCEEEEEeCCCcEEE
Q 001258 974 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~v 1021 (1113)
.+..||..+.+...- .. ....+....+. ++|. |+.|+.+|.+++
T Consensus 578 Gl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl~~f 622 (758)
T 3ott_A 578 GLWIIDRKTMDARQQ-NM--TNKRFTSLLFDPKEDC-VYLGGADGFGIS 622 (758)
T ss_dssp CEEEEETTTCCEEEC-----CCCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred CeEEEcCCCceeEEe-cC--CCCceeeeEEECCCCc-EEEecCCceEEE
Confidence 688899887765432 11 12233444444 4554 555677885544
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.91 E-value=0.0073 Score=63.91 Aligned_cols=197 Identities=8% Similarity=0.152 Sum_probs=124.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecC---CCc---EEEEEec---CCcEEEEEcc--cceeee
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGMD---DSSIQIYNVR--VDEVKS 896 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~la~g~~---dg~v~iwd~~--~~~~~~ 896 (1113)
...+++... .+.+.+||+ +++.++.+.. +.++.+..-|. +++ ++++... +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444544444 688999999 7888888864 56777776661 122 2333333 5799999874 333 44
Q ss_pred eecc------cc-cCeEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCCCcc--ccccccccCCCCCCCCCCCceEEEccC
Q 001258 897 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 897 ~l~~------h~-~~V~~l~~--s~d-~~-~L~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
.+.. .. ..+..+|+ ++. ++ +++....+|.+..|++..... ...+....+.- .+.+..++..+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~ 190 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDE 190 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCC
Confidence 4311 11 56777888 764 44 678888899999999843211 11111111111 135788999998
Q ss_pred CcEEEEE-cCCeEEEEeCC-----ccceeeccccCCC-CCCeeEEEE--CCCCC-EEEEEe-CCCcEEEEecC-CCceee
Q 001258 964 QIHFLVV-HETQLAIFETT-----KLECVKQWVPRES-SAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1031 (1113)
Q Consensus 964 g~~l~~~-~d~~v~v~d~~-----~~~~~~~~~~~~h-~~~v~~l~~--s~dg~-~l~s~~-~Dg~v~vwd~~-~~~~~~ 1031 (1113)
..+|+++ .+..|..|+.+ +++.+..+.. +| ...+..|++ .++++ ||++.+ .+.+..|||.. +.+.+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 8888886 55567777754 3445544432 22 347888888 56666 666666 56799999996 778887
Q ss_pred ecC
Q 001258 1032 RIN 1034 (1113)
Q Consensus 1032 ~~~ 1034 (1113)
.|.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=0.00018 Score=86.53 Aligned_cols=207 Identities=6% Similarity=-0.040 Sum_probs=127.0
Q ss_pred CCccEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~ 892 (1113)
..+..++|++.+..|+.+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899999888888775 57899999875 22222222222345678888645666666566789999998754
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
.....+.........|++.|++.+|+.+.. . +.|..++++..... .... .. . .....++|+|++..|+.+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~--~~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESC--SS-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEe--CC-C---CCccEEEEeccCCEEEEE
Confidence 433333333345688999987665555443 2 67877777653211 1110 11 0 245789999987766664
Q ss_pred --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
..+.|.++++....................|++..+ .++++....+.|..++..+++.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433222211112234556666544 344455566889999998888887765
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.85 E-value=0.0022 Score=68.84 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=138.4
Q ss_pred EEEEEeCCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eeecccccCeEEEE
Q 001258 832 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA 909 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~ 909 (1113)
+|+.+....|+.+++..... ...+.........++|++.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 55566667899999986531 11111122356789999855666666667789999998765322 22222234567899
Q ss_pred EcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc---CCeEEEEeCCccce
Q 001258 910 FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC 985 (1113)
Q Consensus 910 ~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~---d~~v~v~d~~~~~~ 985 (1113)
+.+.+ .++++-...+.|.+++++...... .. ..+. .....+++.|.+.+|+.+. .+.|..++.+....
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~--~~~~----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LF--WQEL----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CSSC----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEE--EE--eCCC----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence 98754 445555567889999987632211 11 0111 2457899999766666643 46788888764332
Q ss_pred eeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258 986 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
..+.. ..-.....|+|++++..|+.+. ..+.|..+|++.......+. +.-.. |..++.. .+.++.+
T Consensus 158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~~--P~glav~--~~~lywt 224 (318)
T 3sov_A 158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GSLPH--PFALTLF--EDILYWT 224 (318)
T ss_dssp -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SCCSC--EEEEEEE--TTEEEEE
T ss_pred -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------CCCCC--ceEEEEe--CCEEEEE
Confidence 22221 1134678999999777776655 45789999987543322111 11122 2234544 3456666
Q ss_pred EeCCCcEEEEeccCCC
Q 001258 1065 GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1065 ~~~Dg~v~vW~~~~~~ 1080 (1113)
-...+.|..++..+|+
T Consensus 225 d~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 225 DWSTHSILACNKYTGE 240 (318)
T ss_dssp ETTTTEEEEEETTTCC
T ss_pred ecCCCeEEEEECCCCC
Confidence 6667899999998877
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.82 E-value=0.0047 Score=69.58 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=135.3
Q ss_pred CCcEEEEEcCC--CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258 359 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1113)
Q Consensus 359 ~~V~~~~~spd--g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1113)
.....++|+|+ +..|+++ ...+.|+.+|..+++... +.+.......++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 45689999995 3334444 333899999998776543 122334688999999999555
Q ss_pred EEeCC---Ce-EEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeec--cC
Q 001258 437 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG--HE 509 (1113)
Q Consensus 437 s~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~ 509 (1113)
+.... .. +...+...+.... ..+. .......+++.| ++. ++++-..++.|+.+|..++.....+.. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44321 22 3333333222111 1121 234567899999 565 555666778899999887766333321 11
Q ss_pred cCEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCCCe----eeeeCC-CCceEEEEEccCCCeEEeccccCceeEEEe-
Q 001258 510 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSR----VDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF- 582 (1113)
Q Consensus 510 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~- 582 (1113)
..-..++|++ ++. +.++-...+.|..+++...... ..+... ...- ..+|. .....-.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g-----~~dg~--~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPG-----WVDGM--GTGARLWGPNQGIFV 343 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCC-----CBCEE--GGGSBCSSEEEEEEE
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCc-----cCCCc--ccceEEcCCccEEEE
Confidence 2233577654 445 4555556788999887632111 111111 0000 00000 00000112334666
Q ss_pred --------cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC----------------CCCcCeEEEC-CCCCEEEEEE
Q 001258 583 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST 637 (1113)
Q Consensus 583 --------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~ 637 (1113)
.++++.+++-...+.|+.++. +|... .+.+.+. ......+++. +++.++++=.
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 555666666666788888885 55433 3322110 1224578888 5666655555
Q ss_pred CCCcEEEEEc
Q 001258 638 NDNGIKILAT 647 (1113)
Q Consensus 638 ~dg~i~iwd~ 647 (1113)
..+.|+.+++
T Consensus 422 ~n~rIr~i~~ 431 (433)
T 4hw6_A 422 DNHRVRKIAP 431 (433)
T ss_dssp GGTEEEEEEE
T ss_pred CCCEEEEEec
Confidence 5667777664
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.0051 Score=69.28 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=95.3
Q ss_pred CCcEEEEEcC-CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258 359 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1113)
Q Consensus 359 ~~V~~~~~sp-dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1113)
.....|+|+| ++..|.++- ..+.|+.+|..+++... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d-~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVG-EQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEE-BTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEe-CCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4668999998 455445543 33889999988765432 1123346889999999996666
Q ss_pred EeCC----C-eEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeec-cCc
Q 001258 438 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA 510 (1113)
Q Consensus 438 ~~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~ 510 (1113)
+... . .+.+.+. .+.... ...+. .......++++| ++. ++++-..++.|..++...+........ ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6541 2 3433443 333221 01222 234567889999 555 566666778999999876654222221 123
Q ss_pred CEEEEeeeecCCce-EEEEEecCCcEEEEEcCC
Q 001258 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 542 (1113)
....++|++ +|+ +.++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 456778655 446 455556678899988764
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0064 Score=68.41 Aligned_cols=253 Identities=8% Similarity=0.011 Sum_probs=140.1
Q ss_pred ceEEEEEeC-CCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE----
Q 001258 753 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 826 (1113)
Q Consensus 753 ~i~~~~~s~-~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~---- 826 (1113)
....++|+| ++..|+++.. .+.|++.|+. ++.+....-.+...-.....++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3554555544 3556655543 22222211111112335788999
Q ss_pred ---ecCCCEEEEEeC-C-------eEEEEECCC-Ccee-----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258 827 ---SKNDSYVMSASG-G-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1113)
Q Consensus 827 ---s~~~~~l~~~sd-g-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~ 889 (1113)
+++|++|+++.+ + .|.+++... +... ..+. .-.....++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 999997777763 2 266665443 2221 1222 11245678899966777777778889999999
Q ss_pred c-------ccee-----------eeee--cccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcccc--cccc-cc-
Q 001258 890 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQK--NRFL-QI- 944 (1113)
Q Consensus 890 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~~~~~--~~~~-~~- 944 (1113)
. ++.. ...+ .+.....+.|+|+|+|++|. +-+..+.|+.++.+...... .... -.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 7 4543 1122 12234467999999999644 44567788886654321100 0000 00
Q ss_pred -CCCCCC------CCCCCc-eEEEc-------cCCcEEEE-EcCCeEEEEeCCccceeeccccC------------C---
Q 001258 945 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 993 (1113)
Q Consensus 945 -~~~~~~------~~~~i~-~~~~s-------pdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~------------~--- 993 (1113)
..+... .-.... .++.. ++|.++++ ..+..|+.++. +|.. .++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence 011100 001223 44554 45666555 47788999984 4532 222211 1
Q ss_pred -------CCCCeeEEEECCC-CCEEEEEeCCCcEEEEecCCCcee
Q 001258 994 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus 994 -------h~~~v~~l~~s~d-g~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
.-.....|+++++ |.+.++=..+..|+.++++.....
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1234678999997 666666556778999988765554
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0076 Score=67.81 Aligned_cols=252 Identities=9% Similarity=0.009 Sum_probs=143.1
Q ss_pred CccEEEEec-CCCEEEEEe--CCeEEEEECCCCceeeeecCC---CCCeeEEEE-------ecCCCcEEEEEecCC----
Q 001258 820 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS---- 882 (1113)
Q Consensus 820 ~v~~l~~s~-~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~d~~~la~g~~dg---- 882 (1113)
....|+|+| +...|.++. .+.|+++|+.++......... ......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455565555 367999999886665444322 235789999 99 777565555443
Q ss_pred ---cEEEEEccc-ceee-----eeecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-------CCcc------c--
Q 001258 883 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 937 (1113)
Q Consensus 883 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~-------~~~~------~-- 937 (1113)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 122211 23467889994 5555666678889999997 4432 0
Q ss_pred --cccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--cccee--eccc----cCCC---------CC
Q 001258 938 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA 996 (1113)
Q Consensus 938 --~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~~--~~~~----~~~h---------~~ 996 (1113)
.......... .....++|+|+|.+|+++ ....|+.++.. ++... ..+. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011111111 235789999999966554 66788886543 33210 1111 0111 12
Q ss_pred Cee-EEEEC-------CCCCEEEEEeCCCcEEEEecCCCceeeecCCC-c----------ccCCC---cc-cCccceEEE
Q 001258 997 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPS-A----------YLPAG---VS-SNVHPLVIA 1053 (1113)
Q Consensus 997 ~v~-~l~~s-------~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~-~----------~~~~g---h~-~~v~~i~~~ 1053 (1113)
... .++.. ++|.+.++=....+|+.++ .+|... ++.-. . -...| .. .--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 4566666666778899999 556433 33211 0 00011 00 012355678
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1054 AHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1054 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+.+.+|.++++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 887446666766667889998887655
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.69 E-value=0.012 Score=71.27 Aligned_cols=206 Identities=6% Similarity=-0.057 Sum_probs=128.6
Q ss_pred CCCccEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~ 891 (1113)
...+.++++++.+..|+.+. .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 44577899998777777665 588999998753 223333334456788999984556666666788999999875
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1113)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~ 969 (1113)
......+........+|++.|.+.+|..+.. + +.|...+++...... .. ..+ . .....+++++.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv--~~~-l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TEN-I---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE--CSS-C---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EE--eCC-C---CCceEEEEecCCCeEEE
Confidence 4433333344456899999998666666553 2 678888887633211 11 111 1 24578999987777776
Q ss_pred E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeec
Q 001258 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
+ ....|..+++....................|++. +.+|+.+. ..+.|...+..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4 5668999998655443333211223345567763 33555444 5577888887777554444
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.67 E-value=0.015 Score=62.39 Aligned_cols=209 Identities=11% Similarity=0.011 Sum_probs=122.5
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE-EE
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV 437 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as 437 (1113)
..+.+++|.+.+..|..+-...+.|..++...+..... ++...-.....+++.+.+..| .+
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 45779999997776777766778899999876532110 011112346678998755544 44
Q ss_pred EeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEe-eccCcCEEEE
Q 001258 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYSV 515 (1113)
Q Consensus 438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 515 (1113)
-...+.|.++++....... .+.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-...+.+
T Consensus 97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEE
T ss_pred ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEE
Confidence 4566889999987643221 12234456789999997764 33333 345788888865 3333333 2223456788
Q ss_pred eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1113)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1113)
++++.. +.+.++-+..+.|..+|++.................+++.. +..+.+-...
T Consensus 172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~ 228 (318)
T 3sov_A 172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWST 228 (318)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTT
T ss_pred EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCC
Confidence 876543 35556666678899998864332222221222233333321 1234444456
Q ss_pred CcEEEEECCCCceEEEEc
Q 001258 596 FSIKFWDMDSVQLLTSID 613 (1113)
Q Consensus 596 g~i~iwd~~~~~~~~~~~ 613 (1113)
+.|..++..+++....+.
T Consensus 229 ~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 229 HSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCCceEEEe
Confidence 778888887776655543
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.61 E-value=0.0059 Score=64.63 Aligned_cols=191 Identities=10% Similarity=0.135 Sum_probs=118.7
Q ss_pred CcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC----CC---EEEEEe-C--CCcEEEEeCCCCccccccc
Q 001258 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLVSSG-A--DSQLCVWSSDGWEKQKNRF 941 (1113)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~L~s~s-~--D~~v~iwd~~~~~~~~~~~ 941 (1113)
..+++.....+.+.+||+ +|+.++.+.. +.++.+..-|+ |+ +++... . +++|.+|+++..... .
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---L 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---E
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---e
Confidence 345665667789999999 7888888864 56777776653 22 223333 3 578999988532211 1
Q ss_pred cccCCC--C-CCCCCCCceEEE--ccC-Cc-EEEE-EcCCeEEEEeC-------CccceeeccccCCCCCCeeEEEECCC
Q 001258 942 LQIPTG--R-TPTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD 1006 (1113)
Q Consensus 942 ~~~~~~--~-~~~~~~i~~~~~--spd-g~-~l~~-~~d~~v~v~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1113)
...... . ......+..+++ +|. ++ ++++ ..++.+..|++ .+.+.++.+.. .+.+..+...+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence 111000 0 000135677888 774 54 4444 47789999888 34566777765 457889999999
Q ss_pred CCEEEEEeCCCcEEEEecC-----CCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEe-CCCcEEEEecc
Q 001258 1007 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1077 (1113)
Q Consensus 1007 g~~l~s~~~Dg~v~vwd~~-----~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~-~Dg~v~vW~~~ 1077 (1113)
..+|+.+-+|.-|..++.+ +++.+..+.. .+-...+..+.+-..+ +++ +|++++ .++++.+||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-----g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-----RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-----SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecC-----CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 9999999998666666644 3455554421 0122356666554444 444 555444 67899999996
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.50 E-value=0.026 Score=59.12 Aligned_cols=205 Identities=11% Similarity=0.078 Sum_probs=125.2
Q ss_pred CCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeee-ecC----CC--CCeeEEEE---ecCCCcEEEEEec-----
Q 001258 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 880 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~la~g~~----- 880 (1113)
.--..+++|++....+..++ .++|..|+...+..... +.. .. ..+..+.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 44456899988666666666 89999999976543332 322 11 13578999 68 6888876442
Q ss_pred --------CCcEEEEEcc---cceeeeeec--ccc-----------cCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 001258 881 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 935 (1113)
Q Consensus 881 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~L~s~s~D-~~v~iwd~~~~~ 935 (1113)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 777664443 211 247899999999999998887 776666655431
Q ss_pred cccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce--eeccccCC--CCCCeeEE-EECCCCCE
Q 001258 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL 1009 (1113)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~--~~~~~~~~--h~~~v~~l-~~s~dg~~ 1009 (1113)
. ........... .......++++|||..|++. ..+.+..+|+.+... +..-..+. .......| ..-.+|+.
T Consensus 171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 1 11111111111 11246799999999988884 588899999884332 11110011 11123333 33457777
Q ss_pred -EEEEeCCCcEEEEecCC
Q 001258 1010 -VYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 1010 -l~s~~~Dg~v~vwd~~~ 1026 (1113)
|++.+..+.+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555566666655543
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.46 E-value=0.065 Score=64.77 Aligned_cols=207 Identities=11% Similarity=0.014 Sum_probs=115.2
Q ss_pred CcceEEEEEcCCCCeEE-EEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258 420 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1113)
Q Consensus 420 ~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~ 497 (1113)
...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 44678999999655554 4455678999988753210 011123334456788999988875 55666678899999977
Q ss_pred CCceeeEeeccCcCEEEEeeeecCCceEEEEEecC-CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1113)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 576 (1113)
.......+.........|++.+.. +.+.++-... +.|...+++.......+.........|++.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD-------------- 566 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD-------------- 566 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE--------------
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEe--------------
Confidence 544333333344567788876543 3444444333 667777765432222222222334444444
Q ss_pred eeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 577 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 577 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
+.+..|+.+. ..+.|...++........+...........|++.. ++++++-...+.|...+..++
T Consensus 567 -------~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 567 -------LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp -------TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -------cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 4333455543 45678888886554444443322222334566532 234444445577888887776
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.45 E-value=0.00073 Score=81.31 Aligned_cols=228 Identities=8% Similarity=0.017 Sum_probs=130.2
Q ss_pred EEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----ceeeeeecccccCeEEE
Q 001258 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGL 908 (1113)
Q Consensus 833 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l 908 (1113)
|+.+..+.|++.++.+......+. ....+..++|++.++.++++-...+.|+.+++.. ......+........+|
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred EEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 344445678888887765544433 2345778999984444444445667999999875 22222222222345678
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--c-CCeEEEEeCCccc
Q 001258 909 AFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H-ETQLAIFETTKLE 984 (1113)
Q Consensus 909 ~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~-d~~v~v~d~~~~~ 984 (1113)
++.+. ++++++-...+.|.+++++...... ... .+. .....++++|++.+|+.+ . .+.|.++++....
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~--~~~----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR--EQG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECC--CSS----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEe--CCC----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 88854 4445554567889999987643211 111 110 235789999976666653 2 2678887775432
Q ss_pred eeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258 985 CVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
. ..+.. ..-.....|+|+|++..|+.+. ..+.|.+++++.......+... +.-..... +++.. +.+++
T Consensus 531 ~-~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~~~~~P~g--lavd~--~~lyw 599 (699)
T 1n7d_A 531 I-YSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----KRLAHPFS--LAVFE--DKVFW 599 (699)
T ss_dssp C-CEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----SSCSSCCC--CEEET--TEEEE
T ss_pred e-eEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----CcCCCceE--eEEEC--CEEEE
Confidence 2 22211 1134567899999876665554 5578999999754333222110 11112222 44443 34566
Q ss_pred EEeCCCcEEEEeccCCC
Q 001258 1064 LGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1064 s~~~Dg~v~vW~~~~~~ 1080 (1113)
+....+.|..++..+++
T Consensus 600 td~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 600 TDIINEAIFSANRLTGS 616 (699)
T ss_dssp ECSTTTCEEEEETTTEE
T ss_pred EeCCCCeEEEEEccCCC
Confidence 66667899999987777
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.33 E-value=0.2 Score=51.88 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=68.0
Q ss_pred CeEEEEECCCC---cee-----ee--ec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE
Q 001258 839 GKISLFNMMTF---KTM-----AT--FM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1113)
Q Consensus 839 g~i~vwd~~~~---~~~-----~~--~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1113)
++++|.++... ... .. +. ....-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 68999998532 111 11 11 1233456788888 566888889999999999999999988777777787
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~ 935 (1113)
.-+...+..-++.....|.|.--.++...
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 66666555566677788888777776643
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.29 E-value=0.29 Score=52.83 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=69.6
Q ss_pred CeEEEEECCCC---ce-----eee--ec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE
Q 001258 839 GKISLFNMMTF---KT-----MAT--FM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1113)
Q Consensus 839 g~i~vwd~~~~---~~-----~~~--~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1113)
++++|.++... .. ... +. ....-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 78999998542 11 011 11 1233457788888 666888889999999999999999987777777887
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258 907 GLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~ 935 (1113)
.-+...+..-++.....|.|.--.++...
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEcccc
Confidence 77776666677777788888877776643
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.20 E-value=0.19 Score=54.57 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1113)
.-...+.++|.|||+ ++++ ..+|.|.+++ .++..... ++. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence 445679999999998 4554 5669999998 44321110 100 11222346789999998 55
Q ss_pred eEEEEeC-C-----CeEEEEEccCCcee--eeee-eee---cccCCeeEEEEcCCCCeeEEEEe
Q 001258 434 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 485 (1113)
Q Consensus 434 ~las~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~V~~v~~s~~~~~~~l~s~ 485 (1113)
+|.++.. + +.|..|+...+..- +.+. .+. +.......++|.|||. +.++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5554433 2 67888888754211 1111 122 1112346899999996 44443
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.18 E-value=0.37 Score=51.99 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=151.1
Q ss_pred ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeec
Q 001258 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 899 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~ 899 (1113)
..+.-++|..+.+|.-...++.|||+++.+.+..+.-.. .|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFd 143 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (494)
T ss_dssp CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhee
Confidence 456778899998888888999999999988888776433 566666654 35666665 56899999964 34555555
Q ss_pred ccc----cCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC----
Q 001258 900 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---- 964 (1113)
Q Consensus 900 ~h~----~~V~~l~~s~d~~~L~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---- 964 (1113)
-|. ..|..-..+++.+|++..|- .|.+.+|+.+.+. -+..+||.. ....+-.+|
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~ 212 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE 212 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSE
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCC
Confidence 443 46777888999999885543 3678899988743 233444421 222222222
Q ss_pred -cEEEEEc----CCeEEEEeCCcc---c------eeecc-ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258 965 -IHFLVVH----ETQLAIFETTKL---E------CVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus 965 -~~l~~~~----d~~v~v~d~~~~---~------~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
..++.+. .++++|.++... . .+..+ .++.-..-..++..|+.-..++..+.-|.|.+||++++..
T Consensus 213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 2233332 268999988543 1 11112 2223356677889999888999999999999999999999
Q ss_pred eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258 1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus 1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
+.+-+. ....|. ..+... ...=++.....|.|.--.+.+..
T Consensus 293 i~~nrI-------s~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 293 IYMNRI-------SGETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEC-------CSSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeecc-------cCCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 876541 112232 122233 22334445578877776666544
No 308
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.17 E-value=0.00032 Score=56.23 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc
Q 001258 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1113)
Q Consensus 1 ~~~~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1113)
|+..+.||+.||..||.|.||..||-+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788899999999999999999999999999999864
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.10 E-value=0.098 Score=56.90 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCce--eeeec---CCCCCeeEEEEecC---CCcEEEEEecC-----CcEEE
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI 886 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~d-----g~v~i 886 (1113)
....++|.|+|+++++-.+|.|++++ +++. +..+. ........++|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999976665589999998 3332 11121 12346889999993 24444444432 67888
Q ss_pred EEcccc-----ee-eeeec---ccccCeEEEEEcCCCCEEEEEe
Q 001258 887 YNVRVD-----EV-KSKLK---GHSKRITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 887 wd~~~~-----~~-~~~l~---~h~~~V~~l~~s~d~~~L~s~s 921 (1113)
|+...+ +. +..+. +.......|+|.|||.+.++.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 887643 11 22233 1111236899999998777754
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.08 E-value=0.13 Score=55.99 Aligned_cols=231 Identities=13% Similarity=0.118 Sum_probs=123.1
Q ss_pred CCccEEEEecCCCEEEEEeCCeEEEEECCCCc-eeeeec---CCCCCeeEEEEecC---CCcEEEEEec---C----CcE
Q 001258 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 884 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~---d----g~v 884 (1113)
.....++|.|+|+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999998777666899999974 443 222221 12345889999993 3555444432 3 567
Q ss_pred EEEEcccc-------eee-eeecc-cccCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcccccc--
Q 001258 885 QIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKNR-- 940 (1113)
Q Consensus 885 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~L~s~s~D-------------~~v~iwd~~~~~~~~~~-- 940 (1113)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. +.|.-++.+.. .....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77776543 111 11221 11124679999999888775432 34444444321 00000
Q ss_pred --ccccCCCCCCCCCCCceEEEcc-CCcEEEEE--cCC--eEEEEeCCccce------------------eeccccCCCC
Q 001258 941 --FLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLEC------------------VKQWVPRESS 995 (1113)
Q Consensus 941 --~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~~--~d~--~v~v~d~~~~~~------------------~~~~~~~~h~ 995 (1113)
......++ .....++|+| +|.++++- .+. .|.+.. .+.- +..+. .. .
T Consensus 187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~-~ 258 (354)
T 3a9g_A 187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SE-T 258 (354)
T ss_dssp TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TC-C
T ss_pred CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CC-C
Confidence 00011111 1357899999 67766652 222 233332 2220 11110 11 3
Q ss_pred CCeeEEEEC-------CCCCEEEEEeCCCcEEEEecCCC-ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258 996 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus 996 ~~v~~l~~s-------~dg~~l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
.....++|. .+|.++++....+.|...+++.. +....- ..+. +... .+..+++.| ||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~~~~--rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-NVFG--RLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-TTSC--CEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-CCCC--CeeEEEECC-CCcEEEEEe
Confidence 457788883 57777777666778888888753 322110 0111 1112 344578888 677666654
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.04 E-value=0.39 Score=49.71 Aligned_cols=247 Identities=8% Similarity=0.070 Sum_probs=150.2
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
.-.+|..+ ++|.-. ..++.|+|+++.+++....+ ...|..=.|-.+. .|+-.+ +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CCc
Confidence 34578777 566654 67899999999988875322 2367777776444 444443 456
Q ss_pred EEEEEccCCceeeeeeeeeccc----CCeeEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258 444 VQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1113)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1113)
|.-|++.+..... +.+.-|. ..|..-..+++.++ ++++|- -.|.+.+|..+.+ .-+.+.||.+...
T Consensus 128 VyHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 128 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 203 (365)
T ss_dssp EEEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred EEEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeE
Confidence 9999998643322 2344332 35777788899996 333332 2467889986654 4467788876655
Q ss_pred EEeeeecCCce-EEEEEec---CCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258 514 SVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1113)
Q Consensus 514 ~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 588 (1113)
.+.+....... ++..+.. .+.+++-++... ... ..-......+.|.|+.. .+-...+..++.-..
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kygv 273 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTTE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCCE
Confidence 54432222212 3333322 257888887543 111 11122244455555433 223445667777778
Q ss_pred EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1113)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 650 (1113)
++..+.-|.|++||+.++.++..-..... .|...+.+.+..-++.....|.|.-..+...
T Consensus 274 iyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 274 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 99999999999999999999887664432 4544444444444555567787776666555
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.00 E-value=0.56 Score=50.82 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1113)
.-...+.|+|.|||+ |+++ ..+|.|.+++ .+++ .....+. +..........|+|+|+ +.
T Consensus 27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence 456789999999998 4554 5569999997 3444 1100000 11122346889999998 55
Q ss_pred eEEEEeC----C----CeEEEEEccCC--ce--eeee-eeee-cccCCeeEEEEcCCCCeeEEEEe
Q 001258 434 LFGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC 485 (1113)
Q Consensus 434 ~las~~~----d----~~i~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~v~~s~~~~~~~l~s~ 485 (1113)
+|.++.. + ..|..|+...+ .. .+.+ ..+. +.......|+|.|||. +.++.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 5544432 3 56777887654 11 1111 1122 1111347899999997 44443
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.97 E-value=0.098 Score=55.71 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=117.3
Q ss_pred CEEEEEe---CCeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC----CcEEEEEcccce--eeeeec
Q 001258 831 SYVMSAS---GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLK 899 (1113)
Q Consensus 831 ~~l~~~s---dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~--~~~~l~ 899 (1113)
.+++.|+ ...+.+||..+.+-.. .+....... +++. - ++.+++.|+.+ ..+.+||..+.+ .+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3445554 2579999988754322 222212222 2222 2 67788888765 578899988754 222222
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-c-
Q 001258 900 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H- 971 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~- 971 (1113)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+=.. ....+..+ .-..+ ..-+++.++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r-----~~~~~-~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT--KPSMLTQR-----CSHGM-VEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE--ECCCSSCC-----BSCEE-EEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe--CCCCcCCc-----ceeEE-EEECCEEEEECCCC
Confidence 21111222222 67777888765 458889987743211 11111111 11222 23366666653 2
Q ss_pred --------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcc
Q 001258 972 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus 972 --------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
-..+.+||..+.+....-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . .
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~ 233 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---P 233 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---C
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---C
Confidence 3458899998876443321111 111112222 267777777654 3588999988754422 1 1
Q ss_pred cCCCcccCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258 1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus 1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
.+..... . .++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 234 ~p~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 MPWKGVT--V--KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CSCCBSC--C--EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCccc--e--eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2211111 1 12222 56788888855 468888888865
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.90 E-value=0.061 Score=58.02 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee----
Q 001258 823 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---- 894 (1113)
Q Consensus 823 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~---- 894 (1113)
-.....+|..++.+.++.||.-++.....-+.+... ...|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345567889999999999999998754444444332 23688999999 999999886 55899988873210
Q ss_pred ------e--eeecc------cccCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001258 895 ------K--SKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 895 ------~--~~l~~------h~~~V~~l~~s~d---~~~L~s~s~D~~v~iwd~~~ 933 (1113)
+ ..+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1 11211 3567999999985 56899999999999999987
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.90 E-value=0.17 Score=52.95 Aligned_cols=164 Identities=10% Similarity=0.085 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE---cCCCCeEEE
Q 001258 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW---SPDGSLFGV 437 (1113)
Q Consensus 361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spdg~~las 437 (1113)
..+.+|.+....++++.-..++|..||...+..... .+. ++... ......+..|.| .|+++++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~~---------g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASSN---------GDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCCS---------SCCSEEEEEEEESSSSSCCEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Ccccc---------CCCcceeeEEEEeccCCCCcEEEE
Confidence 357899887665566655789999999976543321 100 00000 011124589999 688888876
Q ss_pred EeC-------------CCeEEEEEcc---CCceeeeeeeeeccc-----------CCeeEEEEcCCCCeeEEEEecCC-C
Q 001258 438 AYS-------------RHIVQIYSYH---GGDEVRQHLEIDAHV-----------GGVNDIAFSHPNKQLCVITCGDD-K 489 (1113)
Q Consensus 438 ~~~-------------d~~i~iwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~~~~~~~l~s~s~d-~ 489 (1113)
... +..|..+|+. +++.+... .|.... .....++..++|. ..++++.- +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCCC
Confidence 442 6779999999 77655322 232221 2488999999999 67777777 7
Q ss_pred cEEEEeCCCCceeeEeecc------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258 490 TIKVWDATNGAKQYIFEGH------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1113)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1113)
.|...+.. |+.+..+... ....+.|++++ +|.+|+.....|.|..+|+..
T Consensus 160 ~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 77777744 4433333211 12245677654 456777776699999999884
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.89 E-value=0.14 Score=55.65 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=124.2
Q ss_pred CccEEEEecCCC-EEEEEeCCeEEEEECCCCcee---eee----cCCCCCeeEEEEecC---CCcEEEEEec-------C
Q 001258 820 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 881 (1113)
Q Consensus 820 ~v~~l~~s~~~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~s~~---d~~~la~g~~-------d 881 (1113)
....++|.|+|+ ++++-..|.|++++... ... ..+ .........++|+|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 66655589999998543 221 111 112345689999993 3544444332 2
Q ss_pred CcEEEEEcccc-------eee-eeec-----ccccCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001258 882 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 935 (1113)
Q Consensus 882 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~L~s~s~D-------------~~v~iwd~~~~~ 935 (1113)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.++++.+.. +.|.-++.+..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~- 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE- 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence 35666666432 111 1111 132 3579999999777765442 34555555432
Q ss_pred cccccc---------cccCCCCCCCCCCCceEEEcc-CCcEEEE--EcCCeEEEEeCCcccee-----------------
Q 001258 936 KQKNRF---------LQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHETQLAIFETTKLECV----------------- 986 (1113)
Q Consensus 936 ~~~~~~---------~~~~~~~~~~~~~i~~~~~sp-dg~~l~~--~~d~~v~v~d~~~~~~~----------------- 986 (1113)
...... .....++ .....++|+| +|.++++ +.++.=.|.-+..+.-.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 100000 0001111 1357899999 6666665 22222233322222110
Q ss_pred -------ecccc----CCCCCCeeEEEECC-------CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc
Q 001258 987 -------KQWVP----RESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048 (1113)
Q Consensus 987 -------~~~~~----~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~ 1048 (1113)
..+.. -.+...+..++|.. +|.++++....+.|...+++.++...... .+. +... .
T Consensus 251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~~--r 324 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DRGQ--R 324 (353)
T ss_dssp TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GGCC--C
T ss_pred cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CCCC--c
Confidence 00000 01123566778753 57777776677888888887654432211 111 1112 3
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258 1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus 1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
+..+++.| ||.++++.. ++.=+||.+.
T Consensus 325 p~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 325 IRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp EEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred eeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 44588888 777666433 2223555553
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.72 E-value=0.099 Score=55.51 Aligned_cols=217 Identities=9% Similarity=0.049 Sum_probs=112.4
Q ss_pred CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEcccce-----eeeeecccccCeE
Q 001258 839 GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT 906 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~ 906 (1113)
..+.+||..+.+-.. .+...... .+++. . ++.+++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY-VASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc-ccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 368899987654322 12211111 22222 3 67788888865 368999987654 3322222222222
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC-----CeE
Q 001258 907 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL 975 (1113)
Q Consensus 907 ~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d-----~~v 975 (1113)
.+.+ +++.++.|+.++ .+.+||+.+.+-.. ....+... ....+...+++.++.+ .+ ..+
T Consensus 108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM--LGDMQTAR------EGAGLVVASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE--EEECSSCC------BSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE--CCCCCCCc------ccceEEEECCEEEEECCCCCCcccceE
Confidence 2222 677777776543 57888887643211 11111111 1122222366666663 32 468
Q ss_pred EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcccCCCcccCccce
Q 001258 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050 (1113)
Q Consensus 976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i 1050 (1113)
.+||..+.+....-.... ...-.+++ .-++++++.|+.+ ..+.+||..+.+-...-. .+..... .
T Consensus 178 ~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~--~-- 247 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMAT-KRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCY--V-- 247 (301)
T ss_dssp EEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBS--C--
T ss_pred EEEeCCCCcEEeCCCCCc-ccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccc--e--
Confidence 899988776543321111 11111222 2367777777764 468999998876543211 1211111 1
Q ss_pred EEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258 1051 VIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus 1051 ~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
.+... ++.+++.|+.+ ..+.++|+.+.+
T Consensus 248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 12222 56777888766 357888888755
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.69 E-value=0.19 Score=53.28 Aligned_cols=229 Identities=12% Similarity=0.121 Sum_probs=116.9
Q ss_pred CCEEEEEe-C----CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccce--ee
Q 001258 830 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VK 895 (1113)
Q Consensus 830 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~--~~ 895 (1113)
+.+++.|+ + ..+..||+.+.+-... +..... -.+++. - ++.+++.|+.++ .+.+||..+.+ .+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34455554 2 4588899876543222 111111 122222 2 677888887553 58899987653 22
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258 896 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1113)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~ 970 (1113)
..+......-..+.+ +++.++.|+.++ .+.+||+.+.+=.. ....+..+ .-..++ .-+++.++.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r-----~~~~~~-~~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH--VAPMNTRR-----SSVGVG-VVGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE--ECCCSSCC-----BSCEEE-EETTEEEEEC
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee--cCCCCCcc-----cCceEE-EECCEEEEEe
Confidence 222221122222222 677778887653 47788877643211 11111111 112222 2356666653
Q ss_pred -c-------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCc
Q 001258 971 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus 971 -~-------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
. -..+.+||..+.+....-.... ...-.+++ .-++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 2358899998776543321111 11111222 2267777888765 368999998875543211
Q ss_pred ccCCCcccCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeccCCCccccC
Q 001258 1038 YLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1085 (1113)
Q Consensus 1038 ~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~ 1085 (1113)
.+..... . .++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 -~~~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 -MNMCRRN--A--GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -CSSCCBS--C--EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCCcccc--C--eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111111 1 12222 567888887664 48899988865 554
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.46 E-value=0.36 Score=51.00 Aligned_cols=188 Identities=7% Similarity=0.011 Sum_probs=98.2
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCc---e--eeeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEccc
Q 001258 828 KNDSYVMSAS-G-----GKISLFNMMTFK---T--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 891 (1113)
Q Consensus 828 ~~~~~l~~~s-d-----g~i~vwd~~~~~---~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~ 891 (1113)
.+++.++.|+ + ..+.+||..+.+ - +..+...... .+++. . ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 4666666665 3 459999988755 2 2222211122 22222 2 677888887543 688999876
Q ss_pred ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+=... ...+.. .....+..-++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~------r~~~~~~~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATK------RSGAGVALLND 207 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSC------CBSCEEEEETT
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcc------cccceEEEECC
Confidence 43 33333221111222222 67777877765 4588899877432111 111111 11122223356
Q ss_pred cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus 965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
+.++.+ .+ ..+.+||..+.+....-...........+ .-++++++.|+.+ ..|.+||..+.+-.
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666663 32 46899999887654332211111111222 2367777777765 35788888776543
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.40 E-value=0.58 Score=49.81 Aligned_cols=219 Identities=11% Similarity=0.101 Sum_probs=112.1
Q ss_pred CCeEEEEECCCCceee-eecCCCCCeeEEEEecCCCcEEEEEec----C-------CcEEEEEcccce--eeeeeccccc
Q 001258 838 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----D-------SSIQIYNVRVDE--VKSKLKGHSK 903 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~----d-------g~v~iwd~~~~~--~~~~l~~h~~ 903 (1113)
...+.+||..+.+-.. .+..........+... ++.+++.|+. + ..+.+||..+.+ .+..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 4678999998766432 2221222333333344 7788888884 1 127888887754 2222221111
Q ss_pred CeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEE-c-C
Q 001258 904 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E 972 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D--------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~-~-d 972 (1113)
.-..+.+ +++.++.|+.+ ..+.+||..+.+= .... .+.. .....+...+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW---GESDPLPYV------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE---EECCCCSSC------CBSCEEEEETTEEEEECCBCT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE---eECCCCCCc------ccceeEEEECCEEEEEeCCCC
Confidence 1122222 56777777742 4588889877431 1111 1111 11222333566666664 3 2
Q ss_pred -----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC-----cEEEEecCCCceeeecCCCcccCCC
Q 001258 973 -----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus 973 -----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc
Confidence 368999998775443321111 11111222 23777888887654 48889998875543211 1111
Q ss_pred cccCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEeccCCC
Q 001258 1043 VSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESE 1080 (1113)
Q Consensus 1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~ 1080 (1113)
... . .++.. ++.+++.|+.++ .+.++|+.+.+
T Consensus 234 r~~--~--~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 RSS--L--SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp CBS--C--EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ccc--e--eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111 1 12222 567778877642 36778887765
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.37 E-value=0.33 Score=51.63 Aligned_cols=228 Identities=12% Similarity=0.074 Sum_probs=116.8
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEec----C-----CcEEEEEccc
Q 001258 828 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 891 (1113)
Q Consensus 828 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~----d-----g~v~iwd~~~ 891 (1113)
-++..++.|+ + ..+.+||..+.+-... +...... .+++. . ++.+++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3556666665 2 4688999876543222 1111111 22332 2 6678888776 2 3688999876
Q ss_pred ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+=... ...+... .-..++. -++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r-----~~~~~~~-~~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV--APMLTRR-----IGVGVAV-LNR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC--CCCSSCC-----BSCEEEE-ETT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC--CCCCccc-----cceEEEE-ECC
Confidence 53 22222221122222233 67777777644 3588888877432111 1111111 1122222 256
Q ss_pred cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeec
Q 001258 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~ 1033 (1113)
+.++.+ .+ ..+.+||..+.+....-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 666653 32 4689999887765433211111111122222 67777777765 4599999988755432
Q ss_pred CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus 1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
. ..+..... . .++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 247 ~---~~p~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 247 A---PMKHRRSA--L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C---CCSSCCBS--C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C---CCCCCccc--e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 11211111 1 12222 56778887754 357888888765
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.29 E-value=0.36 Score=51.23 Aligned_cols=229 Identities=8% Similarity=-0.033 Sum_probs=109.8
Q ss_pred CeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC----CeE
Q 001258 371 QTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIV 444 (1113)
Q Consensus 371 ~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i 444 (1113)
.++++.|+.+ ..+.+||..+++-.... ..+. ...+| .++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~----------~~p~---~r~~~----~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR----------CPFE---KRRDA----ACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECC----------CCSC---CCBSC----EEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCC----------CCCc---cccee----EEEE--ECCEEEEEeCCCCCCcceE
Confidence 4467777653 57889998876543210 0000 01122 2222 267777888755 568
Q ss_pred EEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC------CcEEEEeCCCCceeeE--eeccCcCEEEEe
Q 001258 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------KTIKVWDATNGAKQYI--FEGHEAPVYSVC 516 (1113)
Q Consensus 445 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~ 516 (1113)
.+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-... +......-.++.
T Consensus 73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 899998875332 2222211111122222 455 56666654 4688999887653322 111111111111
Q ss_pred eeecCCceEEEEEec---------CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258 517 PHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1113)
Q Consensus 517 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 587 (1113)
. ++.+++.|+. -..+.+||+.+..-...-. .|..+ .-..+... ++.
T Consensus 148 --~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-----------~p~~r---------~~~~~~~~-~~~ 202 (306)
T 3ii7_A 148 --A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-----------MIEAR---------KNHGLVFV-KDK 202 (306)
T ss_dssp --E--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-----------CSSCC---------BSCEEEEE-TTE
T ss_pred --E--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-----------ccchh---------hcceEEEE-CCE
Confidence 1 3356666654 2347777776542111100 01110 00001111 233
Q ss_pred EEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----CcEEEEEcCCC
Q 001258 588 RFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDG 650 (1113)
Q Consensus 588 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 650 (1113)
.++.|+.+ ..+.+||+.+.+....-..... .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 44555432 4688999988754433221111 11112222267788888754 45778887765
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.25 E-value=1.4 Score=47.14 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=107.1
Q ss_pred CCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eee----cCCCCCeeEEEEecC---CCcEEEEEe--cCCcEEE
Q 001258 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIGM--DDSSIQI 886 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~s~~---d~~~la~g~--~dg~v~i 886 (1113)
.....++|.|||+++++-. .|.|++++..+++.. ..+ .........++|+|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4578999999999888887 799999987655432 112 122445789999983 344444322 3456666
Q ss_pred EEcccc----------eee-eeec---ccccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCccccc
Q 001258 887 YNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQKN 939 (1113)
Q Consensus 887 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~L~s~s~-------------D~~v~iwd~~~~~~~~~ 939 (1113)
|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. .+.|.-.+.+.. ....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence 665431 111 1221 243 357999999998888653 233444444321 0000
Q ss_pred cc----cccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceee-----------cc-----ccCCCCCC
Q 001258 940 RF----LQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVK-----------QW-----VPRESSAP 997 (1113)
Q Consensus 940 ~~----~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~-----------~~-----~~~~h~~~ 997 (1113)
.. .....++ .....++|+|+|.+.++ +.++.-.|--+..+.-.. .+ ....+...
T Consensus 189 nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 189 NPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp CSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 00 0011122 23578999999887777 344433333333332110 00 00011134
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 998 ITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
...++|. +|.+++..-..+.|....++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 5567775 4555555555555655565543
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.20 E-value=1.4 Score=49.48 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCccEEEEecCCCEEEEEeC-CeEEEEECCCCcee--eeecC------CCCCeeEEEEecC---CCcEEEEEec------
Q 001258 819 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------ 880 (1113)
Q Consensus 819 ~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---d~~~la~g~~------ 880 (1113)
....+++|.|+|+++++-.. +.|++++..+++.. ..+.. .......++|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47998886555432 22221 2345779999994 4444444332
Q ss_pred ------CCcEEEEEcccc-------eee-eeecc-cccCeEEEEEcCCCCEEEEEeC
Q 001258 881 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 922 (1113)
Q Consensus 881 ------dg~v~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~L~s~s~ 922 (1113)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655321 111 11221 1123688999999998887664
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.19 E-value=0.54 Score=50.45 Aligned_cols=186 Identities=10% Similarity=0.011 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCeEEEEe------------CCCeEEEEEccCC--ceeeeeeeeec-----ccCCeeEEEEcC--CCCee
Q 001258 422 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGG--DEVRQHLEIDA-----HVGGVNDIAFSH--PNKQL 480 (1113)
Q Consensus 422 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~--~~~~~~~~l~~-----h~~~V~~v~~s~--~~~~~ 480 (1113)
....++..|+|..+++++ .+|.|.++|.++. +.. .+ .+.+ .......+.+.+ ++...
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-EL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-EC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 456777889886666652 6899999999843 322 11 2333 234566777755 45432
Q ss_pred EEEEecC--CCcEEEEeCCCCce----eeEeecc-CcCEEEEeeeecCCceEEEEEec---C--------------CcEE
Q 001258 481 CVITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK 536 (1113)
Q Consensus 481 ~l~s~s~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d--------------g~i~ 536 (1113)
+++.-.. +.+|.+|++..+.. +..+.+. -...+.+.+. ++|.+.++... | |.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333332 57888888765422 2233322 2345666654 34455555431 1 2233
Q ss_pred EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCC-CceE--EEE
Q 001258 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQLL--TSI 612 (1113)
Q Consensus 537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~ 612 (1113)
.+|. .+ ...+...-. ....++|+|+++.++.+. ..+.|+.|++.. ++.. ..+
T Consensus 207 r~d~--~~-~~~~~~~l~---------------------~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 207 YYSP--ND-VRVVAEGFD---------------------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp EECT--TC-CEEEEEEES---------------------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred EEEC--Ce-EEEeecCCc---------------------ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 3322 11 111111111 223455555555565544 578899998863 3321 223
Q ss_pred ccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258 613 DADGGLPASPRIRFNK-DGCLLAVSTN 638 (1113)
Q Consensus 613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~ 638 (1113)
.. ....-.+++.+ +|++.+++..
T Consensus 263 ~~---~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 263 SF---DTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EC---SSEEEEEEECTTTCCEEEEEES
T ss_pred eC---CCCCceEEEeCCCCcEEEEecC
Confidence 21 12345677887 4877776553
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.05 E-value=2.1 Score=46.18 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CCe
Q 001258 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 434 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 434 (1113)
-...+.|+|.|+|+++++ +...|.|.+++.. ++... .+ -++ . .+.....+....|+|+|| +.+
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~-------~-~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGV-------P-DVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSC-------C-CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCC-------c-ccccCCCCCceeEEECCCCCCCCE
Confidence 346799999999985344 4567999999853 32210 00 000 0 012222446789999996 444
Q ss_pred EEEE-eC-------CCeEEEEEccCCc-eeeeeee-eec------ccCCeeEEEEcCCCCeeEEEEe
Q 001258 435 FGVA-YS-------RHIVQIYSYHGGD-EVRQHLE-IDA------HVGGVNDIAFSHPNKQLCVITC 485 (1113)
Q Consensus 435 las~-~~-------d~~i~iwd~~~~~-~~~~~~~-l~~------h~~~V~~v~~s~~~~~~~l~s~ 485 (1113)
|..+ .. ...|..|++..+. .+..... +.. ....-..|+|.|||. +++..|
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 148 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG 148 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence 4443 22 2356667765431 1111111 111 111246799999995 344443
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.04 E-value=0.42 Score=59.74 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=126.5
Q ss_pred ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeec
Q 001258 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 899 (1113)
Q Consensus 821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~ 899 (1113)
..+.-++|..+.+|.-...++.|||+++.+.+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 34566788888888877889999999988777766533 3455556653 45666555 55899999964 23444444
Q ss_pred cc----ccCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258 900 GH----SKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1113)
Q Consensus 900 ~h----~~~V~~l~~s~d~~~L~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~ 968 (1113)
-| ...|..-..+++.+|++..|- .|.+.+|+++.+.. +..+||......+..-...+....++
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F~~~~~~~~~~~~~l~~ 217 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASFAQFKMEGNAEESTLFC 217 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhhheeccCCCCCCceEEE
Confidence 44 456778888899999886543 47788998877432 23333322100000000011122222
Q ss_pred EEc----CCeEEEEeCCcc---c------eeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258 969 VVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus 969 ~~~----d~~v~v~d~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
.+. .++++|.++... . .+..+. +..-..-..++..|+.-..++..+.-|.|.++|+.|+..+.+-+
T Consensus 218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 232 267888887443 1 111111 12224556678888888888889999999999999998886543
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.015 Score=61.85 Aligned_cols=199 Identities=6% Similarity=0.018 Sum_probs=107.6
Q ss_pred cEEEEEecCCcEEEEEcccceeeeeeccc-ccCeEEEEE---cCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCCC
Q 001258 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF---SHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1113)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~L~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1113)
.++++++.||.|+-+|..+|+.+-++... ..++....- ..++..++.. +.||.|..++..++.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887654 122222110 0123333333 589999999988764321111110000
Q ss_pred CCCCCCCCceEEE------------ccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCC-----eeEEEEC-----C
Q 001258 948 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 1005 (1113)
Q Consensus 948 ~~~~~~~i~~~~~------------spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~ 1005 (1113)
..-+.. +.+|..++.+.++.+...|+.+|+.+..+....-... ..|.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 011111 2455444557999999999999999988764321111 1112111 1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccc
Q 001258 1006 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus 1006 dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1083 (1113)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+....+.+.. .... ..|+.+ +.++.||.|...|..+|+..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677777777777777 4554 33222111111111000000 0000 114555 446889999999998888777
No 329
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.83 E-value=0.0082 Score=47.82 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCccH--HHHHHHhhccCHHHHHHHhcc
Q 001258 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KYFEDEVHNGNWDDVEKYLSG 59 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~~~~ 59 (1113)
++|+.+-|++||..+||.+++.+|.+|.++..+- ..--.-+++-.|..++++=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5689999999999999999999999999988751 223455677778776655443
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.80 E-value=0.14 Score=55.35 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe-------eeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1113)
Q Consensus 359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1113)
+.|..+..||+|++ ||.- .+.+|.|-.+..+..... ...+.+.++. .......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~l-LAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDL-LCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSE-EEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCE-EEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 47889999999995 5554 366899988874432211 0011222211 0112467899999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCceeee-------eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258 431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1113)
Q Consensus 431 --dg~~las~~~d~~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd 495 (1113)
.|..|++-..|+.|++||+........ ...+..+...|.+++|..++-.+|+++....|.|.-..
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 567899999999999999986331111 01122333578888888877766666666666665443
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.72 E-value=1.1 Score=47.71 Aligned_cols=226 Identities=8% Similarity=-0.062 Sum_probs=106.9
Q ss_pred EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-----C------
Q 001258 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----R------ 441 (1113)
Q Consensus 373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------ 441 (1113)
+++.|+ ..+.+||..+++-.. . .+..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~-----------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-A-----------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-E-----------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEec-C-----------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566666 579999998876321 0 01111122233344458888888873 1
Q ss_pred CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCceee--EeeccCcC
Q 001258 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQY--IFEGHEAP 511 (1113)
Q Consensus 442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 511 (1113)
..+.+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+++-.. .+......
T Consensus 67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 127788888765322 1111111111112222 444 55666632 458899988764321 11111111
Q ss_pred EEEEeeeecCCceEEEEEec-C-----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258 512 VYSVCPHHKENIQFIFSTAL-D-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1113)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 585 (1113)
-.++. -++.+++.|+. + ..+.+||..+..-...-. .|..+ ....++ .-+
T Consensus 142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-----------~p~~r---------~~~~~~-~~~ 196 (315)
T 4asc_A 142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-----------MQTAR---------SLFGAT-VHD 196 (315)
T ss_dssp CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC-----------CSSCC---------BSCEEE-EET
T ss_pred eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC-----------CCCch---------hceEEE-EEC
Confidence 11111 13356677765 2 357777776532111000 01111 000011 113
Q ss_pred CCEEEEEecCC-----cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC--------------cEEEEE
Q 001258 586 KNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN--------------GIKILA 646 (1113)
Q Consensus 586 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd 646 (1113)
+..++.|+.++ .+.+||+.+.+....-..... .....+..-++++++.|+.++ .+.+||
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEec
Confidence 34455565443 588999988765443222211 112222233667788777532 366777
Q ss_pred cCCC
Q 001258 647 TSDG 650 (1113)
Q Consensus 647 ~~~~ 650 (1113)
+.+.
T Consensus 275 ~~~~ 278 (315)
T 4asc_A 275 EEEK 278 (315)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7665
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.69 E-value=0.17 Score=49.27 Aligned_cols=149 Identities=8% Similarity=0.002 Sum_probs=82.7
Q ss_pred CCcEEEEEecCCcEEEEEccccee-----eeeeccc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258 871 DNNIIAIGMDDSSIQIYNVRVDEV-----KSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1113)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1113)
...+|....+| +|+.=...++.. ..+..++ =..++.++|+|+|.+.+. .+|.++-.+..+.......-..
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566666666 655544333321 1111122 246789999999987766 6676655555432221111110
Q ss_pred cCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeecccc------CCCCCCeeEEEECCCCCEEEEEeCCC
Q 001258 944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP------RESSAPITHATFSCDSQLVYACFLDA 1017 (1113)
Q Consensus 944 ~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~s~~~Dg 1017 (1113)
..-+.... ..-..+.|.|+|.+.++ .|+.|.-++..+.... .|.. ..--..+..|.|.|+|.+.++. |+
T Consensus 80 t~IG~~Gw-~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 80 KKIGNGGW-NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp EEEECSCG-GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred cEeccccc-ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 00000000 11368899999999888 7798887776432211 1110 0113578999999999877666 88
Q ss_pred cEEEEecCCC
Q 001258 1018 TVCVFSAANL 1027 (1113)
Q Consensus 1018 ~v~vwd~~~~ 1027 (1113)
.++-+...++
T Consensus 155 ~lyr~~~P~~ 164 (236)
T 1tl2_A 155 QFYKALPPVS 164 (236)
T ss_dssp EEEEECCCSS
T ss_pred cEEecCCCCC
Confidence 7655554433
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.66 E-value=0.54 Score=49.69 Aligned_cols=188 Identities=11% Similarity=0.072 Sum_probs=89.6
Q ss_pred CCCeEEEEeCC-----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC-----cEEEEeCCCCc
Q 001258 431 DGSLFGVAYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----TIKVWDATNGA 500 (1113)
Q Consensus 431 dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-----~i~iwd~~~~~ 500 (1113)
+++.++.|+.+ ..+.+||..+.+-.. ...+......-.++.+ +++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777754 358889988765332 2122111111122222 444 555565443 57888887765
Q ss_pred eeeE--eeccCcCEEEEeeeecCCceEEEEEecC-------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258 501 KQYI--FEGHEAPVYSVCPHHKENIQFIFSTALD-------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1113)
Q Consensus 501 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 571 (1113)
-... +........++. . ++.+++.|+.+ ..+.+||+.+..-... .-.|..+.
T Consensus 136 W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~---- 196 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGV--V--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----------AEMSTRRS---- 196 (302)
T ss_dssp EEEECCCSSCCBSCEEEE--E--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----------CCCSSCCB----
T ss_pred EeecCCCCCcccCceEEE--E--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----------CCCccccc----
Confidence 3322 111111111111 1 33566666543 3467777765321111 00011110
Q ss_pred cccCceeEEEecCCCCEEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-----c
Q 001258 572 FRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-----G 641 (1113)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~ 641 (1113)
...++.+ ++..++.|+.+ ..+.+||+.+.+....-.... ......+...++++++.|+.++ .
T Consensus 197 ----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 268 (302)
T 2xn4_A 197 ----GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLAS 268 (302)
T ss_dssp ----SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCBCSSSBCCC
T ss_pred ----cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--ccccCeEEEECCEEEEECCcCCCccccc
Confidence 0011111 23345555543 478999998876544322211 1112222233677888877553 4
Q ss_pred EEEEEcCCC
Q 001258 642 IKILATSDG 650 (1113)
Q Consensus 642 i~iwd~~~~ 650 (1113)
+.+||+.+.
T Consensus 269 v~~yd~~~~ 277 (302)
T 2xn4_A 269 VEYYNPTTD 277 (302)
T ss_dssp EEEEETTTT
T ss_pred EEEEcCCCC
Confidence 788888765
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.59 E-value=0.53 Score=51.22 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=48.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC--C--ceeeeecCCCCCeeEEEEecCCCcEEEEEec-C---------CcEEEEEcccc
Q 001258 829 NDSYVMSAS--GGKISLFNMMT--F--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRVD 892 (1113)
Q Consensus 829 ~~~~l~~~s--dg~i~vwd~~~--~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-d---------g~v~iwd~~~~ 892 (1113)
+++.++.|+ ...+.+||..+ . ..+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 677777776 46799999864 2 2222222111112223332 5778888876 2 46899998774
Q ss_pred e--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258 893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1113)
Q Consensus 893 ~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D 923 (1113)
+ .+..+. ........+...++++++.|+.+
T Consensus 97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 3 222222 01111111222477888888865
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.37 E-value=0.26 Score=47.99 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=84.6
Q ss_pred CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC--------eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSS 931 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~L~s~s~D~~v~iwd~ 931 (1113)
..+..++|+| ++.+.++ .+|.++-.+..+... ..+.+.... -.++.|.++|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3678999999 8888777 678776666544211 111111122 378999999998888 5698887775
Q ss_pred CCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeec-----cccCCCCCCeeEEEECCC
Q 001258 932 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-----WVPRESSAPITHATFSCD 1006 (1113)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~-----~~~~~h~~~v~~l~~s~d 1006 (1113)
.+............-+.. .-..+..+.|.|+|.+.++. ++.+.-....+.....- .........-.-+.|+++
T Consensus 115 P~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CCSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CcCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 443322211110000000 00256889999999999998 88864433332221110 111111233445668888
Q ss_pred CCEEEEEeCCCcE
Q 001258 1007 SQLVYACFLDATV 1019 (1113)
Q Consensus 1007 g~~l~s~~~Dg~v 1019 (1113)
+.+.++- +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8766554 6633
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.22 E-value=2.2 Score=45.22 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=108.7
Q ss_pred CeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEec----CC-------cEEEEEccccee--eeeecccccC
Q 001258 839 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR 904 (1113)
Q Consensus 839 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~----dg-------~v~iwd~~~~~~--~~~l~~h~~~ 904 (1113)
..+..||..+.+-... ...........+... ++.+++.|+. ++ .+.+||..+.+- +..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588899887654331 221122222233334 6788888873 12 277888876432 2222221111
Q ss_pred eEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEE-c----
Q 001258 905 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-H---- 971 (1113)
Q Consensus 905 V~~l~~s~d~~~L~s~s~D-------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~-~---- 971 (1113)
-..+.+ +++.++.|+.+ ..+.+||+.+.+= .... .+... .-..++ ..+++.++.+ .
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r-----~~~~~~-~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW---SEVKNLPIKV-----YGHNVI-SHNGMIYCLGGKTDDK 171 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE---EEECCCSSCE-----ESCEEE-EETTEEEEECCEESSS
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE---eECCCCCCcc-----cccEEE-EECCEEEEEcCCCCCC
Confidence 222222 67777777754 2477888776431 1111 11111 112222 2566666663 2
Q ss_pred --CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcccCCCcc
Q 001258 972 --ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1113)
Q Consensus 972 --d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~~~~gh~ 1044 (1113)
-..+.+||..+.+....-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . ..|....
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~ 245 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERS 245 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCB
T ss_pred CccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCccc
Confidence 1358999998876443321111 111112222 367777777654 3477899887754432 1 1221111
Q ss_pred cCccceEEEEeCCCCCEEEEEeCC--------------CcEEEEeccCCC
Q 001258 1045 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1080 (1113)
Q Consensus 1045 ~~v~~i~~~~~p~d~~~l~s~~~D--------------g~v~vW~~~~~~ 1080 (1113)
. . .+... ++.+++.|+.+ ..+.++|+.+.+
T Consensus 246 ~--~--~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 246 S--I--SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp S--C--EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred c--e--EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 1 12222 56777777754 357788888755
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.20 E-value=2.3 Score=44.90 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=95.8
Q ss_pred CCCEEEEEeC----------CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEccc
Q 001258 829 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 891 (1113)
Q Consensus 829 ~~~~l~~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~ 891 (1113)
+++.++.|+. +.+.+||..+.+-... +....... +++.. ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 3588999876543222 22111122 22222 66788887754 3688999876
Q ss_pred ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+=... ...+.. ..-..++. -++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~-----r~~~~~~~-~~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTI-----RSGAGVCV-LHN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCCSSC-----CBSCEEEE-ETT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCCCCc-----cccceEEE-ECC
Confidence 53 22222211122222233 67777777765 4588888876432111 111111 11122222 266
Q ss_pred cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus 965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
+.++.+ .+ ..+.+||+.+.+....-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666663 33 569999998876543322111 111112222 267777777754 34778888776543
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.14 E-value=1.6 Score=54.71 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=48.4
Q ss_pred eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1113)
Q Consensus 862 i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~ 933 (1113)
..++..|+ .-.++..-+.-|.|++||+.|+.++..-+-....|...+......-++.....|.|.--.++.
T Consensus 261 pv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 261 PVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred ceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 45677777 556778888999999999999998866555555665555544434445555666666555554
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.12 E-value=4 Score=45.61 Aligned_cols=248 Identities=13% Similarity=0.137 Sum_probs=139.1
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeeec-CCCCCeeEEEEe--cCCCcEEEEEec-------CCcE---------EE
Q 001258 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 886 (1113)
Q Consensus 828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s--~~d~~~la~g~~-------dg~v---------~i 886 (1113)
.||+||..-. +..|...+++..++-+.+. .....+..+.|- | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5789999987 5789999999888766553 245568888886 5 5567776653 3321 11
Q ss_pred E---EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCC-------cccccc-
Q 001258 887 Y---NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQKNR- 940 (1113)
Q Consensus 887 w---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~---------------~v~iwd~~~~-------~~~~~~- 940 (1113)
| |..+.+...++.- .+..-.+...++|++.++.+.+. .+.++++... +.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1112111111110 11222344567788888776542 2556664321 111000
Q ss_pred -ccccCCCCC------------CCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccce-------------eeccccC
Q 001258 941 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 992 (1113)
Q Consensus 941 -~~~~~~~~~------------~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~-------------~~~~~~~ 992 (1113)
-..+..+.. +.......+.++|||++++++ -+.++.++|.++... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111345789999999999995 567899999875322 11222
Q ss_pred CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC----------ceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258 993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~----------~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
-.......+|.++|.-..+-..|..|.-|++... ..+.++.++ |.| ||...... =.-.| ||++|
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-Yqp-GH~~~~~g--et~~~-dGk~l 449 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQP-GHLHASLC--ETNEA-DGKWL 449 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCE-EEEEETTT--TSTTC-CSCEE
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-cCC-cccccCCC--ccCCC-CccEE
Confidence 1456788999999955566668999999999753 344444422 222 44221110 00012 67787
Q ss_pred EEEeC---CC----------cEEEEeccCCCccccC
Q 001258 1063 ALGLS---DG----------GVHVFEPLESEGKWGV 1085 (1113)
Q Consensus 1063 ~s~~~---Dg----------~v~vW~~~~~~~~~~~ 1085 (1113)
++... |. +-.+.||+..++++-.
T Consensus 450 v~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~ 485 (638)
T 3sbq_A 450 VALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVH 485 (638)
T ss_dssp EEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred EEecccccccCcCCCCCCCCcceeEecCCCceEEEe
Confidence 77643 33 3467777666654433
No 340
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=94.85 E-value=0.084 Score=48.83 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=54.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccCC
Q 001258 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYG 134 (1113)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 134 (1113)
++.. ++|+|+-|.||||+..|...+|..|+++.-.-+.....+.+++|..+....+...++....+.
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr 114 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR 114 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHH
Confidence 4444 999999999999999999999999999776666666778888998888777776666555443
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.49 E-value=7.8 Score=43.39 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=71.8
Q ss_pred CCCccEEEEecCCCEEEEEe--CCeEEEEECCCCce-------------eeeecCCCCCeeEEEEecCCCcEEEEEecCC
Q 001258 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1113)
Q Consensus 818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg 882 (1113)
......+.++|||+++++++ +.++.|+|+..... ....+ -.-.....+|.+ +|.-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 44556789999999999998 78999999874211 11222 233467889999 776666667899
Q ss_pred cEEEEEcccc----------eeeeeecccccCeEEEEE------cCCCCEEEEEeC
Q 001258 883 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSGA 922 (1113)
Q Consensus 883 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~L~s~s~ 922 (1113)
.|.-|++... ..+.++.-|-. +-.+.- .+||++|++...
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence 9999999763 45666666654 334443 479999999753
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.36 E-value=5.9 Score=41.44 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=99.6
Q ss_pred EecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--------------CcEEEEE
Q 001258 826 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 888 (1113)
Q Consensus 826 ~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d--------------g~v~iwd 888 (1113)
++.++.+|.... ++.|...+.+... ...+.. -.+--+++ ++.+|...... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777765 4777777765443 333321 12345677 66666665542 3677777
Q ss_pred cccceeeeeecccccCeEEEEEcCCCCEEEEEe--CCC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1113)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s--~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg 964 (1113)
+..++. ..+... . +..|++++++|+-.. .++ .|..-+++.... ..+.. . .+ .+++++|
T Consensus 95 ~dg~~~-~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHGS-TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSD 156 (302)
T ss_dssp TTSCCC-EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEET
T ss_pred CCCCcc-eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEEC
Confidence 765542 223211 1 236777899988776 344 455555554321 11111 1 11 3568899
Q ss_pred cEEEEEc--CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC--CcEEEEecCCCce
Q 001258 965 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKL 1029 (1113)
Q Consensus 965 ~~l~~~~--d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~vwd~~~~~~ 1029 (1113)
+.|+... ..+|.+.++..+.....+. +... ..+.|++++|+-...+ ..|..-+++.+..
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 9988764 4678888887765443322 1222 3466999998876544 3576777766553
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.28 E-value=3.4 Score=44.63 Aligned_cols=58 Identities=9% Similarity=-0.052 Sum_probs=30.6
Q ss_pred eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC------cEEEEecCCCceeeec
Q 001258 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRI 1033 (1113)
Q Consensus 974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg------~v~vwd~~~~~~~~~~ 1033 (1113)
.+.+||+.+.+....-.... ......+...++++++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSS--CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCC--CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 57789988765433211111 1111222335788888888653 3666688888777544
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.52 Score=50.06 Aligned_cols=146 Identities=11% Similarity=0.008 Sum_probs=73.1
Q ss_pred CCeEEEEECCCCceeeeecC----CCCCeeE---EEE-----ecCCCcEEEEEecCCcEEEEEcccceeeeeecccc--c
Q 001258 838 GGKISLFNMMTFKTMATFMP----PPPAATF---LAF-----HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--K 903 (1113)
Q Consensus 838 dg~i~vwd~~~~~~~~~~~~----~~~~i~~---l~~-----s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~--~ 903 (1113)
||.|..++..+|.....+.. ...++.. ..+ +. .+..+.+|+.+|.+.-.|+.+|+.+.++.... +
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~ 144 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG 144 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC
T ss_pred CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc
Confidence 78888888877654333211 1111111 001 00 23477889999999999999999998875321 1
Q ss_pred C-----eEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCCceEEEccCCcEEEEEcC
Q 001258 904 R-----ITGLAFS-----HALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1113)
Q Consensus 904 ~-----V~~l~~s-----~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~~~~d 972 (1113)
. ..|.... ..+..|+.+..+..+.+.+ .+++ .+... ..................+.|+.++++..|
T Consensus 145 ~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~d 221 (339)
T 2be1_A 145 YFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRD 221 (339)
T ss_dssp --------------------CCEEEEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETT
T ss_pred cccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcEEEECCC
Confidence 0 0011110 1235677677666666655 3332 11100 000000000000001112345777666788
Q ss_pred CeEEEEeCCccceee
Q 001258 973 TQLAIFETTKLECVK 987 (1113)
Q Consensus 973 ~~v~v~d~~~~~~~~ 987 (1113)
+.|..+|..+|..+.
T Consensus 222 g~v~A~d~~~G~~~W 236 (339)
T 2be1_A 222 KSLLASDLDFRIARW 236 (339)
T ss_dssp TEEEEECSTTCCEEE
T ss_pred CEEEEEECCCCcEEE
Confidence 888888888777654
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.13 E-value=3.8 Score=43.34 Aligned_cols=191 Identities=9% Similarity=0.015 Sum_probs=95.8
Q ss_pred EEecCCCEEEEEe-C----C-------eEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecC-------Cc
Q 001258 825 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 883 (1113)
Q Consensus 825 ~~s~~~~~l~~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~ 883 (1113)
+...+++.++.|+ . + .+.+||..+.+-... +...... .+++.. ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccce
Confidence 3445677777775 1 1 177788776543221 2211111 222322 56788888764 35
Q ss_pred EEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccc-cCCCCCCCCCC
Q 001258 884 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQS 954 (1113)
Q Consensus 884 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 954 (1113)
+.+||..+.+ .+..+......-..+. .++++++.|+.+ ..+.+||+.+.+= .... .+... .
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r-----~ 198 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW---KDLAPMKTPR-----S 198 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE---EEECCCSSCC-----B
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE---EECCCCCCCc-----c
Confidence 8888987643 2222211111111222 367777777642 3588999887431 1111 11111 1
Q ss_pred CceEEEccCCcEEEE-EcC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC------------
Q 001258 955 DTRVQFHQDQIHFLV-VHE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------ 1016 (1113)
Q Consensus 955 i~~~~~spdg~~l~~-~~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------------ 1016 (1113)
-..++. -+++.++. +.+ ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.+
T Consensus 199 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~ 275 (318)
T 2woz_A 199 MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPT 275 (318)
T ss_dssp SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE-EETTEEEEECCBCCBC----CCBCC
T ss_pred cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE-EECCEEEEECCeeccCCCCceeccc
Confidence 122322 35666565 322 357789988776543321111 11111222 2367777777754
Q ss_pred --CcEEEEecCCCceee
Q 001258 1017 --ATVCVFSAANLKLRC 1031 (1113)
Q Consensus 1017 --g~v~vwd~~~~~~~~ 1031 (1113)
..+.+||..+.+-..
T Consensus 276 ~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 276 EVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp BCCCEEEEETTTTEEEE
T ss_pred eeeeEEEEeCCCCEehh
Confidence 347888888766543
No 346
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=94.09 E-value=0.053 Score=48.82 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=50.1
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhcc
Q 001258 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK 132 (1113)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 132 (1113)
++.. ++|+|+-|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....++..++....
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~ 92 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYT 92 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHH
Confidence 4554 999999999999999999999999999776666666 788888888777776665554443
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.02 E-value=4.7 Score=41.69 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=114.4
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.|..++....- .++.. ||.|..|-......+-........|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56777765443 33333 89999998664332221111223577777653 344444 4 9999999865422111111
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d 979 (1113)
.-...|..++...+. .+... ||.|+.|-........ ..... ...|..++...+.. ++.. |+.|..|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-~~~~~-------~~~i~~i~~G~~~~-~~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-VPAEA-------QSGVTALDGGVYTA-LAVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEE-EEEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-CCccC-------CCCeEEEEcccCEE-EEEE-CCEEEEec
Confidence 113468888776543 33334 9999999765532211 01100 02344444433332 2224 78888887
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
......+.... .-...|..++-..+...++ .||.|+.|=....-.+. .|......|.. ++.- ..
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg-------~p~~~~~~v~~--i~~G--~~ 229 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTT-------VPTEALSGVSA--IASG--EW 229 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTC-------CCGGGGSSCCE--EEEC--SS
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCC-------CCcccCCCceE--EEcC--CC
Confidence 65433222111 1134677777655443333 59999999765432221 11011123443 3322 23
Q ss_pred CEEEEEeCCCcEEEEeccC
Q 001258 1060 NEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1060 ~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
..++.. ||.|+.|=-..
T Consensus 230 h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CEEEEE--TTEEEEESTTC
T ss_pred EEEEEE--CCEEEEecCCC
Confidence 445544 99999996544
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.91 E-value=3.4 Score=46.28 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=61.8
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC--CCCCCCceEEEccC---CcEEEEE--c----
Q 001258 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H---- 971 (1113)
Q Consensus 903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~spd---g~~l~~~--~---- 971 (1113)
...++|+|.|||+++++-...+.|++++..++.... ......... ........++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 457899999999988775544568888765443211 111111110 01235678999995 5555442 2
Q ss_pred --------CCeEEEEeCCcc-------ceee-ccccCCCCCCeeEEEECCCCCEEEEEeC
Q 001258 972 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus 972 --------d~~v~v~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
...|.-|+.... +.+. .+. .........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 134555554321 1111 122 121235789999999987776554
No 349
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.89 E-value=7.9 Score=41.19 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1113)
.-...+.|+|.|||+ ++++-...|.|++++..+++......+ ..+.....+....|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 457789999999998 566655589999998766553211000 0022334567899999995 34
Q ss_pred eEEEE-e--CCCeEEEEEccCCc----e---eeeee-eee-cccCCeeEEEEcCCCCeeEEEEe
Q 001258 434 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 485 (1113)
Q Consensus 434 ~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~~~~~~~l~s~ 485 (1113)
+|... + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44432 2 34566667665521 1 11111 121 1112356799999997 45553
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.50 E-value=2.4 Score=50.67 Aligned_cols=194 Identities=10% Similarity=0.080 Sum_probs=103.7
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeee-c-------CCCCCeeEEEEecCCCcEEEEEecCC------cEEEEE
Q 001258 828 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 888 (1113)
Q Consensus 828 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~la~g~~dg------~v~iwd 888 (1113)
.++..++.|+ + +.+.+||..+.+-...- . .......++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5666777665 2 45889998776533222 1 1111233334432 567888887543 588999
Q ss_pred cccc--eeeeeecccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccccccccc----cCCCCCCCCCCCceEEE
Q 001258 889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQ----IPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~ 960 (1113)
..+. +.+..+......- +++...+++.++.||.++ .+.+||..+.. +.... .+.... ....+.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~----~~~a~v~ 546 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSL----VSAGLEF 546 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCC----BSCEEEE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCccc----ceeEEEE
Confidence 8873 3333322211111 222224788888888765 68899988743 22121 111111 1233555
Q ss_pred ccC-CcEEEEE-c--C-----CeEEEEeCCccce------eeccccCCCCCCeeEEEECCCCCEEEEEeCC--------C
Q 001258 961 HQD-QIHFLVV-H--E-----TQLAIFETTKLEC------VKQWVPRESSAPITHATFSCDSQLVYACFLD--------A 1017 (1113)
Q Consensus 961 spd-g~~l~~~-~--d-----~~v~v~d~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g 1017 (1113)
..+ ++.++.| . + ..+.+||+.+.+. ............-.+++...++++++.|+.+ .
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTT
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCC
Confidence 655 5555554 3 2 3588999988772 1111100001111233333447788888743 4
Q ss_pred cEEEEecCCCcee
Q 001258 1018 TVCVFSAANLKLR 1030 (1113)
Q Consensus 1018 ~v~vwd~~~~~~~ 1030 (1113)
.|.+||..+.+..
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5999999987665
No 351
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=93.30 E-value=0.043 Score=49.94 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=46.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhc
Q 001258 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS 131 (1113)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 131 (1113)
++.. ++|+|+-|.||||+..| .++|..|+.+.-.-+...+.+.+++|..+....++..++...
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~ 93 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVAS 93 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHH
Confidence 5554 99999999999999999 999999998665555444556666666666555555544443
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.30 E-value=9 Score=39.99 Aligned_cols=175 Identities=11% Similarity=0.110 Sum_probs=103.6
Q ss_pred EEEecCCCEEEEEe--C-------------CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCC--cE
Q 001258 824 FALSKNDSYVMSAS--G-------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDS--SI 884 (1113)
Q Consensus 824 l~~s~~~~~l~~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg--~v 884 (1113)
--++++|.+|+... + ..|+..+++..+...... . .+..|++ +++.|+... .++ .|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~----~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D----PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C----CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678999888775 2 257777877665333222 1 2336788 667777665 344 45
Q ss_pred EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
+.-++. +.....+..+.. .+|+++++.|.-.+. ..+|..-+++.+... .. ..+ . ....++|+
T Consensus 132 y~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~------~-~~~~~~P~ 194 (302)
T 3s25_A 132 YRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDC------N-CYKPVVLD 194 (302)
T ss_dssp EEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECS------C-EEEEEEEE
T ss_pred EEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCC------C-ccceeeec
Confidence 555554 333445544432 456788988887765 567888887765432 11 111 1 22346799
Q ss_pred CcEEEEEc---CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC--CCcEEEEecCCCc
Q 001258 964 QIHFLVVH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1028 (1113)
Q Consensus 964 g~~l~~~~---d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~--Dg~v~vwd~~~~~ 1028 (1113)
+.+|+.+. ...|..-++....... +. ...+ ..|+|++++|+-+.. .+.|..-+++...
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPNPVV-LT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCCCEE-CS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCEEEEEEcCCCcEEEEEECCCCCeEE-Ee----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 99988742 2467777777655332 22 2233 448889999886542 3567777776543
No 353
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.23 E-value=10 Score=40.47 Aligned_cols=165 Identities=12% Similarity=0.163 Sum_probs=91.2
Q ss_pred CCCcEEEEEcCCCCeEEEEEe-------------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258 358 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1113)
Q Consensus 358 ~~~V~~~~~spdg~~ll~~gs-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 424 (1113)
......+++.|+|. +.+++ .+|.|.++|..+..... ..+.+-. .+ +....-...
T Consensus 49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g-----~~-----~~~~~f~Ph 115 (355)
T 3sre_A 49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIG-----NT-----LDISSFNPH 115 (355)
T ss_dssp CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEEC-----SS-----CCGGGCCEE
T ss_pred CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccC-----CC-----CCcCceeee
Confidence 34567778899885 44444 68999999987432111 1111100 00 000122445
Q ss_pred EEEEcC--CCC-eEEEEe-C--CCeEEEEEccCC-ceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEEec----------
Q 001258 425 RVIWSP--DGS-LFGVAY-S--RHIVQIYSYHGG-DEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG---------- 486 (1113)
Q Consensus 425 ~l~~sp--dg~-~las~~-~--d~~i~iwd~~~~-~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s---------- 486 (1113)
.+.+.+ +|. +|.++. . +.+|.||++..+ .......++.+. -...+.+++.++|. +.++..
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence 566644 454 454442 2 567889888754 223333344432 23578999999998 556543
Q ss_pred -------CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCcEEEEEcCC
Q 001258 487 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDN 542 (1113)
Q Consensus 487 -------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 542 (1113)
..+.|..+|. ++ +..+...-..-+.++|+++ ++.++ +-+..+.|..|++..
T Consensus 194 ~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD--g~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD--GKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT--SSEEEEEEGGGTEEEEEEECT
T ss_pred chhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC--CCEEEEEeCCCCeEEEEEECC
Confidence 1234444543 43 3333333455688887654 44554 445678899999874
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.28 E-value=24 Score=38.49 Aligned_cols=247 Identities=9% Similarity=0.022 Sum_probs=111.3
Q ss_pred CCCccEEEEec--CCCEEEEEeCC----eEEEEECCCCceeeeec------C--------CCCCeeEEEEecCC-CcEEE
Q 001258 818 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA 876 (1113)
Q Consensus 818 ~~~v~~l~~s~--~~~~l~~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la 876 (1113)
...|.+|+++| .+...+.+..| .|...+ +.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 55566555554 444332 2232222211 1 11247788888643 44555
Q ss_pred EEecCCcEEEEEcccceeeeeecc-------------------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcc
Q 001258 877 IGMDDSSIQIYNVRVDEVKSKLKG-------------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEK 936 (1113)
Q Consensus 877 ~g~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~ 936 (1113)
++...+.|...+ ..++.-..+.. ....|.+|.+.|. ...|..+..++.|...+- .++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCC-
Confidence 566666655442 22222222210 1235788999873 344444444443443322 111
Q ss_pred cccccccc-CC-CCCC-----CCCCCceEEEccC-CcEEEEEcCCeEEEEeCCccceeecccc-CCC--CCCeeEEEECC
Q 001258 937 QKNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVP-RES--SAPITHATFSC 1005 (1113)
Q Consensus 937 ~~~~~~~~-~~-~~~~-----~~~~i~~~~~spd-g~~l~~~~d~~v~v~d~~~~~~~~~~~~-~~h--~~~v~~l~~s~ 1005 (1113)
....... .. ...+ ....+..+++.|+ ...+.++..+.|...+- .++.-..+.. ... ...+.+++++|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111110 00 0000 0024678888886 35555555555555442 2322222211 011 13456788876
Q ss_pred -CCCEEEEEeC-----------CCcEEEEecCC-CceeeecCCCcccCCCcc-cCccceEEEEeCCCCCEEEEEeCCCcE
Q 001258 1006 -DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVS-SNVHPLVIAAHPQEPNEFALGLSDGGV 1071 (1113)
Q Consensus 1006 -dg~~l~s~~~-----------Dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~-~~v~~i~~~~~p~d~~~l~s~~~Dg~v 1071 (1113)
+...|+++.. ++...||.... |+.-..+. ..++.... ..+....+++.|.++..|..++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3344544432 33345555443 33333332 11221100 011112367777666667667666664
Q ss_pred E
Q 001258 1072 H 1072 (1113)
Q Consensus 1072 ~ 1072 (1113)
.
T Consensus 366 ~ 366 (394)
T 3b7f_A 366 W 366 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.74 E-value=33 Score=36.82 Aligned_cols=156 Identities=8% Similarity=0.086 Sum_probs=87.1
Q ss_pred CeEEEEECCCC--ceeeeecCC------CCCeeEEEEe---cC---CCcEEEEEe-cCCcEEEEEcccceeeeeeccccc
Q 001258 839 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK 903 (1113)
Q Consensus 839 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1113)
-+|.+||+.+. +.++++.-. .+.+..+++. |. ++.++..+. ..+.|.|||+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 35777888887 777665422 3357778887 21 134444444 4678999999998877665322
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC----CcEEEEEcCCeEEEEe
Q 001258 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE 979 (1113)
Q Consensus 904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd----g~~l~~~~d~~v~v~d 979 (1113)
|.|+.....+. +|.-..|. ..+..+++||+ ++.|....-..-++|.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 34442121111 23222221 24678899988 7777775333334444
Q ss_pred CCcc-----c---eeeccccCCCCCCeeEEEEC-CCCCEEEEEeCCCcEEEEecCC
Q 001258 980 TTKL-----E---CVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 980 ~~~~-----~---~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
+.|. . .+..+-..+-...-..+++. .+|.+.++--....|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 3321 1 11111111111233456675 5777777777788899999875
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.70 E-value=12 Score=44.71 Aligned_cols=195 Identities=11% Similarity=0.062 Sum_probs=100.3
Q ss_pred CCcEEEEEecC----CcEEEEEcccce--eee-e-----ecccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeCC
Q 001258 871 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 932 (1113)
Q Consensus 871 d~~~la~g~~d----g~v~iwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~L~s~s~D~------~v~iwd~~ 932 (1113)
++.+++.|+.+ ..+.+||..+++ .+. . +......-..+.+..+++.++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777777754 368888887653 222 1 111111122333322777888887543 47788887
Q ss_pred CCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC--eEEEEeCCccceeeccc---cCCCCCCeeEEEECCC
Q 001258 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1006 (1113)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~--~v~v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1006 (1113)
+.+=.. ....+.. ..-..++.-.+++.++.| .++ .+.+||..+.+....-. .......-.++.+..+
T Consensus 477 t~~W~~--~~~~p~~-----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSM--IKSLSHT-----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEE--CCCCSBC-----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEE--CCCCCCC-----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 732111 1111111 111233333477777773 322 79999998876543321 0001112233555555
Q ss_pred -CCEEEEEeC--C-----CcEEEEecCCCce-----eeecCCC-cccCCCcccCccceEEEEeCCCCCEEEEEeCC----
Q 001258 1007 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPS-AYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD---- 1068 (1113)
Q Consensus 1007 -g~~l~s~~~--D-----g~v~vwd~~~~~~-----~~~~~~~-~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D---- 1068 (1113)
+++++.|+. + ..+.+||+.+... ...+... .....+|. +.... ++.+++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-------~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-------IKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-------EEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-------EEEeC-CCEEEEECCccCCCC
Confidence 677777775 2 3588999988772 1111100 00001111 12221 36777887743
Q ss_pred ----CcEEEEeccCCC
Q 001258 1069 ----GGVHVFEPLESE 1080 (1113)
Q Consensus 1069 ----g~v~vW~~~~~~ 1080 (1113)
..+.++|+.+.+
T Consensus 622 ~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET 637 (695)
T ss_dssp CCTTTSEEEEETTTTE
T ss_pred CCCCCeEEEEECCCCe
Confidence 468899998865
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.56 E-value=17 Score=40.57 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=61.4
Q ss_pred cCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC-----CCCCCCceEEEccC----CcEEEE-Ec
Q 001258 903 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH 971 (1113)
Q Consensus 903 ~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~spd----g~~l~~-~~ 971 (1113)
...+.|+|.|||. .|+.+...|.|++++.+... .......+..... ........++|+|+ +.+.++ +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4568999999996 45556778999999754321 1111111111000 01135678999997 443333 32
Q ss_pred C------------CeEEEEeCCcc----------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC
Q 001258 972 E------------TQLAIFETTKL----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017 (1113)
Q Consensus 972 d------------~~v~v~d~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1017 (1113)
+ ..|.-|.+..+ +.+..+...........|+|.|||.+.++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 13444555321 2222222112233468999999998777766443
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.46 E-value=66 Score=35.74 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc----CCCcceEEEEEcCC--
Q 001258 359 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 431 (1113)
Q Consensus 359 ~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 431 (1113)
...+.|+|.|||. ++++ +...|.|++++.... .... . +.++. ..+.. +..+....|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~-~~~~-~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGE-IFKE-P--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSC-BCSS-C--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCC-eeee-e--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 5669999999995 5454 467899999975422 1100 0 01110 00111 22467889999996
Q ss_pred --CCeEEEEeC--C----------CeEEEEEccCC--c-----eeeeeeeee--cccCCeeEEEEcCCCCeeEEEEec
Q 001258 432 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG 486 (1113)
Q Consensus 432 --g~~las~~~--d----------~~i~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s 486 (1113)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. .....-..|+|.|||. +|+.+|.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 444444332 1 13444666432 0 111221221 1122468999999997 3444443
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.34 E-value=47 Score=34.00 Aligned_cols=184 Identities=8% Similarity=0.013 Sum_probs=99.3
Q ss_pred CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1113)
Q Consensus 820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1113)
.|..++...+-..++ .||.|..|-......+-....-...|..++... ...+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566777654433333 489999998664322211111124577777654 3334445 9999999765422222212
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1113)
Q Consensus 900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d 979 (1113)
.....|..++...+.. ++ -. |+.|+.|-........ .+... ...|..++...+... +. .++.+..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-Cceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2345677777754433 23 33 7999999766532221 11111 023555555444333 33 689999997
Q ss_pred CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
......+..-. .....|..++-..+..++++ ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 65433222111 11345777776555444333 999999976654
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.68 E-value=69 Score=37.90 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=25.1
Q ss_pred EEE-EcCCCCeEEEEEecCC----cEEEEecCCcceeE
Q 001258 363 SMD-FHPVQQTLLLVGTNVG----DIGLWEVGSRERLV 395 (1113)
Q Consensus 363 ~~~-~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~ 395 (1113)
.+. ++||+++++++-|..| .|+++|+.+++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 444 8999998666655544 69999999988763
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.09 E-value=8 Score=47.88 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=50.7
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE---eCCCcEE
Q 001258 996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG---LSDGGVH 1072 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~---~~Dg~v~ 1072 (1113)
..+.+++..++..++++.+.|+++|+|++.+++++.........+.. ... .. ....|..+.++.+- ..+|.++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~-~~~-~~--~~~~~~~~~~i~v~~s~~~~g~F~ 311 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL-QSF-PY--LTSDHTTNSFIALYYPDNSHGSFS 311 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS-CCC-CC--EEECSSSTTEEEEEECCSSSCEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc-ccc-cc--cccCCCcccEEEEEEcCCCCcEEE
Confidence 45677888889999999999999999999999998876543222211 111 11 22233344443322 2357788
Q ss_pred EEeccCCC
Q 001258 1073 VFEPLESE 1080 (1113)
Q Consensus 1073 vW~~~~~~ 1080 (1113)
+|.+..+.
T Consensus 312 ~~~~~~~~ 319 (950)
T 4gq2_M 312 IYKLNANA 319 (950)
T ss_dssp EEEEEEC-
T ss_pred EEEEecCC
Confidence 88765433
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.42 E-value=74 Score=33.32 Aligned_cols=211 Identities=9% Similarity=0.061 Sum_probs=113.3
Q ss_pred cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec--
Q 001258 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-- 828 (1113)
Q Consensus 751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-- 828 (1113)
...+..+........++..+..|.++-..... . |.+. | ...|..+...+.- .....|.++..-+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~--l-p~~~---------r-~~~G~~i~~~l~l-~~~e~i~~~~~~~~~ 106 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYD--L-PEAS---------R-TARGQHVANLLAF-QPEERIAQVIQIRGY 106 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGG--S-CBCC---------S-SSCCEEHHHHTTC-CTTCCEEEEEEESST
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH--C-cCCC---------c-cCCCEEHHHccCC-CCCCEEEEEEEeccC
Confidence 34555555555666677777777665433210 0 0000 0 0123222222211 1345565554433
Q ss_pred -CCCEEEEEe-CCeEEEEECCCCcee-------eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc--cc-----
Q 001258 829 -NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR--VD----- 892 (1113)
Q Consensus 829 -~~~~l~~~s-dg~i~vwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~--~~----- 892 (1113)
+..+++..+ +|.++-..+...... ..+.. ...+..+.... +...|+..+..|.+..+... .-
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCT
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCc
Confidence 467777777 899999887653321 22332 33455555555 45677788899999888876 31
Q ss_pred ----eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc----c-cccccCCCCCCCCCCCceEE-Ecc
Q 001258 893 ----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----N-RFLQIPTGRTPTAQSDTRVQ-FHQ 962 (1113)
Q Consensus 893 ----~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~----~-~~~~~~~~~~~~~~~i~~~~-~sp 962 (1113)
...-.+. ....|.++...+++..|+.++..|.++.-.+....... . ..+.... .. ..+..+. ...
T Consensus 185 ~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~---d~lv~~~~~~~ 259 (327)
T 3uc1_A 185 ATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RR---GRLVGALIVDD 259 (327)
T ss_dssp TSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TT---CSEEEEEEECT
T ss_pred CCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CC---CeEEEEEEeCC
Confidence 1112232 24567777776677789999999999988876543221 1 1111111 01 1233333 334
Q ss_pred CCcEEEEEcCCeEEEEeCCc
Q 001258 963 DQIHFLVVHETQLAIFETTK 982 (1113)
Q Consensus 963 dg~~l~~~~d~~v~v~d~~~ 982 (1113)
+...++++.+|.+.-++...
T Consensus 260 ~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 260 DSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEEGGGCEEEEEGGG
T ss_pred CccEEEEcCCCeEEEEehhh
Confidence 44455557777777776654
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.08 E-value=68 Score=32.67 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=73.7
Q ss_pred CCCCccEEEEec-CCCEEEEEe-CCeEEEEECCCCc------eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258 817 PEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1113)
Q Consensus 817 ~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd 888 (1113)
....|.++.... +..+++..+ +|.++-..+.... ....+.. ...+..+.... +...++..+..|.+..++
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 355666665421 466777777 8999999876543 1122332 23455555554 556788889999999888
Q ss_pred ccc---------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258 889 VRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1113)
Q Consensus 889 ~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~ 934 (1113)
... |.....+.. .+.|.++...+++..++.++..|.++...+...
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 643 111222332 356777666666778999999999999987653
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.55 E-value=1.3e+02 Score=35.59 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=121.8
Q ss_pred EEE-EecCCCEEEEE-e-C----CeEEEEECCCCceeee-ecCC-CC------CeeEEEEecCCCcEEEEEe--------
Q 001258 823 CFA-LSKNDSYVMSA-S-G----GKISLFNMMTFKTMAT-FMPP-PP------AATFLAFHPQDNNIIAIGM-------- 879 (1113)
Q Consensus 823 ~l~-~s~~~~~l~~~-s-d----g~i~vwd~~~~~~~~~-~~~~-~~------~i~~l~~s~~d~~~la~g~-------- 879 (1113)
.+. ++|++++++.+ + + ..++++|+.+++.+.. +... .. ....++|.. +..++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcCc
Confidence 344 88999988876 2 2 3599999999877632 2200 00 113457764 444444321
Q ss_pred --cCCcEEEEEcccce--eeeeecccccC-eEEEEEcCCCC-----EEEEEeCC---CcEEEEeCCCCccccccccccCC
Q 001258 880 --DDSSIQIYNVRVDE--VKSKLKGHSKR-ITGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPT 946 (1113)
Q Consensus 880 --~dg~v~iwd~~~~~--~~~~l~~h~~~-V~~l~~s~d~~-----~L~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~ 946 (1113)
....|+.|.+-+.. -...+.+.... -.+...+++++ .+++.+.+ ..+.+.+.+..... ...+..+.
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 12468888876532 22233333233 23455667766 35554433 34555565431111 11111111
Q ss_pred CCCCCCCCCceEEEccCCcEEEEE-----------cCCeEEEEeCCccc-------eeeccccCCCCCCeeEEEECCCCC
Q 001258 947 GRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQ 1008 (1113)
Q Consensus 947 ~~~~~~~~i~~~~~spdg~~l~~~-----------~d~~v~v~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~ 1008 (1113)
-..+..+.++.+++.. ..+.|.+.++.++. ....+........+..+.+..+ .
T Consensus 291 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 291 --------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp --------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred --------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 1223455667666632 35678899988753 1222222233567888999876 5
Q ss_pred EEEEEeCCCc--EEEEecCCCc-eeee-cCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC---CcEEEEecc
Q 001258 1009 LVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1077 (1113)
Q Consensus 1009 ~l~s~~~Dg~--v~vwd~~~~~-~~~~-~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D---g~v~vW~~~ 1077 (1113)
++++...++. ++++++.+++ .... +. ++. .+.+.. ....++.+.++++.++. +.+..+++.
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~--~~~~~~--~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPY--QNAIFG--MSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEECCCEEEC----CCS--TTCEEE--EECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCEEEEEEEECCCCceEEEeccC----CCC--CeEEEE--EeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6777777775 6777776664 2222 22 111 122221 23334344555554433 467777766
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.37 E-value=26 Score=40.90 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=30.7
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258 997 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus 997 ~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
.|.++.+ +..+|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 578999999999999999999998887765
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.27 E-value=1.2e+02 Score=37.54 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=46.6
Q ss_pred ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCC---CCcCeEEECC-CCCEEEEE---ECCCcEEEEEcC
Q 001258 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 648 (1113)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-~~~~l~~~---~~dg~i~iwd~~ 648 (1113)
.+..++..++..++++.+.|+++|+|++.+++++......... .........| .+.++.+- ..+|.+++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 4556677788889999999999999999999999887533211 1112233333 23333332 235667777653
No 367
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.74 E-value=25 Score=36.44 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=19.4
Q ss_pred HHHHHHHhhccCHHHHHHHhccC
Q 001258 38 MKYFEDEVHNGNWDDVEKYLSGF 60 (1113)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~ 60 (1113)
+..|++.|.+|+|-+|...+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 67899999999999998777655
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=59.43 E-value=1.5e+02 Score=29.94 Aligned_cols=197 Identities=5% Similarity=0.023 Sum_probs=105.1
Q ss_pred CccEEE-EecCCCEEEEEeCCeEEE---EECCCCceeeeecCCCCCeeEEEEecC-CCcEEEEEecCCcEEEEEcccce-
Q 001258 820 AVPCFA-LSKNDSYVMSASGGKISL---FNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVDE- 893 (1113)
Q Consensus 820 ~v~~l~-~s~~~~~l~~~sdg~i~v---wd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~la~g~~dg~v~iwd~~~~~- 893 (1113)
.+..+. .+....+++..+.|.++- |++........+. ....|..+.. ++ +..+++..+.+|.++-..+....
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 344443 334444555555777554 4443221111132 3445666644 42 45689999999999999876532
Q ss_pred -----eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc----cc-cccccCCCCCCCCCCCceEEEccC
Q 001258 894 -----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ----KN-RFLQIPTGRTPTAQSDTRVQFHQD 963 (1113)
Q Consensus 894 -----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~----~~-~~~~~~~~~~~~~~~i~~~~~spd 963 (1113)
....++. .+.+..+........|+..+..|.+..+....-... .. ..+....+ ..|..+...++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESS
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCC
Confidence 1222332 345666666666678888899998888876432211 11 11111111 24444444444
Q ss_pred Cc-EEEEEcCCeEEEEeCCccce-------eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEE--EecCCC
Q 001258 964 QI-HFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANL 1027 (1113)
Q Consensus 964 g~-~l~~~~d~~v~v~d~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~v--wd~~~~ 1027 (1113)
+. .++++..|.++...+..... +..+ .-.+.+..+....+...++..+.+|.+.. ++.+.-
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 44 44447888888777643322 1222 11334554444334445666777787777 776543
No 369
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=55.07 E-value=11 Score=29.85 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001258 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1113)
Q Consensus 7 ~v~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1113)
-+.-||-.||.=.||+-|+..|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47789999999999999999999999986
No 370
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=54.34 E-value=2.7e+02 Score=31.26 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCc----------------------------EEEEecCCcceeEeeeeeeeccCCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 408 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 408 (1113)
|-..+....|.-||+.=++..+.+|+ +.|+|-.+|+.+....+.- ..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p-----~r 251 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEP-----AR 251 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSS-----CC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCC-----CC
Confidence 55678888889999866777777776 6788877887776433210 00
Q ss_pred ccccc-ccccCCCc--ceEEEEEcCCCC--eEEEEe---CCCeEEEEEccCCceeeeeeeeeccc-----------CCee
Q 001258 409 MPLQA-ALVKDPGV--SVNRVIWSPDGS--LFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHV-----------GGVN 469 (1113)
Q Consensus 409 ~~~~~-~~~~~h~~--~V~~l~~spdg~--~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~-----------~~V~ 469 (1113)
..... ----++.. ...++++- ||+ .++.+- ....|..||..+++. .....+..-. ....
T Consensus 252 g~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L-~~~W~~d~~~~~~~~~~gqg~h~~~ 329 (591)
T 2zux_A 252 GNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKL-SKLWTLDSSKSGNEAFAGQGNHNLS 329 (591)
T ss_dssp CCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEE-EEEEEEETTSTTCGGGSSCCCSCCE
T ss_pred CcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCce-EEEEEecCCCCCcccccccCCCCCe
Confidence 00000 00000100 01222221 222 233321 123477888877653 2222222211 2344
Q ss_pred EEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCC----cEEEEEcCCCC
Q 001258 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNLG 544 (1113)
Q Consensus 470 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~ 544 (1113)
-..+.-||+. -|+.|+. ++| ..|+.+... .+|...+....|.|+..|..++.+..++ -..+.|..+++
T Consensus 330 vaDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 330 IADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp EECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred eEeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 5556677776 3454542 333 344444333 3687777777777776666777776642 24456777777
Q ss_pred Ceeeee
Q 001258 545 SRVDYE 550 (1113)
Q Consensus 545 ~~~~~~ 550 (1113)
.+....
T Consensus 403 vlw~~~ 408 (591)
T 2zux_A 403 ILWGVY 408 (591)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 665554
No 371
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=53.94 E-value=52 Score=28.45 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcC
Q 001258 14 QFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKH 88 (1113)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~ 88 (1113)
.+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+......+... ....+. + =.=+...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~-l---g~~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKGYIR-K---AACLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH-H---HHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHHHHH-H---HHHHHHCC
Confidence 345555577777777654333222 122233455688888888877653222111 111111 1 11224568
Q ss_pred CHHHHHHHHHhhcccccccChHHHHHHHHHh
Q 001258 89 DRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1113)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1113)
++++|+..+++-+. +.+.+++-...|..+|
T Consensus 96 ~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 EWSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 88888888876644 2233455555555443
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.23 E-value=11 Score=47.96 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=34.9
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCc
Q 001258 996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
..+.+++..++..+|++.+.|+++|||++.+++++.......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 345666777889999999999999999999999988766543
No 373
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.40 E-value=74 Score=33.20 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=18.9
Q ss_pred HHHHHHHhhccCH---HHHHHHhccC
Q 001258 38 MKYFEDEVHNGNW---DDVEKYLSGF 60 (1113)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~~~~~ 60 (1113)
+.+|++.|.+|+| -+|...+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6799999999999 8887766654
No 374
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.99 E-value=84 Score=32.16 Aligned_cols=86 Identities=15% Similarity=0.032 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhhcC-HHHHHHHHHH--hcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHH
Q 001258 5 SRELVFLILQFLDEEK-FKETVHKLEQ--ESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI 76 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~g-~~~s~~~L~~--Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (1113)
.-+.++++.+++...| +.++.+.|++ +.++..+ ...=.-+...|++++|++.+.+ +.+. .+.+.
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~---~~~~~- 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL---ECMAM- 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH---HHHHH-
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH---HHHHH-
Confidence 3456777788887777 7777777776 3333232 1122334567888888888886 1111 12111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc
Q 001258 77 RKQKYLEALDKHDRAKAVEILVKDL 101 (1113)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~l 101 (1113)
.-+. ++..|+.++|+..+++-+
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHHH
Confidence 1111 334677777777776543
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.97 E-value=46 Score=38.16 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=42.6
Q ss_pred CCceEEEccCCcEEEEEcC-------------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258 954 SDTRVQFHQDQIHFLVVHE-------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~~~d-------------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
..-.++|+|+|.++++... ..+.+.+..+++..+.+.. .-..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 3467999999996665321 2466677777776655543 347899999999999988765
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=42.84 E-value=3.4e+02 Score=28.95 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=107.1
Q ss_pred EEEEEeCCeEEEEECCC-Cceeeee--cCCCCCeeEEEEecCCCcEEEEEecCC----cEEEEEcccceeeeeec-----
Q 001258 832 YVMSASGGKISLFNMMT-FKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLK----- 899 (1113)
Q Consensus 832 ~l~~~sdg~i~vwd~~~-~~~~~~~--~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~----- 899 (1113)
.|.+|....+.+++... +..-..+ ......|.++++.|.+...|.++...| .|...+ ..++.-..+.
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccC
Confidence 45556543455555432 2222111 123456999999984444555565555 444332 2222211111
Q ss_pred -c--------cccCeEEEEEcC-C-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCC-------------CCCCCCC
Q 001258 900 -G--------HSKRITGLAFSH-A-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-------------TPTAQSD 955 (1113)
Q Consensus 900 -~--------h~~~V~~l~~s~-d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~i 955 (1113)
. +...|.+|++.| + ...|..++..+.|...+-.. +. .........+ ......+
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG-~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHG-AS--WEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTT-SB--CEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCC-CC--eEECcCccCCccccccccccccCCCCCCce
Confidence 1 113578899986 2 34455555555454443221 11 1111100000 0011246
Q ss_pred ceEEEccC--CcEEEEEcCCeEEEEeCCccceeeccccC---CC--------CCCeeEEEECCC-CCEEEEEeCCCcEEE
Q 001258 956 TRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPR---ES--------SAPITHATFSCD-SQLVYACFLDATVCV 1021 (1113)
Q Consensus 956 ~~~~~spd--g~~l~~~~d~~v~v~d~~~~~~~~~~~~~---~h--------~~~v~~l~~s~d-g~~l~s~~~Dg~v~v 1021 (1113)
..+.++|. +..++...++.|...+ +.++.-..+... .+ ...+.++++.|+ ...|+++...+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 78888873 3333334455444332 222221111100 00 135889999986 35666666444 444
Q ss_pred EecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC-----------CCcEEEEeccCCCccccC
Q 001258 1022 FSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS-----------DGGVHVFEPLESEGKWGV 1085 (1113)
Q Consensus 1022 wd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~-----------Dg~v~vW~~~~~~~~~~~ 1085 (1113)
.+ +.++.-..+. ..++.+....+ ..+++.|.++..|..+.. ++...+|.-.++..+|..
T Consensus 258 s~-D~G~tW~~~~--~~l~~~~~~~~--~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~ 327 (394)
T 3b7f_A 258 MD-RREGVWKRIG--DAMPREVGDIG--FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQR 327 (394)
T ss_dssp EE-TTTTEEECGG--GGSCTTTCSCE--EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEE
T ss_pred eC-CCCCcceECC--CCCCCCCccce--EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceE
Confidence 43 2343333332 11121100112 246676655555554432 344566766665455653
No 377
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=41.46 E-value=87 Score=26.93 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=51.8
Q ss_pred HHhhcCHHHHHHHHHHhcCCCcc-H----HHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHHHHHHhcC
Q 001258 15 FLDEEKFKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDKH 88 (1113)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~lell~~~ 88 (1113)
+.+..-|.++...+++=-.+..+ . ..=.-....|+|++|++.+...... +........+-.++...=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44445578888777654333332 1 1222346679999999888765221 1111000011112221112234578
Q ss_pred CHHHHHHHHHhhcccccccChHHHHHHHH
Q 001258 89 DRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1113)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1113)
++.+|+..+++-|.-. .+++....|..
T Consensus 98 ~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp CHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 8999999888766522 25555555443
No 378
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=41.44 E-value=1.2e+02 Score=34.05 Aligned_cols=74 Identities=8% Similarity=-0.015 Sum_probs=33.6
Q ss_pred HHHHHHHHH--HhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHH
Q 001258 21 FKETVHKLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 94 (1113)
Q Consensus 21 ~~~s~~~L~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~ 94 (1113)
+.++.+.|+ ++.|+..+ ...+.-+...|++++|++++..+....-. +....|...-.-|. ..|+.++|+
T Consensus 121 ~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~ty~~Li~~~~---~~g~~d~A~ 195 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEPELAALLKVSM---DTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHH---HTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHh---hCCCHHHHH
Confidence 444444443 24455555 23444445556666666666655322110 11133333333332 256666666
Q ss_pred HHHHh
Q 001258 95 EILVK 99 (1113)
Q Consensus 95 ~~l~~ 99 (1113)
.+|++
T Consensus 196 ~ll~~ 200 (501)
T 4g26_A 196 KTLQR 200 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.87 E-value=1.1e+02 Score=38.85 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC
Q 001258 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1113)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1113)
.+..++..++..++++.+.|+++|+|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4445566778889999999999999999999999887543
No 380
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=38.54 E-value=1.7e+02 Score=24.41 Aligned_cols=90 Identities=8% Similarity=-0.040 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001258 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1113)
Q Consensus 7 ~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (1113)
....+...++...-|.++...+++=.....+ ...-.-....|+|++|+.++.......... ..+.+.+ -..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-a~~- 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK-AAA- 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH-HHH-
Confidence 3445555566666688888888776554433 222233466799999998888763322111 1122222 112
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 001258 82 LEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 82 lell~~~~~~~a~~~l~~~l~ 102 (1113)
+...++..+|+..+++-+.
T Consensus 94 --~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 --LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 2457889999988886644
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.50 E-value=76 Score=35.92 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCceEEEccCCcEEEEEc-------------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258 954 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus 954 ~i~~~~~spdg~~l~~~~-------------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
....++|+++|.+.++.. ...+..++..+++....+. ......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence 457899999998777432 1257777777787655443 12246799999999999987764
No 382
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=37.23 E-value=1.1e+02 Score=27.12 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 001258 21 FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 95 (1113)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~ 95 (1113)
+.++...+++-.....+ ...=+-+...|+|++|++++.+......+. ..+.+. +=.. +...++.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~-lg~~---~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRF-LGLL---YELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHH---HHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH-HHHH---HHHcCchHHHHH
Confidence 45555666655443332 122234567899999999998863332111 112222 2222 235799999999
Q ss_pred HHHhhcccccccChHHHHHHHHHhcc
Q 001258 96 ILVKDLKVFSTFNEELFKEITQLLTL 121 (1113)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1113)
.+++.+. +...+++-+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9997755 333466777788776643
No 383
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.58 E-value=2e+02 Score=29.29 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=6.8
Q ss_pred ccCHHHHHHHhccC
Q 001258 47 NGNWDDVEKYLSGF 60 (1113)
Q Consensus 47 ~g~w~~~~~~~~~~ 60 (1113)
.|++++|++.+..+
T Consensus 78 ~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 78 HSRRDAIVAELDRE 91 (291)
T ss_dssp STTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 34455555555443
No 384
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.69 E-value=4.1e+02 Score=27.53 Aligned_cols=203 Identities=8% Similarity=0.029 Sum_probs=99.8
Q ss_pred CCCccEEEEe-cCCCEEEEEeCCeEEEEEC---CC------Cceeee-ecC-CCCCeeEEEEecC--CCcEEEEEecCCc
Q 001258 818 EEAVPCFALS-KNDSYVMSASGGKISLFNM---MT------FKTMAT-FMP-PPPAATFLAFHPQ--DNNIIAIGMDDSS 883 (1113)
Q Consensus 818 ~~~v~~l~~s-~~~~~l~~~sdg~i~vwd~---~~------~~~~~~-~~~-~~~~i~~l~~s~~--d~~~la~g~~dg~ 883 (1113)
...+..+... .....++..+.|.+.-+.. .. |..+.. +.- ....|.++..-++ ++.+++..+.+|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3344444444 4444444455787555543 22 221111 111 2234555443331 2567888999999
Q ss_pred EEEEEcccc--------eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-----ccccccCCCCCC
Q 001258 884 IQIYNVRVD--------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRTP 950 (1113)
Q Consensus 884 v~iwd~~~~--------~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~ 950 (1113)
++.-.+... .....+..- +.+..+....+...|+..+.+|.+..+....-.... ...+....+
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~--- 193 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG--- 193 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT---
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC---
Confidence 999987532 222233322 566666665556678888899988888765421110 111122111
Q ss_pred CCCCCceEEEccCCc--EEEEEcCCeEEEEeCCccc-------eeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258 951 TAQSDTRVQFHQDQI--HFLVVHETQLAIFETTKLE-------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus 951 ~~~~i~~~~~spdg~--~l~~~~d~~v~v~d~~~~~-------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
..|..+..-+++. .++++..|..+..++.... -+..+. .......+..+....++..++..+.+|.+.
T Consensus 194 --d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 194 --DYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp --CCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred --CEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 2344554333333 4445777777776664321 111111 111122444333333344455666677766
Q ss_pred EEecCC
Q 001258 1021 VFSAAN 1026 (1113)
Q Consensus 1021 vwd~~~ 1026 (1113)
...+..
T Consensus 272 r~~~~~ 277 (323)
T 1wp5_A 272 TIKVGD 277 (323)
T ss_dssp EEEGGG
T ss_pred EEEhhh
Confidence 666544
No 385
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=34.03 E-value=2e+02 Score=23.83 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=51.1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHHH
Q 001258 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1113)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l 82 (1113)
..+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++...... +...........++...-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34444555555678877777654333222 22333445689999999998876322 1111000011122222222
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001258 83 EALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 83 ell~~~~~~~a~~~l~~~l~ 102 (1113)
-+...++..+|+..+++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23567999999999986654
No 386
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.28 E-value=4.1e+02 Score=27.20 Aligned_cols=236 Identities=9% Similarity=0.044 Sum_probs=121.4
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceee---------eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-------
Q 001258 829 NDSYVMSAS-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------- 891 (1113)
Q Consensus 829 ~~~~l~~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~------- 891 (1113)
+..++++.+ +|.|+--.+.+.+..+ .+.. ...+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 7888877765433221 1222 22344444444 455677778889877766532
Q ss_pred --ceeee---eecccccCeEEEEEc---CCCCEEEEEeCCCcEEEEeCCCCccccc---cccccCCCCCCCCCCCceEEE
Q 001258 892 --DEVKS---KLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQF 960 (1113)
Q Consensus 892 --~~~~~---~l~~h~~~V~~l~~s---~d~~~L~s~s~D~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 960 (1113)
|..+. .+. ....|.++..- .++.+++.++.+|.++.-.+........ ..+....+ ..+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 23456666442 3567899999999999998764322211 11222221 23334333
Q ss_pred -ccCCcEEEEEcCCeEEEEeCCcccee-------eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeee
Q 001258 961 -HQDQIHFLVVHETQLAIFETTKLECV-------KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1032 (1113)
Q Consensus 961 -spdg~~l~~~~d~~v~v~d~~~~~~~-------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~ 1032 (1113)
..+...++.+.+|.+..+....-... ..+... -...|.++....++..|++.+..|.++-.++.......+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 34445555588888888776432221 111221 245677776666667788889999999888754322211
Q ss_pred c----CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258 1033 I----NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus 1033 ~----~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
- .... +. .-.+.+-. +.... +...++..+.+|.+.-.++..
T Consensus 233 g~kG~~~~~-~~-~~~~~lv~--~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIK-VT-ERNGLVVG--AVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSC-CC-TTTCSEEE--EEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeE-ec-CCCCeEEE--EEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 0 0000 00 01122221 22222 335566677788777666554
No 387
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=33.26 E-value=4.3e+02 Score=27.36 Aligned_cols=190 Identities=8% Similarity=0.073 Sum_probs=104.8
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---------ce
Q 001258 828 KNDSYVMSAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DE 893 (1113)
Q Consensus 828 ~~~~~l~~~s-dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---------~~ 893 (1113)
|+..++++.+ +|.|+--.+...+ .-..+... ..+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3455666666 7888877654221 11123322 3344444444 456677788899877776532 22
Q ss_pred eeee---ecccccCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccc----ccccccCCCCCCCCCCCceEEE-cc
Q 001258 894 VKSK---LKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQK----NRFLQIPTGRTPTAQSDTRVQF-HQ 962 (1113)
Q Consensus 894 ~~~~---l~~h~~~V~~l~~s~---d~~~L~s~s~D~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~-sp 962 (1113)
.+.. +. ....|.++...+ ++.+|+.++.+|.++...+....... ...+....+ ..+..+.. ..
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 223466554333 26789999999999999876433221 111122222 23334433 34
Q ss_pred CCcEEEEEcCCeEEEEeCCccce-------eeccccCCCCCCeeEEEECCCCC-EEEEEeCCCcEEEEecCC
Q 001258 963 DQIHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 963 dg~~l~~~~d~~v~v~d~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~vwd~~~ 1026 (1113)
+...++.+.+|.+..+....-.. +..+.... ...|.++..-+++. .|++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 44555558889888887653221 12222211 44566665544455 788888899988887754
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=33.25 E-value=4.6e+02 Score=27.75 Aligned_cols=256 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1113)
Q Consensus 364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1113)
+.+-|+... +++.+.+|.|+=-.+..-+.... ...-...+-....+.+..+........|+..+..|.
T Consensus 1 ~dlI~~e~~-~v~lT~~GyIKr~~l~~y~~~~r-----------~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~ 68 (370)
T 3l6v_A 1 MDLIAPEDV-VVTLSHAGYAKRQPVSAYRAQRR-----------GGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGK 68 (370)
T ss_dssp CCCCCCCCE-EEEEESSCEEEEEEHHHHHHTCC-----------CCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSE
T ss_pred CCcccCCCE-EEEEeCCCEEEEeeHHHhhhhcc-----------CCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCe
Q ss_pred EEEEE---------ccCCceeeeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeC-------CCCceeeEe
Q 001258 444 VQIYS---------YHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDA-------TNGAKQYIF 505 (1113)
Q Consensus 444 i~iwd---------~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~-------~~~~~~~~~ 505 (1113)
+.-+. ...|..+.....+.....-+..+.+.. ++. +++.++..|.++...+ ..|.....+
T Consensus 69 ~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~--~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L 146 (370)
T 3l6v_A 69 VFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNR--YVFMATRNGTVKKTPLSEFAFRLARGKIAINL 146 (370)
T ss_dssp EEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGCSCCTTCEESSCC
T ss_pred EEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCc--EEEEEeCCCeEEEeEHHHhhcccCCceEEEEe
Q ss_pred eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC-
Q 001258 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT- 584 (1113)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~- 584 (1113)
.. .+.+..+...... ..++..+.+|.+..+.... |..+.-...|.+.+.-..+..+..+...+
T Consensus 147 ~~-~d~lv~v~~~~~~--~~i~l~T~~G~~irf~~~~-------------v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~ 210 (370)
T 3l6v_A 147 DE-GDALVGVALTDGD--RDVLLFASNGKTVRFGEST-------------VRSMGRTATGVRGIRLAKGEEVVSLIVSER 210 (370)
T ss_dssp CT-TCCEEEEEEECSC--CEEEEEETTSEEEEEEGGG-------------SCBCCTTCCCEECCCCCTTCCEEEEEEECC
T ss_pred CC-CCEEEEEEEeCCC--ceEEEEeCCCeEEEEEccc-------------cCccCCCCCCeeeEEeCCCCEEEEEEEecc
Q ss_pred ----------------------------------CCCEEEEEecCCcEEEEEC-------CCCceEEEEccCCCCCCcCe
Q 001258 585 ----------------------------------TKNRFLAAGDDFSIKFWDM-------DSVQLLTSIDADGGLPASPR 623 (1113)
Q Consensus 585 ----------------------------------~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~~~~~~~~~v~~ 623 (1113)
.+..+++.+..|..+...+ +.++-+..+........+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~ 290 (370)
T 3l6v_A 211 AGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVR 290 (370)
T ss_dssp C-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEE
Q ss_pred EEECCCCCEEEEEECCCcEEEEEcCC
Q 001258 624 IRFNKDGCLLAVSTNDNGIKILATSD 649 (1113)
Q Consensus 624 ~~~s~~~~~l~~~~~dg~i~iwd~~~ 649 (1113)
+.+..+...++..+..|.+.-..+..
T Consensus 291 ~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 291 AVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp EEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred EEEeCCCceEEEEcCCCeEEEeeHhh
No 389
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.82 E-value=1.8e+02 Score=29.40 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHH
Q 001258 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1113)
Q Consensus 10 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lel 84 (1113)
.+-..++....+.++...|++=.....+ ...-+-++..|++++|+..+.++.....+. ....-..-+++
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l 195 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHH
Confidence 3334445555577776666654333332 333445567899999999988874332211 11122233445
Q ss_pred HhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhc
Q 001258 85 LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1113)
Q Consensus 85 l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~ 120 (1113)
+..++..+|+..|++.+.-- ..+++-...|..++.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLH 230 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 55666677777777554422 234555555655543
No 390
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=31.55 E-value=4.6e+02 Score=27.19 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=90.1
Q ss_pred CCeeEEEEecC--CCcEEEEEecCCcEEEEEcccce-------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 860 PAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDE-------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 860 ~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~~~-------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
..|.++..-++ +..+++..+.+|.++--.+.... ....++. .+.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 44655544331 36789999999999998876532 2223333 34566665555667788888999888887
Q ss_pred CC--CCccc----ccc-ccccCCCCCCCCCCCceEEEccCCcEEE-EEcCCeEEEEeCCccce-------eeccccCCCC
Q 001258 931 SD--GWEKQ----KNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAIFETTKLEC-------VKQWVPRESS 995 (1113)
Q Consensus 931 ~~--~~~~~----~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~-~~~d~~v~v~d~~~~~~-------~~~~~~~~h~ 995 (1113)
+. .-... ... .+....+ ..|..+...+++.+++ ++..|.++.-.+..... +..+....-.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~ 248 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR 248 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred CcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence 76 21111 111 1111111 2455554444444444 47888888776543322 1222211112
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258 996 APITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
..+..+....+...++..+.+|.+.-++...-
T Consensus 249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 249 GRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp CSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred CeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 34555444444556666777888777776543
No 391
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=31.49 E-value=57 Score=28.65 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=50.1
Q ss_pred CcchHHHHHHHHHHHhhcCHH-HHHHHHHHhcCCCccHHHHHHHhhccCHHHHHHHhccCccc--cCcccchhhHHHHHH
Q 001258 2 SSLSRELVFLILQFLDEEKFK-ETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKV--DDNRYSMKIFFEIRK 78 (1113)
Q Consensus 2 ~~~~~~v~~li~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 78 (1113)
+....++...|+..|.+.||- .+...+.++.|+..+ .+..|++.+..|... ....+..-++.-|.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 344567888999999999984 556666666665542 334455556655333 122222222222221
Q ss_pred ---------HHHHH-HHhcCCH-HHHHHHHHhhcccc
Q 001258 79 ---------QKYLE-ALDKHDR-AKAVEILVKDLKVF 104 (1113)
Q Consensus 79 ---------~~~le-ll~~~~~-~~a~~~l~~~l~~~ 104 (1113)
..+|| +|.++++ .+|+.+++ .|.|.
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 24566 7766664 44666665 55543
No 392
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=31.41 E-value=5e+02 Score=27.59 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=40.4
Q ss_pred eEEEEEccCC--ceeeeeeeeec----ccCCeeEEEEc---CC---CCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258 443 IVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1113)
Q Consensus 443 ~i~iwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 505 (1113)
.|.+||+.++ +.++.. .|.. ....+..+++. ++ +.....++-+...-|.|+|+.+++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5778888888 766533 2321 23467888887 22 13324556566788999999998876655
No 393
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=30.10 E-value=2.2e+02 Score=28.79 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---H----H----HHHHHhhccCHHHHHHHhccC-ccccCcccchhhHH
Q 001258 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---M----K----YFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFF 74 (1113)
Q Consensus 7 ~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~----~----~~~~~i~~g~w~~~~~~~~~~-~~~~~~~~~~~~~~ 74 (1113)
++...+..++....|.++...+++.-..... . . .-.-....|++++|+.++.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4456677778888899998887755433221 0 0 111235568999999987654 2211111111 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001258 75 EIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 75 ~l~~~~~lell~~~~~~~a~~~l~~~l~ 102 (1113)
.++...-.-+...+++++|+..+++.+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555678999999999987763
No 394
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=29.43 E-value=2.2e+02 Score=22.87 Aligned_cols=89 Identities=8% Similarity=-0.082 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHH
Q 001258 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1113)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 82 (1113)
...+...++....|.++...+++=-....+ ...-.-....|+|++|+.++.......... ..+.+.+- .
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a----~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA----A 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----H
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH----H
Confidence 445555666666688887777654332222 222233456789999988887763222111 11222111 1
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001258 83 EALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 83 ell~~~~~~~a~~~l~~~l~ 102 (1113)
-+...++..+|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 12356888889888876544
No 395
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=28.44 E-value=1.8e+02 Score=31.76 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc-----c---H-----HHHHHHhhccCHHHHHHHhccCc-----cccCcc
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF-----N---M-----KYFEDEVHNGNWDDVEKYLSGFT-----KVDDNR 67 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~-----~---~-----~~~~~~i~~g~w~~~~~~~~~~~-----~~~~~~ 67 (1113)
+++++.|.++-.+.-|.++...+++=-.+.. + + ....-+...|+|++|+.+..+.. .++.+-
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 4667777666666667777776655443322 1 1 22333456899999999988651 112111
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccc
Q 001258 68 YSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVF 104 (1113)
Q Consensus 68 ~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~ 104 (1113)
+ .+...++..--+ +..+|++++|+.++++.+.-+
T Consensus 368 -p-~~a~~l~nLa~~-~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 368 -P-VRGVQVMKVGKL-QLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp -H-HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred -h-HHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 1 122333222222 244789999999888776654
No 396
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=28.03 E-value=35 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 001258 1 MSSLSRELVFLILQFLDEE 19 (1113)
Q Consensus 1 ~~~~~~~v~~li~q~L~~~ 19 (1113)
|+..++++...|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999874
No 397
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=27.51 E-value=9.5 Score=32.05 Aligned_cols=35 Identities=9% Similarity=0.206 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCccHHHHHHHhhccCHHHHHHHhccC
Q 001258 25 VHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60 (1113)
Q Consensus 25 ~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~~~~~ 60 (1113)
+..+-+|||+++++.-+...| +|+||++.+.++++
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 344456899999877777776 49999999988875
No 398
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=27.27 E-value=3e+02 Score=26.11 Aligned_cols=107 Identities=9% Similarity=0.011 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHH
Q 001258 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKY 81 (1113)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 81 (1113)
...+-..++...-|.++...+++-.....+ ...=.-....|++++|+..+.+.... +.+. ...+.+ -..|
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~l-g~~~ 83 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL---GGYMVL-SEAY 83 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH-HHHH
Confidence 444555566666688998888887666554 22223446689999999999876322 2221 122222 2222
Q ss_pred HHH--------HhcCCHHHHHHHHHhhcccccccChHHHHHHHHHh
Q 001258 82 LEA--------LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1113)
Q Consensus 82 lel--------l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1113)
+.+ +..|+..+|+..+++-+.- ...++.-+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 221 1127888899888866442 222444444454443
No 399
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.26 E-value=35 Score=19.66 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhhc
Q 001258 5 SRELVFLILQFLDEE 19 (1113)
Q Consensus 5 ~~~v~~li~q~L~~~ 19 (1113)
-+||++||-||-...
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 368888888886543
No 400
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.21 E-value=1.6e+02 Score=33.40 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCeeEEEEecCCCcEEEEEec------------CCcEEEEEcccceeeeeeccc-ccCeEEEEEcCCCCEEEEEe
Q 001258 860 PAATFLAFHPQDNNIIAIGMD------------DSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSG 921 (1113)
Q Consensus 860 ~~i~~l~~s~~d~~~la~g~~------------dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~L~s~s 921 (1113)
.....|+|++ +|.+.+.... ...|..++..++++...+.+. ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3467799999 7777663321 125667776677766666543 35789999999999888663
No 401
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.07 E-value=2.9e+02 Score=27.00 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHH
Q 001258 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1113)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 83 (1113)
+++-.-++....|.++...+++=-....+ ...-.-....|+|++|+.++......+.+. ......+...-.-
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHHHHHH
Confidence 34444445555578888777664333322 333345667899999998888763332111 1211112222222
Q ss_pred HHhcCCHHHHHHHHHhhcccccccChHHHHHHHHH
Q 001258 84 ALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1113)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1113)
+...++..+|+..+++-+.-- ..+..-+..+..+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSY 117 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 344677888888777654421 2233444444443
No 402
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.01 E-value=34 Score=27.14 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1113)
.++.+-|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 367788889999999 899999999998764
No 403
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=26.92 E-value=2e+02 Score=25.71 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=44.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHH
Q 001258 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1113)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell 85 (1113)
+-..++...-|.++...+++=..+..+ ...=.-+...|+|++|+..+.......... ....|.+ -.. +.
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l-g~~---~~ 90 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRL-GLA---RF 90 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHH-HHH---HH
Confidence 334445555577777766654333332 222233456788888888877653322111 1122211 111 23
Q ss_pred hcCCHHHHHHHHHhhc
Q 001258 86 DKHDRAKAVEILVKDL 101 (1113)
Q Consensus 86 ~~~~~~~a~~~l~~~l 101 (1113)
..+++.+|+..+++-+
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4678888887777543
No 404
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=26.89 E-value=1.9e+02 Score=24.17 Aligned_cols=90 Identities=9% Similarity=0.051 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc--------HHHHHHHhhccCHHHHHHHhccCcc-ccCcccchhhHHHHHHH
Q 001258 9 VFLILQFLDEEKFKETVHKLEQESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFTK-VDDNRYSMKIFFEIRKQ 79 (1113)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 79 (1113)
..+-..++....|.++...+++=.....+ ...=.-....|+|++|+.++..... .+.........|.+-.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~- 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL- 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-
Confidence 44555666677788888877653221111 1222345678999999999887632 2322211122332211
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 001258 80 KYLEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~l~ 102 (1113)
. +...|+.++|+..+++-+.
T Consensus 85 ~---~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 S---QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp H---HHHTTCHHHHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHHHHH
Confidence 1 2357899999998886644
No 405
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.89 E-value=2.4e+02 Score=26.93 Aligned_cols=101 Identities=10% Similarity=0.134 Sum_probs=59.5
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHH-HHHHHHhcccccccchhhccCCCChhHHHHHHHH
Q 001258 68 YSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELF-KEITQLLTLENFRENEQLSKYGDTKSARSIMLVE 146 (1113)
Q Consensus 68 ~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 146 (1113)
+...+.-+|.+|-.+=-+++|++.+|..+|.+.+..-. .+..+ ..|..++.+++. .+....++ ++..--+++...
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~-~H~~lqnF-Sy~~~~~ki~~f 183 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNL-AHPVIQNF-SYETFQQKMLRF 183 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCT-TSHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCc-ccHHHHhc-cHHHHHHHHHHH
Confidence 34458889999999999999999999999998877421 23333 356666665543 33434333 222223445555
Q ss_pred HHhhccCCCCcccccCCCCCchhHHHHHHHHHHHHHHhhCCC
Q 001258 147 LKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKN 188 (1113)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~ 188 (1113)
++..+.. ++. .||+.|.+-+.++|.+
T Consensus 184 ve~~~~~-------------a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 184 LESHLDD-------------AEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHTTSCC-------------CCC---HHHHHHHHHTTTC---
T ss_pred HHHHhcc-------------cch---HHHHHHHHHHhhcccc
Confidence 5555432 122 5666676666665543
No 406
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.75 E-value=2.3e+02 Score=23.68 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHH
Q 001258 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1113)
Q Consensus 10 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lel 84 (1113)
.+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+.......... ....+.+ - .=+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l-g---~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRK-A---TAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-H---HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHH-H---HHH
Confidence 3344455666688888877665433332 223333456799999999888763332111 1122221 1 122
Q ss_pred HhcCCHHHHHHHHHhhcc
Q 001258 85 LDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 85 l~~~~~~~a~~~l~~~l~ 102 (1113)
...|++.+|+..+++-+.
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 446889999888886543
No 407
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=24.43 E-value=5.9e+02 Score=26.10 Aligned_cols=203 Identities=14% Similarity=0.095 Sum_probs=114.8
Q ss_pred CCCcceeeccCCCceeeEeccCCCCCCc----ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCC
Q 001258 712 ADVKPRITEESNDKSKVWKLTELSEPNQ----CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787 (1113)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 787 (1113)
++...+++.+.+|.|+--.+........ ...+.+. ....+..+........++..+..|.++-+....- +
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i---p 79 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI---K 79 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS---C
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC---C
Confidence 3566788889999999887766543221 1111111 3345666666666667888888888776554310 0
Q ss_pred CCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec---CCCEEEEEe-CCeEEEEECCCCc-------eeeeec
Q 001258 788 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFK-------TMATFM 856 (1113)
Q Consensus 788 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s-dg~i~vwd~~~~~-------~~~~~~ 856 (1113)
.... ...|..+...+.- .....|.++...+ +..+++..+ .|.++...+.... ....+.
T Consensus 80 ~~~r----------~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 80 DSSR----------ASKGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp C-----------------CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred CCCc----------cCCCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 0000 0112221111111 1334455554332 345565555 8998888875332 222233
Q ss_pred CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 001258 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927 (1113)
Q Consensus 857 ~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~ 927 (1113)
. ...+..+.... +...++..+.+|.+..+.... |.....+.. .+.|.++....++..|++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceE
Confidence 3 44566665554 556788899999999998754 112222332 45667776666667788899999999
Q ss_pred EEeCCCC
Q 001258 928 VWSSDGW 934 (1113)
Q Consensus 928 iwd~~~~ 934 (1113)
..++...
T Consensus 226 r~~~~e~ 232 (312)
T 1suu_A 226 RLNMSKI 232 (312)
T ss_dssp EEEGGGS
T ss_pred EEEHHHh
Confidence 9988653
No 408
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=24.15 E-value=3.6e+02 Score=23.57 Aligned_cols=83 Identities=10% Similarity=-0.030 Sum_probs=39.2
Q ss_pred HHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHHHHHH
Q 001258 12 ILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEAL 85 (1113)
Q Consensus 12 i~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~lell 85 (1113)
-..++...-|.++...+++=..+..+ ...=.-....|+|++|+..+...... +.+. ...|.+ =. =++
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l-g~---~~~ 100 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHA-AE---CLL 100 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHH-HH---HHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHH-HH---HHH
Confidence 33344444466666666543222222 11112334567777777777665222 2111 122221 11 123
Q ss_pred hcCCHHHHHHHHHhhc
Q 001258 86 DKHDRAKAVEILVKDL 101 (1113)
Q Consensus 86 ~~~~~~~a~~~l~~~l 101 (1113)
..|+..+|+..+++-+
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4677777777776543
No 409
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=24.04 E-value=6e+02 Score=26.04 Aligned_cols=199 Identities=11% Similarity=0.123 Sum_probs=102.7
Q ss_pred CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CC
Q 001258 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 839 (1113)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg 839 (1113)
++...++..+.+|.++--.+..-.....+ ..| .....+. ....+..+........++..+ .|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-------------~~g-~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G 68 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG-------------GKG-LSSFDLN---DGDEIVIALCVNTHDYLFMISNEG 68 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS-------------CCC-EECCCCC---TTCCEEEEEEEETTCEEEEEETTS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC-------------CCC-ceecccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 45566888899999886554321100000 001 0010111 233444444444444444444 78
Q ss_pred eEEEEECCC---------Cce---eeeecCCCCCeeEEEEecC--CCcEEEEEecCCcEEEEEccc-------ceeeeee
Q 001258 840 KISLFNMMT---------FKT---MATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-------DEVKSKL 898 (1113)
Q Consensus 840 ~i~vwd~~~---------~~~---~~~~~~~~~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-------~~~~~~l 898 (1113)
.++-+.... |.. ...+.. ...|.++...++ +..+|+..+.+|.++...+.. |.....+
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L 147 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL 147 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec
Confidence 876665532 111 111222 234555543321 356788889999999988754 2222334
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc----c-ccccccCCCCCCCCCCCceEEEccCCc-EEEEEcC
Q 001258 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ----K-NRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLVVHE 972 (1113)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~----~-~~~~~~~~~~~~~~~~i~~~~~spdg~-~l~~~~d 972 (1113)
.. .+.+..+....+...++..+.+|.+..+.+..-... . ...+....+ ..+..+..-.++. .++++..
T Consensus 148 ~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECC
Confidence 43 456766666655678888999999999887652111 1 111222211 2444554444444 4444788
Q ss_pred CeEEEEeCCcc
Q 001258 973 TQLAIFETTKL 983 (1113)
Q Consensus 973 ~~v~v~d~~~~ 983 (1113)
|......+...
T Consensus 222 G~~kr~~~~e~ 232 (312)
T 1suu_A 222 GYGKRLNMSKI 232 (312)
T ss_dssp SEEEEEEGGGS
T ss_pred CceEEEEHHHh
Confidence 88888877543
No 410
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.32 E-value=3.6e+02 Score=30.10 Aligned_cols=92 Identities=9% Similarity=-0.052 Sum_probs=58.3
Q ss_pred HHHHHHHHH--HhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHH
Q 001258 21 FKETVHKLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 94 (1113)
Q Consensus 21 ~~~s~~~L~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~ 94 (1113)
+.++.+.|+ .+.|+..+ -..+.-+...|++++|++++..+....-. +....|...-.-|. ..|+.++|+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~---~~g~~~~A~ 160 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFC---RKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHH---HTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHH---HCCCHHHHH
Confidence 455555554 47799888 45677788999999999999988443211 11255555555544 479999999
Q ss_pred HHHHhhcccccccChHHHHHHHH
Q 001258 95 EILVKDLKVFSTFNEELFKEITQ 117 (1113)
Q Consensus 95 ~~l~~~l~~~~~~~~~~~~~l~~ 117 (1113)
.++.+....=-..+...|..|-.
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Confidence 99885533211224444544443
No 411
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=23.20 E-value=3.1e+02 Score=25.83 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-H----H----------------HHHHHhhccCHHHHHHHhccCcccc
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN-M----K----------------YFEDEVHNGNWDDVEKYLSGFTKVD 64 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~----------------~~~~~i~~g~w~~~~~~~~~~~~~~ 64 (1113)
++++..-..++....|.++...+++=..+..+ . . .=.-....|++++|+..+.+.....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45666667777777799998888765443332 1 1 2233467899999999998763332
Q ss_pred CcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHh
Q 001258 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1113)
Q Consensus 65 ~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1113)
.+. ....+.+ =.. ++..|+..+|+..+++-+. +.+.+++-+..|..++
T Consensus 85 p~~--~~~~~~l-g~~---~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNN--VDCLEAC-AEM---QVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYY 132 (208)
T ss_dssp TTC--HHHHHHH-HHH---HHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred CCC--HHHHHHH-HHH---HHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 111 1122222 122 2456999999999987654 2233555555555543
No 412
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=22.94 E-value=8.6e+02 Score=27.51 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=94.7
Q ss_pred CCCCcEEEEEcCCCCeEEEEEecCCc----------------------------EEEEecCCcceeEeeeeeeeccCCCC
Q 001258 357 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 408 (1113)
Q Consensus 357 h~~~V~~~~~spdg~~ll~~gs~dg~----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 408 (1113)
|-..+....|.-||+.=+++.+.+|+ +.|+|-.+|+.+...++.-..
T Consensus 181 hyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~r----- 255 (620)
T 2zuy_A 181 HYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPR----- 255 (620)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCC-----
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCcceeeecccCCCc-----
Confidence 66788888889999866777777766 478888888776643321000
Q ss_pred ccccc-ccccCCCcc--eEEEEEcCCCC--eEEEEe---CCCeEEEEEccCCceeeeeeeeeccc-----------CCee
Q 001258 409 MPLQA-ALVKDPGVS--VNRVIWSPDGS--LFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHV-----------GGVN 469 (1113)
Q Consensus 409 ~~~~~-~~~~~h~~~--V~~l~~spdg~--~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~-----------~~V~ 469 (1113)
..... --.-++... ..++++- ||+ .++.+- ....|..||..+++. .....+..-. ..+.
T Consensus 256 g~~~~WGD~yGnR~drf~~~vayL-DG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L-~~~W~~ds~~~~~~~~~gqg~H~~s 333 (620)
T 2zuy_A 256 GKLEDWGDGYGNRMDRFLAGTAYL-DGERPSLVMARGYYTRTVLVAYDFRNGRL-KKRWVFDSNQPGHEAYAGQGNHSLS 333 (620)
T ss_dssp CSGGGGTSSSSTTTTCEEEEEECT-TCC-CEEEEEECSSSSCEEEEEEEETTEE-EEEEEEETTSTTCGGGTTCCCSSCE
T ss_pred CccccccccccccccccceeEEec-CCCCceEEEecCcccceeEEEEEccCCce-eeeeEecCCCCcccccccccCcCce
Confidence 00000 000111101 2223332 222 222221 124566777776642 2222222200 1344
Q ss_pred EEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCC----cEEEEEcCCCC
Q 001258 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNLG 544 (1113)
Q Consensus 470 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~ 544 (1113)
...+.-||+. -|+.|+ .++| ..|+.+... .+|...+.--.|.|+..|..++.+..++ -..+.|..+++
T Consensus 334 vaDVDGDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~ 406 (620)
T 2zuy_A 334 VADVDGDGKD-EIIYGA-----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGE 406 (620)
T ss_dssp EECCSSSSSC-EEEETT-----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred EEecCCCCce-eEEEee-----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCc
Confidence 4455677776 455554 2444 445544433 2687777666777777777777776542 45677887777
Q ss_pred CeeeeeC
Q 001258 545 SRVDYEA 551 (1113)
Q Consensus 545 ~~~~~~~ 551 (1113)
.+.....
T Consensus 407 vlw~~~~ 413 (620)
T 2zuy_A 407 ILWGVHA 413 (620)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 7665543
No 413
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=22.91 E-value=1.6e+02 Score=33.67 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=28.7
Q ss_pred cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258 597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1113)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 636 (1113)
.+.+.+..+++....+..+.+ .+++.++|+||++.|++.
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 456667777777766665543 578999999999887764
No 414
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=22.05 E-value=3.2e+02 Score=22.12 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=45.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHH
Q 001258 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1113)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell 85 (1113)
+..-++...-|.++...+++=.....+ ...-.-....|++++|+.++.......... ....+.+ -.. +.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-a~~---~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL-GNA---YY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH-HHH---HH
Confidence 334445555577777766553322221 223344466799999988887763222111 1122221 111 23
Q ss_pred hcCCHHHHHHHHHhhcc
Q 001258 86 DKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 86 ~~~~~~~a~~~l~~~l~ 102 (1113)
..++..+|+..+++-+.
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56888889888876543
No 415
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.98 E-value=99 Score=36.07 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=28.6
Q ss_pred eeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1113)
Q Consensus 468 V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 507 (1113)
|.++.+ +.. ++++-+.|+++|+||+.+++++.+..-
T Consensus 224 Is~~~~--~~~--fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HER--YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTT--EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCc--EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555554 355 799999999999999999998877653
No 416
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.53 E-value=3.7e+02 Score=22.75 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--------HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHH
Q 001258 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1113)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (1113)
...+-..++...-|.++...+++=.....+ ...-.-+...|+|++|+.++.......... ..+.+.+- .
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a-~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS-Q 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH-H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH-H
Confidence 344445555566677777777665444332 112223456788888888777652222111 11222111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 001258 80 KYLEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~l~ 102 (1113)
. +...++.++|+..+++-+.
T Consensus 108 ~---~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 A---LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp H---HHHHTCHHHHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHHHHH
Confidence 1 2345778888887775543
No 417
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.44 E-value=3.6e+02 Score=22.54 Aligned_cols=54 Identities=6% Similarity=0.127 Sum_probs=28.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1113)
Q Consensus 906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d 979 (1113)
..+.+..||++++... ++ +|...+... ..-..+.+..+|.+++...++...+|.
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~ 75 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWV 75 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEE
Confidence 4566667777666432 22 777554210 012456677777766654444434554
No 418
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=20.99 E-value=1.9e+02 Score=24.60 Aligned_cols=70 Identities=7% Similarity=0.083 Sum_probs=42.7
Q ss_pred HHhhccCHHHHHHHhccCc-cccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhc
Q 001258 43 DEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1113)
Q Consensus 43 ~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~ 120 (1113)
.+...|+|++|++.+.+.. ..+.+. ..|. ..-.=++..|+..+|+..+++-+. +...+..-+..+..++.
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~---~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENA----ILYS---NRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH---HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH---HHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHH
Confidence 3567899999999998752 222221 1122 222233457999999999987755 22335555666666543
No 419
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.92 E-value=4e+02 Score=22.85 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=9.1
Q ss_pred hhccCHHHHHHHhccC
Q 001258 45 VHNGNWDDVEKYLSGF 60 (1113)
Q Consensus 45 i~~g~w~~~~~~~~~~ 60 (1113)
...|+|++|+..+...
T Consensus 63 ~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3456666666655554
No 420
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=20.72 E-value=50 Score=25.74 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=25.5
Q ss_pred CcchHHHHHHHHHHHhhcCH-HHHHHHHHHhcCCCc
Q 001258 2 SSLSRELVFLILQFLDEEKF-KETVHKLEQESGFFF 36 (1113)
Q Consensus 2 ~~~~~~v~~li~q~L~~~g~-~~s~~~L~~Esg~~~ 36 (1113)
+.-.+.+...|+..|.+.|| ..+...+.++.|+..
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 62 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 62 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 34456789999999999998 455566666666654
No 421
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.70 E-value=4.2e+02 Score=26.52 Aligned_cols=93 Identities=10% Similarity=-0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---HH--------HHHHHhhccCHHHHHHHhccCccc--cCcccchhhHH
Q 001258 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN---MK--------YFEDEVHNGNWDDVEKYLSGFTKV--DDNRYSMKIFF 74 (1113)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~--------~~~~~i~~g~w~~~~~~~~~~~~~--~~~~~~~~~~~ 74 (1113)
+...|..++....|.++...+++.-..... .. .-.-....|++++|+.++.+.... ...... ...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--HHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--HHH
Confidence 444566677777888888887776543321 11 111123456888888887765221 111110 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001258 75 EIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 75 ~l~~~~~lell~~~~~~~a~~~l~~~l~ 102 (1113)
.++-..-.=+...|++++|+..+++.+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233333334557888888888887764
No 422
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=20.24 E-value=2.1e+02 Score=27.50 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc------c--HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHHH
Q 001258 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF------N--MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEI 76 (1113)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~l 76 (1113)
+....+-..++...-|.++...|++=..... + ...-......|+|++|+..+..+. ..+.+.......|.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455666778888889999998876322111 1 223345567899999999999873 333332211133322
Q ss_pred HHHHHHH---------------HHhcCCHHHHHHHHHhhccc
Q 001258 77 RKQKYLE---------------ALDKHDRAKAVEILVKDLKV 103 (1113)
Q Consensus 77 ~~~~~le---------------ll~~~~~~~a~~~l~~~l~~ 103 (1113)
-..|.+ ++..++..+|+..+++-+.-
T Consensus 85 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 85 -GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp -HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 222322 12457789999999877653
No 423
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=20.17 E-value=2.2e+02 Score=23.93 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHh
Q 001258 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1113)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1113)
...+..|+|++|+..+.......... ...+-..-.=+...|+..+|+..+++-+. +...+++-+..|..++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
No 424
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.15 E-value=2.2e+02 Score=24.39 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=44.6
Q ss_pred HHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHH
Q 001258 39 KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1113)
Q Consensus 39 ~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1113)
..-..+...|+|++|+.++........+. .....++...-.-++..+++.+|+..+++-+.- ...+..-+..+..+
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHH
Confidence 34455678899999999998863332111 011222222222345689999999999876542 22244555555554
Q ss_pred h
Q 001258 119 L 119 (1113)
Q Consensus 119 ~ 119 (1113)
+
T Consensus 109 ~ 109 (148)
T 2dba_A 109 L 109 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 425
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.13 E-value=3e+02 Score=30.16 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHH-hhcCHHHHHHHH---HHhcCCCcc--------HHHHHHHhhccCHHHHHHHhccCcc--ccCcccchhhH
Q 001258 8 LVFLILQFL-DEEKFKETVHKL---EQESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFTK--VDDNRYSMKIF 73 (1113)
Q Consensus 8 v~~li~q~L-~~~g~~~s~~~L---~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~~~~~~~--~~~~~~~~~~~ 73 (1113)
+.+.+.... .+..|.+++..| +.|+.-..+ ...+|-++..+||..|..++.+... ....... .+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~-~lk 217 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE-SLK 217 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH-HHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH-HHH
Confidence 444444444 444599998766 458865554 6788889999999999999987621 1111111 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001258 74 FEIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1113)
Q Consensus 74 ~~l~~~~~lell~~~~~~~a~~~l~~~l~ 102 (1113)
..++.+.-.=....+++.+|...+.+-+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22222222222456788888777765543
No 426
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.12 E-value=3.5e+02 Score=22.68 Aligned_cols=87 Identities=10% Similarity=-0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHH
Q 001258 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1113)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 83 (1113)
..+-..++....|.++...+++=..+..+ ...-.-....|+|++|+..+.......... ....+.+ -..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l-~~~--- 86 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL-GQC--- 86 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHH-HHH---
Confidence 34444555555688887777654333222 222333456799999998888763332111 1122222 112
Q ss_pred HHhcCCHHHHHHHHHhhc
Q 001258 84 ALDKHDRAKAVEILVKDL 101 (1113)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1113)
++..+++.+|+..+++-+
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 234688889988887554
No 427
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=20.02 E-value=7.1e+02 Score=25.39 Aligned_cols=161 Identities=9% Similarity=0.051 Sum_probs=84.1
Q ss_pred CCeeEEEEec--CCCcEEEEEecCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258 860 PAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1113)
Q Consensus 860 ~~i~~l~~s~--~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd 930 (1113)
..|.++..-+ .+..+++..+.+|.++--.+.. +.....+..+ +.+..+....+...++..+.+|.+..++
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEE
Confidence 3465554321 1456788899999999988753 2222234444 5666666655566788888899888887
Q ss_pred CCCCcccc----c-cccccCCCCCCCCCCCceEEEccCCcEEE-EEcCCeEEEEeCCccce-------eeccccCCCCCC
Q 001258 931 SDGWEKQK----N-RFLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAIFETTKLEC-------VKQWVPRESSAP 997 (1113)
Q Consensus 931 ~~~~~~~~----~-~~~~~~~~~~~~~~~i~~~~~spdg~~l~-~~~d~~v~v~d~~~~~~-------~~~~~~~~h~~~ 997 (1113)
...-.... . ..+....+ ..|..+....++..++ ++..|.++-.++..... +..+....-.+.
T Consensus 174 ~~~v~~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~ 248 (307)
T 1zi0_A 174 ESSVRAMGCNTTGVRGIRLGEG-----DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGL 248 (307)
T ss_dssp GGGSCBCCTTCCCEECCCCCTT-----CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCS
T ss_pred HHHcCccCCCCCCeEeEEeCCC-----CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCe
Confidence 65421110 0 11111111 2445554444444444 46778777776633221 111111111244
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258 998 ITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus 998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
+..+....+...|+..+.+|.+.-+.+..
T Consensus 249 lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 249 VVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 44444433344455556666666555544
Done!