Query 001260
Match_columns 1113
No_of_seqs 424 out of 1537
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.6 1.5E-15 5E-20 140.0 5.1 70 48-117 9-85 (87)
2 2lq6_A Bromodomain-containing 99.2 1.4E-11 4.9E-16 113.5 4.5 64 819-882 10-84 (87)
3 2ku3_A Bromodomain-containing 98.9 2.5E-10 8.4E-15 101.6 3.1 57 697-753 11-68 (71)
4 2l43_A N-teminal domain from h 98.8 1.6E-09 5.4E-14 100.1 3.7 54 699-752 22-76 (88)
5 1wev_A Riken cDNA 1110020M19; 98.6 6.4E-09 2.2E-13 96.0 1.6 58 697-754 11-75 (88)
6 2yt5_A Metal-response element- 98.6 1.7E-08 5.8E-13 87.8 3.6 52 700-751 4-61 (66)
7 4gne_A Histone-lysine N-methyl 98.5 1.8E-07 6.2E-12 89.4 6.9 77 700-793 13-97 (107)
8 1xwh_A Autoimmune regulator; P 98.4 2.4E-07 8.3E-12 81.0 4.3 53 697-753 3-57 (66)
9 1f62_A Transcription factor WS 98.3 3E-07 1E-11 76.2 3.1 46 704-750 2-49 (51)
10 2yql_A PHD finger protein 21A; 98.3 3.8E-07 1.3E-11 77.2 3.8 49 698-750 5-55 (56)
11 1mm2_A MI2-beta; PHD, zinc fin 98.3 4.2E-07 1.4E-11 78.4 3.7 49 699-751 6-56 (61)
12 2l5u_A Chromodomain-helicase-D 98.2 8.9E-07 3E-11 76.3 4.4 51 697-751 6-58 (61)
13 2e6r_A Jumonji/ARID domain-con 98.2 6E-07 2.1E-11 83.5 3.1 54 697-751 11-66 (92)
14 2puy_A PHD finger protein 21A; 98.2 7.5E-07 2.6E-11 76.4 3.3 48 701-752 4-53 (60)
15 2lri_C Autoimmune regulator; Z 98.2 1.1E-06 3.9E-11 77.0 4.1 46 702-751 12-59 (66)
16 1fp0_A KAP-1 corepressor; PHD 98.1 1.6E-06 5.6E-11 80.0 4.9 52 696-751 19-72 (88)
17 2ysm_A Myeloid/lymphoid or mix 98.1 4.9E-06 1.7E-10 79.3 7.8 94 700-832 5-103 (111)
18 2kwj_A Zinc finger protein DPF 98.1 1.9E-06 6.4E-11 82.9 4.2 47 703-749 2-59 (114)
19 3v43_A Histone acetyltransfera 98.0 6.9E-06 2.3E-10 78.7 6.5 92 703-832 6-111 (112)
20 2e6s_A E3 ubiquitin-protein li 98.0 4.1E-06 1.4E-10 75.6 4.1 46 704-750 28-76 (77)
21 3asl_A E3 ubiquitin-protein li 97.9 6E-06 2.1E-10 73.1 3.3 46 704-750 20-68 (70)
22 1wen_A Inhibitor of growth fam 97.8 1.3E-05 4.6E-10 71.1 5.1 49 700-751 14-65 (71)
23 3shb_A E3 ubiquitin-protein li 97.8 8.9E-06 3.1E-10 73.4 3.2 46 704-750 28-76 (77)
24 2kwj_A Zinc finger protein DPF 97.7 9.1E-06 3.1E-10 78.2 2.6 50 703-753 59-110 (114)
25 3o36_A Transcription intermedi 97.7 1.9E-05 6.3E-10 81.5 4.4 50 700-753 2-53 (184)
26 2jmi_A Protein YNG1, ING1 homo 97.7 1.7E-05 6E-10 73.6 3.3 50 700-752 24-77 (90)
27 2k16_A Transcription initiatio 97.7 1.4E-05 4.8E-10 71.1 2.6 53 700-753 16-70 (75)
28 2vnf_A ING 4, P29ING4, inhibit 97.7 1.1E-05 3.9E-10 69.3 1.8 47 701-750 9-58 (60)
29 3u5n_A E3 ubiquitin-protein li 97.6 2.3E-05 7.9E-10 82.3 4.1 49 700-752 5-55 (207)
30 3c6w_A P28ING5, inhibitor of g 97.6 1.5E-05 5.2E-10 68.4 1.9 47 701-750 8-57 (59)
31 1weu_A Inhibitor of growth fam 97.6 7.5E-05 2.5E-09 69.5 6.3 50 700-752 34-86 (91)
32 3v43_A Histone acetyltransfera 97.6 3.2E-05 1.1E-09 74.1 3.9 50 701-750 60-111 (112)
33 2g6q_A Inhibitor of growth pro 97.5 2.8E-05 9.5E-10 67.4 1.9 49 700-751 9-60 (62)
34 2ro1_A Transcription intermedi 97.4 4.7E-05 1.6E-09 79.3 2.6 46 702-751 2-49 (189)
35 3ask_A E3 ubiquitin-protein li 97.4 6.6E-05 2.2E-09 80.2 3.5 47 703-750 175-224 (226)
36 2lv9_A Histone-lysine N-methyl 97.4 0.00011 3.7E-09 69.1 4.5 47 702-750 28-75 (98)
37 2ysm_A Myeloid/lymphoid or mix 97.3 0.00015 5.2E-09 69.0 4.2 49 702-751 54-104 (111)
38 1we9_A PHD finger family prote 97.2 0.00027 9.2E-09 61.0 4.5 53 699-751 3-58 (64)
39 1x4i_A Inhibitor of growth pro 97.1 0.00015 5.1E-09 64.3 2.4 49 701-752 5-56 (70)
40 1wee_A PHD finger family prote 96.9 0.00053 1.8E-08 60.7 3.5 52 700-752 14-67 (72)
41 3o70_A PHD finger protein 13; 96.8 0.00084 2.9E-08 59.1 4.2 49 700-750 17-66 (68)
42 1wew_A DNA-binding family prot 96.8 0.00079 2.7E-08 60.6 3.8 51 700-752 14-73 (78)
43 2vpb_A Hpygo1, pygopus homolog 96.8 0.00035 1.2E-08 61.1 1.3 49 701-749 7-64 (65)
44 2rsd_A E3 SUMO-protein ligase 96.7 0.00095 3.3E-08 58.5 3.3 49 701-751 9-65 (68)
45 1wep_A PHF8; structural genomi 96.6 0.001 3.5E-08 59.9 3.0 52 700-752 10-64 (79)
46 1wem_A Death associated transc 96.6 0.00091 3.1E-08 59.7 2.6 51 701-753 15-72 (76)
47 2kgg_A Histone demethylase jar 96.3 0.0016 5.5E-08 54.3 2.3 46 704-749 4-52 (52)
48 2ri7_A Nucleosome-remodeling f 96.3 0.0007 2.4E-08 69.0 0.1 51 700-751 6-59 (174)
49 2xb1_A Pygopus homolog 2, B-ce 96.2 0.0018 6.3E-08 61.5 2.6 50 703-752 4-62 (105)
50 3o7a_A PHD finger protein 13 v 95.7 0.0059 2E-07 50.8 3.2 45 705-750 6-51 (52)
51 2lbm_A Transcriptional regulat 95.6 0.0041 1.4E-07 62.2 2.1 47 700-750 61-116 (142)
52 3kqi_A GRC5, PHD finger protei 95.2 0.0057 1.9E-07 54.6 1.4 49 704-752 11-62 (75)
53 3ql9_A Transcriptional regulat 94.3 0.011 3.6E-07 58.4 1.1 47 701-751 56-111 (129)
54 3kv5_D JMJC domain-containing 93.3 0.02 6.7E-07 67.7 1.0 51 702-753 37-90 (488)
55 3lqh_A Histone-lysine N-methyl 92.9 0.035 1.2E-06 57.7 2.0 49 703-751 3-63 (183)
56 3kv4_A PHD finger protein 8; e 89.5 0.052 1.8E-06 63.4 -0.9 51 703-753 5-58 (447)
57 1wil_A KIAA1045 protein; ring 88.8 0.17 5.9E-06 46.4 2.2 50 700-751 13-76 (89)
58 1xn7_A Hypothetical protein YH 86.1 0.4 1.4E-05 43.2 2.9 34 221-254 4-37 (78)
59 1wew_A DNA-binding family prot 86.0 0.39 1.3E-05 43.0 2.8 32 824-856 16-49 (78)
60 1we9_A PHD finger family prote 85.0 0.36 1.2E-05 41.3 2.0 30 825-856 7-39 (64)
61 2k02_A Ferrous iron transport 84.7 0.43 1.5E-05 44.0 2.5 34 221-254 4-37 (87)
62 1wem_A Death associated transc 84.4 0.55 1.9E-05 41.6 3.0 29 824-855 16-46 (76)
63 1weu_A Inhibitor of growth fam 84.3 0.77 2.6E-05 42.7 4.0 32 824-856 36-69 (91)
64 1wep_A PHF8; structural genomi 82.0 0.85 2.9E-05 40.8 3.2 28 825-855 13-43 (79)
65 4gne_A Histone-lysine N-methyl 81.5 0.73 2.5E-05 44.0 2.7 31 824-855 15-45 (107)
66 3pur_A Lysine-specific demethy 81.1 0.78 2.7E-05 54.5 3.4 37 715-751 55-94 (528)
67 1wen_A Inhibitor of growth fam 80.6 1.1 3.9E-05 39.6 3.4 32 824-856 16-49 (71)
68 4bbq_A Lysine-specific demethy 80.5 2 6.9E-05 40.7 5.4 80 703-805 8-97 (117)
69 3o70_A PHD finger protein 13; 80.5 0.82 2.8E-05 40.1 2.5 31 824-857 19-51 (68)
70 2zet_C Melanophilin; complex, 79.9 0.69 2.4E-05 46.8 2.1 48 703-751 69-117 (153)
71 2k16_A Transcription initiatio 79.3 0.8 2.7E-05 40.4 2.1 31 825-857 19-51 (75)
72 3c6w_A P28ING5, inhibitor of g 78.6 0.84 2.9E-05 38.9 1.9 31 825-856 10-42 (59)
73 1wee_A PHD finger family prote 78.6 0.78 2.7E-05 40.3 1.8 31 824-857 16-49 (72)
74 2lv9_A Histone-lysine N-methyl 78.5 0.82 2.8E-05 42.7 2.0 46 825-882 29-76 (98)
75 2xb1_A Pygopus homolog 2, B-ce 77.5 1 3.5E-05 42.6 2.3 30 825-855 4-36 (105)
76 2puy_A PHD finger protein 21A; 76.1 1.1 3.9E-05 37.9 2.0 47 825-882 6-52 (60)
77 2rsd_A E3 SUMO-protein ligase 75.9 1.6 5.4E-05 38.0 2.9 29 825-854 11-41 (68)
78 2ri7_A Nucleosome-remodeling f 74.7 0.96 3.3E-05 45.8 1.4 27 825-854 9-38 (174)
79 2lri_C Autoimmune regulator; Z 74.5 1.7 5.7E-05 38.0 2.7 47 824-881 12-58 (66)
80 4bbq_A Lysine-specific demethy 73.7 0.88 3E-05 43.2 0.8 37 715-751 72-114 (117)
81 2kgg_A Histone demethylase jar 73.7 1.4 4.7E-05 36.5 1.9 29 826-855 4-35 (52)
82 2vnf_A ING 4, P29ING4, inhibit 73.7 1.4 4.7E-05 37.7 1.9 31 825-856 11-43 (60)
83 3o7a_A PHD finger protein 13 v 73.5 1.3 4.4E-05 36.6 1.7 28 828-857 7-36 (52)
84 2yql_A PHD finger protein 21A; 73.5 1.7 5.9E-05 36.3 2.5 30 824-856 9-38 (56)
85 1f62_A Transcription factor WS 72.5 1.6 5.3E-05 35.7 1.9 29 826-856 2-32 (51)
86 2l5u_A Chromodomain-helicase-D 72.5 1.5 5.2E-05 37.4 1.9 30 825-857 12-41 (61)
87 1xwh_A Autoimmune regulator; P 72.4 1.4 4.8E-05 38.1 1.7 30 824-856 8-37 (66)
88 2l0k_A Stage III sporulation p 72.1 2.3 7.8E-05 39.5 3.2 49 222-271 10-60 (93)
89 2vpb_A Hpygo1, pygopus homolog 70.3 2.1 7E-05 37.3 2.3 29 825-854 9-40 (65)
90 1mm2_A MI2-beta; PHD, zinc fin 69.8 1.5 5.3E-05 37.4 1.4 47 824-881 9-55 (61)
91 2g6q_A Inhibitor of growth pro 69.3 2.2 7.4E-05 36.8 2.2 32 56-88 11-44 (62)
92 2jmi_A Protein YNG1, ING1 homo 69.2 2 7E-05 39.8 2.1 31 824-855 26-58 (90)
93 1r69_A Repressor protein CI; g 68.5 6.2 0.00021 32.5 4.9 52 221-272 2-53 (69)
94 1zbd_B Rabphilin-3A; G protein 67.0 2.9 9.9E-05 41.3 2.8 49 703-751 56-107 (134)
95 1jko_C HIN recombinase, DNA-in 66.7 6.4 0.00022 30.5 4.3 32 224-256 13-44 (52)
96 1uxc_A FRUR (1-57), fructose r 66.0 4 0.00014 35.2 3.2 48 234-281 1-52 (65)
97 2ku3_A Bromodomain-containing 65.8 3.6 0.00012 36.4 2.9 32 824-857 16-51 (71)
98 3kqi_A GRC5, PHD finger protei 65.8 2.1 7.1E-05 37.9 1.4 29 826-856 11-42 (75)
99 2yt5_A Metal-response element- 65.0 2.6 8.8E-05 36.1 1.8 31 824-856 6-40 (66)
100 2enn_A NPKC-theta, protein kin 65.0 3.9 0.00013 36.4 3.0 35 701-735 33-68 (77)
101 1ptq_A Protein kinase C delta 64.9 3.8 0.00013 33.0 2.7 33 702-734 11-44 (50)
102 1zug_A Phage 434 CRO protein; 64.7 7.9 0.00027 32.0 4.8 52 220-271 3-54 (71)
103 3pfq_A PKC-B, PKC-beta, protei 64.5 2.6 8.9E-05 51.1 2.4 33 702-734 48-81 (674)
104 4b6d_A RAC GTPase-activating p 63.9 2.8 9.4E-05 36.1 1.8 34 702-735 19-52 (61)
105 2r1j_L Repressor protein C2; p 63.5 6.8 0.00023 32.0 4.1 52 220-271 5-57 (68)
106 3b7h_A Prophage LP1 protein 11 63.0 7.3 0.00025 32.9 4.3 53 220-272 7-61 (78)
107 2d8s_A Cellular modulator of i 62.5 5.7 0.00019 35.6 3.6 51 701-751 14-67 (80)
108 2yuu_A NPKC-delta, protein kin 61.7 4.7 0.00016 36.3 3.0 35 701-735 27-62 (83)
109 1wil_A KIAA1045 protein; ring 61.4 3.4 0.00012 38.0 2.0 35 825-861 16-51 (89)
110 2xi8_A Putative transcription 61.1 7.5 0.00026 31.6 3.9 49 224-272 5-54 (66)
111 1adr_A P22 C2 repressor; trans 61.1 7.7 0.00026 32.5 4.1 53 220-272 5-58 (76)
112 3asl_A E3 ubiquitin-protein li 60.5 3.4 0.00012 36.3 1.8 29 826-856 20-50 (70)
113 1y7y_A C.AHDI; helix-turn-heli 59.8 9.6 0.00033 31.7 4.5 53 220-272 13-66 (74)
114 1wev_A Riken cDNA 1110020M19; 59.6 3.7 0.00013 37.6 1.9 52 825-882 17-72 (88)
115 2enz_A NPKC-theta, protein kin 59.2 6.4 0.00022 33.7 3.2 34 702-735 23-57 (65)
116 1faq_A RAF-1; transferase, ser 58.8 6.1 0.00021 32.1 2.9 31 702-735 14-44 (52)
117 2k9q_A Uncharacterized protein 58.8 7.8 0.00027 33.1 3.8 53 220-272 2-55 (77)
118 2ict_A Antitoxin HIGA; helix-t 58.8 9.8 0.00034 33.8 4.6 56 217-272 5-61 (94)
119 3bs3_A Putative DNA-binding pr 58.7 8.7 0.0003 32.3 4.0 52 221-272 11-63 (76)
120 1iym_A EL5; ring-H2 finger, ub 58.4 6.6 0.00023 31.5 3.1 49 700-750 3-51 (55)
121 2l8n_A Transcriptional repress 57.9 7.4 0.00025 33.7 3.5 48 233-280 9-57 (67)
122 3lqh_A Histone-lysine N-methyl 57.6 4.3 0.00015 42.1 2.2 29 825-855 3-37 (183)
123 3uej_A NPKC-delta, protein kin 57.1 5 0.00017 34.4 2.2 34 702-735 20-54 (65)
124 2fnf_X Putative RAS effector N 56.7 5.6 0.00019 35.1 2.5 31 702-734 35-65 (72)
125 2e6s_A E3 ubiquitin-protein li 56.6 4.3 0.00015 36.4 1.8 29 826-856 28-58 (77)
126 2wiu_B HTH-type transcriptiona 56.6 10 0.00035 32.9 4.2 55 218-272 10-65 (88)
127 2b5a_A C.BCLI; helix-turn-heli 55.8 13 0.00043 31.3 4.5 53 220-272 10-63 (77)
128 1fp0_A KAP-1 corepressor; PHD 55.5 4.2 0.00015 37.6 1.6 47 824-881 25-71 (88)
129 2ao9_A Phage protein; structur 54.6 9.8 0.00034 38.5 4.2 48 233-284 48-126 (155)
130 3o36_A Transcription intermedi 54.1 4.5 0.00015 41.3 1.7 29 825-856 5-33 (184)
131 2l43_A N-teminal domain from h 53.9 5.8 0.0002 36.3 2.2 46 824-881 25-74 (88)
132 2eli_A Protein kinase C alpha 53.0 7.6 0.00026 35.1 2.8 35 701-735 27-62 (85)
133 1y8f_A UNC-13 homolog A, MUNC1 52.9 6.8 0.00023 33.7 2.4 33 702-734 24-57 (66)
134 2a20_A Regulating synaptic mem 52.2 8.7 0.0003 33.1 2.8 52 699-750 6-59 (62)
135 2kpj_A SOS-response transcript 51.8 15 0.00051 32.7 4.6 53 220-272 9-62 (94)
136 2e6r_A Jumonji/ARID domain-con 51.5 4.6 0.00016 37.3 1.1 48 825-882 17-66 (92)
137 3trb_A Virulence-associated pr 51.0 18 0.00063 33.6 5.2 59 216-274 9-69 (104)
138 1x4i_A Inhibitor of growth pro 50.9 7 0.00024 34.4 2.2 32 825-857 7-40 (70)
139 3t76_A VANU, transcriptional r 50.5 13 0.00045 33.6 4.0 64 206-272 13-76 (88)
140 2csz_A Synaptotagmin-like prot 50.5 5.7 0.0002 35.8 1.5 50 700-751 23-73 (76)
141 3omt_A Uncharacterized protein 50.3 12 0.00042 31.5 3.6 49 224-272 12-61 (73)
142 3u5n_A E3 ubiquitin-protein li 50.0 5.2 0.00018 41.7 1.4 29 825-856 8-36 (207)
143 1rfh_A RAS association (ralgds 49.9 7.4 0.00025 32.9 2.1 32 702-735 22-53 (59)
144 1tc3_C Protein (TC3 transposas 49.6 14 0.00048 27.9 3.5 29 225-254 14-42 (51)
145 3rsn_A SET1/ASH2 histone methy 49.5 8.5 0.00029 39.8 2.8 48 828-881 8-58 (177)
146 3s8q_A R-M controller protein; 47.3 20 0.00068 30.7 4.5 53 220-272 11-64 (82)
147 2ewt_A BLDD, putative DNA-bind 46.5 21 0.00073 29.5 4.5 53 220-272 8-63 (71)
148 2db6_A SH3 and cysteine rich d 46.3 3.7 0.00013 36.3 -0.4 35 701-735 27-62 (74)
149 2htj_A P fimbrial regulatory p 46.2 10 0.00036 33.1 2.6 32 223-254 4-35 (81)
150 3qq6_A HTH-type transcriptiona 46.0 23 0.00079 30.6 4.7 54 219-272 9-64 (78)
151 1x57_A Endothelial differentia 46.0 20 0.00068 31.5 4.4 54 219-272 12-66 (91)
152 3cec_A Putative antidote prote 45.8 21 0.00073 32.2 4.7 55 218-272 16-71 (104)
153 2jt1_A PEFI protein; solution 44.9 12 0.0004 33.6 2.6 33 222-254 7-45 (77)
154 1r79_A Diacylglycerol kinase, 44.2 10 0.00035 34.7 2.2 33 702-734 38-72 (84)
155 1xmk_A Double-stranded RNA-spe 43.9 9.8 0.00033 34.3 2.0 34 222-255 14-48 (79)
156 2a6c_A Helix-turn-helix motif; 43.7 24 0.00082 30.7 4.5 54 219-272 17-72 (83)
157 2ro1_A Transcription intermedi 43.4 7.9 0.00027 40.0 1.5 46 825-881 3-48 (189)
158 3kv4_A PHD finger protein 8; e 43.3 7.4 0.00025 45.5 1.4 28 826-855 6-36 (447)
159 2lbm_A Transcriptional regulat 43.2 9.2 0.00032 38.2 1.9 30 825-857 64-93 (142)
160 2ef8_A C.ECOT38IS, putative tr 43.1 25 0.00087 29.9 4.5 54 220-273 10-64 (84)
161 3kz3_A Repressor protein CI; f 42.8 23 0.00077 30.5 4.2 53 220-272 12-65 (80)
162 1vyx_A ORF K3, K3RING; zinc-bi 42.6 2.5 8.5E-05 36.0 -2.0 50 700-751 4-56 (60)
163 1kbe_A Kinase suppressor of RA 42.5 11 0.00039 31.0 2.0 29 703-734 15-43 (49)
164 2eby_A Putative HTH-type trans 42.3 24 0.0008 32.4 4.4 55 218-272 8-64 (113)
165 1qbj_A Protein (double-strande 42.3 11 0.00036 34.1 2.0 40 215-254 5-48 (81)
166 2jvl_A TRMBF1; coactivator, he 39.6 47 0.0016 30.5 6.1 55 218-272 32-89 (107)
167 1q1h_A TFE, transcription fact 39.5 15 0.0005 33.8 2.5 33 222-254 21-54 (110)
168 3kv5_D JMJC domain-containing 39.4 9.3 0.00032 45.1 1.5 29 825-855 37-68 (488)
169 3vk0_A NHTF, transcriptional r 39.2 31 0.0011 31.8 4.8 53 220-272 21-74 (114)
170 3f6w_A XRE-family like protein 38.9 29 0.00098 29.7 4.2 53 220-272 14-67 (83)
171 3shb_A E3 ubiquitin-protein li 38.4 11 0.00038 33.8 1.4 30 826-857 28-59 (77)
172 2ct0_A Non-SMC element 1 homol 38.0 22 0.00074 31.6 3.3 32 824-857 15-46 (74)
173 3kjx_A Transcriptional regulat 37.6 17 0.00059 39.2 3.1 51 231-281 8-59 (344)
174 1u2w_A CADC repressor, cadmium 37.6 20 0.00069 33.8 3.3 54 223-276 46-116 (122)
175 3g5g_A Regulatory protein; tra 37.0 34 0.0011 31.2 4.5 53 220-272 28-81 (99)
176 1b0n_A Protein (SINR protein); 37.0 31 0.0011 31.1 4.3 52 221-272 2-55 (111)
177 2x48_A CAG38821; archeal virus 36.8 20 0.00068 28.7 2.7 31 223-254 22-52 (55)
178 1r71_A Transcriptional repress 36.2 21 0.00071 36.7 3.3 52 216-268 36-87 (178)
179 1lmb_3 Protein (lambda repress 36.0 33 0.0011 29.9 4.2 53 220-272 17-70 (92)
180 2ku7_A MLL1 PHD3-CYP33 RRM chi 35.3 8.5 0.00029 36.3 0.2 35 717-751 1-44 (140)
181 3ask_A E3 ubiquitin-protein li 34.7 12 0.0004 40.2 1.1 29 826-856 176-206 (226)
182 3cuo_A Uncharacterized HTH-typ 34.6 25 0.00084 31.0 3.1 34 222-255 27-60 (99)
183 3bd1_A CRO protein; transcript 34.5 27 0.00091 30.0 3.3 47 225-272 4-50 (79)
184 1neq_A DNA-binding protein NER 34.1 37 0.0013 29.7 4.1 47 222-271 12-58 (74)
185 2vrw_B P95VAV, VAV1, proto-onc 33.6 24 0.00082 39.8 3.6 36 699-734 354-390 (406)
186 2row_A RHO-associated protein 33.2 13 0.00044 34.0 1.0 33 702-734 35-70 (84)
187 4a0z_A Transcription factor FA 32.6 23 0.0008 36.5 3.0 35 222-256 15-49 (190)
188 1weo_A Cellulose synthase, cat 32.4 8.4 0.00029 35.8 -0.3 49 702-751 16-67 (93)
189 3k1l_B Fancl; UBC, ring, RWD, 32.4 22 0.00075 40.5 2.9 34 700-733 306-343 (381)
190 3nw0_A Non-structural maintena 32.4 18 0.0006 38.8 2.1 46 702-750 180-225 (238)
191 3op9_A PLI0006 protein; struct 32.3 40 0.0014 30.8 4.3 55 218-272 7-62 (114)
192 3ky9_A Proto-oncogene VAV; cal 32.3 25 0.00086 41.9 3.6 36 700-735 527-563 (587)
193 1x4j_A Ring finger protein 38; 31.0 13 0.00044 31.9 0.6 49 700-751 21-69 (75)
194 3f52_A CLP gene regulator (CLG 30.8 43 0.0015 30.8 4.2 56 219-274 27-83 (117)
195 2heo_A Z-DNA binding protein 1 30.6 24 0.00081 30.2 2.2 32 223-254 14-46 (67)
196 1y9q_A Transcriptional regulat 30.2 45 0.0015 33.3 4.6 53 220-272 11-64 (192)
197 2ecm_A Ring finger and CHY zin 29.7 31 0.001 27.4 2.7 48 701-750 4-51 (55)
198 1vz0_A PARB, chromosome partit 29.6 33 0.0011 36.4 3.6 51 217-268 119-169 (230)
199 3ql9_A Transcriptional regulat 29.3 21 0.00071 35.2 1.8 30 825-857 58-87 (129)
200 2zkz_A Transcriptional repress 29.1 27 0.00092 31.7 2.5 32 223-254 31-62 (99)
201 1weq_A PHD finger protein 7; s 29.0 35 0.0012 31.3 3.1 35 716-751 44-79 (85)
202 1nd9_A Translation initiation 28.9 23 0.00079 27.9 1.7 23 233-255 2-24 (49)
203 2dbb_A Putative HTH-type trans 28.6 27 0.00092 33.7 2.5 32 223-254 13-44 (151)
204 3i4p_A Transcriptional regulat 28.2 25 0.00086 34.7 2.3 32 223-254 7-38 (162)
205 3rsn_A SET1/ASH2 histone methy 27.3 39 0.0013 34.9 3.5 70 708-801 10-81 (177)
206 2glo_A Brinker CG9653-PA; prot 27.1 52 0.0018 27.0 3.7 34 218-252 7-44 (59)
207 1rzs_A Antirepressor, regulato 27.1 50 0.0017 27.5 3.6 47 225-275 3-50 (61)
208 2hsg_A Glucose-resistance amyl 27.0 35 0.0012 36.6 3.3 48 233-280 2-50 (332)
209 1qgp_A Protein (double strande 26.8 31 0.0011 30.5 2.3 33 222-254 17-52 (77)
210 1e4u_A Transcriptional repress 26.7 23 0.00079 31.4 1.5 51 700-752 9-60 (78)
211 2l1p_A DNA-binding protein SAT 26.6 36 0.0012 31.1 2.7 48 221-271 22-69 (83)
212 2cfx_A HTH-type transcriptiona 26.6 31 0.0011 33.2 2.5 32 223-254 9-40 (144)
213 2cg4_A Regulatory protein ASNC 26.4 31 0.0011 33.4 2.5 32 223-254 12-43 (152)
214 2ect_A Ring finger protein 126 26.3 1.1E+02 0.0036 26.1 5.7 51 700-753 13-63 (78)
215 2e1c_A Putative HTH-type trans 26.2 31 0.0011 34.7 2.5 33 222-254 30-62 (171)
216 3h5t_A Transcriptional regulat 26.1 32 0.0011 37.5 2.8 49 231-279 7-57 (366)
217 2ct0_A Non-SMC element 1 homol 26.0 31 0.0011 30.7 2.2 30 57-88 16-45 (74)
218 3ivp_A Putative transposon-rel 25.5 62 0.0021 30.2 4.3 55 218-272 10-65 (126)
219 2cyy_A Putative HTH-type trans 25.4 33 0.0011 33.2 2.5 32 223-254 11-42 (151)
220 3jth_A Transcription activator 24.9 28 0.00096 31.1 1.7 31 223-254 27-57 (98)
221 3mlf_A Transcriptional regulat 24.6 56 0.0019 30.3 3.8 52 221-272 24-76 (111)
222 1oyi_A Double-stranded RNA-bin 24.5 28 0.00096 31.7 1.6 32 222-254 20-51 (82)
223 1i1g_A Transcriptional regulat 24.2 36 0.0012 32.2 2.5 32 223-254 8-39 (141)
224 2w25_A Probable transcriptiona 23.8 37 0.0013 32.8 2.5 33 222-254 10-42 (150)
225 1dw9_A Cyanate lyase; cyanate 23.6 82 0.0028 31.9 5.0 52 230-281 23-85 (156)
226 2p5v_A Transcriptional regulat 23.6 37 0.0013 33.3 2.5 33 222-254 13-45 (162)
227 2elh_A CG11849-PA, LD40883P; s 23.6 45 0.0016 29.6 2.9 33 218-251 24-56 (87)
228 3lfp_A CSP231I C protein; tran 23.6 59 0.002 29.0 3.6 51 222-272 3-58 (98)
229 2l49_A C protein; P2 bacteriop 23.5 46 0.0016 29.4 2.9 36 220-255 4-39 (99)
230 3eus_A DNA-binding protein; st 23.5 83 0.0029 27.4 4.6 52 221-272 15-67 (86)
231 2pn6_A ST1022, 150AA long hypo 23.1 36 0.0012 32.7 2.2 32 223-254 7-38 (150)
232 1v5n_A PDI-like hypothetical p 22.9 41 0.0014 30.7 2.5 61 792-857 18-79 (89)
233 1sfx_A Conserved hypothetical 22.1 46 0.0016 29.3 2.6 33 222-254 23-55 (109)
234 1v5n_A PDI-like hypothetical p 21.8 44 0.0015 30.5 2.4 60 21-88 18-78 (89)
235 2l0b_A E3 ubiquitin-protein li 21.3 27 0.00093 31.3 0.9 49 700-751 38-86 (91)
236 1y0u_A Arsenical resistance op 21.1 45 0.0015 29.8 2.3 31 222-254 34-64 (96)
237 1v4r_A Transcriptional repress 20.7 56 0.0019 29.6 2.9 37 219-255 14-57 (102)
238 3fmy_A HTH-type transcriptiona 20.7 1E+02 0.0035 26.1 4.4 52 222-274 13-65 (73)
239 2kko_A Possible transcriptiona 20.6 42 0.0014 30.9 2.0 32 222-254 28-59 (108)
240 3nw0_A Non-structural maintena 20.5 41 0.0014 36.0 2.2 32 824-857 180-211 (238)
241 1v87_A Deltex protein 2; ring- 20.5 45 0.0016 30.7 2.3 33 702-734 25-71 (114)
242 2yqk_A Arginine-glutamic acid 20.2 54 0.0019 28.0 2.5 43 538-584 8-51 (63)
243 2bnm_A Epoxidase; oxidoreducta 20.1 86 0.003 31.2 4.4 53 220-272 10-64 (198)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=140.03 Aligned_cols=70 Identities=30% Similarity=0.566 Sum_probs=59.4
Q ss_pred cCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEEcccc------CCcceeeeeccCCCCCCC
Q 001260 48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGKY------GCNNVELRAFCAKHSDIQ 117 (1113)
Q Consensus 48 ~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~aG~~~e~~~~~------g~~~~~~~~fC~~Hr~~~ 117 (1113)
-+||++||+|+|+||+++ .||||||+.++|.++|||+||+.+|++|++.... ....+.+.+||++|+|..
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg 85 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPG 85 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSS
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcC
Confidence 368999999999999987 5999999999999999999999999999875311 122356889999999865
No 2
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=113.53 Aligned_cols=64 Identities=34% Similarity=0.785 Sum_probs=53.6
Q ss_pred ccCCC--CcccccccCc-CCceeecCCCCcccccchhhhhhcCceEEEeeC--------CCceeeeecCCCCChh
Q 001260 819 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST--------GGNFQHKAYCEKHSLE 882 (1113)
Q Consensus 819 ~I~k~--r~~C~iC~~~-~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~--------~g~~~~~iyC~kHs~~ 882 (1113)
+|++. +++|++|+++ .||+|+|..++|.++||++||+.+|+.|+++.. .+.+.+.+||++|+|.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCc
Confidence 56665 5899999987 599999999999999999999999999987531 1235678999999985
No 3
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.95 E-value=2.5e-10 Score=101.58 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=49.3
Q ss_pred CCCCCCCcCcccCCCCC-CCCCeEEccccCcccccccccCcccCCCcccccccccccc
Q 001260 697 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 753 (1113)
Q Consensus 697 ~~ke~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~ 753 (1113)
+...++..|.||.+.++ ..|.||+||+|+.+||+.|||++.+|+|+|+|..|....+
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCc
Confidence 34456788999998763 5789999999999999999999999999999999987643
No 4
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=100.10 Aligned_cols=54 Identities=33% Similarity=0.740 Sum_probs=47.9
Q ss_pred CCCCCcCcccCCCCC-CCCCeEEccccCcccccccccCcccCCCccccccccccc
Q 001260 699 KEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 752 (1113)
Q Consensus 699 ke~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~ 752 (1113)
.+++..|.||.+.++ ..|.||+||+|..+||+.|||++.+|+|.|+|..|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456789999998753 578999999999999999999999999999999998763
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.63 E-value=6.4e-09 Score=95.98 Aligned_cols=58 Identities=26% Similarity=0.639 Sum_probs=48.4
Q ss_pred CCCCCCCcCcccCCCCC-CCCCeEEccccCcccccccccCcc------cCCCccccccccccccC
Q 001260 697 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEELLSS 754 (1113)
Q Consensus 697 ~~ke~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~------ipeg~WlCd~C~~~~~~ 754 (1113)
+..+++.+|.||...+. ..|.||+||+|..+||+.||+.+. +|++.|+|..|......
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred ccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 44556789999998765 468999999999999999999762 68999999999886543
No 6
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.61 E-value=1.7e-08 Score=87.82 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=44.2
Q ss_pred CCCCcCcccCCCCC-CCCCeEEccccCcccccccccCcc----c-CCCcccccccccc
Q 001260 700 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK----E-STGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~----i-peg~WlCd~C~~~ 751 (1113)
.++..|.||...+. ..+.||+|++|..+||+.||+++. + |++.|+|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34578999998653 579999999999999999999753 3 7899999999875
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.47 E-value=1.8e-07 Score=89.36 Aligned_cols=77 Identities=26% Similarity=0.462 Sum_probs=62.3
Q ss_pred CCCCcCcccCCCCCCCCCeEEcc--ccCcccccccccCcccCCCccccccccccccCCCCCCCCCCccCCCccccccccC
Q 001260 700 EHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLC 777 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd--~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~kp~~~~~C~LC 777 (1113)
+++..|.||.+ +++||.|| +|...+|..|+|+..+|.|.|+|..|.-..-.. + ..+.|.+|
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k------------~-~~~~C~~C 75 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS------------A-AVSFCEFC 75 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS------------B-CCEECSSS
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC------------C-CCcCcCCC
Confidence 45678999985 57899999 899999999999999999999999987542211 1 15799999
Q ss_pred CC------CCCcceecCCCcce
Q 001260 778 GG------TTGAFRKSANGQWV 793 (1113)
Q Consensus 778 p~------~gGALKrT~~g~WV 793 (1113)
|. ..|+|+.+..+.|.
T Consensus 76 p~sfC~~c~~g~l~~~~~~~~~ 97 (107)
T 4gne_A 76 PHSFCKDHEKGALVPSALEGRL 97 (107)
T ss_dssp SCEECTTTCTTSCEECTTTTCE
T ss_pred CcchhhhccCCcceecCCCCce
Confidence 96 46899988888883
No 8
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.36 E-value=2.4e-07 Score=80.98 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=44.8
Q ss_pred CCCCCCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccccc
Q 001260 697 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 753 (1113)
Q Consensus 697 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~~ 753 (1113)
+...++..|.||.+ ++.||.||+|..+||..|++ +..+|.+.|+|..|.....
T Consensus 3 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 3 MAQKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred cCCCCCCCCccCCC----CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 34566789999987 46899999999999999999 5567899999999987543
No 9
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.29 E-value=3e-07 Score=76.19 Aligned_cols=46 Identities=30% Similarity=0.873 Sum_probs=40.1
Q ss_pred cCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCccccccccc
Q 001260 704 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 750 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 750 (1113)
.|.||+..+. .+.||.||+|...+|..|++ +..+|++.|+|..|..
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5999998643 67999999999999999995 5678899999999975
No 10
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=3.8e-07 Score=77.19 Aligned_cols=49 Identities=33% Similarity=0.868 Sum_probs=42.2
Q ss_pred CCCCCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCccccccccc
Q 001260 698 SKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 750 (1113)
Q Consensus 698 ~ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 750 (1113)
...++..|.||.+ .+.||.|+.|..++|..|++ +..+|.+.|+|..|..
T Consensus 5 ~~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCC----SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCC----CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456788999997 36899999999999999999 5568899999999964
No 11
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.26 E-value=4.2e-07 Score=78.38 Aligned_cols=49 Identities=24% Similarity=0.716 Sum_probs=42.1
Q ss_pred CCCCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccc
Q 001260 699 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 751 (1113)
Q Consensus 699 ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 751 (1113)
..++..|.||.+ ++.||.||+|..+||+.|++ +..+|++.|+|..|...
T Consensus 6 d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345678999986 46899999999999999999 45678999999999864
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.21 E-value=8.9e-07 Score=76.35 Aligned_cols=51 Identities=29% Similarity=0.849 Sum_probs=43.8
Q ss_pred CCCCCCCcCcccCCCCCCCCCeEEccccCcccccccccCc--ccCCCcccccccccc
Q 001260 697 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA--KESTGPWYCELCEEL 751 (1113)
Q Consensus 697 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~--~ipeg~WlCd~C~~~ 751 (1113)
++.+++..|.||.+ .+.||.||.|..++|..|++.+ .+|++.|+|..|...
T Consensus 6 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44566789999987 4789999999999999999974 578999999999864
No 13
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=6e-07 Score=83.51 Aligned_cols=54 Identities=24% Similarity=0.587 Sum_probs=45.1
Q ss_pred CCCCCCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccc
Q 001260 697 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 751 (1113)
Q Consensus 697 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 751 (1113)
....++..|.||..... .+.||.||+|...+|..|++ +..+|.+.|+|..|...
T Consensus 11 ~~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 33455678999998643 57899999999999999999 55688999999999874
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.18 E-value=7.5e-07 Score=76.36 Aligned_cols=48 Identities=31% Similarity=0.883 Sum_probs=41.7
Q ss_pred CCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCccccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 752 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~ 752 (1113)
++..|.||.+ .+.||.|++|..++|..|++ +..+|.+.|+|..|....
T Consensus 4 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCC----CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCC----CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4678999987 36899999999999999999 556789999999998753
No 15
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=76.99 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=39.7
Q ss_pred CCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 751 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 751 (1113)
...|.||.+ ++.||.||+|..+||.+|+. +..+|++.|+|..|+..
T Consensus 12 ~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456999986 46799999999999999996 44688999999999865
No 16
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.13 E-value=1.6e-06 Score=80.04 Aligned_cols=52 Identities=25% Similarity=0.738 Sum_probs=44.7
Q ss_pred cCCCCCCCcCcccCCCCCCCCCeEEccccCcccccccc--cCcccCCCcccccccccc
Q 001260 696 DFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 696 e~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CY--Gi~~ipeg~WlCd~C~~~ 751 (1113)
.+..+++..|.||.+ ++.||.||.|..+||..|+ ++..+|+|.|+|..|...
T Consensus 19 ~~~d~n~~~C~vC~~----~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCS----SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCC----CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 355667889999997 3579999999999999999 566789999999999875
No 17
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.11 E-value=4.9e-06 Score=79.28 Aligned_cols=94 Identities=22% Similarity=0.470 Sum_probs=67.4
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCccc--CCCccccccccccccCCCCCCCCCCccCCCccccccccC
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLC 777 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~i--peg~WlCd~C~~~~~~~~s~~~~vn~~~kp~~~~~C~LC 777 (1113)
.++..|.||.+... .+.||.|+.|..++|..|.++... +.+.|+|..|. .|.+|
T Consensus 5 ~~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~-----------------------~C~~C 60 (111)
T 2ysm_A 5 SSGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK-----------------------VCQNC 60 (111)
T ss_dssp CCCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC-----------------------CCTTT
T ss_pred CCCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC-----------------------ccccc
Confidence 45678999998532 467899999999999999997654 47899999985 36667
Q ss_pred CCCCC---cceecCCCcceecccccccccceecCCccccccCccccCCCCcccccccC
Q 001260 778 GGTTG---AFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 832 (1113)
Q Consensus 778 p~~gG---ALKrT~~g~WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~ 832 (1113)
...+. .|....-..|.|+.|.-- .+..++...+.|..|..
T Consensus 61 ~~~~~~~~ll~Cd~C~~~yH~~Cl~p---------------pl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 61 KQSGEDSKMLVCDTCDKGYHTFCLQP---------------VMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCSCCTTEEECSSSCCEEEGGGSSS---------------CCSSCCSSCCCCHHHHC
T ss_pred CccCCCCCeeECCCCCcHHhHHhcCC---------------ccccCCCCCcCCcCCcC
Confidence 66543 344445568999999731 12234555677777764
No 18
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.08 E-value=1.9e-06 Score=82.95 Aligned_cols=47 Identities=23% Similarity=0.589 Sum_probs=38.6
Q ss_pred CcCcccCCCCC------CCCCeEEccccCcccccccccCc-----ccCCCcccccccc
Q 001260 703 RSCDICRRSET------ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCE 749 (1113)
Q Consensus 703 ~~CsVC~~~E~------~~N~IV~Cd~C~laVHq~CYGi~-----~ipeg~WlCd~C~ 749 (1113)
..|.+|...+. ..+.||+|++|..++|..|.+.. .++.+.|+|..|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999997541 34699999999999999999976 3567899999884
No 19
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.00 E-value=6.9e-06 Score=78.72 Aligned_cols=92 Identities=23% Similarity=0.572 Sum_probs=65.0
Q ss_pred CcCcccCCCCC-----CCCCeEEccccCcccccccccCc-----ccCCCccccccccccccCCCCCCCCCCccCCCcccc
Q 001260 703 RSCDICRRSET-----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVA 772 (1113)
Q Consensus 703 ~~CsVC~~~E~-----~~N~IV~Cd~C~laVHq~CYGi~-----~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~kp~~~~ 772 (1113)
.+|.+|...+. ..+.||.|++|+..+|..|++.. .++.+.|+|..|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~----------------------- 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK----------------------- 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC-----------------------
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC-----------------------
Confidence 57999987542 34689999999999999999863 3568899999996
Q ss_pred ccccCCCCC---Ccc-eecCCCcceecccccccccceecCCccccccCccccCCCCcccccccC
Q 001260 773 ECSLCGGTT---GAF-RKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 832 (1113)
Q Consensus 773 ~C~LCp~~g---GAL-KrT~~g~WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~ 832 (1113)
.|.+|...+ +.| ....-..+.|+.|.. | .+..++...+.|..|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~--p-------------~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCD--P-------------PLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCS--S-------------CCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCC--C-------------CCCCCCCCCeECCCCCC
Confidence 266666533 223 333445899999963 1 12345566688888864
No 20
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=4.1e-06 Score=75.59 Aligned_cols=46 Identities=35% Similarity=0.828 Sum_probs=40.1
Q ss_pred cCcccCCCCCCCCCeEEccccCccccccccc--CcccCCC-ccccccccc
Q 001260 704 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 750 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg-~WlCd~C~~ 750 (1113)
.|.||...+. .+.||.||+|..++|+.|++ +..+|.| .|+|..|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7999997543 68999999999999999999 4568888 999999964
No 21
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.87 E-value=6e-06 Score=73.14 Aligned_cols=46 Identities=26% Similarity=0.834 Sum_probs=39.3
Q ss_pred cCcccCCCCCCCCCeEEccccCccccccccc--CcccCCC-ccccccccc
Q 001260 704 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 750 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg-~WlCd~C~~ 750 (1113)
.|.||+..+. ++.||.||+|..++|..|++ +..+|.| .|+|..|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778887543 68999999999999999999 5567888 999999975
No 22
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.84 E-value=1.3e-05 Score=71.15 Aligned_cols=49 Identities=22% Similarity=0.763 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCeEEccc--cC-cccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
++..+| ||+..+. +.||.||+ |. -.||..|+|+...|.+.|+|..|...
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 445778 8998653 67999999 77 48999999999999999999999865
No 23
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.80 E-value=8.9e-06 Score=73.44 Aligned_cols=46 Identities=26% Similarity=0.832 Sum_probs=38.0
Q ss_pred cCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCc-cccccccc
Q 001260 704 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGP-WYCELCEE 750 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~-WlCd~C~~ 750 (1113)
.|.||...+. .+.||.||+|..++|..|++ +..+|.+. |+|..|++
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777776543 57899999999999999999 45678888 99999975
No 24
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.75 E-value=9.1e-06 Score=78.15 Aligned_cols=50 Identities=38% Similarity=0.882 Sum_probs=42.2
Q ss_pred CcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccccc
Q 001260 703 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 753 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~~ 753 (1113)
..|.||+..+. .+.||.||+|..++|..|++ +..+|++.|+|..|.....
T Consensus 59 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 46899987543 68999999999999999999 5568899999999987543
No 25
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.71 E-value=1.9e-05 Score=81.52 Aligned_cols=50 Identities=26% Similarity=0.728 Sum_probs=41.8
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 753 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~~ 753 (1113)
+++..|.||.+ ++.||.||+|..++|..|.+ ...+|.|.|+|..|.....
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35678999986 46799999999999999995 4467899999999987643
No 26
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.69 E-value=1.7e-05 Score=73.55 Aligned_cols=50 Identities=26% Similarity=0.724 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccC---cccccccccCcccCCCcccccc-ccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCEL-CEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~---laVHq~CYGi~~ipeg~WlCd~-C~~~~ 752 (1113)
++..+| ||...+. +.||.||+|+ --||..|.|+...|.+.|+|.. |....
T Consensus 24 ~~~~yC-iC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp CCSCCS-TTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHH
T ss_pred CCCcEE-EeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchh
Confidence 455678 9998653 5799999977 7899999999999999999999 98653
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.68 E-value=1.4e-05 Score=71.15 Aligned_cols=53 Identities=19% Similarity=0.562 Sum_probs=43.4
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCccc--CCCcccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELLS 753 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~i--peg~WlCd~C~~~~~ 753 (1113)
++...|.||...+. +..||.||+|...+|..|.|++.. +.+.|+|..|.....
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999998653 568999999999999999998754 358999999987643
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.68 E-value=1.1e-05 Score=69.31 Aligned_cols=47 Identities=23% Similarity=0.822 Sum_probs=39.7
Q ss_pred CCCcCcccCCCCCCCCCeEEccc--cC-cccccccccCcccCCCccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 750 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~ 750 (1113)
+...| ||++.+ .+.||.||+ |. -.+|..|+|+...|.+.|+|..|..
T Consensus 9 e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34667 999865 368999999 65 6899999999999999999999974
No 29
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.65 E-value=2.3e-05 Score=82.35 Aligned_cols=49 Identities=24% Similarity=0.710 Sum_probs=41.4
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccC--cccCCCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN--AKESTGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi--~~ipeg~WlCd~C~~~~ 752 (1113)
+++..|.||.+ ++.||.||+|..++|..|++. ..+|.|.|+|..|....
T Consensus 5 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45678999986 356999999999999999964 46789999999998753
No 30
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.63 E-value=1.5e-05 Score=68.39 Aligned_cols=47 Identities=23% Similarity=0.810 Sum_probs=40.0
Q ss_pred CCCcCcccCCCCCCCCCeEEccc--cC-cccccccccCcccCCCccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 750 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~ 750 (1113)
+...| ||++.+ .+.||.||+ |. -.+|..|.|+...|.+.|+|..|..
T Consensus 8 e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44667 999865 367999999 77 4999999999999999999999975
No 31
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.60 E-value=7.5e-05 Score=69.48 Aligned_cols=50 Identities=22% Similarity=0.734 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCCeEEccc--cC-cccccccccCcccCCCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~~ 752 (1113)
++..+| ||++.+. +.||.||+ |. --||..|.|+...|.+.|+|..|....
T Consensus 34 ~e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 455677 9998653 57999999 66 589999999999999999999998753
No 32
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.60 E-value=3.2e-05 Score=74.08 Aligned_cols=50 Identities=24% Similarity=0.806 Sum_probs=41.3
Q ss_pred CCCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 750 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 750 (1113)
+-.+|.||++.....+.||.|+.|..++|..|+. +..+|++.|+|..|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3457999987544467899999999999999995 5578899999999963
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.51 E-value=2.8e-05 Score=67.40 Aligned_cols=49 Identities=24% Similarity=0.750 Sum_probs=40.2
Q ss_pred CCCCcCcccCCCCCCCCCeEEccc--cC-cccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
++..+| ||++.+. +.||.||+ |. --+|..|.|+...|.+.|+|..|...
T Consensus 9 ~e~~yC-~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 345677 9998643 57999999 55 79999999999999999999999753
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.42 E-value=4.7e-05 Score=79.27 Aligned_cols=46 Identities=28% Similarity=0.832 Sum_probs=39.7
Q ss_pred CCcCcccCCCCCCCCCeEEccccCccccccccc--CcccCCCcccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 751 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 751 (1113)
+..|.||++ ++.+|.|++|..++|..|.. +..+|.|.|+|..|...
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 357999986 35799999999999999994 56788999999999875
No 35
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.40 E-value=6.6e-05 Score=80.17 Aligned_cols=47 Identities=26% Similarity=0.815 Sum_probs=36.3
Q ss_pred CcCcccCCCCCCCCCeEEccccCcccccccccC--cccCCC-ccccccccc
Q 001260 703 RSCDICRRSETILNPILICSGCKVAVHLDCYRN--AKESTG-PWYCELCEE 750 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi--~~ipeg-~WlCd~C~~ 750 (1113)
..|.+|+..+. .+.||.||+|..++|..|.+. ..+|.| .|+|..|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 37999987543 689999999999999999994 467888 999999975
No 36
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.40 E-value=0.00011 Score=69.07 Aligned_cols=47 Identities=26% Similarity=0.679 Sum_probs=37.3
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccCcccC-CCccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 750 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip-eg~WlCd~C~~ 750 (1113)
...| ||...+. ++.||.|+.|...+|..|+|++... ...|+|..|..
T Consensus 28 ~vrC-iC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3556 9987543 5789999999999999999986422 34799999974
No 37
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.28 E-value=0.00015 Score=68.99 Aligned_cols=49 Identities=24% Similarity=0.633 Sum_probs=40.7
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccC--cccCCCcccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN--AKESTGPWYCELCEEL 751 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi--~~ipeg~WlCd~C~~~ 751 (1113)
-.+|.||..... .+.||.|+.|..++|..|++. ..+|++.|+|..|..-
T Consensus 54 C~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 54 CKVCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp TCCCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CCcccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 347889987543 578999999999999999984 4578899999999864
No 38
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.21 E-value=0.00027 Score=61.00 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=43.6
Q ss_pred CCCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccC---CCcccccccccc
Q 001260 699 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 751 (1113)
Q Consensus 699 ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~ 751 (1113)
.++..+|.+|......+..||.|+.|..=+|..|.|+...+ ...|+|..|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35668899999865445789999999999999999987643 368999999864
No 39
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00015 Score=64.28 Aligned_cols=49 Identities=22% Similarity=0.649 Sum_probs=40.7
Q ss_pred CCCcCcccCCCCCCCCCeEEccccC---cccccccccCcccCCCccccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCELCEELL 752 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~---laVHq~CYGi~~ipeg~WlCd~C~~~~ 752 (1113)
+..+| +|...+ .+.||.||+|+ .-||..|.|+...|.+.|+|..|....
T Consensus 5 ~~~yC-~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC--CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34567 698864 35899999985 789999999999899999999998653
No 40
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.89 E-value=0.00053 Score=60.69 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=41.4
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCccc--CCCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~i--peg~WlCd~C~~~~ 752 (1113)
+....| ||+..+..+..||.|+.|..=+|..|.|+... ....|+|..|....
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345778 89986543457999999999999999998753 35789999998753
No 41
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.81 E-value=0.00084 Score=59.11 Aligned_cols=49 Identities=22% Similarity=0.654 Sum_probs=40.0
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCccc-CCCccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE-STGPWYCELCEE 750 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~i-peg~WlCd~C~~ 750 (1113)
.+...| ||+..+. +..||.|+.|..=+|..|.|+... ..+.|+|..|..
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345778 9998654 567999999999999999998763 246899999975
No 42
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.77 E-value=0.00079 Score=60.58 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCCeEEcc--ccCcccccccccCcccC-------CCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKES-------TGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd--~C~laVHq~CYGi~~ip-------eg~WlCd~C~~~~ 752 (1113)
+....| ||+..+. ...||.|+ .|..=+|..|+|+...+ ...|+|..|....
T Consensus 14 ~~~~~C-iC~~~~~-~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLE-TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCC-CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCC-CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 355778 8998743 56999999 99999999999998654 3689999998753
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.76 E-value=0.00035 Score=61.08 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=40.7
Q ss_pred CCCcCcccCCCCCCCCCeEEcc-ccCcccccccccCcc--------cCCCcccccccc
Q 001260 701 HPRSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCE 749 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd-~C~laVHq~CYGi~~--------ipeg~WlCd~C~ 749 (1113)
....|.+|..+......+|.|+ .|..=||..|.|+.. .|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3467999999765567899999 999999999999875 367799999996
No 44
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.65 E-value=0.00095 Score=58.54 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=37.9
Q ss_pred CCCcCcccCCCCCCCCCeEEccc--cCcccccccccCcccCC------Ccccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSG--CKVAVHLDCYRNAKEST------GPWYCELCEEL 751 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~--C~laVHq~CYGi~~ipe------g~WlCd~C~~~ 751 (1113)
....| ||+..+. .+.||.|++ |..=+|..|+|+...+. ..|+|..|+..
T Consensus 9 ~~v~C-~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34566 8987543 468999995 99999999999875432 36999999754
No 45
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.57 E-value=0.001 Score=59.86 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccC---CCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~ 752 (1113)
....+| ||.........||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344666 999875446789999999999999999987543 3689999998753
No 46
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.56 E-value=0.00091 Score=59.70 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=41.1
Q ss_pred CCCcCcccCCCCCCCCCeEEccccCcccccccccCcccC-------CCcccccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-------TGPWYCELCEELLS 753 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip-------eg~WlCd~C~~~~~ 753 (1113)
+..+| +|+..+. +..||.|+.|..=+|..|.|+...+ ...|+|..|.....
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 34667 9998654 4689999999999999999987542 47899999987543
No 47
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.28 E-value=0.0016 Score=54.25 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=38.0
Q ss_pred cCcccCCCCCCCCCeEEcc-ccCcccccccccCcccC--CCcccccccc
Q 001260 704 SCDICRRSETILNPILICS-GCKVAVHLDCYRNAKES--TGPWYCELCE 749 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd-~C~laVHq~CYGi~~ip--eg~WlCd~C~ 749 (1113)
.|.+|..+...+..+|.|+ .|..=+|..|.|+...+ ...|+|..|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988765567899999 89999999999997543 4789999984
No 48
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.28 E-value=0.0007 Score=68.95 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCccc---CCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE---STGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~i---peg~WlCd~C~~~ 751 (1113)
++...| +|+.....+..+|.|+.|..-+|..|.|+... ..+.|+|..|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456789 99986544678999999999999999998753 2578999999875
No 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.22 E-value=0.0018 Score=61.50 Aligned_cols=50 Identities=24% Similarity=0.650 Sum_probs=42.0
Q ss_pred CcCcccCCCCCCCCCeEEcc-ccCcccccccccCcc--------cCCCccccccccccc
Q 001260 703 RSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCEELL 752 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd-~C~laVHq~CYGi~~--------ipeg~WlCd~C~~~~ 752 (1113)
..|.+|.......+.+|.|+ .|.-=||..|-|+.. .+++.|+|..|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 56999998754456799998 999999999999875 366899999998753
No 50
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.72 E-value=0.0059 Score=50.78 Aligned_cols=45 Identities=22% Similarity=0.632 Sum_probs=36.9
Q ss_pred CcccCCCCCCCCCeEEccccCcccccccccCcccC-CCccccccccc
Q 001260 705 CDICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 750 (1113)
Q Consensus 705 CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip-eg~WlCd~C~~ 750 (1113)
=.||+..+. +..||.|+.|+.=+|..|.|+...+ ...|+|..|..
T Consensus 6 ~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 348987544 6799999999999999999988643 46899999964
No 51
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.57 E-value=0.0041 Score=62.17 Aligned_cols=47 Identities=21% Similarity=0.635 Sum_probs=40.0
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcc---------cCCCccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK---------ESTGPWYCELCEE 750 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~---------ipeg~WlCd~C~~ 750 (1113)
.++.+|.||.+ ++.|+.||.|..+||..|...+. .|+++|.|..|..
T Consensus 61 g~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35688999987 67899999999999999997432 3789999999975
No 52
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.18 E-value=0.0057 Score=54.56 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=39.4
Q ss_pred cCcccCCCCCCCCCeEEccccCcccccccccCcccC---CCccccccccccc
Q 001260 704 SCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 752 (1113)
Q Consensus 704 ~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~ 752 (1113)
.-+||......+..||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 344998765445789999999999999999998654 2679999998753
No 53
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.35 E-value=0.011 Score=58.37 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=39.2
Q ss_pred CCCcCcccCCCCCCCCCeEEccccCcccccccccCc-------cc--CCCcccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA-------KE--STGPWYCELCEEL 751 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~-------~i--peg~WlCd~C~~~ 751 (1113)
++..|.||.+ +++++.||.|..++|..|.... .+ +.++|.|-.|...
T Consensus 56 ~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4567999987 6889999999999999999632 33 7899999999653
No 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.33 E-value=0.02 Score=67.65 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=40.7
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccCcccCC---Ccccccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKEST---GPWYCELCEELLS 753 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipe---g~WlCd~C~~~~~ 753 (1113)
...| +|+..+..+..||.|+.|..=+|..|.|+...+. +.|+|..|.....
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3455 9998654467899999999999999999986542 5799999987533
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.89 E-value=0.035 Score=57.70 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=37.9
Q ss_pred CcCcccCCCCCCC---CCeEEccccCcccccccccCccc--------C-CCcccccccccc
Q 001260 703 RSCDICRRSETIL---NPILICSGCKVAVHLDCYRNAKE--------S-TGPWYCELCEEL 751 (1113)
Q Consensus 703 ~~CsVC~~~E~~~---N~IV~Cd~C~laVHq~CYGi~~i--------p-eg~WlCd~C~~~ 751 (1113)
.+|.||......+ ..||.||.|..=||..|-|+... | +..|+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4699999864422 35999999999999999998641 2 237999999764
No 56
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=89.49 E-value=0.052 Score=63.41 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=41.1
Q ss_pred CcCcccCCCCCCCCCeEEccccCcccccccccCcccC---CCcccccccccccc
Q 001260 703 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELLS 753 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~~ 753 (1113)
...++|+.....+..||.|+.|..=+|..|.|+...+ .+.|+|..|.....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3467999865446889999999999999999998643 26799999987543
No 57
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.84 E-value=0.17 Score=46.36 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=39.2
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccC---c-----------ccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN---A-----------KESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi---~-----------~ipeg~WlCd~C~~~ 751 (1113)
.+|..|.||...+ .+.++-|+-|+..+|..|..- . -.++..|.|..|.+.
T Consensus 13 ~~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCcccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 3677899998644 478889999999999999832 1 124678999999875
No 58
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.07 E-value=0.4 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=31.3
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
+..||.-|-++|.|+|.|+|.++|+|+++|+.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5678888889999999999999999999999886
No 59
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.04 E-value=0.39 Score=43.02 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=27.6
Q ss_pred CcccccccCc--CCceeecCCCCcccccchhhhhh
Q 001260 824 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
...| +|++. .|.+|+|....|..|||..|.-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEcc
Confidence 4677 89985 79999999989999999999843
No 60
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.98 E-value=0.36 Score=41.34 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=26.1
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
..|.+|++. .+.+|+|. .|..+||..|.-.
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl 39 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCD--LCEMWFHGKCVKI 39 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTC
T ss_pred CCCCCCCCccCCCCCEEEcc--CCCCCCCccccCc
Confidence 579899986 47899999 9999999999844
No 61
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.67 E-value=0.43 Score=43.96 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.2
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
+..||.-|-++|.|+|.|+|.++|+|+++|++-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5678888889999999999999999999999886
No 62
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.39 E-value=0.55 Score=41.64 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=24.4
Q ss_pred CcccccccCc--CCceeecCCCCcccccchhhhh
Q 001260 824 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 824 r~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
...| +|++. .+.+|+|. .|..|||..|.-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEc
Confidence 3566 89986 46899999 899999999984
No 63
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.29 E-value=0.77 Score=42.65 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.0
Q ss_pred CcccccccCc-CCceeecCCCCcc-cccchhhhhh
Q 001260 824 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~-~GA~IqCs~~~C~-~~FHvtCA~~ 856 (1113)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 36 ~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 36 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp CBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC
T ss_pred CcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc
Confidence 3566 99985 6899999966698 7999999863
No 64
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.05 E-value=0.85 Score=40.80 Aligned_cols=28 Identities=36% Similarity=0.896 Sum_probs=24.1
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
..| +|++. .+.+|+|. .|..|||..|.-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 43 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVG 43 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHT
T ss_pred cEE-EcCCccCCCCceEEcC--CCCCcEEeeecC
Confidence 455 99986 58899999 899999999984
No 65
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=81.54 E-value=0.73 Score=44.00 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=27.3
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
...|.+|+. +|-+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~-~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD-GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC-CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC-CCcEeEECCCCCCcccccccCc
Confidence 368999995 6999999988899999999985
No 66
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=81.13 E-value=0.78 Score=54.47 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCeEEccccCcccccccccCcccC---CCcccccccccc
Q 001260 715 LNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 751 (1113)
Q Consensus 715 ~N~IV~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~ 751 (1113)
+..+|.||.|.-=+|..|.|+.... .+.|+|..|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3479999999999999999998643 368999999875
No 67
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.57 E-value=1.1 Score=39.55 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.0
Q ss_pred CcccccccCc-CCceeecCCCCcc-cccchhhhhh
Q 001260 824 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~-~GA~IqCs~~~C~-~~FHvtCA~~ 856 (1113)
...| +|++. .|.+|.|...+|. .+||..|.-.
T Consensus 16 ~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp CCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC
T ss_pred CCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc
Confidence 4567 89985 6899999966698 7999999863
No 68
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=80.52 E-value=2 Score=40.70 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=47.6
Q ss_pred CcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCccccccccccccCCCCCCCCCCccCCCccccccccCCCC--
Q 001260 703 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGT-- 780 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~kp~~~~~C~LCp~~-- 780 (1113)
.+|.+|... .|+.|...+|..|+|.+ .|+|..|....-... .+ + ....|.+|..-
T Consensus 8 ~~C~~C~~~--------~C~~C~~c~~~~~~~~~-----~~~~~~c~~~~~~~~----~~-----~-~~~~c~~c~~c~~ 64 (117)
T 4bbq_A 8 RKCKACVQG--------ECGVCHYCRDMKKFGGP-----GRMKQSCVLRQCLAP----RL-----P-HSVTCSLCGEVDQ 64 (117)
T ss_dssp SCSHHHHSC--------CCSCSHHHHHSGGGTSC-----CCSCCCCGGGCCSSC----BC-----C-TTCBCTTTCCBCC
T ss_pred CcCcCcCCc--------CCCCCCCCcCCcccCCC-----Cccccchhheeeccc----cc-----c-ccccccccCcccc
Confidence 457777763 29999999999998643 699999876432111 00 1 02234444321
Q ss_pred -------CCcce-ecCCCcceecccccccccce
Q 001260 781 -------TGAFR-KSANGQWVHAFCAEWVFEST 805 (1113)
Q Consensus 781 -------gGALK-rT~~g~WVHV~CALW~PEv~ 805 (1113)
...|. ...-..|+|..|.-...+..
T Consensus 65 c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~ 97 (117)
T 4bbq_A 65 NEETQDFEKKLMECCICNEIVHPGCLQMDGEGL 97 (117)
T ss_dssp HHHHCCGGGSCEEETTTCCEECGGGCCSCCCCE
T ss_pred cccccccCcceEEeeecCCeEECCCCCCCcccc
Confidence 11233 34456899999987655544
No 69
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=80.49 E-value=0.82 Score=40.11 Aligned_cols=31 Identities=32% Similarity=0.750 Sum_probs=25.3
Q ss_pred CcccccccCc--CCceeecCCCCcccccchhhhhhc
Q 001260 824 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 824 r~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
...| +|++. ++.+|+|. .|..|||..|.-..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIR 51 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred ceEe-ECCCcCCCCCEEECC--CCCccccccccCcC
Confidence 3577 99986 44799999 89999999998544
No 70
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.92 E-value=0.69 Score=46.75 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.5
Q ss_pred CcCcccCCCC-CCCCCeEEccccCcccccccccCcccCCCcccccccccc
Q 001260 703 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 703 ~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
..|.+|...- ...|.-..|..|...|=+.| |+....++.|+|..|...
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C-~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSC-SHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGG-EECCSSSSSCEEHHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccc-ccccCCCCcEeeHHHHHH
Confidence 5799999863 36788999999999999999 444445788999999865
No 71
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.34 E-value=0.8 Score=40.35 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=26.0
Q ss_pred cccccccCc--CCceeecCCCCcccccchhhhhhc
Q 001260 825 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 825 ~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
..|.+|++. .+.+|.|. .|..+||..|.-..
T Consensus 19 ~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~ 51 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIM 51 (75)
T ss_dssp ECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCS
T ss_pred cCCCCCCCCCCCCCEEEcC--CCCcccccccCCCC
Confidence 579999986 34699999 89999999998543
No 72
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=78.64 E-value=0.84 Score=38.94 Aligned_cols=31 Identities=29% Similarity=0.732 Sum_probs=25.3
Q ss_pred cccccccCc-CCceeecCCCCcc-cccchhhhhh
Q 001260 825 DVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 856 (1113)
Q Consensus 825 ~~C~iC~~~-~GA~IqCs~~~C~-~~FHvtCA~~ 856 (1113)
..| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 10 ~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl 42 (59)
T 3c6w_A 10 TYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDL 42 (59)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred cEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCc
Confidence 456 99984 6899999966698 6999999863
No 73
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.60 E-value=0.78 Score=40.33 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=25.2
Q ss_pred CcccccccCc--CC-ceeecCCCCcccccchhhhhhc
Q 001260 824 IDVCCICRHK--HG-ICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 824 r~~C~iC~~~--~G-A~IqCs~~~C~~~FHvtCA~~a 857 (1113)
...| +|++. .| .+|+|. .|..+||..|.-..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGIN 49 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCC
T ss_pred ceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccC
Confidence 3678 79986 35 699999 89999999998543
No 74
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.46 E-value=0.82 Score=42.71 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=32.1
Q ss_pred cccccccCc--CCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCChh
Q 001260 825 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 882 (1113)
Q Consensus 825 ~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 882 (1113)
..| +|+.. .|.+|+|. .|..+||..|.-..--.+ .+ ..||+.-.+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~~-----p~----~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMGIDRQHI-----PD----TYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTTCCTTSC-----CS----SBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCCCCccCC-----CC----CEECCCCcCC
Confidence 457 78875 68999999 899999999984321111 12 3488877653
No 75
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.46 E-value=1 Score=42.62 Aligned_cols=30 Identities=33% Similarity=0.745 Sum_probs=26.0
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
..|.+|++. .|..|+|. ..|..|||..|.-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVg 36 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTG 36 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCC
Confidence 479999997 57899998 5899999999973
No 76
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=76.09 E-value=1.1 Score=37.91 Aligned_cols=47 Identities=23% Similarity=0.648 Sum_probs=34.8
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCChh
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 882 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 882 (1113)
..|.+|+.. |.+|.|. .|..+||..|....--. ...+.| ||+.....
T Consensus 6 ~~C~vC~~~-g~ll~Cd--~C~~~fH~~Cl~ppl~~----~p~g~W----~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS-GQLLMCD--TCSRVYHLDCLDPPLKT----IPKGMW----ICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC-SSCEECS--SSSCEECGGGSSSCCSS----CCCSCC----CCHHHHHH
T ss_pred CCCcCCCCC-CcEEEcC--CCCcCEECCcCCCCcCC----CCCCce----EChhccCh
Confidence 579999985 8999999 99999999998743111 123455 88877653
No 77
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=75.95 E-value=1.6 Score=38.03 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=24.7
Q ss_pred cccccccCc--CCceeecCCCCcccccchhhh
Q 001260 825 DVCCICRHK--HGICIKCNYGNCQTTFHPTCA 854 (1113)
Q Consensus 825 ~~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA 854 (1113)
..| +|+.. .|.+|+|....|..|||..|.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 456 79874 689999996679999999997
No 78
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.67 E-value=0.96 Score=45.75 Aligned_cols=27 Identities=33% Similarity=0.887 Sum_probs=24.1
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 854 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA 854 (1113)
..| +|++. .|..|+|. .|..|||..|.
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv 38 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCD--RCQNWYHGRCV 38 (174)
T ss_dssp EET-TTTEECCTTSCEEECT--TTCCEEEHHHH
T ss_pred cEe-eCCCCCCCCCCEeECC--CCCchhChhhc
Confidence 578 99986 57799999 99999999998
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=74.52 E-value=1.7 Score=38.00 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=34.2
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
...|.+|+. .|.+|.|. .|...||..|....--.+ ..+.| ||+.-+.
T Consensus 12 ~~~C~vC~~-~~~ll~Cd--~C~~~~H~~Cl~P~l~~~----P~g~W----~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGD-GTDVLRCT--HCAAAFHWRCHFPAGTSR----PGTGL----RCRSCSG 58 (66)
T ss_dssp TCCCTTTSC-CTTCEECS--SSCCEECHHHHCTTTCCC----CSSSC----CCTTTTT
T ss_pred CCCcCCCCC-CCeEEECC--CCCCceecccCCCccCcC----CCCCE----ECccccC
Confidence 357999997 58899999 899999999985432222 33455 7877653
No 80
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=73.70 E-value=0.88 Score=43.17 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=28.1
Q ss_pred CCCeEEccccCcccccccccCcc------cCCCcccccccccc
Q 001260 715 LNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEEL 751 (1113)
Q Consensus 715 ~N~IV~Cd~C~laVHq~CYGi~~------ipeg~WlCd~C~~~ 751 (1113)
...|+.|+.|.-.||..|.++.. ...+.|.|..|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45699999999999999998652 12345999999753
No 81
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=73.67 E-value=1.4 Score=36.46 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=23.9
Q ss_pred ccccccCcC---CceeecCCCCcccccchhhhh
Q 001260 826 VCCICRHKH---GICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 826 ~C~iC~~~~---GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
.|.+|+++. +..|+|.. .|..+||..|+-
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccC
Confidence 478898863 45899996 799999999974
No 82
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=73.66 E-value=1.4 Score=37.66 Aligned_cols=31 Identities=29% Similarity=0.729 Sum_probs=25.0
Q ss_pred cccccccCc-CCceeecCCCCcc-cccchhhhhh
Q 001260 825 DVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 856 (1113)
Q Consensus 825 ~~C~iC~~~-~GA~IqCs~~~C~-~~FHvtCA~~ 856 (1113)
..| +|++. .|.+|.|...+|. .+||..|.-.
T Consensus 11 ~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl 43 (60)
T 2vnf_A 11 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 43 (60)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCC
Confidence 456 89984 6899999955588 8999999863
No 83
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=73.55 E-value=1.3 Score=36.58 Aligned_cols=28 Identities=36% Similarity=0.832 Sum_probs=23.0
Q ss_pred ccccCc--CCceeecCCCCcccccchhhhhhc
Q 001260 828 CICRHK--HGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 828 ~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
.+|++. ++.+|+|. .|..+||..|.-..
T Consensus 7 C~C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECN--ECHTWIHLSCAKIR 36 (52)
T ss_dssp STTCCBCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred EEeCCcCCCCCEEEcC--CCCccccccccCCC
Confidence 478875 46999999 89999999998543
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.53 E-value=1.7 Score=36.33 Aligned_cols=30 Identities=30% Similarity=0.924 Sum_probs=26.5
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
...|.+|+.. |.+|.|. .|..+||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp CCSCSSSCCS-SCCEECS--SSSCEECSSSSSS
T ss_pred CCCCccCCCC-CeEEEcC--CCCcceECccCCC
Confidence 3689999985 8999999 9999999999874
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.50 E-value=1.6 Score=35.69 Aligned_cols=29 Identities=38% Similarity=0.919 Sum_probs=24.6
Q ss_pred ccccccCc--CCceeecCCCCcccccchhhhhh
Q 001260 826 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 826 ~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
.|.+|++. .+.+|.|. .|..+||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCC
Confidence 58999975 35789999 9999999999854
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=72.46 E-value=1.5 Score=37.41 Aligned_cols=30 Identities=30% Similarity=0.860 Sum_probs=26.7
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhhc
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
..|.+|+. .|.+|.|. .|..+||..|....
T Consensus 12 ~~C~vC~~-~g~ll~CD--~C~~~fH~~Cl~p~ 41 (61)
T 2l5u_A 12 DYCEVCQQ-GGEIILCD--TCPRAYHMVCLDPD 41 (61)
T ss_dssp SSCTTTSC-CSSEEECS--SSSCEEEHHHHCTT
T ss_pred CCCccCCC-CCcEEECC--CCChhhhhhccCCC
Confidence 68999998 48999999 99999999998753
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.43 E-value=1.4 Score=38.11 Aligned_cols=30 Identities=37% Similarity=0.909 Sum_probs=26.3
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
...|.+|+.. |.+|.|. .|..+||..|...
T Consensus 8 ~~~C~vC~~~-g~ll~CD--~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG-GELICCD--GCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC-SSCEECS--SCCCEECTTTSSS
T ss_pred CCCCccCCCC-CCEEEcC--CCChhhcccccCC
Confidence 3689999984 8999999 8999999999864
No 88
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=72.13 E-value=2.3 Score=39.51 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=41.6
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHh
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWL 271 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl 271 (1113)
..|+..|.+.| ++++|||...|+|..+|--.|+. ...+++...+|.+.|
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~al 60 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL 60 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 35666666666 99999999999999999999985 579999999998873
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.29 E-value=2.1 Score=37.30 Aligned_cols=29 Identities=34% Similarity=0.760 Sum_probs=24.9
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 854 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA 854 (1113)
..|.+|+++ ....|+|.. .|..+||..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhcc
Confidence 579999996 346899994 99999999997
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=69.83 E-value=1.5 Score=37.39 Aligned_cols=47 Identities=19% Similarity=0.657 Sum_probs=33.6
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
...|.+|+. .|.+|.|. .|...||..|....--. ...+.| ||+.-..
T Consensus 9 ~~~C~vC~~-~g~ll~Cd--~C~~~fH~~Cl~ppl~~----~p~g~W----~C~~C~~ 55 (61)
T 1mm2_A 9 MEFCRVCKD-GGELLCCD--TCPSSYHIHCLNPPLPE----IPNGEW----LCPRCTC 55 (61)
T ss_dssp CSSCTTTCC-CSSCBCCS--SSCCCBCSSSSSSCCSS----CCSSCC----CCTTTTT
T ss_pred CCcCCCCCC-CCCEEEcC--CCCHHHcccccCCCcCc----CCCCcc----CChhhcC
Confidence 367999997 58899999 89999999998643111 123455 7776543
No 91
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=69.29 E-value=2.2 Score=36.78 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=25.8
Q ss_pred cccccccccc-cCceeeCCCCCCC-cccchhhhhh
Q 001260 56 KLVCNICRVK-CGACVRCSHGTCR-TSFHPICARE 88 (1113)
Q Consensus 56 ~LkC~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 88 (1113)
.+.| +|++. .|-.|+|....|. .+||..|.-.
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc
Confidence 3577 89974 6889999966687 9999999864
No 92
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=69.21 E-value=2 Score=39.77 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=24.7
Q ss_pred CcccccccCc-CCceeecCCCCcc-cccchhhhh
Q 001260 824 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCAR 855 (1113)
Q Consensus 824 r~~C~iC~~~-~GA~IqCs~~~C~-~~FHvtCA~ 855 (1113)
...| +|++. .|.+|.|...+|. .+||..|.-
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCccCC
Confidence 3567 99984 6889999955566 899999984
No 93
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=68.53 E-value=6.2 Score=32.45 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1113)
|+..||++..+..++.+++|..+|||+.+|..-.......+..-.+|.++|.
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~ 53 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALG 53 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHC
Confidence 5677899999999999999999999999988776533333333455555553
No 94
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=67.00 E-value=2.9 Score=41.34 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=38.5
Q ss_pred CcCcccCCCCC-CCCCeEEccccCcccccccccCcc--cCCCcccccccccc
Q 001260 703 RSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEEL 751 (1113)
Q Consensus 703 ~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~--ipeg~WlCd~C~~~ 751 (1113)
..|.+|...-+ ..|.-..|..|...|=+.|-+... ..+..|+|..|...
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 57999998653 578889999999999999955332 23567999999875
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.73 E-value=6.4 Score=30.46 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhcccc
Q 001260 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD 256 (1113)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~ 256 (1113)
.+.+|++.| .++.+||.++|||..+|-..|..
T Consensus 13 ~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 13 QISRLLEKG-HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 344567788 89999999999999988766543
No 96
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=66.00 E-value=4 Score=35.22 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=40.7
Q ss_pred cchhhhhhhhcCChhhhhhccccc----cccchhhHHHHHHhhhcccccccc
Q 001260 234 VNVKDIASDIGISPDLLKTTLADG----TFASDLQCKLVKWLSNHAYLGGLL 281 (1113)
Q Consensus 234 v~~~~~a~~~g~s~~~~~a~l~~~----~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1113)
++.+|||...|+|+-+|--.|+.. .++++...+|.+.++..-|.+...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 478999999999999999999843 689999999999999888866543
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=65.83 E-value=3.6 Score=36.38 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=27.0
Q ss_pred CcccccccCcC----CceeecCCCCcccccchhhhhhc
Q 001260 824 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 824 r~~C~iC~~~~----GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
...|.+|+... +.+|.|. .|..+||..|....
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC
Confidence 46899999753 6899999 99999999998654
No 98
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=65.81 E-value=2.1 Score=37.93 Aligned_cols=29 Identities=34% Similarity=0.926 Sum_probs=24.1
Q ss_pred ccccccCc---CCceeecCCCCcccccchhhhhh
Q 001260 826 VCCICRHK---HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 826 ~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
+-++|++. .+.+|+|. .|..+||..|.-.
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~ 42 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECD--ACKDWFHGSCVGV 42 (75)
T ss_dssp EETTTTEECCTTSCEEECT--TTCCEEEHHHHTC
T ss_pred eEEECCCcCCCCCCEEEcC--CCCCCEecccccc
Confidence 44589985 46899999 8999999999843
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=65.05 E-value=2.6 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=26.7
Q ss_pred CcccccccCc----CCceeecCCCCcccccchhhhhh
Q 001260 824 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 824 r~~C~iC~~~----~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
...|.+|+.. .+.+|.|. .|...||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 3689999975 38999999 9999999999765
No 100
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=64.95 E-value=3.9 Score=36.37 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=27.7
Q ss_pred CCCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 701 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 701 ~~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
...+|++|...= ....+-+.|..|++.||..|...
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 346899998642 23568899999999999999864
No 101
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=64.90 E-value=3.8 Score=33.02 Aligned_cols=33 Identities=30% Similarity=0.678 Sum_probs=26.7
Q ss_pred CCcCcccCCCC-CCCCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
..+|++|...= ....+-+.|..|++.+|..|..
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 46799998743 2346889999999999999975
No 102
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=64.70 E-value=7.9 Score=32.00 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=39.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1113)
.+...||++.....++.+++|..+|||+.+|..-.......++.-.+|.+.|
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l 54 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMAL 54 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3677899999999999999999999999998877653333455545555544
No 103
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=64.49 E-value=2.6 Score=51.13 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCcCcccCCCC-CCCCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
..+|++|.+.= +...+-+.|..|++.||..|..
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp ----------------------------------
T ss_pred CCccccccccccccCCceeECCCCCCCcChhhcC
Confidence 46899998742 2345778999999999999974
No 104
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=63.89 E-value=2.8 Score=36.09 Aligned_cols=34 Identities=29% Similarity=0.647 Sum_probs=27.0
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccC
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
...|++|.+.-.-+.+.+.|..|++.+|..|-..
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence 3679999764334578899999999999999643
No 105
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=63.53 E-value=6.8 Score=32.02 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=39.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWL 271 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl 271 (1113)
.+...||++..+..++.+++|..+|||+.+|..-.. ......+.-.+|.+.|
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 57 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 467889999999999999999999999999877665 2333445555665555
No 106
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.00 E-value=7.3 Score=32.94 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=42.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccc--cccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~--~~~~~~~~k~~~wl~ 272 (1113)
.|...||++..+...+.+++|..+|||+.+|..-.... ....+.-.+|.+.|.
T Consensus 7 ~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 7 FVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 57788999999999999999999999999998876532 455566667777664
No 107
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.48 E-value=5.7 Score=35.63 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=30.5
Q ss_pred CCCcCcccCCCCCCCCCeE---EccccCcccccccccCcccCCCcccccccccc
Q 001260 701 HPRSCDICRRSETILNPIL---ICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV---~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
+...|.||++....++.++ .|.+..-.||+.|.-.=....+...|+.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCB
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCe
Confidence 3467999997543455665 22333589999997311111233578888765
No 108
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.69 E-value=4.7 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=27.7
Q ss_pred CCCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 701 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 701 ~~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
...+|++|...= ....+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 346899998742 23468899999999999999864
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=61.39 E-value=3.4 Score=37.96 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=30.2
Q ss_pred cccccccCc-CCceeecCCCCcccccchhhhhhcCceE
Q 001260 825 DVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYL 861 (1113)
Q Consensus 825 ~~C~iC~~~-~GA~IqCs~~~C~~~FHvtCA~~aG~~~ 861 (1113)
..|.||+.- .+..+.|. -|.+.||..|-++.|+.-
T Consensus 16 ~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~ 51 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQ 51 (89)
T ss_dssp CCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCC
T ss_pred cccCccccccccceeccc--cccccccHhhcccccccc
Confidence 589999974 57788899 999999999999988755
No 110
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=61.13 E-value=7.5 Score=31.58 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.||++..+..++.+++|..+|+|+.+|..-+. ......+.-.+|.+.|.
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 54 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36788888889999999999999999987765 33445555667766664
No 111
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.07 E-value=7.7 Score=32.50 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=40.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.++..||++..+..++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 58 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 578889999999999999999999999999877665 33334455556666553
No 112
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.50 E-value=3.4 Score=36.30 Aligned_cols=29 Identities=24% Similarity=0.767 Sum_probs=24.4
Q ss_pred ccccccCc--CCceeecCCCCcccccchhhhhh
Q 001260 826 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 826 ~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
.|.+|++. .|.+|.|. .|...||..|...
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCC
Confidence 57788863 68899999 9999999999863
No 113
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=59.79 E-value=9.6 Score=31.73 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=40.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.++..||++.....++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~ 66 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 66 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999999999877654 33444555566666553
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.61 E-value=3.7 Score=37.60 Aligned_cols=52 Identities=19% Similarity=0.572 Sum_probs=35.5
Q ss_pred cccccccCc----CCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCChh
Q 001260 825 DVCCICRHK----HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 882 (1113)
Q Consensus 825 ~~C~iC~~~----~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 882 (1113)
..|.+|+.. .+.+|.|. .|...||..|....--...+....+.| ||......
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W----~C~~C~~~ 72 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVW----YCARCTRQ 72 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCC----CCHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCe----eCccccch
Confidence 589999986 37899999 899999999975432110001234556 88777654
No 115
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=59.22 E-value=6.4 Score=33.73 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=27.1
Q ss_pred CCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 702 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
..+|++|...= ....+-+.|..|++.+|..|...
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 46899998742 23468899999999999999853
No 116
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=58.83 E-value=6.1 Score=32.10 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=25.4
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccC
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
..+|++|...= . +-+.|..|++.||..|...
T Consensus 14 pt~C~~C~~~l--~-qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 14 LAFCDICQKFL--L-NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CEECTTSSSEE--C-SEEECTTTTCCBCSTTSSS
T ss_pred CcCCCCccccc--c-cCCEeCCCCCeEChhHHhh
Confidence 46899997631 2 7899999999999999864
No 117
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.79 E-value=7.8 Score=33.11 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=39.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
+++..||++..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~ 55 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKG 55 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 367788999999999999999999999999877654 23344455556665553
No 118
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=58.78 E-value=9.8 Score=33.78 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 217 ~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
+...+.-.|+.+++...++..++|..+|||+.+|..-+. ......+.-.+|.+.|.
T Consensus 5 ~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~ 61 (94)
T 2ict_A 5 NHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp TCCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCCChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 345678889999999999999999999999999977765 33455566667766554
No 119
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.69 E-value=8.7 Score=32.28 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
+..-||++.+...++.+++|..+|+|+.+|..-+. ......+.-.+|.+.|.
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 63 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLN 63 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34568888888899999999999999999987765 33445555667777664
No 120
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=58.38 E-value=6.6 Score=31.47 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 750 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~ 750 (1113)
++...|.||++.-..++..+....|+-.+|..|...- ......|..|+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w--~~~~~~CP~Cr~ 51 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW--LGSHSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT--TTTCCSCSSSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHH--HHcCCcCcCCCC
Confidence 3456799999853334456666679999999997311 112334666643
No 121
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=57.94 E-value=7.4 Score=33.75 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=41.2
Q ss_pred CcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhccccccc
Q 001260 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (1113)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (1113)
+++.+|||...|+|.-+|--.|+ ....+++...+|.+.++..-|.+..
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC--
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 58999999999999999999998 3468999999999999998886654
No 122
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=57.59 E-value=4.3 Score=42.10 Aligned_cols=29 Identities=21% Similarity=0.707 Sum_probs=24.3
Q ss_pred cccccccCcC------CceeecCCCCcccccchhhhh
Q 001260 825 DVCCICRHKH------GICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 825 ~~C~iC~~~~------GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
..|.+|++.. +.+|+|. .|..|||..|.-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvg 37 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCEN 37 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSS
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccc
Confidence 4699999852 3499999 999999999983
No 123
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=57.10 E-value=5 Score=34.37 Aligned_cols=34 Identities=29% Similarity=0.666 Sum_probs=27.1
Q ss_pred CCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 702 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
..+|++|.+.= ....+-+.|..|++.+|..|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 46899998742 23468899999999999999853
No 124
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=56.67 E-value=5.6 Score=35.14 Aligned_cols=31 Identities=39% Similarity=0.915 Sum_probs=26.1
Q ss_pred CCcCcccCCCCCCCCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
..+|+.|...= ..+-+.|..|++.+|..|+.
T Consensus 35 pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 35 PGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp CCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 46799998743 56778999999999999985
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.61 E-value=4.3 Score=36.43 Aligned_cols=29 Identities=24% Similarity=0.791 Sum_probs=25.2
Q ss_pred ccccccCc--CCceeecCCCCcccccchhhhhh
Q 001260 826 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 826 ~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
.|.+|++. .|.+|.|. .|...||..|...
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNP 58 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSSS
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccCC
Confidence 68899973 68999999 9999999999863
No 126
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=56.60 E-value=10 Score=32.89 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=42.7
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
..+|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 65 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLE 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 44678899999999999999999999999999877665 34445555566666654
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=55.76 E-value=13 Score=31.35 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=40.1
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALD 63 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 356778999989999999999999999999887665 33444455566666554
No 128
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.50 E-value=4.2 Score=37.55 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=34.9
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
...|.+|+.. |..|.|. .|...||..|....--. .+.+.| ||+....
T Consensus 25 ~~~C~vC~~~-g~LL~CD--~C~~~fH~~Cl~PpL~~----~P~g~W----~C~~C~~ 71 (88)
T 1fp0_A 25 ATICRVCQKP-GDLVMCN--QCEFCFHLDCHLPALQD----VPGEEW----SCSLCHV 71 (88)
T ss_dssp SSCCSSSCSS-SCCEECT--TSSCEECTTSSSTTCCC----CCSSSC----CCCSCCC
T ss_pred CCcCcCcCCC-CCEEECC--CCCCceecccCCCCCCC----CcCCCc----CCccccC
Confidence 3689999985 8899999 99999999998553211 234556 7777764
No 129
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=54.64 E-value=9.8 Score=38.53 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.4
Q ss_pred CcchhhhhhhhcCChhhhhh------cc-------------------------ccccccchhhHHHHHHhhhcccccccc
Q 001260 233 KVNVKDIASDIGISPDLLKT------TL-------------------------ADGTFASDLQCKLVKWLSNHAYLGGLL 281 (1113)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a------~l-------------------------~~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1113)
.+++.+||.++|||..+|-. .+ ...+-.|+++. ++-||+|+ |-..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~le~~~~e~~~~~~~~~k~~~p~~~A-~i~~LKn~---g~~~ 123 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKA-MQLYMQRF---GLLT 123 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSCCHHH-HHHHHHHT---TCCE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHc---Cccc
Confidence 68999999999999988865 21 01223788888 56999997 4444
Q ss_pred cce
Q 001260 282 KNV 284 (1113)
Q Consensus 282 ~~~ 284 (1113)
.+.
T Consensus 124 Dk~ 126 (155)
T 2ao9_A 124 DKK 126 (155)
T ss_dssp EEE
T ss_pred ccc
Confidence 444
No 130
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=54.13 E-value=4.5 Score=41.35 Aligned_cols=29 Identities=31% Similarity=0.903 Sum_probs=25.0
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhh
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
..|.+|+.. |..+.|. .|...||..|...
T Consensus 5 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~C~~p 33 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCE--KCPKVFHLSCHVP 33 (184)
T ss_dssp SSCTTTCCC-SSCEECS--SSSCEECTTTSSS
T ss_pred CccccCCCC-CeeeecC--CCCcccCccccCC
Confidence 479999974 8899999 8999999999643
No 131
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=53.92 E-value=5.8 Score=36.35 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=34.4
Q ss_pred CcccccccCcC----CceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 824 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 824 r~~C~iC~~~~----GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
...|.+|+..+ +.+|.|. .|..+||..|..... .+.+.| ||+.-..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~------vP~g~W----~C~~C~~ 74 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY------IPEGQW----LCRHCLQ 74 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS------CCSSCC----CCHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc------cCCCce----ECccccC
Confidence 46899999742 3899999 999999999986542 234566 8876654
No 132
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.04 E-value=7.6 Score=35.14 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=27.6
Q ss_pred CCCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 701 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 701 ~~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
...+|++|...= ....+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 346899998742 22468899999999999999853
No 133
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=52.93 E-value=6.8 Score=33.70 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCcCcccCCCC-CCCCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
..+|++|...= ....+-+.|..|++.+|..|..
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 46799998743 1246789999999999999975
No 134
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=52.18 E-value=8.7 Score=33.13 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=34.2
Q ss_pred CCCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccC--CCccccccccc
Q 001260 699 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEE 750 (1113)
Q Consensus 699 ke~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ip--eg~WlCd~C~~ 750 (1113)
+++...|.||......++---.|.-|++.+-..|=|-..+. ..-|.|..|..
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567899999865444444467777777766675543333 34699999974
No 135
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=51.76 E-value=15 Score=32.72 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=40.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|...||+|..+..++.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 9 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHC
Confidence 467789999999999999999999999999877654 23334455566666664
No 136
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.47 E-value=4.6 Score=37.30 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=34.3
Q ss_pred cccccccCcC--CceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCChh
Q 001260 825 DVCCICRHKH--GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 882 (1113)
Q Consensus 825 ~~C~iC~~~~--GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 882 (1113)
..|.+|+... +.+|.|. .|..+||..|....--. ...+.| ||+.....
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~----~P~g~W----~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPE----IPRGIW----RCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSS----CCSSCC----CCHHHHHH
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCCCCccc----CCCCCc----CCccCcCc
Confidence 5799999852 4699999 89999999998633211 123455 88877653
No 137
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=51.00 E-value=18 Score=33.55 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=47.3
Q ss_pred CCCcchHHHHHH-HhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhc
Q 001260 216 SDALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (1113)
Q Consensus 216 ~~~~~~~~~lkk-li~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~ 274 (1113)
.+.....-.||+ |.+...++..++|..+|||..+|-.-+. ...++++.-.+|-+.|.-.
T Consensus 9 ~~~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 9 MRPIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 344567888986 8999999999999999999999988876 4567777777887777543
No 138
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.88 E-value=7 Score=34.37 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=24.5
Q ss_pred cccccccCc-CCceeecCCCCc-ccccchhhhhhc
Q 001260 825 DVCCICRHK-HGICIKCNYGNC-QTTFHPTCARSA 857 (1113)
Q Consensus 825 ~~C~iC~~~-~GA~IqCs~~~C-~~~FHvtCA~~a 857 (1113)
..| +|++. .|.+|+|...+| ..+||..|.-..
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~ 40 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGLT 40 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTCS
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCcccccccC
Confidence 455 58874 789999995556 389999998644
No 139
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=50.52 E-value=13 Score=33.64 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001260 206 DRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1113)
++.+..+.+|.-. .--||+|..+...+..++|..+|||+.+|..-........+.-.||.+.|.
T Consensus 13 ~~~~~~~~~M~i~---~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 13 GRENLYFQGMRVS---YNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLN 76 (88)
T ss_dssp -CCCCSCCCEEEE---CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CccchhhccccHH---HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 3444455555332 336788888888999999999999999988776544456666777777775
No 140
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.48 E-value=5.7 Score=35.83 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=38.9
Q ss_pred CCCCcCcccCCCCC-CCCCeEEccccCcccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
+....|.-|...=. ..|.-..|..|...|-+.| ++.. ..+.|+|-.|...
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C-rv~~-~~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC-RIQE-SNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS-EEEC-STTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc-cccC-CCCCEEEeeCchh
Confidence 34567999998543 5788889999999999999 4443 2378999999754
No 141
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=50.33 E-value=12 Score=31.46 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
-||+|..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALN 61 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 47788888889999999999999999888765 44566677777777774
No 142
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=49.96 E-value=5.2 Score=41.69 Aligned_cols=29 Identities=34% Similarity=0.902 Sum_probs=25.1
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhh
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
..|.+|+.. |..|-|. .|...||..|...
T Consensus 8 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 36 (207)
T 3u5n_A 8 DWCAVCQNG-GDLLCCE--KCPKVFHLTCHVP 36 (207)
T ss_dssp SSBTTTCCC-EEEEECS--SSSCEECTTTSSS
T ss_pred CCCCCCCCC-CceEEcC--CCCCccCCccCCC
Confidence 579999974 8889999 8999999999754
No 143
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=49.93 E-value=7.4 Score=32.93 Aligned_cols=32 Identities=38% Similarity=0.856 Sum_probs=26.3
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccC
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
..+|+.|.+.= ..+-+.|..|++.+|..|...
T Consensus 22 pt~C~~C~~~i--~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 22 PGWCDLCGREV--LRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CEECTTTCSEE--CSCCEECTTTSCEECHHHHTT
T ss_pred CeEchhcchhh--hhCccEeCCCCCeEehhhhhh
Confidence 46899997643 467789999999999999853
No 144
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.59 E-value=14 Score=27.91 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
+..|...| .+.++||..+|||..+|..-|
T Consensus 14 i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 14 LDVMKLLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 33456677 799999999999998876543
No 145
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=49.55 E-value=8.5 Score=39.82 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=31.0
Q ss_pred ccccCc---CCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 828 CICRHK---HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 828 ~iC~~~---~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
+||+.. .-..++|. .|.++||..|-+...-.+ .++.+.|.+.|..-++
T Consensus 8 CYCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~----lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 8 VDEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSC----LPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ---CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTC----CTTCCSEEEECTTTST
T ss_pred EEcCCCCCCCceeEeec--cccceecHHHhcccccCc----cccceeEEEEccccCC
Confidence 578874 44688999 899999999997432111 1223457778887665
No 146
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=47.27 E-value=20 Score=30.74 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.8
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 467789999999999999999999999999877654 34555666667766664
No 147
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=46.51 E-value=21 Score=29.46 Aligned_cols=53 Identities=6% Similarity=0.105 Sum_probs=39.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhc--CChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIG--ISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g--~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+..||++..+...+.+++|..+| +|+.+|..-.. ......+.-.+|.+.|.
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYG 63 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 3677899999999999999999999 99998866544 23344455556666554
No 148
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.32 E-value=3.7 Score=36.29 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=27.0
Q ss_pred CCCcCcccCCCCC-CCCCeEEccccCcccccccccC
Q 001260 701 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 701 ~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
...+|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 3478999976321 1357899999999999999863
No 149
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=46.18 E-value=10 Score=33.12 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||.-|.+.|.+++.|||..+|+|..++...|
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777777899999999999999999887665
No 150
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=46.01 E-value=23 Score=30.58 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=42.9
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHhh
Q 001260 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (1113)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl~ 272 (1113)
.+|..-||++-.+..++.+++|..+|||..+|..-... .....+.-.+|.+.|.
T Consensus 9 ~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 9 HMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp TTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 46788899999999999999999999999998877653 4555566667766664
No 151
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=45.95 E-value=20 Score=31.53 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.1
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
..|...||++..+...+..++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~ 66 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIG 66 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3578899999999999999999999999998876554 33445555566766665
No 152
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=45.83 E-value=21 Score=32.22 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=42.9
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
...+...|+++.+...++.+++|..+|||+.+|-.-+. ......+.-.+|.+.|.
T Consensus 16 ~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 71 (104)
T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALG 71 (104)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHC
Confidence 45678889999999999999999999999999887765 33455566666766554
No 153
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=44.90 E-value=12 Score=33.58 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.5
Q ss_pred HHHHHHHhhh------CCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDR------GKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~------gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||.-|-+. |.++|.|||.++|+|+.++..-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3444444445 99999999999999998887665
No 154
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=44.21 E-value=10 Score=34.71 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=25.7
Q ss_pred CCcCcccCCC-CC-CCCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRS-ET-ILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~-E~-~~N~IV~Cd~C~laVHq~CYG 734 (1113)
..+|+||... .. ..-.-+.|.-|+..||..||.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 4689999874 12 223677899999999999985
No 155
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=43.88 E-value=9.8 Score=34.34 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=29.0
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChh-hhhhccc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPD-LLKTTLA 255 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~-~~~a~l~ 255 (1113)
..||.-|-.+|.+++++||.++||++. ++...|.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 456666777999999999999999999 9888763
No 156
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=43.68 E-value=24 Score=30.72 Aligned_cols=54 Identities=7% Similarity=0.185 Sum_probs=41.5
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccc--cccchhhHHHHHHhh
Q 001260 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (1113)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~--~~~~~~~~k~~~wl~ 272 (1113)
..+...||++.++...+..++|..+|||..+|..-+... ....+.-.+|.+.|.
T Consensus 17 ~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~ 72 (83)
T 2a6c_A 17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIG 72 (83)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 345677899999999999999999999999988776532 245555567777665
No 157
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=43.38 E-value=7.9 Score=40.01 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=32.8
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCCh
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 881 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 881 (1113)
..|.+|+.. |..+.|. .|...||..|....--. ...|.| +|+.-..
T Consensus 3 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p~l~~----~p~g~W----~C~~C~~ 48 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCN--QCEFCFHLDCHLPALQD----VPGEEW----SCSLCHV 48 (189)
T ss_dssp CCBTTTCCC-SSCCCCT--TTCCBCCSTTSTTCCSS----CCCTTC----CTTTTSC
T ss_pred CcCccCCCC-CceeECC--CCCchhccccCCCCccc----CCCCCC----CCcCccC
Confidence 479999974 7888999 99999999998643211 123455 6766554
No 158
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=43.32 E-value=7.4 Score=45.51 Aligned_cols=28 Identities=39% Similarity=0.959 Sum_probs=24.6
Q ss_pred ccccccCc---CCceeecCCCCcccccchhhhh
Q 001260 826 VCCICRHK---HGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 826 ~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
..++|++. .|.+|+|. .|..+||..|.-
T Consensus 6 ~yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVg 36 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECD--MCQDWFHGSCVG 36 (447)
T ss_dssp EETTTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred eEEeCCCcCCCCCCeEEcC--CCCcccccccCC
Confidence 56799986 58999999 899999999983
No 159
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.21 E-value=9.2 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=26.0
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhhc
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
..|.+|+. +|..+-|. .|.+.||..|....
T Consensus 64 d~C~vC~~-GG~LlcCD--~Cpr~Fh~~Cl~p~ 93 (142)
T 2lbm_A 64 EQCRWCAE-GGNLICCD--FCHNAFCKKCILRN 93 (142)
T ss_dssp CSCSSSCC-CSSEEECS--SSCCEEEHHHHHHH
T ss_pred CeecccCC-CCcEEeCC--CCCCeeeHhhcCCC
Confidence 58999998 58888898 99999999998644
No 160
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.13 E-value=25 Score=29.93 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=39.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSN 273 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~ 273 (1113)
.++..||++..+...+.+++|..+|||+.+|..-... .....+.-.+|++.|..
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~ 64 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHcc
Confidence 4678899999999999999999999999988776542 22222223555555543
No 161
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=42.77 E-value=23 Score=30.47 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.+...+|++..+...+-+++|..+|||..+|-.-+. ......+.-.+|.+.|.
T Consensus 12 ~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 12 RLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILK 65 (80)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 466788888888889999999999999999887665 33445566667777665
No 162
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=42.64 E-value=2.5 Score=35.97 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=29.6
Q ss_pred CCCCcCcccCCCCCCCCC-eEE--ccccCcccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNP-ILI--CSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~-IV~--Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
++...|-||+.... ++ +.- |.+....||+.|.--=....+.+.|+.|...
T Consensus 4 ~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 34568999997432 33 334 4445559999997421111245677777653
No 163
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=42.48 E-value=11 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.820 Sum_probs=23.2
Q ss_pred CcCcccCCCCCCCCCeEEccccCccccccccc
Q 001260 703 RSCDICRRSETILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 703 ~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
.+|++|...=- . -+.|..|+..+|+.|-.
T Consensus 15 t~C~~C~k~i~-~--G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI-F--GVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC-C--EEEETTTTEEESSSCTT
T ss_pred cCccccCceeE-C--cCCCCCCCCccchhhcC
Confidence 57999986432 2 28999999999999975
No 164
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=42.33 E-value=24 Score=32.37 Aligned_cols=55 Identities=9% Similarity=0.200 Sum_probs=42.8
Q ss_pred CcchHHHHHH-HhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkk-li~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
...+...|++ |......+..++|..+|||+.+|..-+. ......+.-.+|.+.|.
T Consensus 8 ~~~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~ 64 (113)
T 2eby_A 8 PTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFD 64 (113)
T ss_dssp CCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3467888998 8999999999999999999999877665 33455566667766664
No 165
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=42.28 E-value=11 Score=34.09 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCCcch-HHHHHHHhhhC---CcchhhhhhhhcCChhhhhhcc
Q 001260 215 PSDALNF-TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 215 ~~~~~~~-~~~lkkli~~g---kv~~~~~a~~~g~s~~~~~a~l 254 (1113)
+|-+.+. .-||+-|.+.| .+++++||.++|+|.-+|...|
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3334444 56888888899 9999999999999999888886
No 166
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=39.57 E-value=47 Score=30.52 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=39.7
Q ss_pred CcchHHHHHHHhh--hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKKLID--RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkkli~--~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
...|...||+|.. ...++.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 32 ~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 89 (107)
T 2jvl_A 32 GKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLN 89 (107)
T ss_dssp CHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3467889999998 8889999999999999988866543 22333344455555553
No 167
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=39.46 E-value=15 Score=33.75 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.5
Q ss_pred HHHHHHHhhhC-CcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~g-kv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.-||..|+..| ++++.+||.++|+|.-++..+|
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 56788888888 9999999999999999998886
No 168
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=39.35 E-value=9.3 Score=45.13 Aligned_cols=29 Identities=34% Similarity=0.953 Sum_probs=24.3
Q ss_pred cccccccCc---CCceeecCCCCcccccchhhhh
Q 001260 825 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 855 (1113)
Q Consensus 825 ~~C~iC~~~---~GA~IqCs~~~C~~~FHvtCA~ 855 (1113)
...++|++. .|.+|+|. .|..+||..|.-
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECD--ICKDWFHGSCVG 68 (488)
T ss_dssp CEETTTTEECCTTSCEEEBT--TTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcc--CCCCceeeeecC
Confidence 344599985 68899999 899999999983
No 169
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=39.22 E-value=31 Score=31.84 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+.-||+|..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 21 ~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 74 (114)
T 3vk0_A 21 VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALG 74 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 468889999999999999999999999998877654 34556666677777665
No 170
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.91 E-value=29 Score=29.73 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=40.2
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+..||++..+-..+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 357788999888889999999999999988877654 33455555566666553
No 171
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=38.44 E-value=11 Score=33.83 Aligned_cols=30 Identities=23% Similarity=0.744 Sum_probs=23.9
Q ss_pred ccccccCc--CCceeecCCCCcccccchhhhhhc
Q 001260 826 VCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 826 ~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
.|.+|++. .+.+|.|. .|...||..|....
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~Pp 59 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPP 59 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCc
Confidence 36777765 46789999 99999999998643
No 172
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.02 E-value=22 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=26.1
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhhc
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
...|.||....-..+.|. .|...||..|..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKY 46 (74)
T ss_dssp SCBCSSSCCBCSSSEECS--SSCCEECHHHHHHH
T ss_pred CCcCcchhhHcccCCccC--CCCchhhHHHHHHH
Confidence 468999998655557898 99999999999644
No 173
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.61 E-value=17 Score=39.23 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=43.8
Q ss_pred hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhcccccccc
Q 001260 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (1113)
Q Consensus 231 ~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1113)
+++++++|||.+.|+|.-+|--+|+ ....++....||.+-.+..-|.+...
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~ 59 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKI 59 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 5679999999999999999999998 56788999999999999988876543
No 174
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=37.57 E-value=20 Score=33.78 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=39.3
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhccc---c--------------ccccchhhHHHHHHhhhccc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA---D--------------GTFASDLQCKLVKWLSNHAY 276 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~---~--------------~~~~~~~~~k~~~wl~~~~~ 276 (1113)
.||.-|.+.|..++.+||..+|||+-+|.-.|. + -.+.++--..++.||.+|+.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~~ 116 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKK 116 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHHhc
Confidence 467777778999999999999999988866543 1 12344555667777777664
No 175
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=37.03 E-value=34 Score=31.21 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.8
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.|+.-||+|..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 568889999999999999999999999999877654 34555566666666654
No 176
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=37.01 E-value=31 Score=31.10 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHhh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl~ 272 (1113)
|+..||++..+...+..++|..+|||+.+|..-... ...+.+.-.+|.+.|.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~ 55 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 356788999999999999999999999998776543 3445555566766664
No 177
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=36.77 E-value=20 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=24.3
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..+..|..+| .+.++||..+|||+-+|..-|
T Consensus 22 ~~i~~l~~~g-~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 22 SVAHELAKMG-YTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 4455667667 499999999999999887654
No 178
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=36.20 E-value=21 Score=36.71 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHH
Q 001260 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (1113)
Q Consensus 216 ~~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~ 268 (1113)
-+-.+-+..+++|++.| .+..+||..+|.|+-.|...|.=..+.|.+|-.|.
T Consensus 36 L~piE~A~a~~~L~~~G-~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~ 87 (178)
T 1r71_A 36 LTPREIADFIGRELAKG-KKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 87 (178)
T ss_dssp CCHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566789999999997 69999999999999999988876778887776654
No 179
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.95 E-value=33 Score=29.93 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.+.-.||++......+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 17 ~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 70 (92)
T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILK 70 (92)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 345566666678889999999999999998877654 23344455566666664
No 180
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=35.31 E-value=8.5 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=28.4
Q ss_pred CeEEccccCcccccccccCcc--------cC-CCcccccccccc
Q 001260 717 PILICSGCKVAVHLDCYRNAK--------ES-TGPWYCELCEEL 751 (1113)
Q Consensus 717 ~IV~Cd~C~laVHq~CYGi~~--------ip-eg~WlCd~C~~~ 751 (1113)
.||.|+.|.--+|-.|-|+.. .| ...|.|..|...
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 378999999999999999863 24 457999999764
No 181
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.69 E-value=12 Score=40.18 Aligned_cols=29 Identities=24% Similarity=0.767 Sum_probs=22.2
Q ss_pred ccccccCc--CCceeecCCCCcccccchhhhhh
Q 001260 826 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 856 (1113)
Q Consensus 826 ~C~iC~~~--~GA~IqCs~~~C~~~FHvtCA~~ 856 (1113)
.|.+|+.. .|.++.|. .|...||..|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~P 206 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 206 (226)
T ss_dssp SCSSSCCCCC--CCEECS--SSCCEECSCC--C
T ss_pred CCcCCCCCCCCCCeEEcC--CCCcceeCccCCC
Confidence 68999974 68889999 9999999999863
No 182
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=34.59 E-value=25 Score=31.01 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~ 255 (1113)
..||.-|-+.|.+++.+||..+|+|+-++...|.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4567666666699999999999999998876653
No 183
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=34.52 E-value=27 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001260 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1113)
|++|++.-. +..++|..+|||+.+|-.-.....+..+.-.+|.+.|.
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p~~~l~~ia~~l~ 50 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTN 50 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTT
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 566666655 99999999999999987766533344566667777665
No 184
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=34.11 E-value=37 Score=29.72 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1113)
+-+.+.|- +...+..++|..+|||+-+|...+.. -.|.+..+|-+-|
T Consensus 12 ~ri~~~l~-~~glT~~~LA~~~Gvs~stls~~~~~--~~p~~~~~IA~aL 58 (74)
T 1neq_A 12 ADVIAGLK-KRKLSLSALSRQFGYAPTTLANALER--HWPKGEQIIANAL 58 (74)
T ss_dssp HHHHHHHH-TTSCCHHHHHHHHSSCHHHHHHTTTS--SCHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHcC--CCccHHHHHHHHH
Confidence 44444444 55589999999999999999988754 2365554554444
No 185
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.62 E-value=24 Score=39.84 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=29.5
Q ss_pred CCCCCcCcccCCCC-CCCCCeEEccccCccccccccc
Q 001260 699 KEHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 699 ke~~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYG 734 (1113)
.....+|.+|...= +..++-..|..|+..||..|.+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 34567899999753 3467899999999999999986
No 186
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=33.19 E-value=13 Score=34.02 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=26.4
Q ss_pred CCcCcccCCCC-CCCCC--eEEccccCccccccccc
Q 001260 702 PRSCDICRRSE-TILNP--ILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E-~~~N~--IV~Cd~C~laVHq~CYG 734 (1113)
..+|+.|...= ....+ -+.|..|++.||..|..
T Consensus 35 PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 35 PTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp CEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 46899998742 22455 89999999999999986
No 187
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=32.58 E-value=23 Score=36.53 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD 256 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~ 256 (1113)
..||..|-+.|.|++.|+|..+|+|++++.--|.+
T Consensus 15 ~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~e 49 (190)
T 4a0z_A 15 EAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTY 49 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHH
Confidence 57888899999999999999999999999988753
No 188
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.41 E-value=8.4 Score=35.77 Aligned_cols=49 Identities=22% Similarity=0.549 Sum_probs=38.2
Q ss_pred CCcCcccCCCC--C-CCCCeEEccccCcccccccccCcccCCCcccccccccc
Q 001260 702 PRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 702 ~~~CsVC~~~E--~-~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
..+|.||.+.- + +++..|-|..|.+.|-..||-- ...+|.-.|..|...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY-ErkeG~q~CpqCktr 67 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY-ERREGTQNCPQCKTR 67 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH-HHHTSCSSCTTTCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHH-HHhccCccccccCCc
Confidence 46899999852 2 4678899999999999999942 234777889999764
No 189
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=32.41 E-value=22 Score=40.54 Aligned_cols=34 Identities=24% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCCCcCcccCCCCCCCC--CeEEcc--ccCcccccccc
Q 001260 700 EHPRSCDICRRSETILN--PILICS--GCKVAVHLDCY 733 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N--~IV~Cd--~C~laVHq~CY 733 (1113)
+....|.||...-...+ +-..|+ .|+-.+|..|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL 343 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCL 343 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHH
Confidence 34567999997543223 346899 79999999997
No 190
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.35 E-value=18 Score=38.84 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=31.5
Q ss_pred CCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCccccccccc
Q 001260 702 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 750 (1113)
Q Consensus 702 ~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~ 750 (1113)
-..|.+|..--. +-+.|..|+..+|..|+..-....+.-.|..|..
T Consensus 180 i~~C~iC~~iv~---~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS---SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHh---CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 467999987433 2389999999999999853222223345777755
No 191
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.32 E-value=40 Score=30.81 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=43.0
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.-.|..-||+|..+...+.+++|..+|||+.+|-.-.. ......+.-.+|.+.|.
T Consensus 7 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~ 62 (114)
T 3op9_A 7 QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFH 62 (114)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 34578889999999999999999999999999887654 33445555667777664
No 192
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=32.29 E-value=25 Score=41.90 Aligned_cols=36 Identities=22% Similarity=0.544 Sum_probs=29.4
Q ss_pred CCCCcCcccCCCC-CCCCCeEEccccCcccccccccC
Q 001260 700 EHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 735 (1113)
Q Consensus 700 e~~~~CsVC~~~E-~~~N~IV~Cd~C~laVHq~CYGi 735 (1113)
.....|++|...= +...+-..|..|++.||..|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 4567899998742 34578899999999999999874
No 193
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.96 E-value=13 Score=31.89 Aligned_cols=49 Identities=16% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
++...|.||++.-. ....+..-.|+-.||..|...-. .....|..|...
T Consensus 21 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~--~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWL--KANRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHH--HHCSSCTTTCCC
T ss_pred CCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHH--HcCCcCcCcCCc
Confidence 34578999997422 23344445699999999974210 112357777654
No 194
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=30.79 E-value=43 Score=30.79 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=43.7
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhc
Q 001260 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (1113)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~ 274 (1113)
..|+..||++..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.=.
T Consensus 27 ~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~ 83 (117)
T 3f52_A 27 EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGAS 83 (117)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 3578889999999999999999999999999877654 3345666667777766533
No 195
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.56 E-value=24 Score=30.22 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHhhhC-CcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~g-kv~~~~~a~~~g~s~~~~~a~l 254 (1113)
-||+-|-+.| -+++.+||..+|+|..+|...|
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4777776664 5999999999999988876554
No 196
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.23 E-value=45 Score=33.28 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=41.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
.++..||+|..+...+.+++|..+|||..+|..-.. ....+.+.-.+|.+.|.
T Consensus 11 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~ 64 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 64 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 467889999999999999999999999998877654 33444455566766664
No 197
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=29.75 E-value=31 Score=27.37 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=29.7
Q ss_pred CCCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCccccccccc
Q 001260 701 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 750 (1113)
Q Consensus 701 ~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~ 750 (1113)
....|.||++.-...+..+..-.|+-.||..|...-.. ....|..|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH--HTCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH--cCCcCCCCCC
Confidence 34679999985322345566677999999999742110 1145666654
No 198
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=29.64 E-value=33 Score=36.38 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=41.2
Q ss_pred CCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHH
Q 001260 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (1113)
Q Consensus 217 ~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~ 268 (1113)
+-.+-+..+++|++.| .+..+||..+|+|...|...|.-..+.|+++-.|-
T Consensus 119 ~~~E~a~~~~~l~~~g-~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~ 169 (230)
T 1vz0_A 119 SPVEEARGYQALLEMG-LTQEEVARRVGKARSTVANALRLLQLPPEALEALE 169 (230)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456688899999665 79999999999999999988776677777765543
No 199
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.35 E-value=21 Score=35.17 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=25.7
Q ss_pred cccccccCcCCceeecCCCCcccccchhhhhhc
Q 001260 825 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 825 ~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
..|.+|+. +|..+-|. .|.+.||..|....
T Consensus 58 ~~C~vC~d-GG~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 58 EQCRWCAE-GGNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp SSCTTTCC-CSEEEECS--SSSCEEEHHHHHHH
T ss_pred CcCeecCC-CCeeEecC--CCchhhhHHHhCCC
Confidence 57999998 48888887 99999999999764
No 200
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=29.10 E-value=27 Score=31.69 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.2
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
-||+.|...|..++.++|..+|+|+-++---|
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 47777888999999999999999998876553
No 201
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.98 E-value=35 Score=31.35 Aligned_cols=35 Identities=23% Similarity=0.647 Sum_probs=28.5
Q ss_pred CCeEEccccCc-ccccccccCcccCCCcccccccccc
Q 001260 716 NPILICSGCKV-AVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 716 N~IV~Cd~C~l-aVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
-.||.|..|+. .+|..|..+. .....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~-~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR-PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC-TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc-CCCCCEECCcCccc
Confidence 47999999985 6999997753 34678999999864
No 202
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=28.94 E-value=23 Score=27.88 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred CcchhhhhhhhcCChhhhhhccc
Q 001260 233 KVNVKDIASDIGISPDLLKTTLA 255 (1113)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~ 255 (1113)
|+.|.++|.|+|++++.|-..|.
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~ 24 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFA 24 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 57789999999999998887765
No 203
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.62 E-value=27 Score=33.75 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=28.3
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||+-|-+.|.++.++||.++|+|+.++...|
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887664
No 204
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.21 E-value=25 Score=34.74 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
-||+.|-+.|.+++++||.++|+|+.++..-|
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999988764
No 205
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=27.31 E-value=39 Score=34.95 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=41.8
Q ss_pred cCCCCCCCCCeEEccccCcccccccccCcccCCCccccccccccccCCCCCCCCCCccCCCccccccccCCCCC-Cccee
Q 001260 708 CRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTT-GAFRK 786 (1113)
Q Consensus 708 C~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~kp~~~~~C~LCp~~g-GALKr 786 (1113)
|+..-..+-.+|+|++|..-||..|.+...-+ |... . ......|..|...| .-|++
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~--------~lp~---------~------~fY~F~C~~C~~~g~E~f~R 66 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSS--------CLPF---------M------TNYSFHCNVCHHSGNTYFLR 66 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTT--------CCTT---------C------CSEEEECTTTSTTSSCEEEE
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccC--------cccc---------c------eeEEEEccccCCCCcceeEe
Confidence 54432235689999999999999999744311 1000 0 01255677776544 34555
Q ss_pred cCCCcceec-cccccc
Q 001260 787 SANGQWVHA-FCAEWV 801 (1113)
Q Consensus 787 T~~g~WVHV-~CALW~ 801 (1113)
. .-.|+|+ ..||++
T Consensus 67 ~-~~~w~~v~~laLyN 81 (177)
T 3rsn_A 67 K-QANLKEMCLSALAN 81 (177)
T ss_dssp C-CCCHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHh
Confidence 4 3469998 466666
No 206
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=27.11 E-value=52 Score=26.99 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=24.4
Q ss_pred CcchHHHHHHHhhhCCcc----hhhhhhhhcCChhhhhh
Q 001260 218 ALNFTLILKKLIDRGKVN----VKDIASDIGISPDLLKT 252 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~----~~~~a~~~g~s~~~~~a 252 (1113)
+.+|-+-+..+++.|. + +.+||.++||++.+|..
T Consensus 7 s~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~ 44 (59)
T 2glo_A 7 TPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQK 44 (59)
T ss_dssp CHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHH
Confidence 4566433366777664 7 99999999999877643
No 207
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.08 E-value=50 Score=27.50 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchh-hHHHHHHhhhcc
Q 001260 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDL-QCKLVKWLSNHA 275 (1113)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~-~~k~~~wl~~~~ 275 (1113)
++++|+.|. +-.++|..+|||+.+|-.-. ...|.. ..+|-+.|...+
T Consensus 3 ~~~~i~~~~-tq~~lA~~lGvs~~~Vs~we---~~~p~~~~~~i~~~~~g~v 50 (61)
T 1rzs_A 3 KKDVIDHFG-TQRAVAKALGISDAAVSQWK---EVIPEKDAYRLEIVTAGAL 50 (61)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHCC---SBCCHHHHHHHHHHTTSCS
T ss_pred HHHHHHHcC-CHHHHHHHhCCCHHHHHHHH---hhCCHHHHHHHHHHHCCCc
Confidence 467787775 99999999999999997664 334543 345666655443
No 208
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.00 E-value=35 Score=36.56 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=42.5
Q ss_pred CcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhhccccccc
Q 001260 233 KVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNHAYLGGL 280 (1113)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~~~~~~~~ 280 (1113)
|++++|||.+.|+|.-++--+|+. ...++....||.+-.+..=|.+..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~ 50 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 50 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 589999999999999999999994 468899999999999888887654
No 209
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.76 E-value=31 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHhhhC---CcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~g---kv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.-||.-|-+.| .+++++||.++|+|.-+|...|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 45777778888 9999999999999998887765
No 210
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=26.66 E-value=23 Score=31.39 Aligned_cols=51 Identities=20% Similarity=0.527 Sum_probs=31.3
Q ss_pred CCCCcCcccCCCCCCCCC-eEEccccCcccccccccCcccCCCccccccccccc
Q 001260 700 EHPRSCDICRRSETILNP-ILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 752 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~-IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~ 752 (1113)
++...|.||.+.-...+. ++-| .|+-.+++.|+.... ..+...|..|+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~-~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIR-TDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHT-TSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHH-hcCCCCCCCCCCcc
Confidence 445789999984322222 2234 688888888874221 13567888887653
No 211
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=26.62 E-value=36 Score=31.14 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1113)
+-.-||.|.+ ..+=+++|.++|||.-+|.|-. ...+.|.|..+|-+-|
T Consensus 22 ~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIe-nG~~~PsL~~kIAk~f 69 (83)
T 2l1p_A 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIV-NSTYYANVSAAKCQEF 69 (83)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHH-TCSSCCCCCSHHHHHH
T ss_pred HHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHH-cCCCCCCchHHHHHHH
Confidence 4556888887 7899999999999999997765 5555577777776644
No 212
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.58 E-value=31 Score=33.23 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||+-|-+.|.++..+||.++|+|+.++...|
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888899999999999999999887654
No 213
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=26.37 E-value=31 Score=33.40 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=28.5
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||+-|-+.|.++..+||.++|+|+.++..-|
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887664
No 214
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.25 E-value=1.1e+02 Score=26.13 Aligned_cols=51 Identities=16% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCcccccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 753 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~ 753 (1113)
.....|.||++.-.....++. -.|+-.||..|.-.-. .....|..|.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWL--EQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHH--TTTCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEE-eCCCCeecHHHHHHHH--HcCCcCcCcCCccC
Confidence 345789999974322233222 2588888888863211 22357888876543
No 215
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.20 E-value=31 Score=34.68 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=28.9
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||+.|.+.|.+++.+||.++|+|+.++..-|
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368888888999999999999999999887664
No 216
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.07 E-value=32 Score=37.46 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.8
Q ss_pred hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhcccc-cc
Q 001260 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYL-GG 279 (1113)
Q Consensus 231 ~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~-~~ 279 (1113)
+.+++++|||.+.|+|.-+|--+|+ ....++....||.+-.+..-|. +.
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC----
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999998 4568899999999999988886 54
No 217
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.00 E-value=31 Score=30.65 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=25.1
Q ss_pred ccccccccccCceeeCCCCCCCcccchhhhhh
Q 001260 57 LVCNICRVKCGACVRCSHGTCRTSFHPICARE 88 (1113)
Q Consensus 57 LkC~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 88 (1113)
..|.||+.-.-..+.|. .|...||.-|...
T Consensus 16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp CBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 58999997755678898 9999999999953
No 218
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.49 E-value=62 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=42.6
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
--.|..-||+|......+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLN 65 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 34678889999999999999999999999998866544 33455566667776665
No 219
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.42 E-value=33 Score=33.22 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=28.0
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||+-|.+.|.+++++||.++|+|+.++..-|
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888899999999999999999886654
No 220
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=24.88 E-value=28 Score=31.08 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.0
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||.-|.+ |.+++.+||.++|+|+-++...|
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L 57 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHL 57 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 46766665 99999999999999999887664
No 221
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.59 E-value=56 Score=30.31 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
+..-||+|......+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~ 76 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFN 76 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 44557888888899999999999999998876644 34456666677777775
No 222
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.46 E-value=28 Score=31.72 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.-||.-|-..| .++.+||.++|||..++..-|
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34555555688 999999999999999888765
No 223
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.24 E-value=36 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=27.9
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||..|-+.|..+..++|.++|+|+.++...|
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777777899999999999999999998775
No 224
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.83 E-value=37 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.499 Sum_probs=28.4
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||.-|-+.|.++..+||.++|+|+.++...|
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 367888888899999999999999999886654
No 225
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.63 E-value=82 Score=31.94 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=37.7
Q ss_pred hhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHH----------Hhhhcccccccc
Q 001260 230 DRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVK----------WLSNHAYLGGLL 281 (1113)
Q Consensus 230 ~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~----------wl~~~~~~~~~~ 281 (1113)
.+-..+.++||.++|+|+.-+.|++- ..+++++.--||.+ ||+..-|-|++.
T Consensus 23 ~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~~l~~~P~rg~~~ 85 (156)
T 1dw9_A 23 AKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCID 85 (156)
T ss_dssp HHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHHTTSBCCCCCCS
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHHHHhcCCcCCCCC
Confidence 45678999999999999999999854 66666666556554 666665554443
No 226
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.60 E-value=37 Score=33.26 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.4
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||+-|.+.|.+++++||.++|+|+.++..-|
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 367888888999999999999999998886654
No 227
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=23.59 E-value=45 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=23.5
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhh
Q 001260 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLK 251 (1113)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~ 251 (1113)
+.++-.-.-+|++.| .++.+||.++|||+.+|.
T Consensus 24 s~e~k~~~v~~~~~g-~s~~~iA~~~gIs~sTl~ 56 (87)
T 2elh_A 24 TPRDKIHAIQRIHDG-ESKASVARDIGVPESTLR 56 (87)
T ss_dssp CHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCcCHHHHH
Confidence 456633333455666 899999999999987654
No 228
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.59 E-value=59 Score=28.98 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhh----hhhccc-cccccchhhHHHHHHhh
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDL----LKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~----~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
..-||++..+...+.+++|..+|||+.+ |..-.. ......+.-.+|.+.|.
T Consensus 3 g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~ 58 (98)
T 3lfp_A 3 IRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLK 58 (98)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4568888888899999999999999998 444332 34455566667777665
No 229
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=23.50 E-value=46 Score=29.40 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=30.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~ 255 (1113)
.+...||++..+..++.+++|..+|||..+|..-..
T Consensus 4 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356788999999999999999999999998876554
No 230
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.47 E-value=83 Score=27.43 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=39.1
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001260 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1113)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1113)
|...||++..+-..+.+++|..+|||+.+|-.--. ......+.-.+|.+.|.
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 67 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACE 67 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 68889999999999999999999999988876543 33444455556666554
No 231
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.09 E-value=36 Score=32.74 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
.||+-|-+.|.++.++||..+|+|+.++...|
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47778888899999999999999999887664
No 232
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=22.92 E-value=41 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=37.8
Q ss_pred ceecccccccccceecCCccccccCccccCCCCcccccccCc-CCceeecCCCCcccccchhhhhhc
Q 001260 792 WVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 792 WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~~-~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
-.|-.|+.+-.++.-..-.--++.- .......|.+|+.. .|-.-.|. .|...+|+.||...
T Consensus 18 ~lhe~Ca~lP~~i~Hp~Hp~H~L~L---~~~~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVLHEEHELEL---TRVQVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp HHHHHTSSSCSEECCSTTTTSCEEE---ECCSSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHCS
T ss_pred HHhHHHHcCCceecCCCCCCCccEE---eeCCCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCCC
Confidence 3688888776665432100011110 01113689999986 45556798 89999999999653
No 233
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.05 E-value=46 Score=29.31 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||.-|...|.+++.+||..+|+++-++...|
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 557777878899999999999999999887765
No 234
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=21.82 E-value=44 Score=30.51 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=38.3
Q ss_pred cHhhHhhcccCceeeccCCcccccccccCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhh
Q 001260 21 FAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICARE 88 (1113)
Q Consensus 21 WvHv~CALwiPEv~f~~~~~~epV~~I~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~ 88 (1113)
-.|-.||-+-.++.-.. .-.-++. +... ....|.+|+.. .|....|. .|.-.+|+.||..
T Consensus 18 ~lhe~Ca~lP~~i~Hp~-Hp~H~L~-L~~~----~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVL-HEEHELE-LTRV----QVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALN 78 (89)
T ss_dssp HHHHHTSSSCSEECCST-TTTSCEE-EECC----SSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHC
T ss_pred HHhHHHHcCCceecCCC-CCCCccE-EeeC----CCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCC
Confidence 37999998755554211 1011111 1111 13589999976 56678998 7999999999964
No 235
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.29 E-value=27 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCCcCcccCCCCCCCCCeEEccccCcccccccccCcccCCCcccccccccc
Q 001260 700 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 751 (1113)
Q Consensus 700 e~~~~CsVC~~~E~~~N~IV~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 751 (1113)
+....|.||++.-..++..+. -.|+-.||..|...-. ...-.|..|...
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWL--QKSGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHH--TTTCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHH--HcCCcCcCcCcc
Confidence 445789999974222333333 3499999999963211 112356666543
No 236
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.06 E-value=45 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||+-| .|.+++.+||..+|+|.-+|...|
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3466666 788999999999999999987764
No 237
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.68 E-value=56 Score=29.60 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=29.8
Q ss_pred cchHHHHHHHhhhCCc-------chhhhhhhhcCChhhhhhccc
Q 001260 219 LNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (1113)
Q Consensus 219 ~~~~~~lkkli~~gkv-------~~~~~a~~~g~s~~~~~a~l~ 255 (1113)
..++..++..|..|.. ++.++|.++|+|..+|..+|.
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3456677777777653 899999999999999999873
No 238
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.67 E-value=1e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=37.8
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhhc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNH 274 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~~ 274 (1113)
+.-||.|-.+-..+-+++|..+|||+.+|..--.. ..-.+++ .+|++.|..+
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~-~~l~~~l~~~ 65 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPST-IKLLRVLDKH 65 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHH-HHHHHHHCCC
Confidence 55678888899999999999999999888766442 2233333 3777777644
No 239
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=20.56 E-value=42 Score=30.89 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001260 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1113)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1113)
..||.-|. .|.+++.+||..+|||+-+|...|
T Consensus 28 ~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 28 LQILDLLA-QGERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 34676666 599999999999999999887665
No 240
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.50 E-value=41 Score=35.95 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=26.7
Q ss_pred CcccccccCcCCceeecCCCCcccccchhhhhhc
Q 001260 824 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 857 (1113)
Q Consensus 824 r~~C~iC~~~~GA~IqCs~~~C~~~FHvtCA~~a 857 (1113)
...|.+|+......+.|. .|...||..|....
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKY 211 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHH
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHH
Confidence 368999999766668898 59999999999654
No 241
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=20.45 E-value=45 Score=30.65 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=21.6
Q ss_pred CCcCcccCCCC-C-C------------CCCeEEccccCccccccccc
Q 001260 702 PRSCDICRRSE-T-I------------LNPILICSGCKVAVHLDCYR 734 (1113)
Q Consensus 702 ~~~CsVC~~~E-~-~------------~N~IV~Cd~C~laVHq~CYG 734 (1113)
+..|.||++.- . . ....+.--.|+-.||..|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~ 71 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL 71 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHH
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHH
Confidence 45799998741 1 0 11244466799999999974
No 242
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.24 E-value=54 Score=28.00 Aligned_cols=43 Identities=14% Similarity=-0.075 Sum_probs=31.8
Q ss_pred CCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHH-HHHHhhHHHHhhh
Q 001260 538 SPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCK-AVKTLNQEIDVAR 584 (1113)
Q Consensus 538 ~p~de~e~E~~~~q~~ll~~~~~~~~~~~~lv~e-V~k~l~~e~~~~~ 584 (1113)
.-..|+++|...|+..|...+-.... |... |..+...++.+++
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~----I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFR----IRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHH----HHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHH----HHHHHcCCCcHHHHHHHH
Confidence 34689999999999999998875432 2222 4567778888877
No 243
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.14 E-value=86 Score=31.22 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=39.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cc-cccchhhHHHHHHhh
Q 001260 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DG-TFASDLQCKLVKWLS 272 (1113)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~-~~~~~~~~k~~~wl~ 272 (1113)
.+...||+|..+...+.+++|..+|||..+|-.-.. .. ..+.+.-.||.+.|.
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~ 64 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLG 64 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999999998876654 23 344455556666554
Done!