Query 001261
Match_columns 1112
No_of_seqs 883 out of 5474
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0334 RNA helicase [RNA proc 100.0 7E-122 1E-126 1089.6 55.6 845 203-1112 141-997 (997)
2 KOG0339 ATP-dependent RNA heli 100.0 2E-85 4.4E-90 713.8 33.6 440 407-849 163-603 (731)
3 KOG0331 ATP-dependent RNA heli 100.0 1.2E-77 2.5E-82 683.8 34.9 426 422-850 16-477 (519)
4 KOG0336 ATP-dependent RNA heli 100.0 3.5E-75 7.7E-80 618.9 32.6 437 415-855 160-606 (629)
5 KOG0333 U5 snRNP-like RNA heli 100.0 8.2E-74 1.8E-78 627.5 34.1 407 435-845 213-649 (673)
6 KOG0341 DEAD-box protein abstr 100.0 5.4E-74 1.2E-78 605.9 20.2 451 422-877 125-586 (610)
7 PTZ00110 helicase; Provisional 100.0 9.1E-71 2E-75 664.0 50.3 456 412-874 74-533 (545)
8 KOG0330 ATP-dependent RNA heli 100.0 9.7E-70 2.1E-74 577.7 32.2 364 466-837 60-423 (476)
9 PLN00206 DEAD-box ATP-dependen 100.0 6.4E-66 1.4E-70 620.5 45.9 432 413-848 65-502 (518)
10 KOG0338 ATP-dependent RNA heli 100.0 1.7E-66 3.7E-71 567.3 31.0 374 466-844 180-561 (691)
11 COG0513 SrmB Superfamily II DN 100.0 1.4E-64 2.9E-69 604.4 41.7 363 467-836 29-396 (513)
12 KOG0335 ATP-dependent RNA heli 100.0 5.1E-65 1.1E-69 569.8 31.5 391 455-848 62-471 (482)
13 KOG0328 Predicted ATP-dependen 100.0 2.3E-63 4.9E-68 507.0 27.4 373 463-844 23-396 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 3.6E-62 7.7E-67 535.5 32.7 372 466-841 81-456 (543)
15 KOG0340 ATP-dependent RNA heli 100.0 1.3E-61 2.8E-66 509.9 29.2 366 466-836 6-376 (442)
16 KOG0345 ATP-dependent RNA heli 100.0 1.2E-60 2.6E-65 519.1 33.9 359 467-827 4-370 (567)
17 KOG0326 ATP-dependent RNA heli 100.0 7.1E-62 1.5E-66 503.6 19.1 368 467-844 85-452 (459)
18 PRK04837 ATP-dependent RNA hel 100.0 2.3E-59 4.9E-64 553.8 41.6 369 465-837 6-378 (423)
19 KOG0343 RNA Helicase [RNA proc 100.0 3.2E-60 6.9E-65 522.3 31.2 363 465-832 67-434 (758)
20 PRK04537 ATP-dependent RNA hel 100.0 1.2E-58 2.6E-63 560.3 42.0 369 465-836 7-379 (572)
21 PRK10590 ATP-dependent RNA hel 100.0 3.2E-58 7E-63 547.4 41.8 365 468-836 2-367 (456)
22 PRK11634 ATP-dependent RNA hel 100.0 3E-58 6.6E-63 559.2 42.3 363 466-837 5-368 (629)
23 KOG0348 ATP-dependent RNA heli 100.0 3E-59 6.6E-64 513.4 29.9 368 463-832 132-565 (708)
24 PRK11776 ATP-dependent RNA hel 100.0 7.3E-58 1.6E-62 546.8 41.8 359 467-835 4-363 (460)
25 KOG0347 RNA helicase [RNA proc 100.0 1.2E-58 2.5E-63 510.2 22.5 373 463-837 177-586 (731)
26 KOG0346 RNA helicase [RNA proc 100.0 1.6E-57 3.4E-62 490.1 29.7 367 467-835 19-424 (569)
27 PRK11192 ATP-dependent RNA hel 100.0 2.6E-56 5.6E-61 530.2 42.9 362 468-834 2-365 (434)
28 PRK01297 ATP-dependent RNA hel 100.0 7.8E-55 1.7E-59 522.0 44.0 369 465-837 85-458 (475)
29 PTZ00424 helicase 45; Provisio 100.0 5.6E-53 1.2E-57 497.8 40.8 368 465-841 26-394 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 8.8E-53 1.9E-57 445.4 29.2 372 464-846 87-470 (477)
31 KOG0337 ATP-dependent RNA heli 100.0 5.3E-54 1.1E-58 461.0 19.7 363 466-835 20-382 (529)
32 KOG0344 ATP-dependent RNA heli 100.0 2.9E-53 6.4E-58 476.5 26.5 402 445-848 110-522 (593)
33 KOG0327 Translation initiation 100.0 1.1E-52 2.3E-57 450.6 24.7 368 466-844 25-393 (397)
34 KOG4284 DEAD box protein [Tran 100.0 1.1E-51 2.4E-56 460.8 23.0 351 463-823 21-381 (980)
35 KOG0350 DEAD-box ATP-dependent 100.0 5.5E-49 1.2E-53 430.4 29.3 377 475-858 145-582 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 5.1E-48 1.1E-52 478.8 39.5 348 473-835 20-402 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 5.5E-47 1.2E-51 462.7 37.8 343 468-830 436-796 (1195)
38 TIGR00580 mfd transcription-re 100.0 7E-46 1.5E-50 462.7 35.1 367 475-896 437-818 (926)
39 PRK10689 transcription-repair 100.0 9.5E-46 2.1E-50 470.9 35.9 367 477-897 589-968 (1147)
40 KOG0924 mRNA splicing factor A 100.0 1.8E-47 3.8E-52 429.0 15.9 496 247-821 168-697 (1042)
41 TIGR00614 recQ_fam ATP-depende 100.0 5.1E-45 1.1E-49 435.5 36.5 328 484-831 6-343 (470)
42 PRK10917 ATP-dependent DNA hel 100.0 1.4E-43 3.1E-48 437.9 36.9 360 479-897 252-633 (681)
43 PRK11057 ATP-dependent DNA hel 100.0 3.5E-43 7.6E-48 430.1 38.3 331 476-830 11-352 (607)
44 TIGR00643 recG ATP-dependent D 100.0 5E-43 1.1E-47 430.6 35.5 364 476-897 223-610 (630)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.7E-43 2.1E-47 421.5 34.8 317 485-820 12-390 (844)
46 PRK13767 ATP-dependent helicas 100.0 1.7E-42 3.7E-47 438.0 37.1 343 474-820 18-397 (876)
47 PRK02362 ski2-like helicase; P 100.0 1.7E-42 3.6E-47 434.8 36.5 371 468-858 2-436 (737)
48 TIGR01389 recQ ATP-dependent D 100.0 4.7E-42 1E-46 421.8 35.1 326 481-830 4-340 (591)
49 KOG0329 ATP-dependent RNA heli 100.0 1.3E-43 2.8E-48 357.3 14.5 334 466-843 41-378 (387)
50 PRK00254 ski2-like helicase; P 100.0 4E-41 8.7E-46 421.3 35.8 338 468-822 2-389 (720)
51 PRK01172 ski2-like helicase; P 100.0 5.1E-39 1.1E-43 400.9 34.1 334 468-821 2-378 (674)
52 PHA02653 RNA helicase NPH-II; 100.0 5.1E-39 1.1E-43 388.5 31.4 310 492-822 167-515 (675)
53 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.8E-38 3.8E-43 392.7 32.2 303 493-822 6-337 (819)
54 PRK09401 reverse gyrase; Revie 100.0 2.2E-38 4.8E-43 404.5 33.1 297 485-807 77-430 (1176)
55 KOG0349 Putative DEAD-box RNA 100.0 9.9E-40 2.2E-44 350.1 15.5 317 541-860 287-686 (725)
56 COG1200 RecG RecG-like helicas 100.0 5.3E-38 1.2E-42 363.3 30.8 362 478-898 252-636 (677)
57 COG1201 Lhr Lhr-like helicases 100.0 1.5E-37 3.3E-42 374.2 33.5 343 473-820 7-361 (814)
58 PRK09751 putative ATP-dependen 100.0 1.1E-37 2.5E-42 397.6 33.7 307 509-819 1-383 (1490)
59 PRK11664 ATP-dependent RNA hel 100.0 6.2E-38 1.3E-42 389.0 30.5 305 493-822 9-340 (812)
60 COG0514 RecQ Superfamily II DN 100.0 2.4E-37 5.2E-42 360.2 30.9 328 480-832 7-348 (590)
61 PRK14701 reverse gyrase; Provi 100.0 1.2E-37 2.6E-42 404.8 30.7 322 477-822 67-457 (1638)
62 PRK12898 secA preprotein trans 100.0 3.2E-37 6.9E-42 366.5 31.0 322 485-823 100-588 (656)
63 COG1197 Mfd Transcription-repa 100.0 6.9E-36 1.5E-40 363.4 32.6 368 476-897 581-962 (1139)
64 TIGR01587 cas3_core CRISPR-ass 100.0 5.4E-36 1.2E-40 347.6 28.2 304 506-823 1-338 (358)
65 TIGR01054 rgy reverse gyrase. 100.0 1.7E-35 3.7E-40 378.7 33.4 291 479-794 68-410 (1171)
66 PRK09200 preprotein translocas 100.0 2.7E-35 5.9E-40 357.2 31.8 324 485-824 75-544 (790)
67 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-35 5.5E-40 353.8 31.2 301 487-812 112-443 (501)
68 TIGR03714 secA2 accessory Sec 100.0 6.4E-35 1.4E-39 350.3 32.2 321 491-824 70-540 (762)
69 TIGR00963 secA preprotein tran 100.0 2.5E-34 5.4E-39 342.9 31.3 324 485-825 53-521 (745)
70 COG1111 MPH1 ERCC4-like helica 100.0 7E-33 1.5E-37 307.8 36.6 322 486-821 12-481 (542)
71 COG1202 Superfamily II helicas 100.0 2.6E-34 5.6E-39 319.1 23.7 337 468-821 195-553 (830)
72 PRK11131 ATP-dependent RNA hel 100.0 9.2E-34 2E-38 355.8 27.8 299 493-823 78-413 (1294)
73 PRK13766 Hef nuclease; Provisi 100.0 2.3E-32 5E-37 347.5 37.3 324 486-822 12-480 (773)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 2.7E-32 5.9E-37 313.6 31.9 292 493-806 1-357 (357)
75 KOG0352 ATP-dependent DNA heli 100.0 6.7E-33 1.4E-37 298.0 23.2 334 477-831 6-372 (641)
76 KOG0351 ATP-dependent DNA heli 100.0 6.5E-33 1.4E-37 341.1 26.4 330 483-831 258-602 (941)
77 COG1204 Superfamily II helicas 100.0 1.5E-32 3.2E-37 336.7 29.2 332 473-819 15-406 (766)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8E-33 1.7E-37 348.9 27.2 303 496-823 74-406 (1283)
79 COG1205 Distinct helicase fami 100.0 4.5E-31 9.7E-36 328.2 32.5 337 474-819 55-420 (851)
80 KOG0354 DEAD-box like helicase 100.0 3.7E-31 8E-36 311.2 27.6 324 486-822 59-530 (746)
81 TIGR00603 rad25 DNA repair hel 100.0 3.1E-30 6.8E-35 310.3 30.4 319 488-833 254-621 (732)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 3.4E-30 7.4E-35 304.3 28.6 363 484-858 105-525 (1230)
83 PRK04914 ATP-dependent helicas 100.0 7.6E-29 1.6E-33 308.5 37.6 355 488-859 151-644 (956)
84 KOG0353 ATP-dependent DNA heli 100.0 5.6E-30 1.2E-34 271.0 21.4 342 471-829 75-475 (695)
85 PRK05580 primosome assembly pr 100.0 1.2E-28 2.6E-33 303.9 35.3 309 489-820 144-548 (679)
86 PRK09694 helicase Cas3; Provis 100.0 8.1E-28 1.8E-32 297.7 36.4 314 485-810 282-664 (878)
87 KOG0923 mRNA splicing factor A 100.0 2.1E-29 4.6E-34 284.1 19.6 309 491-821 267-606 (902)
88 PRK13104 secA preprotein trans 100.0 1.2E-27 2.6E-32 289.3 33.6 321 485-824 79-590 (896)
89 KOG0922 DEAH-box RNA helicase 100.0 5.3E-29 1.2E-33 285.6 20.5 309 492-823 54-392 (674)
90 PRK12899 secA preprotein trans 100.0 1.2E-27 2.5E-32 288.3 32.8 183 436-630 32-228 (970)
91 cd00268 DEADc DEAD-box helicas 100.0 7.5E-28 1.6E-32 256.4 24.6 202 469-676 1-202 (203)
92 PRK12906 secA preprotein trans 100.0 5.6E-27 1.2E-31 282.6 32.1 323 485-824 77-556 (796)
93 COG1643 HrpA HrpA-like helicas 100.0 4.4E-28 9.5E-33 295.1 21.8 308 492-822 53-388 (845)
94 KOG0951 RNA helicase BRR2, DEA 100.0 2.4E-27 5.2E-32 282.8 26.0 361 485-858 305-736 (1674)
95 PRK12904 preprotein translocas 100.0 9.3E-27 2E-31 281.8 30.9 323 485-824 78-576 (830)
96 TIGR00595 priA primosomal prot 100.0 1.2E-26 2.5E-31 276.5 30.0 288 508-818 1-378 (505)
97 COG1061 SSL2 DNA or RNA helica 99.9 1.6E-26 3.4E-31 272.4 26.6 292 488-807 35-375 (442)
98 PRK13107 preprotein translocas 99.9 4E-25 8.7E-30 266.5 26.7 322 485-823 79-593 (908)
99 PLN03142 Probable chromatin-re 99.9 1.7E-24 3.6E-29 270.5 31.8 327 489-831 169-611 (1033)
100 PRK11448 hsdR type I restricti 99.9 1.2E-24 2.7E-29 277.1 29.6 306 488-809 412-801 (1123)
101 KOG0926 DEAH-box RNA helicase 99.9 4.2E-25 9.1E-30 253.5 17.6 306 495-821 262-704 (1172)
102 COG4098 comFA Superfamily II D 99.9 2.4E-23 5.3E-28 220.2 28.7 299 489-818 97-413 (441)
103 KOG0947 Cytoplasmic exosomal R 99.9 7.7E-24 1.7E-28 247.8 25.7 320 485-833 294-734 (1248)
104 KOG0948 Nuclear exosomal RNA h 99.9 2.5E-24 5.3E-29 246.1 18.1 308 489-821 129-539 (1041)
105 COG4581 Superfamily II RNA hel 99.9 2.3E-23 4.9E-28 255.0 26.0 315 483-820 114-536 (1041)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-23 4.3E-28 215.3 19.4 165 491-664 1-168 (169)
107 KOG0950 DNA polymerase theta/e 99.9 3.6E-23 7.8E-28 244.9 21.6 342 473-830 206-620 (1008)
108 KOG0920 ATP-dependent RNA heli 99.9 2E-22 4.3E-27 244.4 25.2 313 490-821 174-544 (924)
109 KOG0385 Chromatin remodeling c 99.9 3.4E-22 7.4E-27 230.0 25.6 315 488-821 166-599 (971)
110 KOG0925 mRNA splicing factor A 99.9 1.4E-22 3E-27 222.2 19.8 329 465-821 23-387 (699)
111 TIGR00631 uvrb excinuclease AB 99.9 9.9E-21 2.1E-25 230.8 33.9 130 695-825 422-557 (655)
112 COG1203 CRISPR-associated heli 99.9 1.9E-21 4.2E-26 242.4 25.3 337 489-832 195-561 (733)
113 PRK12900 secA preprotein trans 99.9 4.8E-21 1E-25 231.9 23.8 127 696-824 579-714 (1025)
114 COG0556 UvrB Helicase subunit 99.9 8.3E-20 1.8E-24 203.8 29.1 189 649-845 387-590 (663)
115 COG1110 Reverse gyrase [DNA re 99.9 1.1E-19 2.3E-24 216.3 31.4 280 485-792 79-416 (1187)
116 TIGR01407 dinG_rel DnaQ family 99.9 2.8E-19 6E-24 227.8 35.6 345 475-834 232-829 (850)
117 KOG0384 Chromodomain-helicase 99.9 6.4E-21 1.4E-25 229.6 17.6 328 467-821 354-811 (1373)
118 PRK05298 excinuclease ABC subu 99.9 3.1E-19 6.8E-24 219.6 32.7 147 697-844 428-589 (652)
119 KOG2340 Uncharacterized conser 99.8 1.5E-20 3.4E-25 208.5 16.9 345 486-831 213-678 (698)
120 KOG0387 Transcription-coupled 99.8 9.3E-20 2E-24 211.4 24.0 314 489-820 205-657 (923)
121 COG1198 PriA Primosomal protei 99.8 3.3E-19 7.1E-24 215.0 28.6 309 488-819 197-601 (730)
122 PRK12326 preprotein translocas 99.8 6.9E-19 1.5E-23 208.1 30.2 321 485-823 75-549 (764)
123 PF06862 DUF1253: Protein of u 99.8 3.1E-18 6.7E-23 195.6 26.6 292 540-832 37-426 (442)
124 TIGR00348 hsdR type I site-spe 99.8 4.2E-18 9.2E-23 210.5 29.7 322 490-834 239-659 (667)
125 PRK13103 secA preprotein trans 99.8 7.6E-18 1.6E-22 204.1 29.9 322 485-824 79-594 (913)
126 COG4096 HsdR Type I site-speci 99.8 1.5E-18 3.3E-23 204.3 22.4 298 488-808 164-525 (875)
127 smart00487 DEXDc DEAD-like hel 99.8 4.8E-18 1E-22 179.0 21.5 188 484-680 3-192 (201)
128 PRK12903 secA preprotein trans 99.8 5.3E-17 1.2E-21 194.5 31.2 322 485-824 75-542 (925)
129 KOG0390 DNA repair protein, SN 99.8 2.8E-17 6.1E-22 196.8 27.8 319 489-817 238-701 (776)
130 PRK07246 bifunctional ATP-depe 99.8 1.2E-16 2.6E-21 200.8 34.2 328 485-834 242-798 (820)
131 KOG0392 SNF2 family DNA-depend 99.8 2.1E-17 4.7E-22 198.5 24.7 322 489-821 975-1454(1549)
132 KOG0389 SNF2 family DNA-depend 99.8 4.3E-17 9.3E-22 189.2 21.2 318 490-821 400-888 (941)
133 KOG1000 Chromatin remodeling p 99.7 2.1E-16 4.5E-21 174.6 25.2 326 488-833 197-617 (689)
134 KOG1123 RNA polymerase II tran 99.7 3E-17 6.4E-22 181.0 15.0 308 488-822 301-654 (776)
135 KOG1002 Nucleotide excision re 99.7 2.4E-16 5.3E-21 173.4 21.8 121 700-820 621-748 (791)
136 CHL00122 secA preprotein trans 99.7 7.7E-16 1.7E-20 186.1 26.2 280 485-781 73-491 (870)
137 KOG4150 Predicted ATP-dependen 99.7 1E-16 2.2E-21 178.6 15.6 350 480-839 277-660 (1034)
138 KOG0949 Predicted helicase, DE 99.7 1.2E-15 2.7E-20 179.9 23.5 162 489-660 511-673 (1330)
139 cd00079 HELICc Helicase superf 99.7 2.9E-16 6.4E-21 154.3 14.4 120 698-817 11-131 (131)
140 PRK08074 bifunctional ATP-depe 99.7 7.8E-15 1.7E-19 187.9 31.1 133 702-834 738-908 (928)
141 PRK12902 secA preprotein trans 99.7 2.1E-14 4.5E-19 173.2 31.6 279 485-781 82-506 (939)
142 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.3E-14 7.1E-19 171.0 33.1 107 713-821 469-616 (636)
143 KOG0953 Mitochondrial RNA heli 99.7 1.2E-15 2.5E-20 171.4 16.8 265 505-819 192-475 (700)
144 COG4889 Predicted helicase [Ge 99.6 4.8E-16 1E-20 180.6 11.3 335 468-818 141-585 (1518)
145 PF00271 Helicase_C: Helicase 99.6 1.3E-15 2.9E-20 135.4 9.1 78 732-809 1-78 (78)
146 KOG0386 Chromatin remodeling c 99.6 5E-15 1.1E-19 176.2 14.8 315 489-825 394-840 (1157)
147 cd00046 DEXDc DEAD-like helica 99.6 3.2E-14 6.8E-19 140.9 16.8 144 505-658 1-144 (144)
148 KOG0388 SNF2 family DNA-depend 99.6 2.3E-13 4.9E-18 155.7 21.3 122 699-820 1028-1153(1185)
149 KOG0391 SNF2 family DNA-depend 99.5 6.8E-13 1.5E-17 158.4 25.0 108 714-821 1276-1387(1958)
150 PRK11747 dinG ATP-dependent DN 99.5 3.5E-12 7.5E-17 158.8 30.6 127 703-833 522-688 (697)
151 TIGR00604 rad3 DNA repair heli 99.5 3E-12 6.5E-17 160.7 30.2 74 485-563 6-83 (705)
152 PF04851 ResIII: Type III rest 99.5 6.7E-14 1.4E-18 146.1 12.8 156 489-660 3-184 (184)
153 KOG4439 RNA polymerase II tran 99.5 4.5E-13 9.7E-18 154.2 19.7 119 698-816 728-851 (901)
154 PRK14873 primosome assembly pr 99.5 1.5E-12 3.3E-17 158.9 25.5 270 512-818 168-536 (665)
155 TIGR02562 cas3_yersinia CRISPR 99.5 1.1E-12 2.4E-17 160.7 23.0 313 488-810 407-881 (1110)
156 COG1199 DinG Rad3-related DNA 99.5 1E-11 2.3E-16 155.7 31.3 104 714-820 479-616 (654)
157 PRK12901 secA preprotein trans 99.5 1.6E-12 3.5E-17 158.4 22.6 126 695-823 608-743 (1112)
158 KOG0951 RNA helicase BRR2, DEA 99.5 3.3E-13 7.3E-18 163.2 15.5 312 491-827 1145-1500(1674)
159 smart00490 HELICc helicase sup 99.4 3.7E-13 8.1E-18 120.3 9.1 81 729-809 2-82 (82)
160 KOG1015 Transcription regulato 99.4 1.2E-11 2.7E-16 145.5 19.6 119 700-818 1127-1272(1567)
161 COG0553 HepA Superfamily II DN 99.4 5E-11 1.1E-15 155.4 25.9 121 699-819 692-818 (866)
162 PF02399 Herpes_ori_bp: Origin 99.3 2.1E-10 4.6E-15 137.8 23.0 287 507-820 52-387 (824)
163 KOG0921 Dosage compensation co 99.3 2.8E-11 6.2E-16 142.4 12.4 311 495-819 384-772 (1282)
164 COG0610 Type I site-specific r 99.2 6.4E-09 1.4E-13 133.0 28.9 309 505-835 274-662 (962)
165 PF00176 SNF2_N: SNF2 family N 99.2 1.9E-10 4.2E-15 130.1 13.4 160 493-659 1-173 (299)
166 KOG1960 Predicted RNA-binding 99.1 8.7E-12 1.9E-16 134.1 0.2 84 1011-1094 91-175 (531)
167 COG0653 SecA Preprotein transl 99.0 8.1E-09 1.8E-13 125.3 20.0 317 492-822 81-546 (822)
168 PF07652 Flavi_DEAD: Flaviviru 99.0 6.3E-10 1.4E-14 107.4 8.1 135 504-662 4-140 (148)
169 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.4E-13 114.3 14.6 76 485-563 5-84 (289)
170 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.4E-13 114.3 14.6 76 485-563 5-84 (289)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 9E-08 1.9E-12 104.2 17.0 133 485-630 74-210 (266)
172 KOG1016 Predicted DNA helicase 98.7 7.6E-07 1.6E-11 104.0 20.5 108 715-822 720-848 (1387)
173 PRK15483 type III restriction- 98.5 8.8E-07 1.9E-11 110.3 14.5 73 764-836 501-583 (986)
174 TIGR00596 rad1 DNA repair prot 98.3 9.1E-06 2E-10 101.6 16.2 66 590-658 7-72 (814)
175 KOG0952 DNA/RNA helicase MER3/ 98.2 4.5E-07 9.8E-12 110.2 1.8 255 491-766 929-1207(1230)
176 KOG1001 Helicase-like transcri 98.2 7.8E-06 1.7E-10 100.0 11.8 102 715-816 540-643 (674)
177 COG3587 Restriction endonuclea 98.2 0.0001 2.2E-09 88.7 20.5 74 763-836 482-568 (985)
178 PF13086 AAA_11: AAA domain; P 98.1 2.8E-05 6.1E-10 84.2 12.3 72 490-562 2-75 (236)
179 PF02562 PhoH: PhoH-like prote 98.0 8.9E-06 1.9E-10 85.2 7.2 146 488-657 3-155 (205)
180 KOG1131 RNA polymerase II tran 98.0 0.0015 3.3E-08 74.5 24.1 146 714-861 530-728 (755)
181 PF13872 AAA_34: P-loop contai 98.0 4.1E-05 8.9E-10 83.7 11.2 175 470-663 24-225 (303)
182 PF13604 AAA_30: AAA domain; P 97.9 4E-05 8.7E-10 80.9 8.9 124 489-658 1-131 (196)
183 TIGR00376 DNA helicase, putati 97.9 0.0006 1.3E-08 84.5 20.5 67 488-562 156-223 (637)
184 PF12340 DUF3638: Protein of u 97.8 0.00019 4.1E-09 75.9 13.0 154 468-631 4-186 (229)
185 PRK10536 hypothetical protein; 97.8 0.00024 5.2E-09 76.6 14.0 144 485-656 55-211 (262)
186 PF13307 Helicase_C_2: Helicas 97.8 5.4E-05 1.2E-09 77.8 8.3 105 714-820 9-149 (167)
187 KOG1802 RNA helicase nonsense 97.7 0.00053 1.2E-08 80.3 15.6 83 481-574 402-484 (935)
188 TIGR01447 recD exodeoxyribonuc 97.6 0.00039 8.4E-09 85.1 12.8 146 491-657 147-295 (586)
189 PF09848 DUF2075: Uncharacteri 97.5 0.00026 5.6E-09 82.0 9.3 107 507-644 4-117 (352)
190 PRK10875 recD exonuclease V su 97.5 0.00052 1.1E-08 84.1 12.1 146 490-657 153-301 (615)
191 KOG1803 DNA helicase [Replicat 97.4 0.00026 5.7E-09 82.7 7.5 63 489-559 185-248 (649)
192 PRK12723 flagellar biosynthesi 97.4 0.003 6.5E-08 73.2 16.2 171 504-724 174-349 (388)
193 TIGR01448 recD_rel helicase, p 97.4 0.0011 2.4E-08 83.5 13.3 129 488-657 322-452 (720)
194 COG3421 Uncharacterized protei 97.4 0.0011 2.4E-08 77.0 11.6 146 509-661 2-168 (812)
195 KOG1132 Helicase of the DEAD s 97.4 0.00081 1.8E-08 81.7 10.6 41 489-529 21-65 (945)
196 PF00448 SRP54: SRP54-type pro 97.2 0.0033 7.2E-08 66.2 12.4 170 507-725 4-178 (196)
197 COG1419 FlhF Flagellar GTP-bin 97.2 0.0078 1.7E-07 68.7 15.0 173 503-725 202-376 (407)
198 PRK11889 flhF flagellar biosyn 97.1 0.012 2.5E-07 67.4 16.2 169 505-724 242-414 (436)
199 PRK05703 flhF flagellar biosyn 97.1 0.014 3E-07 69.0 17.4 130 503-670 220-355 (424)
200 PRK14722 flhF flagellar biosyn 97.1 0.0023 5E-08 73.5 10.6 177 503-724 136-318 (374)
201 KOG1805 DNA replication helica 97.1 0.0025 5.5E-08 78.2 11.3 145 463-630 647-809 (1100)
202 PRK13889 conjugal transfer rel 97.0 0.0035 7.7E-08 80.4 12.3 124 488-657 345-470 (988)
203 PRK14974 cell division protein 97.0 0.006 1.3E-07 69.4 12.8 132 505-670 141-276 (336)
204 PF13245 AAA_19: Part of AAA d 97.0 0.0024 5.2E-08 56.1 7.4 55 502-560 7-62 (76)
205 PF13401 AAA_22: AAA domain; P 97.0 0.0033 7.1E-08 61.5 9.3 22 504-525 4-25 (131)
206 PRK08181 transposase; Validate 97.0 0.0091 2E-07 65.9 13.7 110 500-661 102-212 (269)
207 PRK06526 transposase; Provisio 97.0 0.0043 9.2E-08 68.1 10.9 30 498-527 92-121 (254)
208 KOG0383 Predicted helicase [Ge 97.0 5.3E-05 1.2E-09 91.7 -4.5 77 700-777 616-696 (696)
209 PRK04296 thymidine kinase; Pro 96.9 0.0017 3.8E-08 68.1 7.1 110 504-657 2-114 (190)
210 PRK13826 Dtr system oriT relax 96.9 0.085 1.9E-06 68.5 23.4 124 488-657 380-505 (1102)
211 TIGR02768 TraA_Ti Ti-type conj 96.9 0.01 2.3E-07 75.1 14.3 124 488-657 351-476 (744)
212 COG1875 NYN ribonuclease and A 96.8 0.015 3.4E-07 64.6 13.0 162 485-675 224-415 (436)
213 PRK12727 flagellar biosynthesi 96.7 0.1 2.2E-06 62.1 19.7 169 503-724 349-521 (559)
214 cd02395 SF1_like-KH Splicing f 96.6 0.0049 1.1E-07 59.0 6.6 69 1025-1093 17-96 (120)
215 PF00580 UvrD-helicase: UvrD/R 96.5 0.0064 1.4E-07 69.1 8.2 125 490-627 1-125 (315)
216 TIGR02760 TraI_TIGR conjugativ 96.5 0.11 2.3E-06 72.5 21.1 210 489-736 429-648 (1960)
217 PRK12726 flagellar biosynthesi 96.5 0.051 1.1E-06 62.1 14.9 25 503-527 205-229 (407)
218 PF13871 Helicase_C_4: Helicas 96.5 0.0071 1.5E-07 66.2 7.6 79 755-833 52-142 (278)
219 smart00492 HELICc3 helicase su 96.4 0.021 4.6E-07 56.7 10.3 77 743-819 26-136 (141)
220 PF05970 PIF1: PIF1-like helic 96.4 0.0086 1.9E-07 69.7 8.7 59 490-556 2-66 (364)
221 cd00009 AAA The AAA+ (ATPases 96.4 0.022 4.7E-07 56.2 10.5 25 504-529 19-43 (151)
222 PRK14721 flhF flagellar biosyn 96.4 0.054 1.2E-06 63.4 15.0 173 503-725 190-364 (420)
223 PRK06835 DNA replication prote 96.3 0.058 1.3E-06 61.4 14.2 48 615-662 244-293 (329)
224 PF14617 CMS1: U3-containing 9 96.3 0.0076 1.6E-07 65.2 6.6 86 539-628 125-212 (252)
225 KOG0298 DEAD box-containing he 96.2 0.012 2.7E-07 74.3 8.7 155 503-663 373-555 (1394)
226 KOG1133 Helicase of the DEAD s 96.2 0.27 5.9E-06 59.0 19.2 187 618-820 527-779 (821)
227 KOG0119 Splicing factor 1/bran 96.2 0.008 1.7E-07 68.4 6.3 64 1031-1094 161-232 (554)
228 PRK08116 hypothetical protein; 96.2 0.085 1.8E-06 58.5 14.5 48 615-663 176-226 (268)
229 PRK06921 hypothetical protein; 96.1 0.072 1.6E-06 59.0 13.4 45 503-555 116-160 (266)
230 PRK06731 flhF flagellar biosyn 96.1 0.13 2.8E-06 56.9 15.0 170 503-724 74-248 (270)
231 TIGR01073 pcrA ATP-dependent D 96.1 0.25 5.5E-06 63.1 20.0 72 488-565 3-74 (726)
232 PRK14723 flhF flagellar biosyn 96.1 0.046 9.9E-07 68.1 12.5 129 504-669 185-317 (767)
233 PRK06995 flhF flagellar biosyn 96.0 0.12 2.6E-06 61.5 15.6 64 503-573 255-318 (484)
234 PRK07952 DNA replication prote 96.0 0.063 1.4E-06 58.5 12.1 48 615-662 160-209 (244)
235 PRK00771 signal recognition pa 96.0 0.067 1.5E-06 63.2 13.2 130 505-669 96-228 (437)
236 TIGR01547 phage_term_2 phage t 96.0 0.024 5.2E-07 67.0 9.5 145 506-670 3-152 (396)
237 smart00491 HELICc2 helicase su 96.0 0.035 7.6E-07 55.2 9.1 93 727-819 4-137 (142)
238 PRK12724 flagellar biosynthesi 95.9 0.17 3.7E-06 58.8 15.7 166 504-724 223-396 (432)
239 cd01120 RecA-like_NTPases RecA 95.9 0.081 1.8E-06 53.3 11.9 20 507-526 2-21 (165)
240 smart00382 AAA ATPases associa 95.9 0.016 3.4E-07 56.6 6.3 19 504-522 2-20 (148)
241 TIGR00064 ftsY signal recognit 95.8 0.11 2.4E-06 57.7 13.2 133 505-670 73-214 (272)
242 PF03354 Terminase_1: Phage Te 95.8 0.019 4.2E-07 69.3 7.6 150 492-654 1-159 (477)
243 PRK09183 transposase/IS protei 95.8 0.087 1.9E-06 58.2 12.1 26 500-525 98-123 (259)
244 PHA02533 17 large terminase pr 95.6 0.071 1.5E-06 64.7 11.4 72 489-566 59-130 (534)
245 cd01124 KaiC KaiC is a circadi 95.6 0.095 2.1E-06 54.6 11.1 48 507-563 2-49 (187)
246 COG2805 PilT Tfp pilus assembl 95.5 0.021 4.5E-07 62.1 5.7 53 460-532 99-152 (353)
247 PRK08727 hypothetical protein; 95.4 0.065 1.4E-06 58.3 9.4 47 616-662 92-140 (233)
248 PRK14712 conjugal transfer nic 95.4 0.074 1.6E-06 71.2 11.4 62 489-556 835-900 (1623)
249 PRK12377 putative replication 95.4 0.14 3E-06 56.0 11.7 47 615-661 161-209 (248)
250 TIGR01425 SRP54_euk signal rec 95.3 0.2 4.3E-06 58.8 13.4 127 506-669 102-235 (429)
251 PRK06893 DNA replication initi 95.3 0.049 1.1E-06 59.0 7.9 47 615-661 89-137 (229)
252 PRK10867 signal recognition pa 95.3 0.18 3.8E-06 59.6 12.9 59 506-574 102-162 (433)
253 PRK13709 conjugal transfer nic 95.2 0.095 2.1E-06 71.1 11.5 129 488-657 966-1099(1747)
254 TIGR01075 uvrD DNA helicase II 95.1 0.064 1.4E-06 68.3 9.4 71 488-564 3-73 (715)
255 PRK10919 ATP-dependent DNA hel 95.1 0.066 1.4E-06 67.4 9.4 70 489-564 2-71 (672)
256 PF05127 Helicase_RecD: Helica 95.1 0.013 2.9E-07 60.0 2.5 124 508-659 1-124 (177)
257 TIGR03499 FlhF flagellar biosy 95.0 0.15 3.2E-06 57.1 11.0 25 503-527 193-217 (282)
258 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.13 2.7E-06 55.6 10.2 21 503-523 37-57 (226)
259 PRK10917 ATP-dependent DNA hel 94.8 0.12 2.5E-06 65.4 10.4 94 697-790 292-391 (681)
260 COG1484 DnaC DNA replication p 94.7 0.18 4E-06 55.4 10.4 49 503-560 104-152 (254)
261 TIGR00959 ffh signal recogniti 94.7 0.31 6.6E-06 57.6 12.7 133 506-670 101-236 (428)
262 PRK07764 DNA polymerase III su 94.6 0.2 4.4E-06 63.8 12.0 42 616-659 119-160 (824)
263 PRK05642 DNA replication initi 94.6 0.13 2.9E-06 55.8 9.1 45 616-660 96-141 (234)
264 PRK08084 DNA replication initi 94.6 0.12 2.7E-06 56.2 8.8 43 618-660 98-142 (235)
265 COG1444 Predicted P-loop ATPas 94.6 0.31 6.8E-06 60.3 12.9 149 482-659 207-357 (758)
266 cd00561 CobA_CobO_BtuR ATP:cor 94.6 0.63 1.4E-05 47.0 12.9 52 615-666 93-146 (159)
267 PTZ00293 thymidine kinase; Pro 94.6 0.19 4.1E-06 53.1 9.6 39 503-549 3-41 (211)
268 PRK12422 chromosomal replicati 94.5 0.24 5.2E-06 59.0 11.6 50 616-665 201-252 (445)
269 PRK07003 DNA polymerase III su 94.5 0.34 7.4E-06 60.0 12.8 41 616-658 118-158 (830)
270 PRK12323 DNA polymerase III su 94.5 0.28 6.1E-06 59.9 11.9 40 615-655 122-161 (700)
271 TIGR01074 rep ATP-dependent DN 94.5 0.13 2.9E-06 65.1 9.9 90 490-606 2-91 (664)
272 PRK14087 dnaA chromosomal repl 94.5 0.21 4.5E-06 59.7 10.9 110 505-662 142-253 (450)
273 PRK05580 primosome assembly pr 94.5 0.26 5.6E-06 62.1 12.2 92 698-790 173-266 (679)
274 PRK11054 helD DNA helicase IV; 94.4 0.14 3.1E-06 64.1 9.8 72 486-563 193-264 (684)
275 PRK05707 DNA polymerase III su 94.4 0.22 4.7E-06 56.9 10.5 35 490-524 4-42 (328)
276 PHA02544 44 clamp loader, smal 94.4 0.28 6.1E-06 56.0 11.6 39 617-655 100-138 (316)
277 PRK11773 uvrD DNA-dependent he 94.3 0.12 2.7E-06 65.8 9.2 70 489-564 9-78 (721)
278 PRK08903 DnaA regulatory inact 94.3 0.18 4E-06 54.5 9.2 43 617-660 90-133 (227)
279 KOG0989 Replication factor C, 94.2 0.21 4.5E-06 54.8 9.1 44 614-658 126-169 (346)
280 PRK05986 cob(I)alamin adenolsy 94.2 0.2 4.2E-06 52.1 8.5 141 502-667 20-167 (191)
281 PHA03333 putative ATPase subun 94.2 0.71 1.5E-05 56.4 14.3 72 490-568 170-244 (752)
282 cd03115 SRP The signal recogni 94.1 0.66 1.4E-05 47.7 12.6 54 617-670 82-136 (173)
283 COG3973 Superfamily I DNA and 94.1 0.21 4.5E-06 59.2 9.3 66 493-560 213-280 (747)
284 TIGR02760 TraI_TIGR conjugativ 94.1 0.19 4.2E-06 70.0 10.8 62 488-556 1018-1084(1960)
285 PRK08533 flagellar accessory p 94.1 0.46 1E-05 51.5 11.7 52 502-562 22-73 (230)
286 COG0552 FtsY Signal recognitio 94.0 0.74 1.6E-05 51.5 13.1 129 507-669 142-280 (340)
287 PF05621 TniB: Bacterial TniB 94.0 0.29 6.2E-06 54.3 9.8 54 505-562 62-118 (302)
288 TIGR00643 recG ATP-dependent D 93.9 0.19 4.2E-06 62.9 9.6 93 698-790 267-365 (630)
289 PRK00149 dnaA chromosomal repl 93.9 0.27 5.9E-06 59.1 10.5 48 616-663 210-259 (450)
290 TIGR00362 DnaA chromosomal rep 93.9 0.33 7.2E-06 57.5 11.0 37 505-547 137-173 (405)
291 TIGR00708 cobA cob(I)alamin ad 93.9 0.24 5.2E-06 50.7 8.3 52 616-667 96-149 (173)
292 PRK14086 dnaA chromosomal repl 93.9 0.28 6.2E-06 59.8 10.4 49 615-663 375-425 (617)
293 TIGR00595 priA primosomal prot 93.8 0.3 6.5E-06 59.3 10.7 92 698-790 8-101 (505)
294 PRK10416 signal recognition pa 93.8 0.89 1.9E-05 51.7 13.7 134 504-670 114-256 (318)
295 COG2256 MGS1 ATPase related to 93.8 0.3 6.5E-06 55.5 9.6 36 618-658 105-140 (436)
296 PTZ00112 origin recognition co 93.8 0.56 1.2E-05 58.7 12.5 23 507-530 784-806 (1164)
297 PRK08939 primosomal protein Dn 93.7 0.55 1.2E-05 53.1 11.8 49 615-663 215-266 (306)
298 TIGR02640 gas_vesic_GvpN gas v 93.7 0.48 1E-05 52.5 11.3 28 495-522 12-39 (262)
299 PRK12402 replication factor C 93.6 0.31 6.8E-06 56.0 10.1 39 616-655 124-162 (337)
300 PRK07994 DNA polymerase III su 93.6 0.62 1.3E-05 57.7 12.8 19 507-525 41-59 (647)
301 TIGR02785 addA_Gpos recombinat 93.6 0.34 7.4E-06 65.3 11.5 125 490-628 2-126 (1232)
302 PF00308 Bac_DnaA: Bacterial d 93.4 0.22 4.8E-06 53.5 7.8 48 615-662 95-144 (219)
303 TIGR00580 mfd transcription-re 93.4 0.29 6.3E-06 63.3 10.0 95 697-791 482-582 (926)
304 KOG0670 U4/U6-associated splic 93.4 0.11 2.4E-06 60.3 5.4 43 522-574 496-538 (752)
305 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.29 6.3E-06 53.3 8.6 52 503-563 20-71 (237)
306 TIGR02881 spore_V_K stage V sp 93.3 0.62 1.3E-05 51.6 11.2 18 505-522 43-60 (261)
307 PRK08769 DNA polymerase III su 93.2 0.7 1.5E-05 52.5 11.6 42 488-530 3-51 (319)
308 PRK14960 DNA polymerase III su 93.2 0.89 1.9E-05 55.8 13.0 43 616-660 117-159 (702)
309 PRK14873 primosome assembly pr 93.2 0.51 1.1E-05 58.9 11.4 92 697-789 170-264 (665)
310 TIGR03015 pepcterm_ATPase puta 93.2 0.91 2E-05 50.3 12.5 33 490-522 24-61 (269)
311 PRK13833 conjugal transfer pro 93.2 0.29 6.3E-06 55.5 8.4 64 482-553 123-187 (323)
312 COG1435 Tdk Thymidine kinase [ 93.1 0.63 1.4E-05 48.1 9.9 90 505-629 5-94 (201)
313 PRK08691 DNA polymerase III su 93.1 0.7 1.5E-05 57.1 12.1 40 615-655 117-156 (709)
314 PRK14956 DNA polymerase III su 93.0 0.53 1.1E-05 55.9 10.5 19 507-525 43-61 (484)
315 cd01122 GP4d_helicase GP4d_hel 92.9 0.36 7.7E-06 53.8 8.7 39 502-547 28-66 (271)
316 PRK11331 5-methylcytosine-spec 92.8 0.35 7.5E-06 56.8 8.5 33 490-522 180-212 (459)
317 PRK14964 DNA polymerase III su 92.8 0.64 1.4E-05 55.7 11.0 44 615-660 114-157 (491)
318 PRK13342 recombination factor 92.7 0.79 1.7E-05 54.4 11.8 37 617-658 92-128 (413)
319 PF05496 RuvB_N: Holliday junc 92.7 0.42 9E-06 50.8 8.1 17 506-522 52-68 (233)
320 PF00004 AAA: ATPase family as 92.6 0.33 7.2E-06 47.0 7.1 16 618-633 59-74 (132)
321 PRK13894 conjugal transfer ATP 92.6 0.35 7.6E-06 55.0 8.1 65 480-552 125-190 (319)
322 PRK13341 recombination factor 92.6 0.69 1.5E-05 58.4 11.4 40 617-661 109-148 (725)
323 PRK00411 cdc6 cell division co 92.6 0.57 1.2E-05 55.2 10.4 26 505-531 56-81 (394)
324 PRK14949 DNA polymerase III su 92.5 0.87 1.9E-05 57.7 11.9 43 616-660 118-160 (944)
325 TIGR03689 pup_AAA proteasome A 92.5 0.69 1.5E-05 55.7 10.7 59 466-528 178-239 (512)
326 TIGR02928 orc1/cdc6 family rep 92.5 0.6 1.3E-05 54.4 10.2 25 505-530 41-65 (365)
327 PRK04195 replication factor C 92.4 0.63 1.4E-05 56.4 10.5 18 504-521 39-56 (482)
328 PF06745 KaiC: KaiC; InterPro 92.4 0.35 7.6E-06 52.2 7.5 53 503-563 18-70 (226)
329 COG2109 BtuR ATP:corrinoid ade 92.3 0.87 1.9E-05 46.6 9.5 52 617-668 122-175 (198)
330 PF13173 AAA_14: AAA domain 92.3 1 2.2E-05 43.8 10.1 38 617-657 61-98 (128)
331 COG1474 CDC6 Cdc6-related prot 92.3 0.99 2.1E-05 52.4 11.4 25 506-531 44-68 (366)
332 PRK06645 DNA polymerase III su 92.2 0.82 1.8E-05 55.2 11.0 19 506-524 45-63 (507)
333 PRK09111 DNA polymerase III su 92.1 1 2.2E-05 55.6 11.9 41 614-655 129-169 (598)
334 PF03969 AFG1_ATPase: AFG1-lik 92.1 1.3 2.8E-05 51.3 12.0 46 616-662 126-172 (362)
335 TIGR02782 TrbB_P P-type conjug 92.0 0.5 1.1E-05 53.3 8.3 66 480-553 109-175 (299)
336 PRK14957 DNA polymerase III su 91.9 1.3 2.9E-05 53.8 12.4 40 615-655 117-156 (546)
337 PLN03025 replication factor C 91.9 1.2 2.7E-05 50.8 11.7 40 617-658 99-138 (319)
338 PRK09112 DNA polymerase III su 91.9 0.82 1.8E-05 52.8 10.1 40 615-655 139-178 (351)
339 PF05707 Zot: Zonular occluden 91.9 0.52 1.1E-05 49.6 7.9 51 617-668 79-135 (193)
340 PRK14088 dnaA chromosomal repl 91.8 1.5 3.2E-05 52.4 12.5 49 617-665 194-244 (440)
341 PRK07471 DNA polymerase III su 91.8 0.9 1.9E-05 52.8 10.3 43 614-657 138-180 (365)
342 PRK11823 DNA repair protein Ra 91.8 0.82 1.8E-05 54.7 10.3 51 504-563 80-130 (446)
343 PRK14961 DNA polymerase III su 91.7 1 2.2E-05 52.5 10.8 17 507-523 41-57 (363)
344 cd00984 DnaB_C DnaB helicase C 91.7 0.33 7.3E-06 52.9 6.5 47 503-556 12-61 (242)
345 COG4626 Phage terminase-like p 91.7 1.1 2.4E-05 53.4 10.9 148 489-656 61-223 (546)
346 PRK06067 flagellar accessory p 91.7 1.9 4.2E-05 46.8 12.4 51 504-563 25-75 (234)
347 PF01695 IstB_IS21: IstB-like 91.7 0.4 8.6E-06 49.7 6.6 47 501-556 44-90 (178)
348 PRK14951 DNA polymerase III su 91.6 1.3 2.8E-05 54.7 11.9 44 616-661 123-166 (618)
349 PRK14959 DNA polymerase III su 91.5 2 4.4E-05 52.8 13.4 20 506-525 40-59 (624)
350 PRK14969 DNA polymerase III su 91.5 0.92 2E-05 55.4 10.5 40 615-655 117-156 (527)
351 PHA03368 DNA packaging termina 91.5 0.98 2.1E-05 55.0 10.3 136 502-660 252-392 (738)
352 PF05876 Terminase_GpA: Phage 91.4 0.39 8.4E-06 59.0 7.3 70 489-565 16-88 (557)
353 COG1110 Reverse gyrase [DNA re 91.4 0.52 1.1E-05 59.2 8.1 63 713-775 124-192 (1187)
354 PF02572 CobA_CobO_BtuR: ATP:c 91.4 1.6 3.4E-05 44.8 10.4 140 507-666 6-147 (172)
355 TIGR03878 thermo_KaiC_2 KaiC d 91.4 1.3 2.8E-05 49.0 10.7 37 503-547 35-71 (259)
356 PRK14963 DNA polymerase III su 91.3 0.79 1.7E-05 55.5 9.5 22 507-529 39-60 (504)
357 PRK14962 DNA polymerase III su 91.3 1.2 2.5E-05 53.6 10.9 17 507-523 39-55 (472)
358 PRK11034 clpA ATP-dependent Cl 91.2 1.6 3.4E-05 55.5 12.3 44 619-662 280-327 (758)
359 cd03239 ABC_SMC_head The struc 91.2 0.19 4.2E-06 52.1 3.7 42 616-657 115-157 (178)
360 PRK14958 DNA polymerase III su 91.1 0.84 1.8E-05 55.4 9.6 39 616-655 118-156 (509)
361 PF05872 DUF853: Bacterial pro 91.1 0.5 1.1E-05 54.8 7.1 29 494-522 9-37 (502)
362 COG0470 HolB ATPase involved i 91.1 0.61 1.3E-05 53.2 8.1 27 504-531 23-50 (325)
363 PF04665 Pox_A32: Poxvirus A32 91.0 1.2 2.7E-05 48.1 9.6 25 506-531 15-39 (241)
364 PRK07940 DNA polymerase III su 91.0 0.72 1.6E-05 54.0 8.6 45 615-661 115-159 (394)
365 PRK14952 DNA polymerase III su 91.0 1.2 2.6E-05 54.7 10.8 44 615-660 116-159 (584)
366 TIGR02639 ClpA ATP-dependent C 91.0 2.5 5.5E-05 54.0 14.2 21 504-524 203-223 (731)
367 PRK10689 transcription-repair 91.0 0.87 1.9E-05 60.4 10.2 76 713-788 648-728 (1147)
368 KOG0738 AAA+-type ATPase [Post 90.9 0.92 2E-05 51.3 8.7 16 505-520 246-261 (491)
369 CHL00181 cbbX CbbX; Provisiona 90.9 1.1 2.4E-05 50.3 9.6 21 504-524 59-79 (287)
370 PRK05563 DNA polymerase III su 90.8 1.8 3.9E-05 53.4 12.2 21 505-525 39-59 (559)
371 KOG2028 ATPase related to the 90.7 0.89 1.9E-05 50.8 8.3 17 506-522 164-180 (554)
372 PF13177 DNA_pol3_delta2: DNA 90.7 1.3 2.8E-05 45.2 9.2 42 616-658 101-142 (162)
373 PRK14965 DNA polymerase III su 90.7 1.1 2.3E-05 55.6 10.0 44 615-660 117-160 (576)
374 TIGR03346 chaperone_ClpB ATP-d 90.6 2.2 4.7E-05 55.5 13.3 45 618-662 267-314 (852)
375 KOG1513 Nuclear helicase MOP-3 90.5 0.28 6.1E-06 59.3 4.5 81 757-837 850-942 (1300)
376 PRK04328 hypothetical protein; 90.4 1.2 2.7E-05 48.8 9.3 52 503-563 22-73 (249)
377 COG0541 Ffh Signal recognition 90.3 3.3 7.1E-05 48.1 12.6 132 507-671 103-237 (451)
378 PRK06964 DNA polymerase III su 90.2 1.8 3.8E-05 49.7 10.6 35 491-525 3-42 (342)
379 PRK14950 DNA polymerase III su 90.2 3.3 7.2E-05 51.4 13.9 19 506-524 40-58 (585)
380 KOG2036 Predicted P-loop ATPas 90.1 3.9 8.5E-05 49.4 13.3 136 491-659 255-412 (1011)
381 COG1198 PriA Primosomal protei 90.1 1.1 2.4E-05 56.0 9.5 93 695-788 225-319 (730)
382 PF05729 NACHT: NACHT domain 90.1 2.9 6.2E-05 42.1 11.3 25 506-531 2-26 (166)
383 COG0513 SrmB Superfamily II DN 90.0 1.1 2.4E-05 54.7 9.3 68 717-788 102-180 (513)
384 KOG1133 Helicase of the DEAD s 90.0 0.4 8.6E-06 57.7 5.2 42 489-530 15-60 (821)
385 cd01121 Sms Sms (bacterial rad 90.0 1.8 3.9E-05 50.4 10.5 50 504-562 82-131 (372)
386 PTZ00454 26S protease regulato 89.9 1.1 2.4E-05 52.7 8.8 54 465-521 140-196 (398)
387 KOG2543 Origin recognition com 89.9 1.9 4.2E-05 48.8 10.2 46 616-661 114-161 (438)
388 TIGR02525 plasmid_TraJ plasmid 89.8 0.54 1.2E-05 54.5 6.1 48 465-531 128-175 (372)
389 KOG0670 U4/U6-associated splic 89.8 0.21 4.6E-06 58.0 2.7 9 508-516 435-443 (752)
390 PRK08699 DNA polymerase III su 89.8 2.2 4.7E-05 48.8 10.9 36 491-526 3-43 (325)
391 TIGR02880 cbbX_cfxQ probable R 89.7 1 2.2E-05 50.5 8.1 19 504-522 58-76 (284)
392 PRK14955 DNA polymerase III su 89.7 2.1 4.5E-05 50.5 11.1 20 506-525 40-59 (397)
393 PF00265 TK: Thymidine kinase; 89.7 0.62 1.4E-05 48.1 5.8 36 507-550 4-39 (176)
394 PF03237 Terminase_6: Terminas 89.6 2.6 5.7E-05 48.8 12.0 145 508-673 1-154 (384)
395 TIGR02524 dot_icm_DotB Dot/Icm 89.6 0.53 1.2E-05 54.4 5.9 28 503-531 133-160 (358)
396 COG4962 CpaF Flp pilus assembl 89.6 0.51 1.1E-05 52.9 5.4 62 485-555 153-215 (355)
397 TIGR03345 VI_ClpV1 type VI sec 89.5 2.8 6.1E-05 54.2 12.8 18 505-522 209-226 (852)
398 PHA00729 NTP-binding motif con 89.3 2.2 4.7E-05 45.8 9.7 74 592-668 60-138 (226)
399 PRK13851 type IV secretion sys 89.3 0.54 1.2E-05 53.9 5.6 47 498-553 156-202 (344)
400 PHA00350 putative assembly pro 89.3 3.2 7E-05 48.3 11.8 25 507-531 4-29 (399)
401 TIGR03880 KaiC_arch_3 KaiC dom 89.2 1.9 4.2E-05 46.4 9.6 51 504-563 16-66 (224)
402 TIGR00767 rho transcription te 89.2 1.1 2.4E-05 51.8 7.9 27 503-530 167-193 (415)
403 PRK13900 type IV secretion sys 89.2 1 2.2E-05 51.6 7.6 45 500-553 156-200 (332)
404 PF10593 Z1: Z1 domain; Inter 89.2 0.86 1.9E-05 49.5 6.7 88 738-830 110-202 (239)
405 KOG0344 ATP-dependent RNA heli 89.1 5.7 0.00012 47.4 13.6 98 512-627 365-466 (593)
406 COG2804 PulE Type II secretory 89.1 0.69 1.5E-05 54.5 6.2 40 491-531 243-284 (500)
407 PRK06871 DNA polymerase III su 89.0 1.6 3.5E-05 49.6 9.1 35 491-525 4-45 (325)
408 PRK07414 cob(I)yrinic acid a,c 88.9 5.9 0.00013 40.7 12.1 51 616-666 114-166 (178)
409 KOG0339 ATP-dependent RNA heli 88.7 2.1 4.5E-05 49.9 9.4 71 714-788 295-376 (731)
410 TIGR00635 ruvB Holliday juncti 88.7 1.1 2.5E-05 50.6 7.7 17 505-521 31-47 (305)
411 PF01637 Arch_ATPase: Archaeal 88.5 0.51 1.1E-05 50.7 4.5 40 619-658 120-165 (234)
412 KOG0744 AAA+-type ATPase [Post 88.4 1.6 3.4E-05 48.4 7.8 114 503-633 176-325 (423)
413 COG3972 Superfamily I DNA and 88.4 1.2 2.5E-05 51.9 7.2 70 489-565 162-231 (660)
414 PRK04841 transcriptional regul 88.3 2.1 4.5E-05 56.5 10.9 44 617-660 121-164 (903)
415 TIGR02237 recomb_radB DNA repa 88.1 5.2 0.00011 42.4 11.9 38 503-548 11-48 (209)
416 PRK13764 ATPase; Provisional 88.0 0.95 2E-05 55.5 6.7 27 503-530 256-282 (602)
417 PRK14948 DNA polymerase III su 88.0 2.7 5.8E-05 52.3 10.8 21 505-525 39-59 (620)
418 KOG0733 Nuclear AAA ATPase (VC 87.9 2.7 5.8E-05 50.4 9.8 54 465-521 506-562 (802)
419 PRK14954 DNA polymerase III su 87.9 1.2 2.6E-05 55.2 7.5 20 506-525 40-59 (620)
420 PRK05896 DNA polymerase III su 87.8 1.3 2.8E-05 54.2 7.7 21 505-525 39-59 (605)
421 TIGR01243 CDC48 AAA family ATP 87.8 1.5 3.3E-05 56.2 8.7 55 464-521 447-504 (733)
422 cd01128 rho_factor Transcripti 87.7 1.3 2.9E-05 48.4 7.1 19 501-519 13-31 (249)
423 KOG2227 Pre-initiation complex 87.7 3.3 7.2E-05 48.2 10.3 49 504-558 175-224 (529)
424 PRK03992 proteasome-activating 87.7 1.5 3.3E-05 51.5 8.1 16 505-520 166-181 (389)
425 COG2909 MalT ATP-dependent tra 87.7 0.92 2E-05 56.4 6.2 44 616-659 128-171 (894)
426 PF12846 AAA_10: AAA-like doma 87.5 1.5 3.2E-05 49.3 7.7 43 504-554 1-43 (304)
427 KOG0331 ATP-dependent RNA heli 87.5 4.4 9.6E-05 48.4 11.6 88 716-807 167-272 (519)
428 TIGR00678 holB DNA polymerase 87.4 4.5 9.7E-05 42.2 10.7 41 615-657 94-134 (188)
429 COG1200 RecG RecG-like helicas 87.4 2.7 5.8E-05 51.4 9.8 89 700-788 297-390 (677)
430 TIGR03881 KaiC_arch_4 KaiC dom 87.4 3.6 7.8E-05 44.4 10.3 51 503-562 19-69 (229)
431 PRK07993 DNA polymerase III su 87.4 4.7 0.0001 46.3 11.6 36 490-525 3-45 (334)
432 KOG0739 AAA+-type ATPase [Post 87.3 7.3 0.00016 42.8 11.9 54 499-564 156-214 (439)
433 PRK10865 protein disaggregatio 87.1 3.4 7.3E-05 53.7 11.3 19 505-523 200-218 (857)
434 CHL00095 clpC Clp protease ATP 86.9 2.8 6.2E-05 54.3 10.6 23 504-526 200-222 (821)
435 KOG0701 dsRNA-specific nucleas 86.8 0.47 1E-05 63.2 3.4 94 716-809 294-399 (1606)
436 KOG0740 AAA+-type ATPase [Post 86.8 2.2 4.7E-05 49.8 8.4 98 614-734 242-352 (428)
437 PRK11634 ATP-dependent RNA hel 86.8 2.3 4.9E-05 53.2 9.3 71 714-788 74-155 (629)
438 KOG0741 AAA+-type ATPase [Post 86.7 5.8 0.00013 46.8 11.5 69 471-549 493-573 (744)
439 TIGR02012 tigrfam_recA protein 86.6 2.2 4.7E-05 48.4 8.1 42 503-552 54-95 (321)
440 PRK06090 DNA polymerase III su 86.6 2.5 5.4E-05 48.0 8.6 36 490-525 4-46 (319)
441 COG2255 RuvB Holliday junction 86.6 1.3 2.9E-05 48.2 6.0 27 597-630 90-116 (332)
442 PRK07133 DNA polymerase III su 86.5 3.8 8.3E-05 51.3 10.8 27 1068-1094 663-689 (725)
443 PRK08451 DNA polymerase III su 86.4 2.9 6.3E-05 50.8 9.6 40 615-655 115-154 (535)
444 COG5008 PilU Tfp pilus assembl 86.3 0.59 1.3E-05 50.1 3.2 44 465-528 106-150 (375)
445 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.3 3.6 7.8E-05 40.9 8.8 41 615-658 86-126 (144)
446 PF00013 KH_1: KH domain syndr 86.1 1.3 2.9E-05 36.6 4.7 44 1031-1086 17-60 (60)
447 PF01443 Viral_helicase1: Vira 86.1 0.94 2E-05 49.0 4.9 19 507-526 1-19 (234)
448 TIGR02655 circ_KaiC circadian 86.1 3.9 8.4E-05 49.6 10.6 59 496-563 250-313 (484)
449 TIGR02868 CydC thiol reductant 85.9 2.1 4.5E-05 52.7 8.3 41 615-655 486-526 (529)
450 TIGR02858 spore_III_AA stage I 85.9 3.5 7.5E-05 45.8 9.1 24 497-520 101-127 (270)
451 KOG0742 AAA+-type ATPase [Post 85.8 4.2 9.2E-05 46.3 9.6 16 505-520 385-400 (630)
452 PF06733 DEAD_2: DEAD_2; Inte 85.7 0.65 1.4E-05 47.9 3.2 47 584-631 113-159 (174)
453 TIGR01243 CDC48 AAA family ATP 85.7 3.7 8.1E-05 52.6 10.7 18 503-520 211-228 (733)
454 KOG0780 Signal recognition par 85.7 7.2 0.00016 44.4 11.2 131 507-670 104-237 (483)
455 PF02606 LpxK: Tetraacyldisacc 85.6 16 0.00035 41.7 14.6 232 506-772 36-287 (326)
456 TIGR01420 pilT_fam pilus retra 85.6 1.9 4.1E-05 49.8 7.2 27 503-530 121-147 (343)
457 PRK14953 DNA polymerase III su 85.6 3.1 6.7E-05 50.3 9.3 19 507-525 41-59 (486)
458 PRK00440 rfc replication facto 85.5 7.6 0.00016 44.1 12.2 38 617-655 102-139 (319)
459 PRK05973 replicative DNA helic 85.4 1.3 2.9E-05 47.9 5.4 65 489-563 50-114 (237)
460 PRK14971 DNA polymerase III su 85.3 4.9 0.00011 50.1 11.1 43 614-658 118-160 (614)
461 cd00268 DEADc DEAD-box helicas 85.3 4.8 0.0001 42.4 9.7 71 714-788 69-149 (203)
462 COG1197 Mfd Transcription-repa 85.3 3.5 7.6E-05 53.4 9.8 90 699-788 627-722 (1139)
463 PF02534 T4SS-DNA_transf: Type 85.2 0.97 2.1E-05 54.7 4.9 47 505-561 45-91 (469)
464 COG2874 FlaH Predicted ATPases 85.2 11 0.00024 39.8 11.6 144 506-674 30-186 (235)
465 PF03266 NTPase_1: NTPase; In 85.2 0.33 7.1E-06 49.8 0.7 118 506-643 1-123 (168)
466 PHA00012 I assembly protein 85.2 7.8 0.00017 43.6 11.2 25 507-531 4-28 (361)
467 PRK07413 hypothetical protein; 85.0 6.5 0.00014 45.4 10.9 52 616-667 124-177 (382)
468 KOG0298 DEAD box-containing he 84.9 1.3 2.9E-05 56.9 5.8 95 714-812 1221-1315(1394)
469 PRK14701 reverse gyrase; Provi 84.9 4 8.6E-05 56.2 10.7 61 713-773 121-187 (1638)
470 KOG1132 Helicase of the DEAD s 84.9 14 0.00031 46.4 14.2 104 716-820 563-721 (945)
471 PRK00080 ruvB Holliday junctio 84.6 1.8 4E-05 49.6 6.5 18 505-522 52-69 (328)
472 cd00983 recA RecA is a bacter 84.4 1.7 3.6E-05 49.4 5.9 42 504-553 55-96 (325)
473 PF02456 Adeno_IVa2: Adenoviru 84.2 2.8 6.1E-05 46.2 7.2 41 507-553 90-130 (369)
474 COG0630 VirB11 Type IV secreto 84.1 1.4 3.1E-05 49.9 5.3 40 488-528 126-166 (312)
475 COG1618 Predicted nucleotide k 84.0 0.4 8.7E-06 47.8 0.7 120 505-644 6-129 (179)
476 COG1660 Predicted P-loop-conta 83.9 7.6 0.00016 42.0 10.0 26 723-748 257-283 (286)
477 TIGR01389 recQ ATP-dependent D 83.9 8.9 0.00019 47.9 12.7 76 713-788 52-133 (591)
478 cd01126 TraG_VirD4 The TraG/Tr 83.8 0.84 1.8E-05 53.7 3.4 42 506-557 1-42 (384)
479 KOG0347 RNA helicase [RNA proc 83.8 1.9 4E-05 50.8 5.9 69 716-788 265-346 (731)
480 KOG1513 Nuclear helicase MOP-3 83.8 2.9 6.2E-05 51.2 7.5 229 488-751 263-529 (1300)
481 COG3598 RepA RecA-family ATPas 83.8 9 0.00019 42.7 10.7 77 493-570 77-156 (402)
482 cd03247 ABCC_cytochrome_bd The 83.6 4.8 0.0001 41.5 8.6 42 615-657 114-155 (178)
483 PRK05342 clpX ATP-dependent pr 83.6 2.2 4.9E-05 50.2 6.7 20 503-522 107-126 (412)
484 PRK09354 recA recombinase A; P 83.5 3.1 6.7E-05 47.7 7.6 42 504-553 60-101 (349)
485 PRK09435 membrane ATPase/prote 83.5 18 0.00039 41.4 13.7 23 507-530 59-81 (332)
486 PRK06647 DNA polymerase III su 83.5 4 8.7E-05 50.2 9.1 19 506-524 40-58 (563)
487 cd02393 PNPase_KH Polynucleoti 83.5 2.3 5E-05 35.5 4.9 43 1031-1087 19-61 (61)
488 COG1219 ClpX ATP-dependent pro 83.4 0.83 1.8E-05 50.4 2.8 20 502-521 95-114 (408)
489 COG0378 HypB Ni2+-binding GTPa 83.3 16 0.00035 37.9 11.8 52 619-670 145-197 (202)
490 KOG0991 Replication factor C, 83.3 2.7 5.8E-05 44.4 6.2 19 505-523 49-67 (333)
491 cd01130 VirB11-like_ATPase Typ 83.2 1.9 4.1E-05 45.0 5.4 31 490-520 10-41 (186)
492 PF03668 ATP_bind_2: P-loop AT 83.1 3.7 7.9E-05 45.4 7.6 27 723-749 256-282 (284)
493 TIGR03600 phage_DnaB phage rep 83.1 5.2 0.00011 47.7 9.7 38 503-547 193-230 (421)
494 COG1485 Predicted ATPase [Gene 83.1 5.5 0.00012 45.1 9.0 109 505-662 66-175 (367)
495 TIGR00665 DnaB replicative DNA 83.0 5.7 0.00012 47.5 10.1 161 486-655 177-352 (434)
496 PRK06305 DNA polymerase III su 83.0 7.6 0.00017 46.6 11.0 116 507-655 42-158 (451)
497 TIGR00416 sms DNA repair prote 82.9 4.7 0.0001 48.3 9.2 119 501-656 91-219 (454)
498 KOG0745 Putative ATP-dependent 82.8 3.5 7.6E-05 47.5 7.4 132 502-656 224-385 (564)
499 KOG0060 Long-chain acyl-CoA tr 82.6 1.9 4.2E-05 51.4 5.5 132 501-646 458-617 (659)
500 PF14516 AAA_35: AAA-like doma 82.6 10 0.00022 43.6 11.4 147 487-657 13-177 (331)
No 1
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-122 Score=1089.58 Aligned_cols=845 Identities=54% Similarity=0.821 Sum_probs=689.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCcCCCCcccCcCCCCCccCCcCC-CCCCCCCCCCCCCC
Q 001261 203 DEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTG-KSETDMDADEEPKP 281 (1112)
Q Consensus 203 ~~~r~~~ee~~~r~~~~~e~~~~~~~~ee~~~~~~~~~~~~~~~~~r~~~~~~e~~ed~~~~~~~-~~e~~~~~~~~~~~ 281 (1112)
..+..+.++.++++++.+.|.+..++++.......-............|++.+++++++.+|... .++.+. ..
T Consensus 141 ~~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~t~~~~~~~~~~s~k~~~l~~~~d~~~~~~~~~~~s~q~~------~~ 214 (997)
T KOG0334|consen 141 SIQARLAEELRKRRERVEKWKELKRKEEKEKVVTLMLNVSDEKNSKKLWELEDEDDDDSANPAELGWSEQDV------PE 214 (997)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcchHHhhhhhhcccccccccccceEecCCCCccccCccccchhhccc------hh
Confidence 45677889999999999999998887776666554444555667788899999988777664321 111100 00
Q ss_pred CCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChhhHHhhhccCCCCCCC-CCccccccccccCCCCCCC
Q 001261 282 SENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTD-GNNVESKKMDRKGDRRSNG 360 (1112)
Q Consensus 282 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~k~~~~~~~~~~~~ 360 (1112)
.|.+ | +. ...++++||+|+||..+..+.+... .+...+ ... ...+
T Consensus 215 ~~~~----p---------~~-----~~~dd~~d~ld~~m~~~~~~~~~~~----~~~~~~~~~~------------~~~s 260 (997)
T KOG0334|consen 215 LMKA----P---------NL-----MLVDDEEDPLDAFMEQMVGKVLAKF----SNSSHSKAQV------------VEVS 260 (997)
T ss_pred hccC----c---------cc-----cccccccchHHHHHHHHHHHHHHHh----cCCCcccccc------------cccc
Confidence 1100 0 00 2345679999999999743333221 111111 001 1112
Q ss_pred CCCCcccc-cccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHHHHhhhccCCcCCCcccccccccccccccchHHh
Q 001261 361 EQPKKSSN-KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIA 439 (1112)
Q Consensus 361 ~~~~~~~~-~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~ 439 (1112)
.+..++.. +..+.+++..+...|..+.+.+++ ++...+.+..+....+.+..++|+.+.|.||+++||++..++.
T Consensus 261 ~~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~di~ 336 (997)
T KOG0334|consen 261 KDARKGLNPKLSGFVIEPGLVNGDNEEVELNGS----FDNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRDIK 336 (997)
T ss_pred hhhhccCCccccceeccCCcCCcchhhhhhccc----cchHHHHHHhccccccceeecccccccchhhhhcccccchhHH
Confidence 22333333 255666766655655544444333 4455666666666666889999999999999999999999999
Q ss_pred hcCHHHHHHHHhhcC-ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHH
Q 001261 440 RMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518 (1112)
Q Consensus 440 ~~~~~~~~~~r~~~~-~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT 518 (1112)
.|+.+++..|+..+. |.+.|..||.||++|.++||+..|+..|+++||.+|||||.+|||+||+|+|||++|.||||||
T Consensus 337 ~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT 416 (997)
T KOG0334|consen 337 RMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKT 416 (997)
T ss_pred HHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001261 519 LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 519 ~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp 598 (1112)
++|+|||+.|++.|++...+.||.+|||+|||+||.||+.++.+|++.+++.++|+|||..+..++..+++|+.|+||||
T Consensus 417 ~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tp 496 (997)
T KOG0334|consen 417 LAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTP 496 (997)
T ss_pred hhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
|+++++++.+.+++++|.++.|||+||||+|++|||.|+++.|+.++++++|+++||||||..++.++...++.|+.+++
T Consensus 497 GRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv 576 (997)
T KOG0334|consen 497 GRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIV 576 (997)
T ss_pred chhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCccEEEEecc-cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001261 679 GGRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 679 ~~~~~~~~~i~q~~~~~~-~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~ 757 (1112)
++.++++..+.|.+.++. ...||..|+++|..+...+++||||.++..|+.|...|.+.||+|..|||+.++.+|..++
T Consensus 577 ~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 577 GGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred ccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 999999999999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
.+|++|.+.+||||+++++|||++.+.+||||++|+++++|+||+|||||+|++|+||+|+++.+..++.+|+++|..++
T Consensus 657 ~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 657 EDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred HHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhhhcccCCC-CCCCCcCCChhHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhhhccCC-C
Q 001261 838 QVVPDDLKALADSFMAKVNQGLEQAHGTG-YGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGG-D 915 (1112)
Q Consensus 838 ~~vp~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 915 (1112)
+.+|..|+.|+..|+.+.+.+....+++| |+|+||.|.+...+.++..+..+.+.+|+.+...+++.+.+....++. .
T Consensus 737 ~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~~ 816 (997)
T KOG0334|consen 737 QPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEEELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPR 816 (997)
T ss_pred CCCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHHHHHHHHhhccccCcCCCCCCcccccccccchhhcccc
Confidence 99999999999999999999977777766 999999999998899999999999999998765555444332222211 1
Q ss_pred chhhhHHHHHHHHHHhhhhccCCCCCchhhhcCCCCCCCCCCCCccCcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 001261 916 ISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAI 995 (1112)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~a~~ 995 (1112)
.+.+.... . ... +.+..+.+.+...+...+++.+.+...++. ..+ ....+...|-..|..+
T Consensus 817 ~s~~~~~~-------~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~r~~a~~~A~~~ 877 (997)
T KOG0334|consen 817 ESIQNPTF-------L---QVE-AESKTQEKTLLLGGELNAARPMVPYPVPGT-------AEF-QVIAARDDAEIKALLL 877 (997)
T ss_pred ccccCccc-------c---ccc-ccccchhhhhhccccccccccccccccccc-------ccc-cccchhhhHHHHHhhc
Confidence 11111100 0 000 001112222221111111121111111111 000 0011222233333444
Q ss_pred HHhhhHHHhhhccCCcC-----eEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEE
Q 001261 996 NLQHNLAKIQADAMPEH-----YEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLF 1070 (1112)
Q Consensus 996 ~~~~~~~~~~~~~~~~~-----~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ 1070 (1112)
|++++. ......++. |.++++||||||.+||++|+++++..|.+.|+++|||||+|||||+.|++||++|||+
T Consensus 878 ~~~l~~--~~~~~s~d~~~~~~y~~~~~inD~Pq~~r~~vt~~~~L~~i~e~~~~~it~rg~f~~~gk~p~~gErklyl~ 955 (997)
T KOG0334|consen 878 NAQLNY--QLIDTSSDLILQFIYEAELEINDFPQNARWRVTYKEALLRISEPTAAGITTRGKFNPPGKEPKPGERKLYLL 955 (997)
T ss_pred ccccee--ecccCCccccccceeeeeccccccchhcceeeechhhhhhccCccccceeeccccCCCCCCCCCcchhhhhh
Confidence 444432 222333444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeC
Q 001261 1071 IEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112 (1112)
Q Consensus 1071 ie~~~~~~v~~A~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 1112 (1112)
|||+++..|++|+.+|+++|++++.+++.+.+...+|||.||
T Consensus 956 ve~~~e~~vqra~~e~~r~l~e~~~~~~~~~~~~~~~~y~~~ 997 (997)
T KOG0334|consen 956 VEGPDELSVQRAIEELERLLEEEVVNLFSSLQPSCKGRYLVV 997 (997)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccceeecC
Confidence 999999999999999999999999999887665559999997
No 2
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-85 Score=713.82 Aligned_cols=440 Identities=49% Similarity=0.810 Sum_probs=426.8
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001261 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~ 486 (1112)
.+++.+.+++++|++++|.||.++||.++..|..|+..++..++..+++++.|..+|+|+++|.++|+...|+..+.+..
T Consensus 163 ~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 163 DKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSE 242 (731)
T ss_pred ccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
|.+|||||+++||..++|+|||.+|.||||||.+|++|++-||++++.+..++||.+|||||||+||.||+.++++|++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
+|++++|+|||.+..+|+..|+.|+.|||||||+|++++.... ++|.+++|||||||++|++|||.+++..|..+++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998743 7899999999999999999999999999999999
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-chhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+++|+|+|||||+..++.+++.+|.+|+.+..+.....+..|+|.+.+++. ..|+.+|+..|..+...|++|||+....
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999999999999999999999999999999888899999999988765 5789999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.++.++..|.-.+++|..+||+|+|.+|..+|..|+.+...|||||+++++||||+.+.+|||||+-.+++.|+|||||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHH
Q 001261 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849 (1112)
Q Consensus 806 gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~ 849 (1112)
||+|.+|.+|+|+|+.|..++..|++.|+-.+|.||+.|.+|+-
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999999999999999977663
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-77 Score=683.79 Aligned_cols=426 Identities=47% Similarity=0.855 Sum_probs=394.1
Q ss_pred cccccccccccccchHHhhcCHHHHHHHHhhcCceeccCC-CCCcccccc-----------------------------c
Q 001261 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD-VPKPIKTWH-----------------------------Q 471 (1112)
Q Consensus 422 ~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~p~pi~~~~-----------------------------~ 471 (1112)
.++.+|.++||.+.+....+...+...++....+.+.+.. +|.|+.+|. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677889999998877777777777778777777777655 676665544 4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc-CCCCCCCCCCcEEEEccch
Q 001261 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD-QPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 472 ~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~-~~~~~~~~~~~~LIl~Ptr 550 (1112)
++|+..++..|+..||..|||||+++||.+|+|+|+|++|.||||||++|++|++.|+.. +.....+.+|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 566677777788999999999999999999999999999999999999999999999998 6777888899999999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|||.|+..++..|+..++++++|+|||.+...|+..|.+|++|+|+|||+|++++..+. .+|++++|+||||||+|+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998754 789999999999999999
Q ss_pred ccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc--cccCCccEEEEecccchhHHHHHHH
Q 001261 631 DMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 631 ~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~--~~~~~i~q~~~~~~~~~k~~~ll~~ 707 (1112)
+|||.+++..|+..+ ++++|+|++|||||..+..|+..|+.+|+.+.++... ..+.+|.|++.+++...|...|..+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~l 332 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKL 332 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHH
Confidence 999999999999999 7788999999999999999999999999999998664 6778899999999988999999999
Q ss_pred HHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 708 LGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|..+. ..+++||||+|+..|+.|...|...++++..|||+++|.+|..+|+.|++|.+.|||||++|+||||||+|++
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 98876 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHH
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 850 (1112)
|||||+|.+.++|+||+|||||+|+.|.+++|++..+...+..+++.|....+.||+.|..+...
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988776543
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-75 Score=618.86 Aligned_cols=437 Identities=42% Similarity=0.710 Sum_probs=403.1
Q ss_pred CcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcC-ceec------cCCCCCccccccc-CCCCHHHHHHHHHCC
Q 001261 415 SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIH------GKDVPKPIKTWHQ-TGLTSKIMETIRKLN 486 (1112)
Q Consensus 415 ~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~-~~~~------~~~~p~pi~~~~~-~~L~~~l~~~l~~~~ 486 (1112)
......|...+|+.++||.++.+.+.|++.++..++++.. |.+. ..++|+|..+|.+ |.-.+.++..|++.|
T Consensus 160 ~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~G 239 (629)
T KOG0336|consen 160 KDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTG 239 (629)
T ss_pred hhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhcc
Confidence 3345567888999999999999999999999999998765 5533 2357999999987 678899999999999
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
|.+|||||.||||.+|+|.|+|++|.||+|||++||+|.+-|+..++.. ....+|.+|+++||++||.|+.-++.++.
T Consensus 240 FqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys- 318 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS- 318 (629)
T ss_pred CCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-
Confidence 9999999999999999999999999999999999999999999887643 34468999999999999999988888764
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
+-|+..+|+|||.+..+|+..|++|.+|+|+|||+|.++...+ +.+|..++||||||||+|+||||.+++.+|+-.+
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi 395 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDI 395 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhc
Confidence 4689999999999999999999999999999999999998764 4789999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccc-cCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
+|++|++++|||||..+..|+..|+.+|+.+.++....+ ...+.|.+.+..+..|+..+-.++....+..++||||..+
T Consensus 396 RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 396 RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 999999999999999999999999999999999887654 5568888887888888877777777777788999999999
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcc
Q 001261 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804 (1112)
Q Consensus 725 ~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR 804 (1112)
..|+.|...|.-.|+.+..|||+-.|.+|+..+..|++|.++|||||++++|||||++|++|+|||+|.+++.|+||+||
T Consensus 476 ~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 476 VMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred hhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 001261 805 TGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKV 855 (1112)
Q Consensus 805 ~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~ 855 (1112)
+||+|++|.+++|++.+|...+..|++.|..++|.||++|..|++.|..+.
T Consensus 556 tGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q 606 (629)
T KOG0336|consen 556 TGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQ 606 (629)
T ss_pred cccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999998774
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.2e-74 Score=627.50 Aligned_cols=407 Identities=42% Similarity=0.727 Sum_probs=382.9
Q ss_pred chHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCC
Q 001261 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514 (1112)
Q Consensus 435 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TG 514 (1112)
...+..|++.+|.-|+..+.|.++|..+|.|+.+|.+.+||..+++.|...||..|||||.++||..++++|+|++++||
T Consensus 213 ~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETg 292 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETG 292 (673)
T ss_pred hhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEecc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCC----CCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC
Q 001261 515 SGKTLAFVLPMLRHIKDQPPVAA----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590 (1112)
Q Consensus 515 sGKT~~~llp~l~~l~~~~~~~~----~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~ 590 (1112)
||||++|++|++-.|...|+... ..||.++||+|||+||+||..+..+|++.+|++++.++||.+..+|--.+..|
T Consensus 293 sGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 293 SGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhcc
Confidence 99999999999999988876543 35899999999999999999999999999999999999999999998899999
Q ss_pred CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC----------------------
Q 001261 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---------------------- 648 (1112)
Q Consensus 591 ~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~---------------------- 648 (1112)
|+|+|+|||+|++.|.+. .+-|++|.+||+||||+|+||||.+++..||.+++..
T Consensus 373 ceiviatPgrLid~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred ceeeecCchHHHHHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 999999999999999874 3678999999999999999999999999999988531
Q ss_pred ---CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 649 ---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 649 ---~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+|+++||||||+.++.+++.+|.+|+.++++..+.+...+.|.+.....+.++..|+++|... ...++|||+|+++
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKK 528 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechh
Confidence 799999999999999999999999999999999999999999999999999999999999886 3569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.|+.|++.|.+.||.|+.|||+.+|++|+.++..|++|..+|||||++++||||||+|++|||||++.++++|+||||||
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCccCchHHHHHHHh-hccCCCChhHH
Q 001261 806 GRAGRKGCAITFISEEDAKYSPDLVKALE-LSEQVVPDDLK 845 (1112)
Q Consensus 806 gR~G~~g~~i~~~~~~d~~~~~~i~~~l~-~~~~~vp~~l~ 845 (1112)
||+|+.|+|++|+++.|...+.+|+.+|. ......|++|.
T Consensus 609 gRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 609 GRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred cccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999999999999999998886 33445676654
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.4e-74 Score=605.88 Aligned_cols=451 Identities=39% Similarity=0.662 Sum_probs=410.2
Q ss_pred cccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH
Q 001261 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI 501 (1112)
Q Consensus 422 ~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~i 501 (1112)
+.|+.--+.-|.++-.+..|+.++....|+.+.|.+.|..+|+||.+|.++.+|..+++.|++.|+..|||||.|.||.+
T Consensus 125 i~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv 204 (610)
T KOG0341|consen 125 ITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV 204 (610)
T ss_pred CcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE
Confidence 45665566778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcC---CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc------CceEE
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ---PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM------GVRCV 572 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~---~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~------~i~~~ 572 (1112)
++|+|+|++|-||||||++|.||++...+.+ .++..+.||.+|||||+|+||.|++..+..|+..+ .+++.
T Consensus 205 LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 205 LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 9999999999999999999999999877654 45678899999999999999999999999988765 36788
Q ss_pred EEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEE
Q 001261 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 573 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~i 652 (1112)
+|.||.+..+|+..++.|.+|+|+|||+|.++|.. +..+|+-+.|+++||||+|+||||...+..|+.++...+|++
T Consensus 285 LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 285 LCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred hhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 99999999999999999999999999999999976 457899999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
|||||||..++.|++..+-.|+.++++..+..+-++.|.+.+.....|+.+|++.|.+. ..++||||..+.+++.+..
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999874 4589999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|.-.|+.++.|||+.+|++|...++.|+.|+.+|||||++++.|||+|++.+|||||+|..+++|+||||||||.|++|
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC-ccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhcccCCCCC-CCCcCCChh
Q 001261 813 CAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYG-GSGFKFNEE 877 (1112)
Q Consensus 813 ~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~g~~~~~~ 877 (1112)
.+.+|+.+. +...+.+|...|....|.||+.|..++......--.+.....|..|+ |-|..+.+-
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdC 586 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDC 586 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccC
Confidence 999999875 55677788888999999999998887755443222222233455554 447776543
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.1e-71 Score=664.00 Aligned_cols=456 Identities=45% Similarity=0.766 Sum_probs=413.2
Q ss_pred ccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001261 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 412 ~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~p 490 (1112)
..+..++|....+.||.|+||.+++.+..++.+++..++....+.+ +|..+|.|+.+|.+++|++.|++.|..+||..|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 3566788888889999999999999999999999999999998875 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++||.+++|+|+|++++||||||++|++|++.++..++....+.+|.+|||+||++||.|++..+..|+...+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766666678999999999999999999999999989999
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCc
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q 650 (1112)
+.+++||.....+...+..+++|||+||++|++++... ..+|.++.+|||||||+|++++|..++..|+..+++++|
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999764 367899999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHhcC-CCeEEEEcCcc-cccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLN-KPVEIQVGGRS-VVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~-~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~ 727 (1112)
+|+||||||..+..++..++. .|+.+.++... .....+.+.+.+.....|...|..+|.... ...++||||+++..|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999999999999999886 68888776544 344567888877777888888888887765 567999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCC
Q 001261 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 728 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
+.|+..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||||+|++|||||+|.++.+|+||+||+||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhcccCCCCCCCCcCC
Q 001261 808 AGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKF 874 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 874 (1112)
+|..|.||+|+++.+...+..|++.|....+.||++|..|+.... .+.......+|++.+..+
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 533 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS----NGTERRRWGGYGRFSNNV 533 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc----CCcccccccCCCCCCCCC
Confidence 999999999999999999999999999999999999998865431 122222334555555544
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-70 Score=577.65 Aligned_cols=364 Identities=36% Similarity=0.616 Sum_probs=346.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.++++.+.+++++..+||..||+||.++||.++.|+|||+.|+||||||.+|+||++++++.++. .+.+||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lV 134 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALV 134 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999998653 489999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||||||.||...+..+...+|+++++++||.....|...+.+.++|||||||+|.+++.+. +.++|..+.|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLDE 212 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999854 347899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++|+.|.+.+..|+..++..+|++|||||||..+..+....+.+|+.+.+...-.....+.|.+.+.+...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.... ++.+||||++...+..++-.|...|+.+..+||+|++..|.-.++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 9998754 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|||||+|.+..+|+||+||+||+|..|.+|+|++..|...+..|...+....
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988888888886644
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.4e-66 Score=620.51 Aligned_cols=432 Identities=31% Similarity=0.539 Sum_probs=393.3
Q ss_pred cCCcCCCccccc-ccccccccccchHHhh-cCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001261 413 KLSIVDHSKIDY-QPFRKNFYIEVKEIAR-MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 413 ~~~~~~~~~~~~-~~~~k~f~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~p 490 (1112)
....++|+...+ .+|.++||........ ++..++..+++.++|.+.|..+|.|+.+|.+++|++.+++.|...||..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p 144 (518)
T PLN00206 65 SRVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP 144 (518)
T ss_pred ccCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC
Confidence 345677776655 7789999998777654 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC--CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP--VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~--~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
||+|.++||.++.|+|+|++++||||||++|++|++.++..... .....++++|||+||++||.|++..+..+...++
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999998875321 1223689999999999999999999999999889
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+.+++++||.....++..+..+++|||+||++|++++... ...+.++.+|||||||+|+++||..++..|+..+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~ 300 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQ 300 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CC
Confidence 9999999999999999899999999999999999999765 3678999999999999999999999999999888 46
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHH
Q 001261 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~ 727 (1112)
.|+|+||||+|+.+..++..++.+++.+.++........+.+.+.+.....+...|+.+|..... .+++||||+++..+
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGA 380 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhH
Confidence 89999999999999999999999999998887777777788888888777788888888865432 35899999999999
Q ss_pred HHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC
Q 001261 728 DALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 728 ~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g 806 (1112)
+.|+..|.. .++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|||||+|.++.+|+||+||||
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaG 460 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRAS 460 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccc
Confidence 999999975 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHH
Q 001261 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 807 R~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
|.|..|.|++|+++.+...+..|++.|..+++.+|++|..+.
T Consensus 461 R~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 461 RMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred cCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999999999999999999999887644
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-66 Score=567.30 Aligned_cols=374 Identities=36% Similarity=0.571 Sum_probs=340.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.+++|+..|+++|..+||..|||||..+||..+-|+|++.||.||||||.+|++|+|..|+..|... ...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~--~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV--AATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC--cceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999876432 3568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|||||+||.|+++++++++.+..|.+++++||.+...|-..|...++|||+|||+|+++|.+.. .++|++|.++||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLDE 335 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999997654 37899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEE-ecc--cchhHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE-VRP--ESDRFL 702 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~-~~~--~~~k~~ 702 (1112)
||||++.||..++..|+..++.++|++||||||+..+..|+...|+.|+.|.+.........+.|-|+ +.+ +..+-.
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999988877777877654 332 234545
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..++...+ ...+|||+.++..|..+.-.|.-.|+.+.-+||.++|.+|...+..|+++.++|||||++++|||||++
T Consensus 416 ~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 416 MLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 5555555544 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh-----ccCCCChhH
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL-----SEQVVPDDL 844 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~-----~~~~vp~~l 844 (1112)
|.+||||++|.+...|+||+|||+|+|+.|.+++|+.+.+..++..|++.... .+-.||+..
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~ 561 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEV 561 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999987432 234566543
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-64 Score=604.44 Aligned_cols=363 Identities=44% Similarity=0.741 Sum_probs=336.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|.+++|++.+++.|...||..|||||.++||.++.|+|+|++|+||||||++|++|+++++.... ....+.+|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccCCCceEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999977431 1111129999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+|||+||.|+++++..++... ++.+++++||.+...|...|..+++|||+|||+|++++... .+++.++.+|||||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDE 182 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDE 182 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEecc
Confidence 999999999999999999998 79999999999999999999999999999999999999875 47899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc--ccCCccEEEEecccch-hHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESD-RFL 702 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~-k~~ 702 (1112)
||+|++|||...+..|+..++.++|+++||||||..+..++..++.+|+.+.+..... ....|.|.+..+.... |+.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888875544 7788999998888765 888
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..+|... ...++||||+++..|+.|+..|...|+.+..|||+|+|..|..++..|++|..+||||||+++|||||++
T Consensus 263 ~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 263 LLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 888888754 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhc
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELS 836 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~ 836 (1112)
|++|||||+|.+++.|+||+|||||+|..|.+++|+++. +...+..|.+.+...
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 888888888887654
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-65 Score=569.84 Aligned_cols=391 Identities=42% Similarity=0.711 Sum_probs=366.7
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+++.|.++|.++.+|..-.|...++..++..+|..|||+|+.+||.|..|+|+++||+||||||.+||+|++.+++...+
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCC----C-CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC
Q 001261 535 VAA----G-DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (1112)
Q Consensus 535 ~~~----~-~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~ 609 (1112)
... + ..|.+|||+|||+||.|+|+++.+|.-..++.++.+|||.+...+...+..+|+|+|||||+|.+++...
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 221 1 3599999999999999999999999998999999999999999999999999999999999999999764
Q ss_pred CcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCC----CCcEEEEeccccHHHHHHHHHhcCC-CeEEEEcCccc
Q 001261 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRP----DRQTVLFSATFPRQVEILARKVLNK-PVEIQVGGRSV 683 (1112)
Q Consensus 610 ~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~----~~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i~~~~~ 683 (1112)
.+.|..+.||||||||+|+| |+|.++|..|+..... .+|++|||||+|..+..++..|+.+ .+.+.++..+.
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 36889999999999999999 9999999999988754 6899999999999999999999886 88889999999
Q ss_pred ccCCccEEEEecccchhHHHHHHHHHhhh---cCC-----eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHH
Q 001261 684 VNKDITQLVEVRPESDRFLRLLELLGEWY---EKG-----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~-----~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~ 755 (1112)
...++.|.+.++....|...|+++|.... ..+ .++|||.++..|+.|+..|...++++..|||...+.+|..
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999998655 344 8999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
++..|++|.+.|||||+|++||||||+|.+|||||+|.+..+|+||||||||.|+.|.++.|+...+...+..|++.|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHH
Q 001261 836 SEQVVPDDLKALA 848 (1112)
Q Consensus 836 ~~~~vp~~l~~~~ 848 (1112)
+++.||.||.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998743
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-63 Score=507.03 Aligned_cols=373 Identities=34% Similarity=0.581 Sum_probs=347.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
-.++.+|+++||...+++.+...||.+|+.||+.|||.|+.|+|||+++..|+|||.+|.+.+|+.+.-. ....+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 4678899999999999999999999999999999999999999999999999999999999888765432 23468
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||.|||+||.|+.+.+..++.++++.+..+.||.+..+++..+.-|+++|.+|||++++++.... ...+.+.+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlV 174 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLV 174 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 5667899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRF 701 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~ 701 (1112)
|||||.|++.||..++..|+..++|+.|++++|||+|..+.....+|+.+|+.+.+.........|.|++.-...+ -|+
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999998888888899988766555 488
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|..+... +.-.+++|||||+..++.|.+.+...++.+.++||+|++.+|+.++..|++|..+|||+|++.+||||+|
T Consensus 255 dtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 255 DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 888777654 3457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|++|||||+|.+.+.|+|||||.||.|++|.++-|+..+|...+.+|.+.+.......|-.+
T Consensus 334 qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred eeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 999999999999999999999999999999999999999999999999999988877777654
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.6e-62 Score=535.46 Aligned_cols=372 Identities=33% Similarity=0.565 Sum_probs=340.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..+.|++.++++|..+||..+|++|..+||.++.|+|+|+.|.||||||++|++|+++++...+... .++..+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEE
Confidence 45688899999999999999999999999999999999999999999999999999999999998875443 36888999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||||+||+|++.+++.+.++. ++.+..+.||+........+.++++|+|+|||+|+++|.+..+ +.+..+.++|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlD 237 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLD 237 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEee
Confidence 9999999999999999999988 9999999999999988889999999999999999999988765 345667899999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC-CeEEEEcC--cccccCCccEEEEecccchhH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK-PVEIQVGG--RSVVNKDITQLVEVRPESDRF 701 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i~~--~~~~~~~i~q~~~~~~~~~k~ 701 (1112)
|||+++++||...+..|+..++..+|+++||||.|+.+..+++-.+.. |+++.+.. .......+.|-+++.+...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999988865 87777654 445667789989999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|+.+|.+.....++||||+|...+..++..|....++|..|||+++|..|..++..|++.+..|||||||++||+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 99999999887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|++||.||+|.++.+|+||+|||||.|..|.+++|+.+++..++..|. .+.......|
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK-~lpl~~~e~~ 456 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK-KLPLEEFEFP 456 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh-hCCCcccCCC
Confidence 9999999999999999999999999999999999999999998887776 3333333333
No 15
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-61 Score=509.86 Aligned_cols=366 Identities=36% Similarity=0.575 Sum_probs=334.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..|||++++.+.|+.+|+.+|||+|..|||.|+.|+|+|++|.||||||++|.+|+|+.+...| +|-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999988754 6889999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCc-ccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK-ITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~-~~~l~~i~~vViD 624 (1112)
++|||+||.|+.+.|..+.+.+++++..++||...-.|...|...++|||+|||+|.+++..+.+. ...++++.|+|||
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999999999999999999999999999999876332 2347899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCC--eEEEEcCcccccCCccEEEEecccchhHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP--VEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p--~~i~i~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++.+|...+.-++..++..+|+++||||++..+..+.......+ ..+.......+...+.|.+.+++...+-.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999998877766655553 33333334445567788889999999999
Q ss_pred HHHHHHHhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 703 RLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+|+.+|..+.. .+.++||+++...|+.|+..|...++.+..+||.|+|.+|...+..|+++..+|||||+|++|||||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999988766 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|.|.+|||||+|.+|.+|+||+||++|+|+.|.+++|+++.|..++..|...++..
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998888887776543
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-60 Score=519.12 Aligned_cols=359 Identities=34% Similarity=0.563 Sum_probs=323.3
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|..++ |+++|+.+|..+||...||+|..+||.++.++||++.++||||||++|++|++..|..+.....+...-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677665 55999999999999999999999999999999999999999999999999999998554322222124589
Q ss_pred EEccchhHHHHHHHHHHHHhhh-cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||+||||||.||++++..|... .++.+.+++||.+..+++..++. ++.|+|||||+|.+++..... .+++.++.+||
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999999888 68999999999999999887764 789999999999999976442 34577999999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc--ccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~k 700 (1112)
|||||++++|||..+++.|+..+|.++.+=|||||....+..+++..+.||+.+.+...+. .+..+...+.++....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987765 56667778888999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
+..|+.+|.. ....++|||++|...++.....|... .+.++.+||.|.+..|..++..|.+....||+||||++|||
T Consensus 243 ~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999987 45679999999999999999888765 67899999999999999999999998899999999999999
Q ss_pred CCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
|||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+..+.+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999999999999999999999997665544
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-62 Score=503.56 Aligned_cols=368 Identities=31% Similarity=0.576 Sum_probs=345.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|++++|...++..+...||..|+|+|.++||.++.|+|+|+-|..|+|||.+|++|+|+.+... .+.-+++||
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987642 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||||+||.|+...++.+++.+++.+...+||++...++-.+..+.+++|+|||++++++.. .+..++++.++|+|||
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K---gVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK---GVADLSDCVILVMDEA 236 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc---ccccchhceEEEechh
Confidence 9999999999999999999999999999999999999999999999999999999999976 4578999999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|.|++..|.+.+..++..+++.+|+++||||||-.+..|...++.+|..|.+- .......++|++.++.+..|+..|-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999988764 34455678999999999999888877
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++... .-++.|||||+...++.|++.+.+.||+|+.+|+.|-|+.|..++..|++|.++.||||+.+.|||||+.+++|
T Consensus 316 LfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 77664 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 787 I~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
||||+|.+.+.|+|||||.||.|+.|.||.|++-+|...+..|...|.....++|..+
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999999999999999999999888888643
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-59 Score=553.83 Aligned_cols=369 Identities=34% Similarity=0.560 Sum_probs=332.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~ 542 (1112)
+-.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...+... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999987654321 124689
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++||.|++..+..++..+++.+.+++||.....+...+..+++||||||++|++++... ...+..+.+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lV 162 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVV 162 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEE
Confidence 999999999999999999999999999999999999998888888889999999999999998653 35788999999
Q ss_pred eccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.......+
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 9999999999999999999999874 56789999999999999999999999888877665555667776666666677
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...|..++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++||||
T Consensus 243 ~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 243 MRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 77777777553 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|+|++|||||+|.++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998888888877776543
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-60 Score=522.31 Aligned_cols=363 Identities=33% Similarity=0.537 Sum_probs=333.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+..|.+|+|+..+++.|+..+|..||.||.++||..+.|+|||+.|.||||||++|++|+|++|... .+....|.-||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCceeE
Confidence 45789999999999999999999999999999999999999999999999999999999999998753 24456788899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||.|||+||.|++.++.++++..++.+.+++||.........+. .++|+|||||+|+.++..+.. ++..++.+||||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLD 222 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLD 222 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCC--CCCCcceEEEec
Confidence 99999999999999999999999999999999998777666655 489999999999999987642 466789999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc--ccccCCccEEEEecccchhHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR--SVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~--~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++|||...+..|+.++++.+|++|||||.+..+..+++..+.+|.+|.+... ...+.++.|.+++++..+|+.
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 999999999999999999999999999999999999999999999999998888743 456778999999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
.|..+|.... ..++|||+.|.+.+..++..+... |++++.+||.|+|..|..++..|......||+||++++||||+
T Consensus 303 ~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 9999998754 568999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~ 832 (1112)
|.|++||.||||.++.+|+||+||++|.+..|.|++++++.+ ..++..|.+.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 5555555554
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-58 Score=560.27 Aligned_cols=369 Identities=36% Similarity=0.597 Sum_probs=333.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~ 542 (1112)
...+|.+++|++.|++.|..+||..|||||.++||.++.|+|+|++++||||||++|++|+++++...+... ...+++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 334799999999999999999999999999999999999999999999999999999999999987543221 123589
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++||.|++..+..|+..+++.+..++||.....+...+..+++|||+||++|++++... ....+..+.+||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lV 164 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICV 164 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeE
Confidence 999999999999999999999999999999999999999888888888999999999999988653 235688899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||+|++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 9999999999999999999999876 78999999999999999999999999877776666666677788877777778
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+..|+.++.. ....++||||+++..|+.|+..|...++.+..|||+|++.+|..+++.|++|.++|||||+++++||||
T Consensus 245 ~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 245 QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 8777777754 345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|+|++||||++|.++..|+||+||+||.|..|.||+|+++.+...+..|.+.+...
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888888887776543
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.2e-58 Score=547.41 Aligned_cols=365 Identities=38% Similarity=0.673 Sum_probs=329.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC-CCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA-GDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~-~~~~~~LIl 546 (1112)
+|.+++|++.|++.|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++..+........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875432211 234689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..++..+++.+..++||.+...+...+..+++||||||++|++++... ...|+++.+||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888889999999999999988653 357889999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|+|++++|...+..++..++..+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+...|..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877666666677777777666655555555
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++.. ....++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|
T Consensus 239 l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 4433 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 787 I~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|||++|.++.+|+||+||+||+|..|.|++|++..+...+..|.+.|...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988888888877543
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3e-58 Score=559.19 Aligned_cols=363 Identities=38% Similarity=0.639 Sum_probs=332.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887542 24689999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||||++||.|++..+..|...+ ++.++.++||.....++..+..+++|||+||++|++++.... ..|+++.+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlD 156 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLD 156 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEec
Confidence 9999999999999999998776 799999999999999999999999999999999999987643 578899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|++++|...+..|+..++..+|+++||||+|..+..++..++.+|..+.+.........+.+.+.......+...|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999998888876666666777777777777788888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+|... ...++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|+
T Consensus 237 ~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 237 VRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 8777653 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+|||||+|.+++.|+||+|||||+|+.|.|++|+++.+...+..|.+.+....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999988888888887766543
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-59 Score=513.44 Aligned_cols=368 Identities=34% Similarity=0.584 Sum_probs=323.0
Q ss_pred CCcccccccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP-VAAGDG 540 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~-~~~~~~ 540 (1112)
|-.-..|..+||++.+...|+ .+++..||.+|.++||.|+.|+|++|.++||||||++|++|++++|....+ +....|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 444567999999999999998 599999999999999999999999999999999999999999999987644 344579
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+.+||||||||||.|+|+.++++.+.+. |-.+.+.||.........|.+|++|+|+|||+|+|+|.+. ..+.++.+.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~LR 289 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRLR 289 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeeee
Confidence 9999999999999999999999988764 4456788999999999999999999999999999999764 346678899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcC-------------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC------
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIR-------------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~-------------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~------ 680 (1112)
+||+||||+++++||...|..|+..+. +..|.+|+|||++..+..|+...+.+|+.|..+.
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 999999999999999999999998772 2478999999999999999999999999887221
Q ss_pred -------------------cccccCCccEEEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhc-
Q 001261 681 -------------------RSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH- 737 (1112)
Q Consensus 681 -------------------~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~- 737 (1112)
...++..+.|.+.+++..-++..|..+|.+.. ...++|||+.+.+.++.-+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 02234457788888888888888888887654 3458999999999999888887653
Q ss_pred ---------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHh
Q 001261 738 ---------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 738 ---------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~ 796 (1112)
+..++-+||+|.|++|..+++.|......||+||||++||||+|+|.+||.||+|.+++
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 35688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
+|+||||||+|+|.+|.+++|+.|.+..++..|.+.
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999988766555443
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.3e-58 Score=546.81 Aligned_cols=359 Identities=36% Similarity=0.617 Sum_probs=328.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|..++|++.+++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++.++... ..++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987542 235689999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|||++||.|++..+..++..+ ++.+..++||.+...++..+..+++|+||||++|.+++.... ..+.++.+|||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~lViDE 155 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT---LDLDALNTLVLDE 155 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC---ccHHHCCEEEEEC
Confidence 999999999999999988765 789999999999999999999999999999999999987643 5688999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+|++++|...+..++..+++.+|+|+||||+|+.+..++..++.+|..+.+.... ....+.+.+.......+...|.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876544 3445777777777777888887
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||++++
T Consensus 235 ~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLH-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHh-cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 77764 34578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||++|.++..|+||+|||||+|..|.||+|+++.+...+..|.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999888777777776654
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-58 Score=510.24 Aligned_cols=373 Identities=32% Similarity=0.528 Sum_probs=324.9
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCC------
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV------ 535 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~------ 535 (1112)
+..++.|.+|+|+..++.+|..+||..||+||.-.||+++.| .|+|+.|.||||||++|.+||+..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 556889999999999999999999999999999999999999 7999999999999999999999854432111
Q ss_pred --CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCccc
Q 001261 536 --AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 536 --~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~ 613 (1112)
.....|.+||++|||+||.|+...|..++...+|++..++||.....|-..|...++|||+|||||+.++...+..+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 112234599999999999999999999999999999999999999999889998899999999999999998877778
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcC-----CCCcEEEEeccccH---------------------HHHHHHH
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-----PDRQTVLFSATFPR---------------------QVEILAR 667 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~-----~~~q~il~SAT~~~---------------------~~~~l~~ 667 (1112)
+|..+.+|||||||||+..|+...+..|+..+. ..+|+++||||++- .++.++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 899999999999999999999999999988775 45899999999752 1333443
Q ss_pred H--hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001261 668 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 668 ~--~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ih 745 (1112)
. |...|..|.+.....+...+....+.|+...|-.+|+-+|..+ +|++|||||++..+..|+-+|...+++.+.||
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 3 2346666666555555555555555566666666666666553 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+.|.|.+|...++.|++....|||||+||+||||||+|.+||||-.|.+.+.|+||.|||+|++..|..+.|+.|.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcc
Q 001261 826 SPDLVKALELSE 837 (1112)
Q Consensus 826 ~~~i~~~l~~~~ 837 (1112)
+..|++-|+...
T Consensus 575 ~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 575 LKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHhhcc
Confidence 999999887644
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-57 Score=490.07 Aligned_cols=367 Identities=31% Similarity=0.519 Sum_probs=332.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LI 545 (1112)
.+|+++||.+.|++++.++||.+||-||..+||.++.|+|+++.|.||||||.+|++|+++.|+..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 3445899999
Q ss_pred EccchhHHHHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEe
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||||++||.|+|..+.++...++ ++++-+....+....-..|...++|||+||+.|+.++.... ...+..++++||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEe
Confidence 99999999999999999877653 56666665666665557777889999999999999987643 367889999999
Q ss_pred ccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccc-cCCccEEEEecccchhHH
Q 001261 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 624 DEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~k~~ 702 (1112)
||||.|+..||...+..+..++++..|++|||||+..++..+-..+|++|+.+.+.....+ ...+.|++..+.+.+|+.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999998888766554 456788888899999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC----------
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS---------- 772 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~---------- 772 (1112)
.++.+|.-..-.|++|||+|++..|..|.-+|...|++.+++.|.||...|-.+++.|..|-++||||||
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 9999998777789999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 773 -------------------------VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 773 -------------------------v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
-++||||+.+|.+|||||+|.+...|+||+|||+|++++|.+++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 1458999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHhh
Q 001261 828 DLVKALEL 835 (1112)
Q Consensus 828 ~i~~~l~~ 835 (1112)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 66666654
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.6e-56 Score=530.23 Aligned_cols=362 Identities=36% Similarity=0.586 Sum_probs=324.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|++++|++.+++.|..+||..||++|.++||.++.|+|+|+++|||+|||++|++|+++++...+.. ...++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999998765322 23357899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++||.|++..+..++..+++.+..++||.....+...+..+++|||+||++|++++.... +.+.++.+|||||||
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah 157 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEAD 157 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHH
Confidence 99999999999999999999999999999999998888888889999999999999987643 567889999999999
Q ss_pred hhhccCChhHHHHHHHhcCCCCcEEEEeccccH-HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-chhHHHHH
Q 001261 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLL 705 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~k~~~ll 705 (1112)
+|++++|...+..+...++...|+++||||++. .+..++..++.+|+.+.+.........+.+.+..... ..+...|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999985 5788999999999988876665556667777665554 34555555
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.. ...+++||||+++..|+.|+..|...++.+..+||+|++.+|..++..|++|.++|||||+++++|||||++++
T Consensus 238 ~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 55543 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
||||++|.+...|+||+||+||+|..|.|++|++..|...+..+.+++.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888777777766554
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-55 Score=522.02 Aligned_cols=369 Identities=35% Similarity=0.585 Sum_probs=330.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC--CCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA--GDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~--~~~~~ 542 (1112)
....|..++|++.|++.|..+||..||++|.++|+.++.|+|+|++++||||||++|++|++..+...+.... ...++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3468999999999999999999999999999999999999999999999999999999999999876542211 12578
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+||++||.|++..+..++..+++.+..++||.....+...+. ..++|||+||++|++++... ...|+++.+|
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~l 241 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEVM 241 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCceE
Confidence 9999999999999999999999999999999999998888877775 45899999999999887643 3578899999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD 699 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 699 (1112)
||||||++++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+.......
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh
Confidence 99999999999999999999998854 5799999999999999999999999988877766666667777777777777
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
+...|..++.. ....++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||
T Consensus 322 k~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 322 KYKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 77777766654 23469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|+++++||+|++|.+...|+||+||+||.|..|.+|+|+++.|..++..+.+.+....
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999998888888888876653
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.6e-53 Score=497.85 Aligned_cols=368 Identities=33% Similarity=0.570 Sum_probs=324.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.|+|+|++||||||||++|++|++.++... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2467899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.|++..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..++++++||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViD 177 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILD 177 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEe
Confidence 99999999999999999999888899999999998888888888889999999999998887543 468899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLR 703 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~~~ 703 (1112)
|||++++.+|...+..++..+++..|+|+||||+|+.+..+...++.+|..+.+.........+.+.+...... .+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777665555555566665554432 34444
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 258 l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 258 LCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 4444433 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 784 ~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
++||+|++|.+...|+||+||+||.|..|.|++|+++.+...+..+.+.+.......|
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999999888888887777665444443
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-53 Score=445.37 Aligned_cols=372 Identities=31% Similarity=0.529 Sum_probs=322.7
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
-.+++|.+|+|.+.+++.|..++|.+|+.||..|+|.++.. +++|.++..|+|||.+|.|.||..+.-. ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45789999999999999999999999999999999999976 7899999999999999999999876532 2368
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+++.|+|||+||.|+.+.+.+.++..++.+...+.|.... .-..+ ..+|||+|||.+.+++..- +..++..+.++
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~kl--k~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKL--KCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHH--HhhChhhceEE
Confidence 9999999999999999999999998888888777766111 00011 1489999999999998652 34678899999
Q ss_pred Eeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-ch
Q 001261 622 VMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
|+||||.|++. ||.++-..|...++++.|+|+||||+...+..|+..++.+|..+.+........+|.|++..+.. .+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999998875 69999999999999999999999999999999999999999999999988999999998877765 57
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
|+..|.. |.....-|+.||||.++..+..|+..|...|+.|.++||.|...+|..++..|+.|..+|||+|+|++||||
T Consensus 317 K~~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 317 KYQALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred HHHHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 8888777 444456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhcc-CCCChhHHH
Q 001261 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSE-QVVPDDLKA 846 (1112)
Q Consensus 780 i~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~-~~vp~~l~~ 846 (1112)
++.|++|||||+|. +++.|+||||||||.|++|.+|.|+... ....+..|.+..+... ...|.++.+
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 99999999999997 5899999999999999999999999754 4445556777665443 344555443
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-54 Score=461.03 Aligned_cols=363 Identities=33% Similarity=0.553 Sum_probs=342.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
-..|..+||+..++++|.+.||..|||||+..||.||.++|++..+.||||||.||++||++++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 36799999999999999999999999999999999999999999999999999999999999987642 35789999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||++||.|....++.+++..++++.+++||....+|...|..+.+||++|||+++.+.... ...|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 999999999999999999999999999999999999999999999999999999997765432 25688999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++.|||.+++..++..++.++|+++||||+|..+-.+++..+.+|+.+.+...+.+...+...+..+...+|...|+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888999999999
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.......+++|||.+..+++.+...|...|+.+..++|.|++.-|...+..|..+...+||.|++++||+|||.+..
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
|||||+|.+...|+||+||+.|+|+.|++|.|+.+.+..++.+|.-.|..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999998887765
No 32
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-53 Score=476.54 Aligned_cols=402 Identities=33% Similarity=0.547 Sum_probs=349.5
Q ss_pred HHHHHHhhcCceeccCCCCCccccccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 445 EVSAYRKQLELKIHGKDVPKPIKTWHQ----TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~p~pi~~~~~----~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.....|+.+.+.+.|..+|+|+.+|.. +.....|++.+...+|..|+|+|.+|||.++.+++++.|+|||||||++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 455678888899999999999999997 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh--hhcCceEEEEeCCCChH-HHHHHHhcCCeEEEeC
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA--KVMGVRCVPVYGGSGVA-QQISELKRGTEIVVCT 597 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~--~~~~i~~~~~~gg~~~~-~~~~~l~~~~~IvV~T 597 (1112)
|++|++.+|..........|-+++||.||++||.|+|.++.++. ...++.+.......... .........++|+|.|
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~T 269 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIST 269 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcC
Confidence 99999999987543233457899999999999999999999998 55555544332221111 1111122347999999
Q ss_pred chHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001261 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 598 p~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~ 675 (1112)
|-+|..++.... -..+|..+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++..++.++...+.+++.
T Consensus 270 P~ri~~~~~~~~-~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 270 PMRIVGLLGLGK-LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred HHHHHHHhcCCC-ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 999998886532 2247899999999999999998 89999999988764 56677889999999999999999999999
Q ss_pred EEEcCcccccCCccEEEEe-cccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCeeeecCCCCHHHH
Q 001261 676 IQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDR 753 (1112)
Q Consensus 676 i~i~~~~~~~~~i~q~~~~-~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L-~~~g~~~~~ihg~~~~~~R 753 (1112)
+.++..+.....|.|-..+ .....|+..+.+++.... ..++|||+.+.+.|..|+..| .-.++++.+|||..++.+|
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 9999988887788776544 456688888888888754 469999999999999999999 6678999999999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHH
Q 001261 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l 833 (1112)
..+++.|+.|++.|||||++++||||+.++++|||||+|.+...|+|||||+||+|+.|.||+||+..|..++..|+..+
T Consensus 428 de~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCChhHHHHH
Q 001261 834 ELSEQVVPDDLKALA 848 (1112)
Q Consensus 834 ~~~~~~vp~~l~~~~ 848 (1112)
..++.+||.++..|.
T Consensus 508 ~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 508 EQSGCEVPEKIMGIK 522 (593)
T ss_pred HHcCCcchHHHHhhh
Confidence 999999999876554
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-52 Score=450.62 Aligned_cols=368 Identities=34% Similarity=0.580 Sum_probs=340.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+.+|.+++|++.|++.+...||.+|+.||+.||+.+..|.|+++.+++|+|||.+|+++++.++.. .....++||
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999988733 123568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
++||++||.|+......++..+++++..++||.....+...+.. +++|+|+|||++.+++... ....+.+.++|+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLD 176 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeec
Confidence 99999999999999999999999999999999998866655554 6899999999999998654 2456779999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|+..||..++..|+.+++++.|+++||||+|.++..+...|+.+|+.+.+.........+.|++.-.....|+..|
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899988877777788888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+.. ...+.+||||+...+..|...|..+++.+..+||.|.+.+|..++..|+.|..+|||.|+.+++||||..+.
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 88887 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
+||||++|...++|+||+||+||.|.+|.++.|++..+...+.++.+++.......|...
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 999999999999999999999999999999999999999999999999887777777643
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-51 Score=460.75 Aligned_cols=351 Identities=30% Similarity=0.510 Sum_probs=316.0
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
|.-...|+++-|...++..|+..+|..||+||..|||+++++.|+||++..|+|||++|.+.++..+.- ....++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~q 95 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHIQ 95 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcce
Confidence 555578999999999999999999999999999999999999999999999999999999888876543 235789
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
.|||+|||+||.||...+.+++..| |++|...+||+....+...|+. |.|+|+|||+|..++... .++..++.++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~---~~n~s~vrlf 171 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG---AMNMSHVRLF 171 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc---CCCccceeEE
Confidence 9999999999999999999998855 8999999999999988888776 899999999999998764 4788999999
Q ss_pred EeccchhhhccC-ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc--
Q 001261 622 VMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-- 698 (1112)
Q Consensus 622 ViDEah~~~~~g-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-- 698 (1112)
||||||.|++.+ |..+|..|+..++..+|++.||||.|..+..++.++|.+|..|......+....|.|++......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc
Confidence 999999999854 99999999999999999999999999999999999999999999888888888899988665433
Q ss_pred ------hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 699 ------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 699 ------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
.|+..|-.++.. ++-.+.||||+.+..|+-++.+|...|+.|.+|.|.|.|.+|..++..+++-.++|||+|+
T Consensus 252 sveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred hHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 133333333333 3456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
..+||||-++|++|||.|+|.+.++|.|||||+||.|..|.+++|+.....
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999976543
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-49 Score=430.42 Aligned_cols=377 Identities=28% Similarity=0.465 Sum_probs=302.9
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 475 TSKIMETIRKLNYEKPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...+...|.++++...+|+|.+.+|+++ .++|++|.||||||||++|.+|+++.+...+- +..+|||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEE
Confidence 3445677899999999999999999996 25899999999999999999999998876532 2468999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-----CeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-----TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-----~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|+||++|+.|++.+|..++...|+.|+.+.|..+.......|... .+|+|+|||||.++|.+. +-++|+++.|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 999999999999999999999999988888888877777776642 389999999999999753 4478999999
Q ss_pred EEeccchhhhccCC---hhHHHHHHHhc-------------------------------CCCCcEEEEeccccHHHHHHH
Q 001261 621 LVMDEADRMFDMGF---EPQITRIVQNI-------------------------------RPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 621 vViDEah~~~~~gf---~~~i~~il~~~-------------------------------~~~~q~il~SAT~~~~~~~l~ 666 (1112)
+||||||||++..| .+.++..+... .+..+.++||||+...-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 99999999987543 33333332211 222357889999988777888
Q ss_pred HHhcCCCeEEEEc----CcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHH----hcC
Q 001261 667 RKVLNKPVEIQVG----GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL----KHG 738 (1112)
Q Consensus 667 ~~~~~~p~~i~i~----~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~----~~g 738 (1112)
..-++.|-.+.+. +.-..+..+.+...+.....+...+..+|..+ ...++|+|+++...+..|+..|. ..+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 8888888444433 33344555555555566556666777777653 45699999999999999999887 236
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
+.+-.+.|++....|...+..|..|.+.||||||+++|||||.+|+.|||||+|.+...|+||+|||+|+|+.|.||+++
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll 537 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLL 537 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEee
Confidence 67778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCchHHHHHHHhh----ccCCCChhH-HHHHHHHHHHHhhh
Q 001261 819 SEEDAKYSPDLVKALEL----SEQVVPDDL-KALADSFMAKVNQG 858 (1112)
Q Consensus 819 ~~~d~~~~~~i~~~l~~----~~~~vp~~l-~~~~~~~~~~~~~~ 858 (1112)
+..+...+..+++.... ..+.+|... ..+.+.|.+.+..-
T Consensus 538 ~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~~~~~Yt~ALEsL 582 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKDEDDRYTKALESL 582 (620)
T ss_pred ccccchHHHHHHHHhcccCCcceeecCchHHHHHHHHHHHHHHHH
Confidence 99999998888887654 234455433 33334555555433
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.1e-48 Score=478.78 Aligned_cols=348 Identities=19% Similarity=0.261 Sum_probs=276.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|++.|.+.|...||..||++|.++||.++.|+|+|+++|||||||++|++|+++.+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 36789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCcccccCCceEEEeccchhhhc
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..+..+. ..++++..+.|+++. .+...+..+++|||+||++|...+.. +..+...|+++.+|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 457888777777664 44456677899999999998753322 111123478999999999999876
Q ss_pred cCChhHHHHHHHhc-------CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-------
Q 001261 632 MGFEPQITRIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------- 697 (1112)
Q Consensus 632 ~gf~~~i~~il~~~-------~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------- 697 (1112)
.|..++..++..+ +..+|+|+||||+++... ++..+++.|+.+ +.....+... .+.+.+.+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~-~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGA-RTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCc-eEEEEecCCccccccc
Confidence 3777766555443 467899999999998765 677788888654 3322222221 222221111
Q ss_pred ----------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCCeeeecCCCCHHHHHHHHHH
Q 001261 698 ----------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISD 759 (1112)
Q Consensus 698 ----------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--------g~~~~~ihg~~~~~~R~~~~~~ 759 (1112)
..+...+..++. ...++||||+|+..|+.++..|... +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 122233333333 2569999999999999999998763 5788999999999999999999
Q ss_pred hhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC--CccCchHHHHHHHhh
Q 001261 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE--EDAKYSPDLVKALEL 835 (1112)
Q Consensus 760 F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~--~d~~~~~~i~~~l~~ 835 (1112)
|++|.++|||||+++++||||+++++||||++|.+...|+||+|||||.|+.|.+++|++. .|..++..+.+.+..
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998863 455555555555543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.5e-47 Score=462.69 Aligned_cols=343 Identities=21% Similarity=0.311 Sum_probs=269.6
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 468 TWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~--~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.. +.....+...++. +||..++|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. +..+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4664 4455566666654 89999999999999999999999999999999999999999853 35799
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh------cCCeEEEeCchHHHH--HHHhcCCcccccC
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK------RGTEIVVCTPGRMID--ILCTSGGKITNLR 616 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IvV~Tp~~L~~--~l~~~~~~~~~l~ 616 (1112)
||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+......+....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999854444333 5899999999998877654443 357999999999852 2221111112234
Q ss_pred CceEEEeccchhhhccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhcCC--CeEEEEcCcccccCCccE
Q 001261 617 RVTYLVMDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~~~--p~~i~i~~~~~~~~~i~q 690 (1112)
.+.+|||||||+|++|| |.+.+..+ +...-+..++++||||++..+...+...+.. ++. .. .++...++..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-fr--~Sf~RpNL~y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-FR--QSFNRPNLWY 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE-ee--cccCccceEE
Confidence 58999999999999998 77777653 4555577899999999999887766655543 332 22 1233334432
Q ss_pred EEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 691 LVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 691 ~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
. +..... .+..+..+|.........||||.++..|+.|+..|...|+.+..|||+|++.+|..+++.|..|.++|||
T Consensus 658 ~--Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 658 S--VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred E--EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 2 222222 2345556665444456889999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
||+++++|||+|+|++||||++|.+++.|+|++|||||.|..|.|++||+..|...+..++
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887765555554
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7e-46 Score=462.66 Aligned_cols=367 Identities=19% Similarity=0.220 Sum_probs=286.5
Q ss_pred CHHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 475 TSKIMETI-RKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 475 ~~~l~~~l-~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+..+...+ ..++| .|||+|.+||+.|+.+ +|+|++|+||||||++|++|++..+.. +++++|||
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 34444444 45788 5999999999999975 799999999999999999999988754 57899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEe
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||++||.|++..|.+++..+++++..++|+.+..++ +..+.. .++||||||..| . ....|+++++|||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~----~~v~f~~L~llVI 579 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q----KDVKFKDLGLLII 579 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h----CCCCcccCCEEEe
Confidence 999999999999999998899999999888775443 344444 489999999532 2 1246789999999
Q ss_pred ccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 624 DEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||+|++ .......+..++...|+|+||||+++....++...+.++..+..... ....+.+.+... ... .
T Consensus 580 DEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~--~~~--~ 648 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEY--DPE--L 648 (926)
T ss_pred eccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEec--CHH--H
Confidence 999993 44556677778888999999999887776666666677765543321 122343333222 111 1
Q ss_pred HHH-HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 704 LLE-LLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 704 ll~-~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+.. ++.....+++++|||+++..++.++..|... ++.|..+||+|++.+|..++..|.+|+++|||||+++++||||
T Consensus 649 i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 649 VREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 111 2223335689999999999999999999885 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhh
Q 001261 781 KELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 781 ~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
|++++||++++|. ....|+||+||+||.|+.|.||+|+.+... +...-.+.|.. +.+
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~-l~~~~~~RL~~-------------------~~~-- 786 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKA-LTEDAQKRLEA-------------------IQE-- 786 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCccc-CCHHHHHHHHH-------------------HHH--
Confidence 9999999999986 577999999999999999999999875442 11122222211 111
Q ss_pred hcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCC
Q 001261 860 EQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFE 896 (1112)
Q Consensus 860 ~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~ 896 (1112)
..--|.||.+++.|+++||.|+.+|..|+|+-
T Consensus 787 -----~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~ 818 (926)
T TIGR00580 787 -----FSELGAGFKIALHDLEIRGAGNLLGEEQSGHI 818 (926)
T ss_pred -----hhcchhhHHHHHHHHHhcCCcCCCCCcccCch
Confidence 11237899999999999999999999999974
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9.5e-46 Score=470.90 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=288.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 477 KIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.....+..++| .||++|.+||+.++.+ +|+|++|+||||||.+|+++++..+. .++++||||||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~ 659 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcH
Confidence 34455677898 7999999999999987 89999999999999999998887653 378899999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||.|++..|..++..+++.+.+++|+.+..++...+. ..++||||||+.|. . ...+.++++|||||+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~----~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S----DVKWKDLGLLIVDEE 731 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C----CCCHhhCCEEEEech
Confidence 99999999999988888899999999988877754443 35899999997431 1 245788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|++ |+ ....++..++.+.|+|+||||+++.+..++...+.++..+...... ...+.+.+....... ....
T Consensus 732 hrf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~---~k~~ 801 (1147)
T PRK10689 732 HRF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLV---VREA 801 (1147)
T ss_pred hhc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHH---HHHH
Confidence 996 33 3356677888899999999999888888888888888766543221 223443333222111 1223
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
++..+...++++||||++..++.++..|... ++.+..+||+|++.+|..++..|++|+++|||||+++++|||||+++
T Consensus 802 il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3334445689999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhccc
Q 001261 785 LVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAH 863 (1112)
Q Consensus 785 ~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~ 863 (1112)
+||+++... +...|+|++||+||.|+.|.||+++.... .....-.+.|. .+..
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~-~~~~~~~~rl~-------------------~~~~------ 935 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK-AMTTDAQKRLE-------------------AIAS------ 935 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCc-ccCHHHHHHHH-------------------HHHH------
Confidence 999665543 56789999999999999999997765432 12111111111 1111
Q ss_pred CCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 864 GTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 864 ~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..--|+||.+++.|+++||+|+++|..|+|+-.
T Consensus 936 -~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~ 968 (1147)
T PRK10689 936 -LEDLGAGFALATHDLEIRGAGELLGEEQSGQME 968 (1147)
T ss_pred -hcCCcchHHHHHHHHHhcCCccCCCCccCCCcc
Confidence 122378999999999999999999999999743
No 40
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-47 Score=428.97 Aligned_cols=496 Identities=21% Similarity=0.268 Sum_probs=378.1
Q ss_pred CCCCcccCcCCCCCccCCcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChh
Q 001261 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLP 326 (1112)
Q Consensus 247 ~~r~~~~~~e~~ed~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~ 326 (1112)
.+|+||+.+|+.|+.+|||...+. + ...-+....++.||+.|++++|.+||++..-++.+ .|... .+.
T Consensus 168 edR~WYdnde~~d~~~npf~~~~~-----E----~~l~~~~~ki~~dn~~we~nrl~~sgvv~~~e~~~--~f~~~-e~~ 235 (1042)
T KOG0924|consen 168 EDREWYDNDEGGDEVHNPFSELSR-----E----AELLEKIQKINNDNALWETNRLLTSGVVQRMEVIS--DFLSD-EAR 235 (1042)
T ss_pred cchhhhhcCCccccccCchhcchh-----H----HHHHHHHHhhcchhhhhhhhcccchhhhhcccccC--ccchh-hHH
Confidence 369999999999999999975431 1 01122234489999999999999999999887774 45444 333
Q ss_pred hHHhhhccCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHH
Q 001261 327 EVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRV 406 (1112)
Q Consensus 327 ~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~ 406 (1112)
+ +|||+++|+|+||+.+++|+..+ ++++.|.++|++..+..++.+ ++..
T Consensus 236 ~--llv~~i~~~fld~r~~~~k~~~~---------------------v~pv~d~~sd~a~~a~~gs~l--------v~~~ 284 (1042)
T KOG0924|consen 236 E--LLVHNIVPPFLDGREVFTKQAEP---------------------VIPVRDPTSDLAISARRGSKL--------VRER 284 (1042)
T ss_pred H--hhhhcccCCccccceeeeccccc---------------------ccccCCCchhhhhhhhccccH--------HHHH
Confidence 3 99999999999999999999887 999999999999999988876 7777
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001261 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~ 486 (1112)
+.+.....+..+||++.++.+++.+..+.+.. +.....|+....+..+.+.. .....|.. ... ......
T Consensus 285 r~~~~~~k~~~~~~~~~~~~lgn~~glek~~~----ed~~~~~~~~~~~a~h~k~~-~a~~~fa~---~k~---i~eqrq 353 (1042)
T KOG0924|consen 285 REKEERKKAQKKHWKLAGTALGNVMGLEKKND----EDGKVAYRGSVKFASHMKKS-EAVSEFAS---KKS---IREQRQ 353 (1042)
T ss_pred HHhhhhhhhhhhhhhhcchhhccccccccCcc----cccccccccchhhhhccccc-cccccccc---cch---HHHHHh
Confidence 77777888889999999999999988765432 11111222222222222111 01111211 111 123455
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~ 564 (1112)
|...+.++.+.+..|..++-+||+|+||||||++....++.. |.+..++|.| |.|..|+ .+.+.++
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed---------GY~~~GmIGcTQPRRvAAi---SVAkrVa 421 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED---------GYADNGMIGCTQPRRVAAI---SVAKRVA 421 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc---------ccccCCeeeecCchHHHHH---HHHHHHH
Confidence 667788999999999999999999999999999866555532 4444456666 9999888 4566677
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~ 643 (1112)
..++..+.+-+|++..++++.. ..+.|-++|.|.|+...... .+|..+++||||||| +.++.+....+.+.+.
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~l 495 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVL 495 (1042)
T ss_pred HHhCCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHH
Confidence 7888888888999888887655 55899999999998766543 478999999999999 8888888888888888
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhh---hcCCeEEEE
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW---YEKGKILIF 720 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~---~~~~~vLIF 720 (1112)
.-+.+..+|++|||| +...|+..|.+-|. +++.++.++.. ..+.-.+..+.+...+...... ...|.+|||
T Consensus 496 arRrdlKliVtSATm--~a~kf~nfFgn~p~-f~IpGRTyPV~---~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIf 569 (1042)
T KOG0924|consen 496 ARRRDLKLIVTSATM--DAQKFSNFFGNCPQ-FTIPGRTYPVE---IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIF 569 (1042)
T ss_pred HhhccceEEEeeccc--cHHHHHHHhCCCce-eeecCCccceE---EEeccCchHHHHHHHHhhheEeeccCCCCCEEEe
Confidence 888999999999999 67788887776676 56666665533 2233334445555544433332 245799999
Q ss_pred eCCHHHHHHHHHHHHhc----------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeC
Q 001261 721 VHSQEKCDALFRDLLKH----------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790 (1112)
Q Consensus 721 ~~s~~~~~~l~~~L~~~----------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d 790 (1112)
++.++.++..+..+... ++.++.|++.|++..+.++++....|..+|||||++|+..|.||++.+||+.+
T Consensus 570 mtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 570 MTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTG 649 (1042)
T ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecC
Confidence 99999887777766542 67899999999999999999999999999999999999999999999999844
Q ss_pred C------------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 791 A------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 791 ~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+ |.|.+...||.|||||+| +|+||.+|+..
T Consensus 650 y~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 650 YCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 4 678888899999999998 99999999873
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.1e-45 Score=435.46 Aligned_cols=328 Identities=20% Similarity=0.341 Sum_probs=260.7
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||..|+|+|.++|+.++.|+|+|+++|||||||++|++|++.. +..+|||+||++|+.|++..+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH-
Confidence 589999999999999999999999999999999999999999842 45789999999999998887765
Q ss_pred hhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--ChhH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQ 637 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--f~~~ 637 (1112)
+++.+..+.++....++. ..+.. .++|||+||++|........ .+..+.++.+|||||||++++|| |.+.
T Consensus 74 ---~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 ---SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 478888887777655432 22333 47999999998753220000 01146789999999999999987 6666
Q ss_pred HHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc
Q 001261 638 ITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 638 i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
+..+ +....++.++++||||+++.+...+...+ .+|..+.. +....++...+. ......+..++.+|.....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~-~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR-RKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE-eCCccHHHHHHHHHHHhcC
Confidence 6554 33344778999999999998766555554 34543322 222233322222 2222455567777765445
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
...+||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++||||++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988776666554
No 42
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.4e-43 Score=437.91 Aligned_cols=360 Identities=18% Similarity=0.263 Sum_probs=273.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 479 METIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
...+..++| .||++|.++|+.|..+ +++|++|+||||||++|++|++..+. +|+++|||+||++|
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~L 322 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHH
Confidence 344456888 6999999999999987 47999999999999999999998764 37889999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|.|++..+++++..+++++.+++|+.+..+ ++..+..| ++||||||+.|.+. ..+.++++|||||+|+
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEechhh
Confidence 999999999999999999999999998543 34555554 89999999877432 3578899999999999
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHH
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l 708 (1112)
+. ......+.......++|+||||+.+....+.. +.+.....+...+.....+.+.+.. ......++..+
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~---~~~~~~~~~~i 464 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIP---DSRRDEVYERI 464 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeC---cccHHHHHHHH
Confidence 53 23334444455568999999998766544433 3332222222222222334433322 22233444444
Q ss_pred Hhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001261 709 GEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 709 ~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
.... ...+++|||+.+ ..+..++..|... ++.|..+||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 4433 346999999964 4556777777765 5789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHh
Q 001261 778 LDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN 856 (1112)
Q Consensus 778 lDi~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~ 856 (1112)
||||++++||+|++|.. ...|.|++||+||.|..|.||+|+...........++.+..
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~--------------------- 603 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE--------------------- 603 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH---------------------
Confidence 99999999999999984 67788899999999999999999863322111111222111
Q ss_pred hhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 857 QGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 857 ~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...||.+++.|+++|+.|+.+|..|+|+..
T Consensus 604 -----------~~dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 604 -----------TNDGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred -----------hcchHHHHHHhHhhCCCccccCceecCCCC
Confidence 136899999999999999999999999765
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.5e-43 Score=430.13 Aligned_cols=331 Identities=21% Similarity=0.336 Sum_probs=259.6
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001261 476 SKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 476 ~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
......|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 333445543 89999999999999999999999999999999999999999843 346899999999999
Q ss_pred HHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 555 QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 555 Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|+...+.. +|+.+.++.++......... +.. ..+|+|+||++|....... .....++++|||||||+++
T Consensus 80 dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 80 DQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeCccccc
Confidence 98887765 47888888887776654332 232 4689999999986321111 1234578999999999999
Q ss_pred ccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 631 DMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 631 ~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
+|| |.+.+..+ +....++.++|+||||++..+...+...+ .+|... +.. +...++. +.+.........+
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl~--~~v~~~~~~~~~l 227 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YTLVEKFKPLDQL 227 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcce--eeeeeccchHHHH
Confidence 987 66666544 23334678999999999988765444443 455432 222 2223332 2222333444556
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+.++.. ....++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+++++|||+|+|+
T Consensus 228 ~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 666544 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
+||||++|.+.+.|+||+||+||.|..|.|++||++.|...+..++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765544443
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5e-43 Score=430.60 Aligned_cols=364 Identities=20% Similarity=0.275 Sum_probs=270.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|..||+.|+.+ .++|++|+||||||++|++|++..+.. |+++|||+||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 344566778999 7999999999999976 368999999999999999999987653 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+.+++..+++++.+++|+..... ++..+.. .++|||+||+.|.+. ..+.++++|||||
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDE 365 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEec
Confidence 999999999999999999999999999987665 3444444 479999999977432 3578899999999
Q ss_pred chhhhccCChhHHHHHHHhcC--CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIR--PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~--~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
+|++... +...++.... ...++|+||||+.+....+. .+.+.....+...+.....+...+. .... ...
T Consensus 366 aH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~--~~~~-~~~ 436 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLI--KHDE-KDI 436 (630)
T ss_pred hhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEe--Ccch-HHH
Confidence 9985321 2222222222 26789999999866543332 2222211122211111223333322 2222 244
Q ss_pred HHHHHHhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 704 LLELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 704 ll~~l~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
++..+.... ...+++|||+.. ..+..++..|... ++.|..+||+|++.+|..+++.|++|..+|||||+
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 555555433 456899999876 4566777777653 78899999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHH
Q 001261 773 VAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~ 851 (1112)
++++|||+|++++||+|++|. ....|.|++||+||.|..|.||+++...........++.+.
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~----------------- 579 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMA----------------- 579 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHH-----------------
Confidence 999999999999999999997 57788889999999999999999984322111111111110
Q ss_pred HHHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 852 MAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 852 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
. ...||.+++.|+++|+.|+.+|.+|+|+..
T Consensus 580 -----~----------~~dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 580 -----D----------TLDGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred -----h----------hcccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 0 136899999999999999999999999754
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.7e-43 Score=421.47 Aligned_cols=317 Identities=20% Similarity=0.272 Sum_probs=251.0
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE-EccchhHHHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI-MAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI-l~PtreLa~Q~~~~~~~ 562 (1112)
.||. |||||.++||.++.|+ ++++.++||||||.+|.++++.. .. ....++.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 6887 9999999999999998 57778999999999776555522 11 123566676 66999999999999999
Q ss_pred Hhhhc-----------------------CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---------
Q 001261 563 FAKVM-----------------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------- 610 (1112)
Q Consensus 563 ~~~~~-----------------------~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~--------- 610 (1112)
+++.+ ++++.+++||.+...|+..+..+++|||+|+. ++.+...
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccc
Confidence 99866 48899999999999999999999999999954 4433211
Q ss_pred ----cccccCCceEEEeccchhhhccCChhHHHHHHHhc--CCC---CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc
Q 001261 611 ----KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 611 ----~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~---~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~ 681 (1112)
....|.++++||||||| ++++|...+..|+..+ ++. +|+++||||+|..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 01136889999999999 7899999999999975 332 699999999999888888888888876666554
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhh--hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH-----
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE----- 754 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~----- 754 (1112)
......+.+.+. .....++..++..+... ...+++||||||+..|+.++..|...++ ..|||+|++.+|.
T Consensus 239 ~l~a~ki~q~v~-v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLAAKKIVKLVP-PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cccccceEEEEe-cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 444445555433 23333444444433222 2357899999999999999999998876 8999999999999
Q ss_pred HHHHHhhc----CC-------ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc-cEEEEEecC
Q 001261 755 STISDFKS----NV-------CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISE 820 (1112)
Q Consensus 755 ~~~~~F~~----g~-------~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~~~ 820 (1112)
.+++.|++ |. ..|||||+++++||||+. ++||++.+| .+.|+||+||+||.|.. +.++++++.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999987 889988877 68999999999999985 444666643
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=437.97 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC-CCCCCcEEEEccchhH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA-AGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~-~~~~~~~LIl~PtreL 552 (1112)
|++.+...+.. +|..|||+|.++||.++.|+++|++||||||||++|++|++.++....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 789999999999999999999999999999999999999999887532111 1346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 553 VQQIHSDIRK-------FA----KVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 553 a~Q~~~~~~~-------~~----~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+.|++..+.. ++ ..+ ++.+.+.+|+++.......+...++||||||++|..++... .....|.++.+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999886653 22 122 67888999999988887778888999999999998776432 11235789999
Q ss_pred EEeccchhhhccCChhHHHHHH----HhcCCCCcEEEEeccccHHHHHHHHHhcC-------CCeEEEEcCcccccCCcc
Q 001261 621 LVMDEADRMFDMGFEPQITRIV----QNIRPDRQTVLFSATFPRQVEILARKVLN-------KPVEIQVGGRSVVNKDIT 689 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il----~~~~~~~q~il~SAT~~~~~~~l~~~~~~-------~p~~i~i~~~~~~~~~i~ 689 (1112)
|||||+|.|++..+..++..++ ....+..|+|+||||+++. ..++..+.. .++.+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 9999999999876665554443 3334678999999999762 334333322 122221 11110000010
Q ss_pred EEE-----EecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHH
Q 001261 690 QLV-----EVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 690 q~~-----~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~ 757 (1112)
... ...........+...|.... ..+++||||||+..|+.++..|... +..+.++||+|++.+|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 000 00111112233334443332 3568999999999999999999873 46899999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-CCccEEEEEecC
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFISE 820 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~~~ 820 (1112)
+.|++|.++|||||+++++|||||++++||+|++|.+...|+||+||+||. |..+.+++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999986 434445555443
No 47
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=434.80 Aligned_cols=371 Identities=24% Similarity=0.356 Sum_probs=274.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.|.+++|++.+++.|...||..|+|+|.+|++. +++|+++|+++|||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7799999999999999999999999998752 5689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..|+.+.. +|+++..++|+...... ....++|+||||+++..++.... ..+.++++|||||+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~ 146 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEV 146 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECc
Confidence 9999999999999998653 58999999998754432 23458999999999988876432 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCC-------CeEEEEc--CcccccCCccEE-EE
Q 001261 627 DRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNK-------PVEIQVG--GRSVVNKDITQL-VE 693 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~~~~-------p~~i~i~--~~~~~~~~i~q~-~~ 693 (1112)
|.|.+.++++.+..++..+ .+..|+|+||||+++. ..++.++... |+.+..+ ........-.+. +.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 9999988888888776655 5788999999999763 3343332211 2111110 000000000000 00
Q ss_pred ecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------------
Q 001261 694 VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------------ 737 (1112)
Q Consensus 694 ~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------------ 737 (1112)
..........++..+ ..++++||||+++..|+.++..|...
T Consensus 226 ~~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 226 VPSKDDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CccchHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 001111222222222 24679999999999999998888643
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC-----CCCCHhHHHHHhcccCCC
Q 001261 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-----APNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 738 g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d-----~p~s~~~y~QriGR~gR~ 808 (1112)
...+.++||+|++.+|..++..|++|.++|||||+++++|||+|.+.+||+ |+ .|.+..+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 588999999999999999
Q ss_pred CCc--cEEEEEecCCccCchHHHHHHHhhccCCCChhH---HHHHHHHHHHHhhh
Q 001261 809 GRK--GCAITFISEEDAKYSPDLVKALELSEQVVPDDL---KALADSFMAKVNQG 858 (1112)
Q Consensus 809 G~~--g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l---~~~~~~~~~~~~~~ 858 (1112)
|.. |.||+|+...+. ....+.+++.....++...| ..+...+++.+..+
T Consensus 383 g~d~~G~~ii~~~~~~~-~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~ 436 (737)
T PRK02362 383 GLDPYGEAVLLAKSYDE-LDELFERYIWADPEDVRSKLATEPALRTHVLSTIASG 436 (737)
T ss_pred CCCCCceEEEEecCchh-HHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhC
Confidence 865 899988865432 11122333332222332323 23555666665544
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.7e-42 Score=421.83 Aligned_cols=326 Identities=22% Similarity=0.356 Sum_probs=261.4
Q ss_pred HHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 481 TIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 481 ~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+ .+||..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 499999999999999999999999999999999999999999842 34689999999999998887
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHH---H-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISE---L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-- 633 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~---l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-- 633 (1112)
+.. +|+.+..+.++.+..+.... + ....+|+|+||++|....... .....++++|||||||++.+||
T Consensus 73 l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCc
Confidence 766 47888888888776654322 2 245799999999986432221 1345679999999999999887
Q ss_pred ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHH
Q 001261 634 FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709 (1112)
Q Consensus 634 f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~ 709 (1112)
|.+.+..+.... -+..++|+||||+++.+...+...+. ++..+ +. ++...++. +.+.....+...++.+|.
T Consensus 146 frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~--~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLR--FSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcE--EEEEeCCCHHHHHHHHHH
Confidence 777666553322 24556999999999988766666654 33322 21 22223332 233334556667777776
Q ss_pred hhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEe
Q 001261 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 710 ~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
.. ...++||||+++..|+.++..|...|+++..+||+|+..+|..+++.|.+|.++|||||+++++|||+|+|++||+|
T Consensus 221 ~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 221 KH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred hc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 53 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 790 d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
++|.+++.|+|++||+||.|..|.|++||++.|...+..++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999988876555444
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-43 Score=357.26 Aligned_cols=334 Identities=31% Similarity=0.538 Sum_probs=286.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
-+.|.++-|.+.|+.++-..||..|+.+|.++||..+-|.|+|++|..|.|||.+|.+..|+.|.-- .....+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEE
Confidence 3568889999999999999999999999999999999999999999999999999999999876431 12456899
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+|.||+||.||.++..+|.+++ ++++...+||.++......|++.++|||+|||+++.+.... .++|+++..+|||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehh
Confidence 9999999999999999999988 68899999999999888888888899999999999888764 4789999999999
Q ss_pred cchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc-cccCCccEEEEecccchhHH
Q 001261 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|+|.|+. .+.+..+..|+...+...|+.+||||++..+.-.+++|+.+|..|.+.... .....+.|++....+..|..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 9998875 346788999999999999999999999999999999999999999887653 34455677777677777777
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..+|.. ..-++++||+.+... | . | ..+ ||||++++||+||..
T Consensus 273 kl~dLLd~-LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 273 KLNDLLDV-LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhh-hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCccc
Confidence 77777754 345799999988765 1 0 3 123 899999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~-~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
++.|||||+|.+..+|+||+||+||.|.+|.+|+|++. ++...+..+..........+|+.
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999999975 56667777777666666666654
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-41 Score=421.34 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=262.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+|.+++|++.+.+.|...||..|+|+|.++|+. ++.|+++|+++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577899999999999999999999999999986 7899999999999999999999999998764 25689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..|. .+++++..++|+...... +...++|||+||+++..++.... ..++++++|||||+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~ 147 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEI 147 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCc
Confidence 999999999999998864 478999999998765432 23468999999999988775432 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC--CccEEEEecccc--hhH-
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK--DITQLVEVRPES--DRF- 701 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~--~i~q~~~~~~~~--~k~- 701 (1112)
|.+.+.++...+..++..+....|+|+||||+++ ...++. +++.+.. .....++... .+.+.+...... .++
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 9999999999999999999999999999999986 345554 4433221 1111111100 011111111111 111
Q ss_pred HHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCeeeecCC
Q 001261 702 LRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLHGA 747 (1112)
Q Consensus 702 ~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~~ihg~ 747 (1112)
..+...+.... .++++||||+++..|+.++..|... ...|.++||+
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 11122222211 3579999999999998877666421 2358999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE-------eCCCC-CHhHHHHHhcccCCCC--CccEEEEE
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------FDAPN-HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------~d~p~-s~~~y~QriGR~gR~G--~~g~~i~~ 817 (1112)
|++.+|..++..|++|.++|||||+++++|||+|.+.+||. |+.|. ...+|+||+|||||.| ..|.||+|
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 55544 5679999999999975 57999999
Q ss_pred ecCCc
Q 001261 818 ISEED 822 (1112)
Q Consensus 818 ~~~~d 822 (1112)
++..+
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87644
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-39 Score=400.86 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=253.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|++++|++.+++.+...+|. |+|+|.++++.+.+|+++|+++|||||||++|.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577899999999999999987 999999999999999999999999999999999999988753 46799999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
|+++||.|+++.+.++. .+|+.+..++|+...... +...++|+|+||+++..++.... ..+.++++|||||||
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH 145 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP---YIINDVGLIVADEIH 145 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh---hHHhhcCEEEEecch
Confidence 99999999999999864 468888888887654322 23468999999999988775532 457889999999999
Q ss_pred hhhccCChhHHHHHHHh---cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC-Ccc--EEEEecccchhH
Q 001261 628 RMFDMGFEPQITRIVQN---IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DIT--QLVEVRPESDRF 701 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~---~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~-~i~--q~~~~~~~~~k~ 701 (1112)
.+.+.++...+..++.. ++++.|+|+||||+++. ..++.+ ++.+. +.....+++.. .+. ..+.+.......
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cCCCCCCCCeEEEEEecCeeeeccccccc
Confidence 99988888887777554 45788999999999763 445543 33221 11111111000 000 000111111111
Q ss_pred HHHHHHHHhh-hcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------CCCeeeecCCCCHHHHHH
Q 001261 702 LRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKH-------------------------GYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 702 ~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------g~~~~~ihg~~~~~~R~~ 755 (1112)
..+..++... ..++++||||+++..|+.++..|... ...+.++||+|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1123333332 34679999999999999999888653 125788999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC---------CCCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~---------p~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++|+...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999875554 443 5578899999999999984 57788776543
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.1e-39 Score=388.52 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHH---------HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLA---------FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~---------~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+|.++++.++.|+++|++|+||||||++ |++|.+..+.... ....+++++|++||++||.|+...+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999997 4444554432211 122356899999999999999999887
Q ss_pred Hhhh---cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 563 FAKV---MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 563 ~~~~---~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
.... .++.+.+.+||... .+.....++.+|||+|++.. ...|.++++|||||||.+..++ +.+.
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHHH
Confidence 6544 36677888999873 22233334689999997631 1357889999999999887665 4455
Q ss_pred HHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc---------chhHHHHHHHHH
Q 001261 640 RIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---------SDRFLRLLELLG 709 (1112)
Q Consensus 640 ~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~---------~~k~~~ll~~l~ 709 (1112)
.++..+. ..+|+|+||||++..+..+ ..++++|..+.+.+.. ...+.+.+..... ......++..+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt--~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT--LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc--CCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 5555443 3469999999999888877 5788888888876532 2344544432110 111122334443
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHh-hcCCccEEEecCcccccCCCCCcc
Q 001261 710 EWY--EKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDF-KSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F-~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
... ..+++||||+++..|+.++..|... ++.+..+||+|++. ..++..| ++|..+|||||++|++|||||+|.
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 322 3468999999999999999999887 79999999999985 4667777 689999999999999999999999
Q ss_pred EEEEeC---CCC---------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 785 LVINFD---APN---------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 785 ~VI~~d---~p~---------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
+||+++ .|. |.+.|+||+|||||. +.|.||.|+++.+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 565 888999999999999 6999999999876
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-38 Score=392.71 Aligned_cols=303 Identities=20% Similarity=0.277 Sum_probs=238.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcCceE
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~i~~ 571 (1112)
+-.+.+..|..++++|++|+||||||++|.++++..+. .++++||+.|||++|.|++..+.. +....|..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 44566677778899999999999999999999997752 246899999999999999998754 334456666
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHH-HHHHHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQI-TRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i-~~il~~~~~~~ 649 (1112)
...+++.. .+...+.|+|+|||+|++++... ..|.++++|||||+| ++++.+|...+ ..+...++++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 65555542 23456899999999999988653 478999999999999 78888876544 45566678899
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHH-----HHHHHHHhhhcCCeEEEEeCCH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL-----RLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~-----~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
|+|+||||++... + ..++.++..+.+.+...+ +.+.+.......++. .+..++.. ..+++||||+++
T Consensus 148 qlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p---Ve~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER--L-SSLLPDAPVVESEGRSFP---VEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH--H-HHHcCCCcEEEecCccee---eeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 9999999998653 3 456665555666554332 444443333333322 22222222 358999999999
Q ss_pred HHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC--------
Q 001261 725 EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN-------- 793 (1112)
Q Consensus 725 ~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~-------- 793 (1112)
.+++.++..|.. .++.++.+||+|++.+|..++..|.+|..+|||||+++++|||||+|++|||+++|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 478999999999999999999999999999999999999999999999999999875
Q ss_pred ----------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 794 ----------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 794 ----------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.++|+||+||+||. .+|.||.||++.+
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 345699999999999 6999999998754
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.2e-38 Score=404.49 Aligned_cols=297 Identities=24% Similarity=0.307 Sum_probs=244.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..++|.++.|+|++++||||||||+ |+++++..+.. .++++|||+||++||.|++..++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 577 8999999999999999999999999999995 66666655432 37889999999999999999999999
Q ss_pred hhcCceEEEEeCCCCh-----HHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-------
Q 001261 565 KVMGVRCVPVYGGSGV-----AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~-----~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...++.+..++|+.+. ..+...+.. +++|+|+||++|.+++.. ..+..+++|||||||+|++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchhh
Confidence 9989888888877652 333445554 589999999999988752 3556799999999999986
Q ss_pred ----cCCh-hHHHHHHHhcCC------------------------CCcEEEEeccccHH-HHHHHHHhcCCCeEEEEcCc
Q 001261 632 ----MGFE-PQITRIVQNIRP------------------------DRQTVLFSATFPRQ-VEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 632 ----~gf~-~~i~~il~~~~~------------------------~~q~il~SAT~~~~-~~~l~~~~~~~p~~i~i~~~ 681 (1112)
+||. ..+..++..++. ..|+++||||+++. +.. .++.+++.+.++..
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP 299 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc
Confidence 7885 678888877764 68999999999864 332 34456666777766
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
.....++.+.+.... ++...|+.++... +.++||||++... |+.|+..|...|+++..+||+| ...++
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 666677887776554 5666777777653 3579999999776 9999999999999999999999 23469
Q ss_pred HhhcCCccEEEe----cCcccccCCCCC-ccEEEEeCCCC------CHhHHHHHhcccCC
Q 001261 759 DFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPN------HYEDYVHRVGRTGR 807 (1112)
Q Consensus 759 ~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~d~p~------s~~~y~QriGR~gR 807 (1112)
.|++|+++|||| |++++||||||+ |.+||||++|. ....|.|++||+..
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999999999999 699999999999 89999999999 56889999999973
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-40 Score=350.06 Aligned_cols=317 Identities=31% Similarity=0.537 Sum_probs=252.8
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhc---CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVM---GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~---~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
|.+||+-|.++|+.|.++.|++|-... .++..++.||.-...|+..+..|++|||+||++|.+.+... ...|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeee
Confidence 678999999999999999888876544 45667889999999999999999999999999999998653 367889
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCC------CCcEEEEeccccH-HHHHHHHHhcCCCeEEEEcCcccccCCccE
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRP------DRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~------~~q~il~SAT~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q 690 (1112)
+.|+|+|||+.++..++...|..+...++. ..|.++.|||+.. .+..+...+++-|..+.+.+...++..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999998999999888887763 3689999999753 355677788899988888887777666665
Q ss_pred EEEecccc--hhHHH----------------------------HHHHHHhh--------hcCCeEEEEeCCHHHHHHHHH
Q 001261 691 LVEVRPES--DRFLR----------------------------LLELLGEW--------YEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 691 ~~~~~~~~--~k~~~----------------------------ll~~l~~~--------~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
.+....+. .-+.. .+.+|... ....+.||||.++.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 55432211 11111 11222111 123589999999999999999
Q ss_pred HHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 733 DLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 733 ~L~~~g---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
++.+.| |+|+++||+..+.+|...++.|+.+..++||||++++|||||.++-+|||..+|..-..|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCcc--------------------------------CchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001261 810 RKGCAITFISEEDA--------------------------------KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 810 ~~g~~i~~~~~~d~--------------------------------~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
+-|.+|+|+..... .++..+...|+...++|.+.+.--.+.|-.++..
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~y 683 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVY 683 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEe
Confidence 99999998854322 3445555666666666666555555556555544
Q ss_pred hhh
Q 001261 858 GLE 860 (1112)
Q Consensus 858 ~~~ 860 (1112)
|..
T Consensus 684 gqk 686 (725)
T KOG0349|consen 684 GQK 686 (725)
T ss_pred ccc
Confidence 443
No 56
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.3e-38 Score=363.29 Aligned_cols=362 Identities=21% Similarity=0.289 Sum_probs=287.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 478 IMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+.+.+..+.| +||..|.++|..|... .+-|++|..|||||+++++.|+..+.. |.++.+++||--
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEI 322 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEI 322 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHH
Confidence 3344567887 6999999999999854 468999999999999999999988654 789999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChH---HHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||.|+|..+.+++..+|+++..++|..... +....+..| .+|||+|+..+.+- ..|+++.+||+||-|
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQH 394 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc--------eeecceeEEEEeccc
Confidence 999999999999999999999999976543 445666666 79999999866543 478899999999999
Q ss_pred hhhccCChhHHHHHHHhcCC-CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 628 RMFDMGFEPQITRIVQNIRP-DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
| |+.+-...+..... ...+++||||+-|.. ++...+.+-..-.+...+.....|...+.. ..+...+++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~---~~~~~~v~e 464 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIP---HERRPEVYE 464 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEec---cccHHHHHH
Confidence 9 67777777777766 688999999986653 555666665545555555555566555433 244455555
Q ss_pred HHHhhh-cCCeEEEEeCCHH--------HHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 707 LLGEWY-EKGKILIFVHSQE--------KCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~--------~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.... .+.++.|.|+-++ .+..++..|... ++.+..+||.|+..+++.+|..|++|+++|||||.|++
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 555444 4558999998665 456677777753 67799999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHH-hcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHR-VGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK 854 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~Qr-iGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~ 854 (1112)
.|||+|+++++|++++-...-.-+|+ -||+||.+.+++|++++.+........-++.+..
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~------------------- 605 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE------------------- 605 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh-------------------
Confidence 99999999999999998875555555 5999999999999999987654333333333221
Q ss_pred HhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCCC
Q 001261 855 VNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEED 898 (1112)
Q Consensus 855 ~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~ 898 (1112)
.-+||.+++.|+++||.|+.+|.+|+|+.+-
T Consensus 606 -------------t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f 636 (677)
T COG1200 606 -------------TTDGFVIAEEDLKLRGPGELLGTRQSGLPEF 636 (677)
T ss_pred -------------cCCcceehhhhHhccCCccccCCcccCCcce
Confidence 2479999999999999999999999997653
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=374.25 Aligned_cols=343 Identities=24% Similarity=0.334 Sum_probs=270.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
-|++.+.+.+... |..|||.|.+|||.|.+|+++|++||||||||++++||++..|..........+-.||+|+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3678888888877 999999999999999999999999999999999999999999988632223456789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~ 632 (1112)
.+.+...+..++..+|+.+...+|.++..+....+++.++|+|+||+.|.-+|... .....|.++.+|||||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999999999999999999998888888888999999999997666443 23346889999999999998766
Q ss_pred CChhHHH----HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC--CeEEEEcCcccccCCccEEEEecc---cchhHHH
Q 001261 633 GFEPQIT----RIVQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQLVEVRP---ESDRFLR 703 (1112)
Q Consensus 633 gf~~~i~----~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~--p~~i~i~~~~~~~~~i~q~~~~~~---~~~k~~~ 703 (1112)
..+.++. ++..... +.|.|++|||..+ ....++++... ++.|.-... .....+.-...... ...-...
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHH
Confidence 5554444 3333333 8999999999874 44455655554 444332211 11111111111111 0112233
Q ss_pred HHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 704 LLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 704 ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
++..|..... ...+|||+||+..++.|+..|.+.+ ..+..+||.++.+.|..+.+.|++|..+++|||+.++-||||.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 3333333332 3489999999999999999999976 8999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCC-CCCccEEEEEecC
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGR-AGRKGCAITFISE 820 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR-~G~~g~~i~~~~~ 820 (1112)
++++||+|+.|.+...++||+||+|. .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999996 4555666665554
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-37 Score=397.64 Aligned_cols=307 Identities=21% Similarity=0.261 Sum_probs=228.9
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCC-----CCCCCCcEEEEccchhHHHHHHHHHHHHhh------------hcCceE
Q 001261 509 GVAKTGSGKTLAFVLPMLRHIKDQPPV-----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK------------VMGVRC 571 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~-----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~------------~~~i~~ 571 (1112)
|++|||||||++|+||+|..+..+... ....+.++|||+||++|++|++..++..+. .+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 112468999999999999999998875322 247899
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH----HHHHHHhcCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ----ITRIVQNIRP 647 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~----i~~il~~~~~ 647 (1112)
...+|+++..++...+.+.++|||+||++|..+|... ....|+++.+|||||+|.|++..++.+ +.+|...+..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999998887777778999999999998887642 234689999999999999987655544 4445555567
Q ss_pred CCcEEEEeccccHHHHHHHHHhcC-CCeEEEEcCcccccCCccEEEEecccc-------------------hhHHHH-HH
Q 001261 648 DRQTVLFSATFPRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPES-------------------DRFLRL-LE 706 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~~~~-------------------~k~~~l-l~ 706 (1112)
..|+|+||||+++ ...++..+.. .|+.+.. ........+...+...... .....+ ..
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 7899999999987 4556654443 3655432 2111111222111111100 000111 12
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcC---------------------------------CCeeeecCCCCHHHH
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHG---------------------------------YPCLSLHGAKDQTDR 753 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g---------------------------------~~~~~ihg~~~~~~R 753 (1112)
++.......++||||||+..|+.++..|.+.. +.+.++||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33333346789999999999999999997631 226789999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-CCccEEEEEec
Q 001261 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFIS 819 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~~ 819 (1112)
..+++.|++|.++|||||+++++||||+.|++||+|++|.+..+|+||+||+||. |..+.++++..
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999996 33445554333
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.2e-38 Score=389.04 Aligned_cols=305 Identities=20% Similarity=0.298 Sum_probs=237.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcCceE
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~i~~ 571 (1112)
+-.+.+..+.+++++|++|+||||||++|.++++.... .+.++||++|||++|.|++..+.. +....|..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 34466777788999999999999999999999986521 134799999999999999998854 444467777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChh-HHHHHHHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEP-QITRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~-~i~~il~~~~~~~ 649 (1112)
...+++... ....+.|+|+|||+|++++... ..|+++++|||||+| ++++.++.. .+..++..++++.
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 777776542 2245789999999999988653 478999999999999 567665433 3345667788999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH-HHHHHHhhh--cCCeEEEEeCCHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~-ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|+|+||||++.. .+ ..++.++..+.+.+..+ .+.+.+.......++.. +...|.... ..+.+||||+++.+
T Consensus 151 qlilmSATl~~~--~l-~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDND--RL-QQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHH--HH-HHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999999865 23 45666655566555432 34555443443344331 111222221 35899999999999
Q ss_pred HHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC----------
Q 001261 727 CDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 727 ~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (1112)
++.++..|.. .++.+..+||+|++.+|..++..|.+|..+|||||+++++||||++|++|||++++.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999988765
Q ss_pred --------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 794 --------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 794 --------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.++|+||+||+||. ..|.||.|+++.+
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 336899999999999 5999999998754
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-37 Score=360.20 Aligned_cols=328 Identities=23% Similarity=0.380 Sum_probs=260.5
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 480 ETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
..|+. +||...+|-|.++|..+++|+|+|++.|||.||++||.+|++-. .| .+|||.|..+|......
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 44553 89999999999999999999999999999999999999999843 23 68999999999876666
Q ss_pred HHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG- 633 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g- 633 (1112)
.+.. .|+.+.++.+..+..+.. ..+..| .+|++.+|++|..-...+. ..--.+.+|||||||++.+||
T Consensus 76 ~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~---L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 76 QLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL---LKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH---HHhCCCceEEechHHHHhhcCC
Confidence 5555 588999988887766653 344444 6999999999854322211 123468899999999999998
Q ss_pred -ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecc-cchhHHHHHHH
Q 001261 634 -FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLEL 707 (1112)
Q Consensus 634 -f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~-~~~k~~~ll~~ 707 (1112)
|.+.+..+-... -++..++.||||.++.+...+...+. .+. +.+. ++..++|...+.... ...++. +
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~--sfdRpNi~~~v~~~~~~~~q~~----f 221 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-IFRG--SFDRPNLALKVVEKGEPSDQLA----F 221 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEe--cCCCchhhhhhhhcccHHHHHH----H
Confidence 999988774433 24788999999999998776666554 332 2222 333444443332222 222222 3
Q ss_pred HHh--hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 708 LGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|.. ....+..||||.|+..++.++..|...|+.+..|||||+..+|..+.+.|.++.++|||||.++++|||.|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 332 234567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
||||++|.+++.|+|-+|||||.|....|++||++.|......++..
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999997766555543
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.2e-37 Score=404.85 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=253.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 477 KIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 477 ~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
.+.+.+++ +|| .|+++|.++||.++.|+|++++||||||||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455655 899 699999999999999999999999999999966655554321 36789999999999999
Q ss_pred HHHHHHHHhhhc--CceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 556 IHSDIRKFAKVM--GVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 556 ~~~~~~~~~~~~--~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
++..+..++..+ ++.+..++||.+..++. ..+..| ++|||+||++|.+.+... . ..++++|||||||+|
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceec
Confidence 999999998876 46778888998877663 345554 899999999998776431 1 267899999999999
Q ss_pred hc-----------cCChhHHHH----HHH----------------------hcCCCCc-EEEEeccccHHHHHHHHHhcC
Q 001261 630 FD-----------MGFEPQITR----IVQ----------------------NIRPDRQ-TVLFSATFPRQVEILARKVLN 671 (1112)
Q Consensus 630 ~~-----------~gf~~~i~~----il~----------------------~~~~~~q-~il~SAT~~~~~~~l~~~~~~ 671 (1112)
++ +||.+.+.. |+. .++...| ++++|||+++... ...++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhh
Confidence 86 589888864 432 2344556 6779999986421 224456
Q ss_pred CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCC
Q 001261 672 KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAK 748 (1112)
Q Consensus 672 ~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~g~~~~~ihg~~ 748 (1112)
.++.+.++.......++.+.+.......+ ..|+.+|... +..+||||++... |+.|+..|...|++|..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 77778887766666677777765544434 4677777654 4578999999775 589999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCccEEEec----CcccccCCCCC-ccEEEEeCCCC---CHhHHHHHh-------------cccCC
Q 001261 749 DQTDRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAPN---HYEDYVHRV-------------GRTGR 807 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~d~p~---s~~~y~Qri-------------GR~gR 807 (1112)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. +...|.|-. ||+||
T Consensus 367 ----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred ----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcc
Confidence 8899999999999999999 59999999999 99999999999 777666655 99999
Q ss_pred CCCccEEEEEecCCc
Q 001261 808 AGRKGCAITFISEED 822 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d 822 (1112)
.|..+.++..+...+
T Consensus 443 ~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 443 EGIPIEGVLDVFPED 457 (1638)
T ss_pred cCCcchhHHHhHHHH
Confidence 998877775444443
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-37 Score=366.47 Aligned_cols=322 Identities=21% Similarity=0.223 Sum_probs=248.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|||+|..++|.++.|+ |+.+.||+|||++|++|++.+.. .|+.|+||+||++||.|.+.++..++
T Consensus 100 lg-~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LG-QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hC-CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 55 379999999999999999 99999999999999999998754 37899999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC----------------------CcccccCCceEE
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG----------------------GKITNLRRVTYL 621 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~----------------------~~~~~l~~i~~v 621 (1112)
..+|+++.+++||.+.. ...+..+++|+|+|..-| .|+|..+- ....-...+.|+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 99999999999998643 445556899999999887 44443321 001123567899
Q ss_pred Eeccchhhh-ccC-----------------ChhHHHHHHHhc--------------------------------------
Q 001261 622 VMDEADRMF-DMG-----------------FEPQITRIVQNI-------------------------------------- 645 (1112)
Q Consensus 622 ViDEah~~~-~~g-----------------f~~~i~~il~~~-------------------------------------- 645 (1112)
||||+|.++ |.. +...+..++..+
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999653 100 000000000000
Q ss_pred ------------------CCC-----------------------------------------------------------
Q 001261 646 ------------------RPD----------------------------------------------------------- 648 (1112)
Q Consensus 646 ------------------~~~----------------------------------------------------------- 648 (1112)
..+
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 000
Q ss_pred --CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHH
Q 001261 649 --RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQE 725 (1112)
Q Consensus 649 --~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~ 725 (1112)
..+.+||||.+.....|...+..+++.|-... +. .....+.+.+.+...|+..|+..+..... ..++||||+|+.
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k-p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNR-PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCC-Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 23778999998877778777777765443222 21 22233444556667889999888876542 468999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---Ccc-----EEEEeCCCCCHhH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYED 797 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~ 797 (1112)
.++.|+..|...|+++..|||.++ .++..+..|..+...|||||++++||+||+ +|. +||+|++|.+...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 999999999999999999999865 455556666666678999999999999999 666 9999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEecCCcc
Q 001261 798 YVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 798 y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|+||+|||||.|.+|.|++|++.+|.
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999998664
No 63
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.9e-36 Score=363.40 Aligned_cols=368 Identities=20% Similarity=0.240 Sum_probs=290.3
Q ss_pred HHHHHHHH-HCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 476 SKIMETIR-KLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 476 ~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
......+. .++| .-||-|..||..+... .|-|+||..|.|||.+++-+++..++. |++|.||||
T Consensus 581 ~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVP 651 (1139)
T COG1197 581 TEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVP 651 (1139)
T ss_pred hHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcc
Confidence 33444443 4666 5699999999998743 699999999999999999999988664 789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|.-||.|+|+.|+.-+..+++++..+..-.+..++.. .+..| .||||||+-.| . +...|+++++||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~----kdv~FkdLGLlIID 723 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S----KDVKFKDLGLLIID 723 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C----CCcEEecCCeEEEe
Confidence 9999999999999999999999999888887777643 44444 69999997644 2 22578899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|-|+ |+..-+.-++.++.+..++-||||+-|....++...+.+-..|... +.....|..++. +.++ ...-
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~--~~d~-~~ir 793 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVS--EYDD-LLIR 793 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEe--cCCh-HHHH
Confidence 9999 7778888899999999999999998888777887777766544322 222223333322 2222 2222
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
-.++.+...+|++...+|.++.++.++..|... ...+.+.||.|+..+-+.+|..|.+|.++|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 234445556899999999999999999999886 567899999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhc
Q 001261 783 LELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 783 v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~ 861 (1112)
++++|+.+.... .++..|--||+||..+.++||+++-+.. .+-..-.+.| ..++
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k-~lT~~A~kRL-------------------~aI~----- 928 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK-ALTEDAEKRL-------------------EAIA----- 928 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc-ccCHHHHHHH-------------------HHHH-----
Confidence 999999888775 6778888899999999999997775432 2222222222 2221
Q ss_pred ccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 862 AHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 862 ~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
+...-|+||.++.+|+++||+|+++|..|+|+-.
T Consensus 929 --~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~ 962 (1139)
T COG1197 929 --SFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIE 962 (1139)
T ss_pred --hhhhcCchHHHHhcchhccccccccCccccCchh
Confidence 1223489999999999999999999999999743
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.4e-36 Score=347.63 Aligned_cols=304 Identities=21% Similarity=0.236 Sum_probs=215.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-----
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV----- 580 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~----- 580 (1112)
++|++||||||||++|++|++..+.. +.+.+++|++||++|+.|++..+..++.. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 23568999999999999999999997542 33444443321
Q ss_pred ------HHHH-HHHh------cCCeEEEeCchHHHHHHHhcCC-cccccC--CceEEEeccchhhhccCChhHHHHHHHh
Q 001261 581 ------AQQI-SELK------RGTEIVVCTPGRMIDILCTSGG-KITNLR--RVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 581 ------~~~~-~~l~------~~~~IvV~Tp~~L~~~l~~~~~-~~~~l~--~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
.... .... -...|+|+||+.++..+..+.. ....+. ..++|||||||.++++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0111 1111 1357999999999887754211 111111 23799999999998765544 5555555
Q ss_pred cC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEe-c-ccchhHHHHHHHHHhhhcCCeEEEEe
Q 001261 645 IR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-R-PESDRFLRLLELLGEWYEKGKILIFV 721 (1112)
Q Consensus 645 ~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~-~-~~~~k~~~ll~~l~~~~~~~~vLIF~ 721 (1112)
+. .+.|+|+||||+|..+..++..+...+....+...... ....+.+.. . ....+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 57899999999998777776665443321111111100 011122211 1 12234455555554444568999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHH----HHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCH
Q 001261 722 HSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDREST----ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~----~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~ 795 (1112)
+++..|+.++..|.+.+. .+..+||++++.+|..+ +..|++|...|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8999999999999999999999995 8899998777 7
Q ss_pred hHHHHHhcccCCCCCc----cEEEEEecCCcc
Q 001261 796 EDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 796 ~~y~QriGR~gR~G~~----g~~i~~~~~~d~ 823 (1112)
..|+||+||+||.|+. |.+|+|....+.
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8999999999998754 367777665544
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.7e-35 Score=378.68 Aligned_cols=291 Identities=22% Similarity=0.334 Sum_probs=228.8
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.+.+.......|+++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 34444434457999999999999999999999999999997 77777766543 26899999999999999999
Q ss_pred HHHHHhhhcCceEE---EEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGVRCV---PVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~---~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++.+. +++||.+..++ +..+.. +++|||+||++|.+.+... .. ++.+|||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChHhhhh
Confidence 99999988876654 46788877654 334444 4899999999998877531 11 789999999999998
Q ss_pred -----------cCChhH-HHHHH----------------------HhcCCCCc--EEEEecc-ccHHHHHHHHHhcCCCe
Q 001261 632 -----------MGFEPQ-ITRIV----------------------QNIRPDRQ--TVLFSAT-FPRQVEILARKVLNKPV 674 (1112)
Q Consensus 632 -----------~gf~~~-i~~il----------------------~~~~~~~q--~il~SAT-~~~~~~~l~~~~~~~p~ 674 (1112)
+||... +..++ ..++..+| +++|||| +|..+. ..++.+++
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHccccc
Confidence 788874 45543 23445555 5779999 565543 23456666
Q ss_pred EEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ---EKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~---~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
.+.++.......++.+.+..... +...|+.+|... ..++||||++. +.|+.|+..|...|+++..+||+|++
T Consensus 291 ~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 291 GFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred ceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 67777666666677776654332 245566666553 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCccEEEe----cCcccccCCCCC-ccEEEEeCCCCC
Q 001261 752 DRESTISDFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPNH 794 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~d~p~s 794 (1112)
.+++.|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 6899999999999999 599999999999 899999999974
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.7e-35 Score=357.23 Aligned_cols=324 Identities=20% Similarity=0.258 Sum_probs=242.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+++.+..|+ |+.+.||+|||++|++|++..... |+.|+||+||+.||.|.+.++..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 565 89999999999998887 999999999999999999866543 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+++.+++||.+...+... ..+++|+||||++| .++|..+- .....+..+.++||||||.|+ |..
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 9999999999999984444333 34699999999999 55554321 111346788999999999874 100
Q ss_pred ---------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+...
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|....-..| .
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~ 381 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-F 381 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-H
Confidence 01344444433222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
..++-++.......+........ .++.....|+..++..+.... ...++||||+|+..++.|+..|...|+++..+||
T Consensus 382 ~~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 382 EVYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HHhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 23333332222222222222221 233455678888888887643 4568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCC---CCcc-----EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDV---KELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi---~~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
.+.+.++..+...+..| .|||||++++||+|| ++|. +||+|++|.+...|+||+|||||.|.+|.|++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888887777766 799999999999999 6998 9999999999999999999999999999999999
Q ss_pred cCCccC
Q 001261 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+..|..
T Consensus 539 s~eD~l 544 (790)
T PRK09200 539 SLEDDL 544 (790)
T ss_pred cchHHH
Confidence 987653
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.5e-35 Score=353.79 Aligned_cols=301 Identities=17% Similarity=0.160 Sum_probs=222.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
...|+++|.++++.++.+.++|+++|||+|||+++++.+...+.. ...++||||||++|+.||...+.+|+..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 458999999999999999999999999999999765533222221 1347999999999999999999998754
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
....+..+++|.... .+.+|+|+||++|..... ..+.++++|||||||++.. ..+..++..++
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~ 247 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLD 247 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhh
Confidence 445566677776432 347999999999875431 2467899999999999864 45677777787
Q ss_pred CCCcEEEEeccccHHHH-HHH-HHhcCCCeEEEEcCcccccC------CccEEE---------------------Eeccc
Q 001261 647 PDRQTVLFSATFPRQVE-ILA-RKVLNKPVEIQVGGRSVVNK------DITQLV---------------------EVRPE 697 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~-~l~-~~~~~~p~~i~i~~~~~~~~------~i~q~~---------------------~~~~~ 697 (1112)
+.+++++||||++.... .+. ..+++ |+...+........ .+.... .+...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 78899999999975322 111 11222 22222211100000 000000 00111
Q ss_pred chhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Cccc
Q 001261 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~ 775 (1112)
..+...+..++.... .+.++||||++.++++.|+..|...|+++..+||+|++.+|..+++.|++|...||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 122223333333322 34689999999999999999999999999999999999999999999999999999998 8999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|+|+|++++||++.++.+...|+||+||++|.+..+
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999999999987544
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.4e-35 Score=350.34 Aligned_cols=321 Identities=20% Similarity=0.251 Sum_probs=231.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+|+|.|++..+..++..|+.++||+|||++|++|++.+.+. |+.++||+||++||.|++.++..++..+|+.
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 44555555555545557999999999999999998876553 4569999999999999999999999999999
Q ss_pred EEEEeCCCC---hHHHHHHHhcCCeEEEeCchHH-HHHHHhc---CCcccccCCceEEEeccchhhhc-cC---------
Q 001261 571 CVPVYGGSG---VAQQISELKRGTEIVVCTPGRM-IDILCTS---GGKITNLRRVTYLVMDEADRMFD-MG--------- 633 (1112)
Q Consensus 571 ~~~~~gg~~---~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~---~~~~~~l~~i~~vViDEah~~~~-~g--------- 633 (1112)
+.+++++.. ..........+++|+||||++| .++|..+ ......+..+.++||||||.|+- ..
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 998887632 2223344446799999999999 5555332 11123467899999999998742 10
Q ss_pred ------ChhHHHHHHHhcCCC-----------------------------------------------------------
Q 001261 634 ------FEPQITRIVQNIRPD----------------------------------------------------------- 648 (1112)
Q Consensus 634 ------f~~~i~~il~~~~~~----------------------------------------------------------- 648 (1112)
+...+..++..+.++
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 111111222222111
Q ss_pred ----------------------------------------------------------CcEEEEeccccHHHHHHHHHhc
Q 001261 649 ----------------------------------------------------------RQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 649 ----------------------------------------------------------~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
..+.+||+|.......|. .++
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETY 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHh
Confidence 113444444433333332 233
Q ss_pred CCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 671 NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 671 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
+-++.+.+...+........ ..+.....|+..++..+.... ...++||||+++..++.|+..|...|+++..+||.+.
T Consensus 381 ~l~v~~IPt~kp~~r~d~~d-~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 381 SLSVVKIPTNKPIIRIDYPD-KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 33333222222222222111 234455678888888887653 4568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCC---------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVK---------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+.++..+...|+.| .|+|||++++||+||+ ++.+||+|++|....+ +||+|||||.|.+|.+++|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99988887777766 7999999999999999 9999999999998776 9999999999999999999998
Q ss_pred CccC
Q 001261 821 EDAK 824 (1112)
Q Consensus 821 ~d~~ 824 (1112)
.|.-
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 7654
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.5e-34 Score=342.94 Aligned_cols=324 Identities=23% Similarity=0.283 Sum_probs=242.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+++.+..|+ |+.++||+|||++|++|++..... |..|+||+||+.||.|.+.++..++
T Consensus 53 lg-~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LG-MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hC-CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 55 368999999999888776 999999999999999999644432 4569999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhhc-c-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMFD-M------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~~-~------- 632 (1112)
..+|+++.+++||.+.......+ .++|+|+||++| .++|..+- .....++.+.++||||+|+|+- .
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999999876554443 489999999999 88886541 1123578899999999998752 1
Q ss_pred -C-------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 633 -G-------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 633 -g-------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
| .......|...+..+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 1 000111111111100
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 358 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF-E 358 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH-H
Confidence 11334444443222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++.+.....+........ ..+.....|+..++..+..... +.++||||+++..++.|+..|.+.|+++..+||
T Consensus 359 ~iY~l~vv~IPtnkp~~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna 437 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPVIRKDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNA 437 (745)
T ss_pred HHhCCCEEEeCCCCCeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeC
Confidence 23333332222222222111111 2234455688888777755443 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC-------ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE-------LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~-------v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
. +..|+..+..|..+...|+|||++|+||+||+. ..+||++++|.+...|.|++||+||.|.+|.+++|++
T Consensus 438 ~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 438 K--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred C--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 8 889999999999999999999999999999998 5699999999999999999999999999999999999
Q ss_pred CCccCc
Q 001261 820 EEDAKY 825 (1112)
Q Consensus 820 ~~d~~~ 825 (1112)
..|.-+
T Consensus 516 ~eD~l~ 521 (745)
T TIGR00963 516 LEDNLM 521 (745)
T ss_pred ccHHHH
Confidence 876543
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7e-33 Score=307.82 Aligned_cols=322 Identities=23% Similarity=0.319 Sum_probs=236.4
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...++.+|......++.+ ++|++.|||.|||+++++-|...+... .+ ++|||+||+-|+.|++..|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457888999888887776 899999999999999999888887764 23 899999999999999999999876
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~ 644 (1112)
.-.-.++.++|-....+....+.. ..|+|+||..+.+-|..+ ..++.++.+||+|||||-.. ..+. .+.+....
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv-~Va~~y~~ 158 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYV-FVAKEYLR 158 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHH-HHHHHHHH
Confidence 555567777777766666555544 799999999998777653 37899999999999998542 2222 22222333
Q ss_pred cCCCCcEEEEeccccHHHHHH---HHHhcCCCeEEE----------------------E---------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEIL---ARKVLNKPVEIQ----------------------V--------------------- 678 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l---~~~~~~~p~~i~----------------------i--------------------- 678 (1112)
...++.+|++|||+....+.+ +..+.-.-+.+. +
T Consensus 159 ~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 159 SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 345667999999985443221 111000000000 0
Q ss_pred --------cCcccc-------c-------CC-------------------------------------------------
Q 001261 679 --------GGRSVV-------N-------KD------------------------------------------------- 687 (1112)
Q Consensus 679 --------~~~~~~-------~-------~~------------------------------------------------- 687 (1112)
+..... . ..
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 000000 0 00
Q ss_pred ------------------ccEEEEecccchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCee-eec
Q 001261 688 ------------------ITQLVEVRPESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCL-SLH 745 (1112)
Q Consensus 688 ------------------i~q~~~~~~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ih 745 (1112)
............|+..+.+++...+. ..++|||++.+.+++.+..+|.+.+..+. .+-
T Consensus 319 k~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFi 398 (542)
T COG1111 319 KAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398 (542)
T ss_pred HHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEe
Confidence 00000011122355556666666552 34899999999999999999999987774 332
Q ss_pred --------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 746 --------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 746 --------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.||+|.++..+++.|++|.++|||||+|++.|||||.+++||+|++-.|...++||.|||||. +.|.+|+|
T Consensus 399 GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 399 GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred eccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred ecCC
Q 001261 818 ISEE 821 (1112)
Q Consensus 818 ~~~~ 821 (1112)
++..
T Consensus 478 vt~g 481 (542)
T COG1111 478 VTEG 481 (542)
T ss_pred EecC
Confidence 9987
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=319.14 Aligned_cols=337 Identities=21% Similarity=0.316 Sum_probs=271.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
...++.+++.+...|+..|+..++|+|.-|+.. ++.|.|++++++|+||||++.-++-+..++. .|.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 356788999999999999999999999999987 6699999999999999999988887776654 37789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH----HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI----SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~----~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||..+||+|-|..|+.-...+|+.+..-+|-+-+...- ......++|||+|++-+-.+|... ..+.+++.||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVV 343 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVV 343 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEE
Confidence 99999999999999998889999988877765333221 111234799999999986666553 4788999999
Q ss_pred eccchhhhccCChhHHHH---HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEE-Eecccc
Q 001261 623 MDEADRMFDMGFEPQITR---IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPES 698 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~---il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~-~~~~~~ 698 (1112)
|||+|.+-+...++.+.- -+..+-+..|+|.+|||..+. ..++..+.-.++.+ ..+++ ++..++ ......
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--~~RPV---plErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--DERPV---PLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--cCCCC---ChhHeeeeecCch
Confidence 999999877655554444 455566889999999998654 45777777666543 23332 233344 444577
Q ss_pred hhHHHHHHHHHhhh-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 699 DRFLRLLELLGEWY-------EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~-------~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
+|+..+..+...-+ -.|++|||++|+..|..|+..|...|+.+.+||+||+..+|..+...|.++.+.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 88877777665433 24799999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccEEEE---eCCCC-CHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 772 SVAARGLDVKELELVIN---FDAPN-HYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~---~d~p~-s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
-+++.|+|+|.-.+|+. ++.-| ++..|.|++||+||.+. .|.+|+++-+.
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999998665542 34444 89999999999999875 58999888764
No 72
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.2e-34 Score=355.75 Aligned_cols=299 Identities=25% Similarity=0.357 Sum_probs=214.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE--cc----chhHHHHHHHHHHH-Hhh
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM--AP----TRELVQQIHSDIRK-FAK 565 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl--~P----treLa~Q~~~~~~~-~~~ 565 (1112)
+..+.+..|..++.+||+|+||||||++ +|.+.... +.+..++|+ -| +++||.|+..++.. ++.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-------GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3445666677777888889999999984 67443321 123333343 36 45777777776654 222
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~ 644 (1112)
..|+.+ ... . ....++.|+|||||+|++.+... ..|.++++||||||| ++++++|...+..-+..
T Consensus 149 ~VGY~v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 149 CVGYKV----RFN---D---QVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLP 214 (1294)
T ss_pred eeceee----cCc---c---ccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhh
Confidence 222221 111 1 12356899999999999998653 358999999999999 79999987653332333
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc------chhHHHHHHHHHhh--hcCCe
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEW--YEKGK 716 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~--~~~~~ 716 (1112)
.+++.|+|+||||++. ..|+..|.+.|+ +.+.+...+ +.+.+..... .+.+..++..+... ...|.
T Consensus 215 ~rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 215 RRPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred cCCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 3578999999999975 467777777775 556555432 3333322211 12333444433322 24578
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCC---eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC--
Q 001261 717 ILIFVHSQEKCDALFRDLLKHGYP---CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~g~~---~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-- 791 (1112)
+||||++..+++.++..|...++. ++.+||+|++.+|..++.. .|..+|||||+++++|||||+|.+||++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987765 6789999999999999886 478999999999999999999999999863
Q ss_pred -------------C---CCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 792 -------------P---NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 -------------p---~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
| .|.++|+||+|||||. .+|.||.||++.+.
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 59999999997653
No 73
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-32 Score=347.52 Aligned_cols=324 Identities=23% Similarity=0.322 Sum_probs=240.6
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+++|.+++..++.+ ++|+++|||+|||++++++++..+.. .+.++||||||++|+.||...+..++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999988887 99999999999999999999887742 356899999999999999999999875
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
..+..++.++|+...... ..+..+++|+|+||+.|...+... ...+.++++|||||||++........+...+...
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 545577777887766543 344456899999999997766543 2467889999999999986543333344444444
Q ss_pred CCCCcEEEEeccccHH---HHHHHHHhcCCCeEE--------------------EEcCc---------------------
Q 001261 646 RPDRQTVLFSATFPRQ---VEILARKVLNKPVEI--------------------QVGGR--------------------- 681 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~---~~~l~~~~~~~p~~i--------------------~i~~~--------------------- 681 (1112)
.+...+++||||+... +..++..+....+.+ .+.-.
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5567799999997322 222222111100000 00000
Q ss_pred ---cccc--C-------------CccE-----------------------------------------------------
Q 001261 682 ---SVVN--K-------------DITQ----------------------------------------------------- 690 (1112)
Q Consensus 682 ---~~~~--~-------------~i~q----------------------------------------------------- 690 (1112)
.... . .+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 0000 0 0000
Q ss_pred -------------------EEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC-
Q 001261 691 -------------------LVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA- 747 (1112)
Q Consensus 691 -------------------~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~- 747 (1112)
...+.....|+..|..+|.... ..+++||||++...|+.|+..|...|+.+..+||.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 0000112345566666665543 45799999999999999999999999999999986
Q ss_pred -------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 748 -------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 748 -------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
|++.+|..++..|++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+|+|++.
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999987 5889988876
Q ss_pred Cc
Q 001261 821 ED 822 (1112)
Q Consensus 821 ~d 822 (1112)
..
T Consensus 479 ~t 480 (773)
T PRK13766 479 GT 480 (773)
T ss_pred CC
Confidence 53
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.7e-32 Score=313.61 Aligned_cols=292 Identities=19% Similarity=0.220 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc---
Q 001261 493 IQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM--- 567 (1112)
Q Consensus 493 iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~--- 567 (1112)
+|.++++.+..+.+ +++++|||||||++|++|++.. +..+||++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7889999999999999999842 3467999999999999999999988644
Q ss_pred -CceEEEEeCCCChH--HHH-----------------HH-HhcCCeEEEeCchHHHHHHHhcC---C--cccccCCceEE
Q 001261 568 -GVRCVPVYGGSGVA--QQI-----------------SE-LKRGTEIVVCTPGRMIDILCTSG---G--KITNLRRVTYL 621 (1112)
Q Consensus 568 -~i~~~~~~gg~~~~--~~~-----------------~~-l~~~~~IvV~Tp~~L~~~l~~~~---~--~~~~l~~i~~v 621 (1112)
++.+..+.|.+... ... .. ....+.|+++||+.|..++.... . ....+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 45555555532111 000 00 12357889999998866543211 0 11125789999
Q ss_pred EeccchhhhccC-----ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh--cCCCeEEEEcCcccc----------
Q 001261 622 VMDEADRMFDMG-----FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV--LNKPVEIQVGGRSVV---------- 684 (1112)
Q Consensus 622 ViDEah~~~~~g-----f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~--~~~p~~i~i~~~~~~---------- 684 (1112)
||||+|.+...+ |...+..++.......++|++|||+++.+...+... ++.|+.+.. +....
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~-g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPID-GEKYQFPDNPELEAD 228 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeec-CcccccCCChhhhcc
Confidence 999999865432 222444455544455799999999999877776665 555553322 22000
Q ss_pred ---------cCCccEEEEecccchhH---HHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcC--CCeeeecCC
Q 001261 685 ---------NKDITQLVEVRPESDRF---LRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHG--YPCLSLHGA 747 (1112)
Q Consensus 685 ---------~~~i~q~~~~~~~~~k~---~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g--~~~~~ihg~ 747 (1112)
...+.+.+.. ....+. ..++..+.... ..+++||||+++..++.++..|...+ +.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0133333332 222222 23334333322 45699999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g 806 (1112)
+++..|..+ +...|||||+++++||||+.+ +|| ++ |.+...|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998765 378899999999999999987 566 55 889999999999997
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-33 Score=297.97 Aligned_cols=334 Identities=22% Similarity=0.368 Sum_probs=251.3
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 477 KIMETIRK-LNYEKP-MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 477 ~l~~~l~~-~~~~~p-t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
.+..+|++ +|+.+. ++.|.+|+..+..+ +||.+++|||+||+++|.||.|.+ +.++||+.|..+|+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 34456654 676654 79999999998865 699999999999999999999965 33889999999998
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHH---hcCCeEEEeCchHH-----HHHHHhcCCcccccCCceEEE
Q 001261 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISEL---KRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l---~~~~~IvV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vV 622 (1112)
......+.++ .+.+..+....+..+. +..| +....|++.||+.- .++|.. +.+-+-+.|||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~v 146 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEE
Confidence 8666665553 4555555544443332 2333 34578999999864 333332 12334578999
Q ss_pred eccchhhhccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHH--HHHhcCCCeEEEEcCcccccCCccEEEEec-
Q 001261 623 MDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEIL--ARKVLNKPVEIQVGGRSVVNKDITQLVEVR- 695 (1112)
Q Consensus 623 iDEah~~~~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l--~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~- 695 (1112)
|||||...+|| |.+.+..+ +...-++...|.+|||.++.+..- ....+.+|+-+.-. +....++..-+.+.
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~ 224 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKS 224 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHH
Confidence 99999999998 88888776 334446778999999999988654 34456788754422 11222221111100
Q ss_pred ccchhHHHHHHHHHhhhc------------CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001261 696 PESDRFLRLLELLGEWYE------------KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~------------~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
.-.+-+..|.++....+. .|--||||.|++.|+.++-.|...|+++..||.|+...+|..+-+.|.++
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 011223333333322221 24679999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
++.||+||..+++|+|-|+|.+|||+++|.+++-|.|-.||+||.|...+|.++|+..|...+..|+.
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998887776654
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.5e-33 Score=341.10 Aligned_cols=330 Identities=22% Similarity=0.352 Sum_probs=270.2
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..+|+...+|-|.++|..++.|+|+++..|||.||+++|.||++-. ++.+|||.|..+|... .+..
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~D---Qv~~ 323 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQD---QVTH 323 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHH---HHHh
Confidence 4699999999999999999999999999999999999999999843 4589999999999774 4455
Q ss_pred HhhhcCceEEEEeCCCChHHHH---HHHhcC---CeEEEeCchHHHHHHHhcCCcccccCC---ceEEEeccchhhhccC
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQI---SELKRG---TEIVVCTPGRMIDILCTSGGKITNLRR---VTYLVMDEADRMFDMG 633 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~---~~l~~~---~~IvV~Tp~~L~~~l~~~~~~~~~l~~---i~~vViDEah~~~~~g 633 (1112)
+ ...+|...++.++....++. ..+..+ +.|++.||+.+...-... .....|.. +.++||||||+...||
T Consensus 324 L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 324 L-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 4 34689999999998887553 344443 699999999874321110 11234555 8999999999999998
Q ss_pred --ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecccchhHHHHHHH
Q 001261 634 --FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 634 --f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~ 707 (1112)
|.+.+..+.... .+...+|.+|||.+..+..-+...++ +|. +...++...++...|...........++..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE---LFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCCCCceEEEEeccCccchHHHHHH
Confidence 888888764433 34578999999999888766666554 454 223556666776655554444556667777
Q ss_pred HHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE
Q 001261 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI 787 (1112)
+..+.+.+.+||||.++.+|+.+...|...|+.+..||+||+..+|..+-..|..++++|+|||=++++|||.|+|..||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 77777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 788 ~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
||.+|.+++.|+|-+|||||.|....|++|+...|...+..++.
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999887655554443
No 77
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=336.74 Aligned_cols=332 Identities=23% Similarity=0.273 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
.++..+...+...++..++|.|+.++...+ .+.|+|+++|||||||+.+++.|++.+.+. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 467778888888888888888888887655 569999999999999999999999998863 568999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
||.+++.+|+ .+..+|+++...+|+..... ....+++|||+||+.+-.++.+.+. .+..+++|||||+|.+.+
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecCC
Confidence 9999999999 55678999999999986443 1224599999999999777765442 567899999999999888
Q ss_pred cCChhHHHHHHHhcC---CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc-ccCCccEEEEecccch------hH
Q 001261 632 MGFEPQITRIVQNIR---PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESD------RF 701 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~---~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~-~~~~i~q~~~~~~~~~------k~ 701 (1112)
...++.+..|+..++ ...|+|++|||+|+. ..++.++-.+++.......+. ......+.+....... ..
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 767777777766554 347999999999864 456666655554211111111 1112223333322112 22
Q ss_pred HHHHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeee
Q 001261 702 LRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLS 743 (1112)
Q Consensus 702 ~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ 743 (1112)
..++.++.. ...++++||||+++..+...+..|... ...+.+
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 333333333 335679999999999999999888731 124678
Q ss_pred ecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE----EeC-----CCCCHhHHHHHhcccCCCCC--cc
Q 001261 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----NFD-----APNHYEDYVHRVGRTGRAGR--KG 812 (1112)
Q Consensus 744 ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----~~d-----~p~s~~~y~QriGR~gR~G~--~g 812 (1112)
+|++|+..+|..+...|+.|.++|||||+.++.|+|+|.-.+|| .|+ .+.+..+|+|++|||||.|- .|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 99999999999999999999999999999999999999988887 377 45678999999999999875 46
Q ss_pred EEEEEec
Q 001261 813 CAITFIS 819 (1112)
Q Consensus 813 ~~i~~~~ 819 (1112)
.++++.+
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 6666663
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8e-33 Score=348.85 Aligned_cols=303 Identities=24% Similarity=0.292 Sum_probs=218.8
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEe
Q 001261 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575 (1112)
Q Consensus 496 ~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~ 575 (1112)
+.+..|..++.+||+|+||||||++ +|.+..-.. .+....+++.-|.|..|..+.. .++..+|..+...+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~---RvA~elg~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQ---RIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHH---HHHHHhCCCcceEE
Confidence 5556666777888999999999984 454432111 1112234445588877775544 44445667766677
Q ss_pred CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCCcEEEE
Q 001261 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 576 gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~q~il~ 654 (1112)
|+....+.. ....+.|+|+|+|+|+..+... ..|..+++||||||| ++++++|...+..-+...+++.|+|+|
T Consensus 144 GY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 144 GYKVRFHDQ--VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred eeEEcCCcc--cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 764333221 2356899999999999988653 358899999999999 799999887643333445678999999
Q ss_pred eccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc------chhHHHHHHHHHhhh--cCCeEEEEeCCHHH
Q 001261 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|||++. ..|+..|.+.|+ +.+.+...+ +...+..... .++...++..+.... ..|.+||||++..+
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 999964 567777766675 555554433 2222221111 123344444443322 35899999999999
Q ss_pred HHHHHHHHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC-----------
Q 001261 727 CDALFRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP----------- 792 (1112)
Q Consensus 727 ~~~l~~~L~~~g---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p----------- 792 (1112)
++.++..|...+ +.+..+||+|++.+|..++..+ +..+|||||+++++|||||+|.+||+++++
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998764 4588999999999999997654 347999999999999999999999999853
Q ss_pred -------CCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 793 -------NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 793 -------~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.|.+.|+||+||+||.| .|.||.||++.+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999998 9999999997653
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=328.24 Aligned_cols=337 Identities=21% Similarity=0.333 Sum_probs=261.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
....+...|.+.|+..|+++|.+|+..+.+|+++||+.+||||||.+|++||+.++...+. -++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhH
Confidence 3344577888899999999999999999999999999999999999999999999988642 3789999999999
Q ss_pred HHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCcccccCCceEEEeccchhhh
Q 001261 554 QQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
+.+.+.+.++...++ +.+....|.+...+....+...++||++||.+|..++.. .......+.++.||||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999999887 666666676666665566777899999999999774443 33444557889999999999532
Q ss_pred ccCChhHHHHHH-------HhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc-------
Q 001261 631 DMGFEPQITRIV-------QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP------- 696 (1112)
Q Consensus 631 ~~gf~~~i~~il-------~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~------- 696 (1112)
-.|+..+..++ ...+...|+|++|||+.+. ..++..+.+....+.+.....+....... ...+
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~ 285 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAE 285 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhh
Confidence 12444444333 3334578999999998654 44777777777665454444433333222 2222
Q ss_pred --cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHH----HHHHhcC----CCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 697 --ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF----RDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 697 --~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~----~~L~~~g----~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
.......+..++..... +-++|+||.+...++.+. ..+...+ ..+..++|+|...+|..+...|+.|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 11333344444443333 349999999999999987 4444445 678899999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEec
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
.++++|+.++-||||..+..||+++.|. +...|+||+||+||.++.+..+..+.
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999 89999999999999997666665554
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=3.7e-31 Score=311.19 Aligned_cols=324 Identities=23% Similarity=0.281 Sum_probs=227.3
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
....++.+|.+.+...| |+++||++|||+|||++++..|++|+...+ ..++||++||+-|+.|....+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34578999999999999 999999999999999999999999988764 36899999999999999877777654
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~~ 644 (1112)
. ..+....||.....-...+-...+|+|+||..|.+.|..... ..|+.+++|||||||+-...--...+. ..+..
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 4 455566666333222234455689999999999888865432 237889999999999864332233333 44443
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE----------------------------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV---------------------------------------------- 678 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i---------------------------------------------- 678 (1112)
-....|+|++|||+...+.....-+.+-.+.+.+
T Consensus 208 k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~ 287 (746)
T KOG0354|consen 208 KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQ 287 (746)
T ss_pred hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3444499999999864433221111000000000
Q ss_pred ---------------------cCcccccCCccEE----------------------------------------------
Q 001261 679 ---------------------GGRSVVNKDITQL---------------------------------------------- 691 (1112)
Q Consensus 679 ---------------------~~~~~~~~~i~q~---------------------------------------------- 691 (1112)
.........-.+.
T Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~ 367 (746)
T KOG0354|consen 288 EEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLE 367 (746)
T ss_pred hcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHH
Confidence 0000000000000
Q ss_pred ------------------EEec--ccchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeec
Q 001261 692 ------------------VEVR--PESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLH 745 (1112)
Q Consensus 692 ------------------~~~~--~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ih 745 (1112)
+... ....|+..|..+|...+. ..++||||.++..|..|..+|... |+....+-
T Consensus 368 ~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fi 447 (746)
T KOG0354|consen 368 LEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFI 447 (746)
T ss_pred hcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceee
Confidence 0000 012234444445544332 348999999999999999999832 33333333
Q ss_pred --------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 746 --------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 746 --------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.+|++.++..+++.|++|.++|||||+|++.||||+.|++||-||+..++..++||.|| ||+- .|.|+++
T Consensus 448 Gq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll 525 (746)
T KOG0354|consen 448 GQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLL 525 (746)
T ss_pred eccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999 9984 7899988
Q ss_pred ecCCc
Q 001261 818 ISEED 822 (1112)
Q Consensus 818 ~~~~d 822 (1112)
++...
T Consensus 526 ~t~~~ 530 (746)
T KOG0354|consen 526 TTGSE 530 (746)
T ss_pred Ecchh
Confidence 88443
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.1e-30 Score=310.31 Aligned_cols=319 Identities=17% Similarity=0.193 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHHHc-C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMS-G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..|+|+|.+++..++. | +..|+++|||+|||++.+..+... +..+|||||+..|+.||..+|.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 3688999999999884 3 478999999999999877655432 2358999999999999999999986
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC-----cccccCCceEEEeccchhhhccCChhHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-----~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
......+..++|+... .+.....|+|+|+..+......... ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 5434455555554321 1112368999999877432111000 011224688999999999753 4555
Q ss_pred HHHHhcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEEcCcccccC----CccEEEEe-------------------
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNK----DITQLVEV------------------- 694 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~--~l~~~~~~~p~~i~i~~~~~~~~----~i~q~~~~------------------- 694 (1112)
.++..+. ....|+||||+...-. ..+..+++ |..+...-...... .+...-+.
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 6666663 3457999999864321 11222222 32222211111000 00000000
Q ss_pred ----cccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccEE
Q 001261 695 ----RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLL 768 (1112)
Q Consensus 695 ----~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VL 768 (1112)
.....|+..+..++.... .+.++||||.+...+..++..| .+..|||.+++.+|..+++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 011223333333443321 4569999999999999998877 356799999999999999999865 78999
Q ss_pred EecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEE-------EEEecCCcc--CchHHHHHHH
Q 001261 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCA-------ITFISEEDA--KYSPDLVKAL 833 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~-------i~~~~~~d~--~~~~~i~~~l 833 (1112)
|+|+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |+|+++... .++..-..+|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 9999999999999999999999984 999999999999998866654 788886533 3333334444
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=304.34 Aligned_cols=363 Identities=23% Similarity=0.284 Sum_probs=260.4
Q ss_pred HCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcC--CCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ--PPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~--~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
-++|..+..+|..++|.+. ++.++|||||||||||..|+|.||+.|..+ .-....++-++++|+|+++||..++..|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 4778888999999999988 567999999999999999999999998852 1122335788999999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
.+-+..+|+.|.-++|.+.....- + ..|+|||+||+.+--.-....+....+..+.+|||||+|.+-+ ..++.+..
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHH
Confidence 998888999999999988654432 2 2499999999987322222333334567899999999997654 46777777
Q ss_pred HHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEecccc-----------hhH
Q 001261 641 IVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPES-----------DRF 701 (1112)
Q Consensus 641 il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~~-----------~k~ 701 (1112)
|+.... ....+|++|||+|+- +.++.++--+| .-+..-...+.+..+.+.+.-.... ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 765442 446799999999964 44665555443 2222222233333455555433322 111
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-----------------------CCCeeeecCCCCHHHHHHHHH
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-----------------------GYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-----------------------g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
..+++.+ ..+.+++|||.++......++.|.+. ...+.++|.||...+|..+..
T Consensus 340 ~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 340 DKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 2222333 34669999999999998888888653 134678999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCccEEEE----eCCCC------CHhHHHHHhcccCCC--CCccEEEEEecCCccCch
Q 001261 759 DFKSNVCNLLIATSVAARGLDVKELELVIN----FDAPN------HYEDYVHRVGRTGRA--GRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~p~------s~~~y~QriGR~gR~--G~~g~~i~~~~~~d~~~~ 826 (1112)
.|..|.++||+||..++.|+|+|.--++|- ||.-. .+.+.+|.+|||||. +..|.++++.+.+-..+.
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999998877773 55544 467889999999995 467888866654433333
Q ss_pred HHHHHHHhhccCCCC-hhHHHHHHHHHHHHhhh
Q 001261 827 PDLVKALELSEQVVP-DDLKALADSFMAKVNQG 858 (1112)
Q Consensus 827 ~~i~~~l~~~~~~vp-~~l~~~~~~~~~~~~~~ 858 (1112)
+..|.... +|. ..+..+++...+.+.-|
T Consensus 497 ---~sLl~~~~-piES~~~~~L~dnLnAEi~Lg 525 (1230)
T KOG0952|consen 497 ---ESLLTGQN-PIESQLLPCLIDNLNAEISLG 525 (1230)
T ss_pred ---HHHHcCCC-hhHHHHHHHHHHhhhhheeec
Confidence 33333222 232 33466777777776544
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=7.6e-29 Score=308.50 Aligned_cols=355 Identities=16% Similarity=0.184 Sum_probs=233.1
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|.|+|..++..++.. ..+|+..++|.|||+.+++.+...+.. +....+|||||+ .|+.||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 36889999998877643 478999999999999887766655443 234579999997 79999999987643
Q ss_pred hcCceEEEEeCCCChHHHH---HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--ChhHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQI---SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQITR 640 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~---~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--f~~~i~~ 640 (1112)
++.+..+.++. ..... .......+++|||++.|...-... ....-..+++|||||||++-... -...+.
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~--~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~- 296 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRL--EQALAAEWDLLVVDEAHHLVWSEEAPSREYQ- 296 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHH--HHHhhcCCCEEEEechhhhccCCCCcCHHHH-
Confidence 44443332221 11100 011123689999998775311000 00112368999999999986321 112222
Q ss_pred HHHhc-CCCCcEEEEeccccH-H------------------HHHHH-------------HHhc-CCC-------------
Q 001261 641 IVQNI-RPDRQTVLFSATFPR-Q------------------VEILA-------------RKVL-NKP------------- 673 (1112)
Q Consensus 641 il~~~-~~~~q~il~SAT~~~-~------------------~~~l~-------------~~~~-~~p------------- 673 (1112)
.+..+ .....+|++|||+-. . ...|. ..++ ..+
T Consensus 297 ~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 33333 234568999999631 0 00010 0000 000
Q ss_pred -------e-----------------------------EEEEcC-----cccccCCccEEEE-------------------
Q 001261 674 -------V-----------------------------EIQVGG-----RSVVNKDITQLVE------------------- 693 (1112)
Q Consensus 674 -------~-----------------------------~i~i~~-----~~~~~~~i~q~~~------------------- 693 (1112)
+ .+.+.. ..++. ...+.+.
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~-R~~~~~~l~~~~~y~~~~~~~~~~~~ 455 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPK-RELHPIPLPLPEQYQTAIKVSLEARA 455 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCc-CceeEeecCCCHHHHHHHHHhHHHHH
Confidence 0 000000 00000 0001110
Q ss_pred ------------------ecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCHHHHH
Q 001261 694 ------------------VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 694 ------------------~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~~~R~ 754 (1112)
+...+.|+..|+.+|... ...++||||+++..+..|...|. ..|+.+..|||+|++.+|.
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~ 534 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERD 534 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHH
Confidence 111223555666666543 35799999999999999999994 5799999999999999999
Q ss_pred HHHHHhhcC--CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 755 STISDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 755 ~~~~~F~~g--~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
.++..|+++ ...|||||+++++|+|++.+++|||||+|+++..|+||+||+||.|+.+.+.+++..........|...
T Consensus 535 ~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 535 RAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred HHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 999999974 599999999999999999999999999999999999999999999999988777765555555555554
Q ss_pred H----hhccCCCChhHHHHHHHHHHHHhhhh
Q 001261 833 L----ELSEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 833 l----~~~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
+ +...+.+|. ...+.+.|...+...+
T Consensus 615 ~~~~l~ife~~~~~-~~~v~~~~~~~l~~~l 644 (956)
T PRK04914 615 YHEGLNAFEHTCPT-GRALYDEFGDELIPYL 644 (956)
T ss_pred HhhhcCceeccCCC-HHHHHHHHHHHHHHHH
Confidence 4 344455554 6677777777776655
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=271.01 Aligned_cols=342 Identities=19% Similarity=0.319 Sum_probs=262.3
Q ss_pred cCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 471 QTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 471 ~~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+.+....+.|+ .+.+.+.+|.|..+|++.|.|.+++++.|||.||+++|.||+|-. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 4566677777776 477889999999999999999999999999999999999999843 4468999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH---hcCCeEEEeCchHHHHH---HHhcCCcccccCCceE
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL---KRGTEIVVCTPGRMIDI---LCTSGGKITNLRRVTY 620 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l---~~~~~IvV~Tp~~L~~~---l~~~~~~~~~l~~i~~ 620 (1112)
..|.....-.++. +|+....+...++..+.. ..+ .....+|+.||+.+..- +..- .+......+.+
T Consensus 144 islmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-eka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-EKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-HHHhhcceeEE
Confidence 9998765555544 577766666555544321 111 12357899999987431 1110 11234566889
Q ss_pred EEeccchhhhccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc
Q 001261 621 LVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP 696 (1112)
Q Consensus 621 vViDEah~~~~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~ 696 (1112)
|-|||+|....|| |.+.+.. |+...-++..+|+++||.++.+..-+..++.--..++. ..++..+++...+...+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCC
Confidence 9999999999888 7666553 45555577889999999988887777666543221221 12344455554443333
Q ss_pred --cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 697 --ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 697 --~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
.++-...+..+|...+.+...||||-++.+|+.++..|..+|+.+..+|..|.+.++.-+-+.|..|++.|+|||-.+
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 234556666677666666788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEeCCCCCHhHHHH-------------------------------------------HhcccCCCCCc
Q 001261 775 ARGLDVKELELVINFDAPNHYEDYVH-------------------------------------------RVGRTGRAGRK 811 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~Q-------------------------------------------riGR~gR~G~~ 811 (1112)
++|||-|+|.+||+..+|.+++.|.| -.||+||.|.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred cEEEEEecCCccCchHHH
Q 001261 812 GCAITFISEEDAKYSPDL 829 (1112)
Q Consensus 812 g~~i~~~~~~d~~~~~~i 829 (1112)
..||++|.-.|......+
T Consensus 458 a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSM 475 (695)
T ss_pred ccEEEEechHHHHhHHHH
Confidence 999999976555444333
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.2e-28 Score=303.86 Aligned_cols=309 Identities=20% Similarity=0.255 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.||+.|.+++..+..+ +++|+.|+||||||.+|+.++...+.. |.++|||+||++|+.|++..++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 6899999999999974 789999999999999999888776543 678999999999999999988875
Q ss_pred hcCceEEEEeCCCChHHHHHHH---h-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---ChhHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISEL---K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQI 638 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---f~~~i 638 (1112)
++..+..++|+.+..+....+ . ..++|||+|++.+. ..+.++++|||||+|.....+ ...+.
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 467888999998776554332 2 34799999998762 357789999999999764332 11122
Q ss_pred HH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccccc-CCccEEEEeccc------chhHHHHHHHHH
Q 001261 639 TR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPE------SDRFLRLLELLG 709 (1112)
Q Consensus 639 ~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~-~~i~q~~~~~~~------~~k~~~ll~~l~ 709 (1112)
.. ++.....+.++|++|||++......+.. +....+.+....... ......+.+... ..--..++..+.
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 22 3344457889999999987665444322 222222222221100 001111111110 001134556666
Q ss_pred hhhcCC-eEEEEeCCHH------------------------------------------------------------HHH
Q 001261 710 EWYEKG-KILIFVHSQE------------------------------------------------------------KCD 728 (1112)
Q Consensus 710 ~~~~~~-~vLIF~~s~~------------------------------------------------------------~~~ 728 (1112)
+....+ ++|||+|.+. .++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 555444 8999987521 346
Q ss_pred HHHHHHHhc--CCCeeeecCCCCH--HHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC--CC--------
Q 001261 729 ALFRDLLKH--GYPCLSLHGAKDQ--TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP--NH-------- 794 (1112)
Q Consensus 729 ~l~~~L~~~--g~~~~~ihg~~~~--~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p--~s-------- 794 (1112)
.+++.|... ++++..+|+++.+ .++..++..|.+|+.+|||+|+++++|+|+|+|++|+.+|.. -+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 777777775 7899999999974 678999999999999999999999999999999999766543 22
Q ss_pred --HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 795 --YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 795 --~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
...|+|++||+||.+..|.+++....
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 36789999999999999999976543
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=8.1e-28 Score=297.73 Aligned_cols=314 Identities=20% Similarity=0.216 Sum_probs=207.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++...|+|+|..+........-+|+.||||+|||.++++++...+.. +....++|++||+++++|++..+..++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 33458999999886554455678889999999999988877654432 224578999999999999999998766
Q ss_pred hhc--CceEEEEeCCCChHHHH--------------------HHHhc-------CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 565 KVM--GVRCVPVYGGSGVAQQI--------------------SELKR-------GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 565 ~~~--~i~~~~~~gg~~~~~~~--------------------~~l~~-------~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..+ ...+.+++|........ ..+.. -..|+|||...++..+..... ..+
T Consensus 356 ~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~l 433 (878)
T PRK09694 356 SKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFI 433 (878)
T ss_pred HHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHH
Confidence 533 34567777765422111 01111 158999999988755443211 122
Q ss_pred CCc----eEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHH-HHHhcCC---------CeEEEEcC
Q 001261 616 RRV----TYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEIL-ARKVLNK---------PVEIQVGG 680 (1112)
Q Consensus 616 ~~i----~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l-~~~~~~~---------p~~i~i~~ 680 (1112)
..+ ++|||||+|.+ +.-....+..++..+ .....+|+||||+|..+... ...+... |.......
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 222 48999999975 222233444444443 34567999999999887543 3332111 11000000
Q ss_pred c---ccccC------CccEEEEec----ccchhHHHHHHHHHhh-hcCCeEEEEeCCHHHHHHHHHHHHhcC---CCeee
Q 001261 681 R---SVVNK------DITQLVEVR----PESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKHG---YPCLS 743 (1112)
Q Consensus 681 ~---~~~~~------~i~q~~~~~----~~~~k~~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~g---~~~~~ 743 (1112)
. .+... .....+.+. ........++..|... ..++++||||||+..|..++..|...+ +.+..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 0 00000 011111111 1111112334444332 346789999999999999999999764 67999
Q ss_pred ecCCCCHHHH----HHHHHHh-hcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 744 LHGAKDQTDR----ESTISDF-KSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 744 ihg~~~~~~R----~~~~~~F-~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
+||.+...+| ..+++.| ++|. ..|||||+++++|||| ++++||...+| .+.|+||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4678888 6776 4799999999999999 58999998888 6799999999999875
No 87
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-29 Score=284.12 Aligned_cols=309 Identities=20% Similarity=0.235 Sum_probs=246.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+++-.+.|.+|...+-+||.|+||||||++.-..+...=. ...|.++-+.-|.|..|+. +..+++..+|++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy------tk~gk~IgcTQPRRVAAmS---VAaRVA~EMgvk 337 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY------TKGGKKIGCTQPRRVAAMS---VAARVAEEMGVK 337 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc------ccCCceEeecCcchHHHHH---HHHHHHHHhCcc
Confidence 3667788888899999999999999999863333332211 1123445555699998885 455667788988
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCC
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~ 649 (1112)
...-+|++..++++.. ..+.|.++|.|+|+.-+... .+|.++++||||||| |-+..+....+..-+..++|+.
T Consensus 338 LG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred cccccceEEEeccccC--cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 8888898888888765 45889999999999887654 589999999999999 8888888888888888889999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~ 726 (1112)
.+|+.|||+ +.+.|...|-.-|++...+.+- .+..++...++.+.+...+..+.++. +.|.||||...++.
T Consensus 412 KllIsSAT~--DAekFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATM--DAEKFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeecccc--CHHHHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999999 5677877777778866554432 23344555666677777666665543 45899999999999
Q ss_pred HHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------
Q 001261 727 CDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------ 791 (1112)
Q Consensus 727 ~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------ 791 (1112)
++.+...|... .+-+++||+.+|.+.+..|++--..|-.+|++||++|+.+|.|++|.+||+-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 98888777653 355889999999999999999999999999999999999999999999998554
Q ss_pred ------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 792 ------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 792 ------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
|.|-+...||.||+||+| +|.||.||+.+
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 556788899999999998 99999999854
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=289.27 Aligned_cols=321 Identities=20% Similarity=0.241 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+--++..| -|+.++||+|||++|++|++..+.. |..|+||+||++||.|.+.++..++
T Consensus 79 lg-~~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LG-LRHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cC-CCcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44 35677777666555555 4889999999999999999977653 4568999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCCccccc-----CCceEEEeccchhhh-cc-----
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGKITNL-----RRVTYLVMDEADRMF-DM----- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~~~~~l-----~~i~~vViDEah~~~-~~----- 632 (1112)
..+|+.+.+++||.+...+...+ .++|+||||++| .++|..+. ..++ ..+.++||||||.|+ |.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 99999999999999887775554 489999999999 88886541 1223 588999999999874 20
Q ss_pred ----------CChhHHHHHHHhcCCC--------------CcEEEEecc-------------------------------
Q 001261 633 ----------GFEPQITRIVQNIRPD--------------RQTVLFSAT------------------------------- 657 (1112)
Q Consensus 633 ----------gf~~~i~~il~~~~~~--------------~q~il~SAT------------------------------- 657 (1112)
.+...+..++..+... ...|.||-.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 0112222233333221 122322222
Q ss_pred --------------------------------------------------------------------------------
Q 001261 658 -------------------------------------------------------------------------------- 657 (1112)
Q Consensus 658 -------------------------------------------------------------------------------- 657 (1112)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -----ccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHH
Q 001261 658 -----FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALF 731 (1112)
Q Consensus 658 -----~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~ 731 (1112)
.......| ..+++-++.+.....+...... ...++.....|+..++..+...... .++||||+|+..++.|+
T Consensus 384 GMTGTa~te~~Ef-~~iY~l~Vv~IPtnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEF-QQIYNLEVVVIPTNRSMIRKDE-ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHH-HHHhCCCEEECCCCCCcceecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 11100000 1111111111111111110001 1122344557888888887766544 59999999999999999
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC------------------------------
Q 001261 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK------------------------------ 781 (1112)
Q Consensus 732 ~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~------------------------------ 781 (1112)
..|...|+++..||+.+.+.++..+...|+.|. |+|||++|+||+||.
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999994 999999999999996
Q ss_pred --------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 782 --------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 --------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2235666667777777789999999999999999999876653
No 89
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.3e-29 Score=285.55 Aligned_cols=309 Identities=21% Similarity=0.268 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
.+-.+.+..+-.++-+|++|+||||||++.-..+++.-.. ..|. +.+.-|.|..|. ...++++..++...
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~------~~g~-I~~TQPRRVAav---slA~RVAeE~~~~l 123 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA------SSGK-IACTQPRRVAAV---SLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc------cCCc-EEeecCchHHHH---HHHHHHHHHhCCCc
Confidence 3445777788889999999999999999755444433221 1233 556669998887 45566666777777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCCc
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~q 650 (1112)
...+|++..++.... ..+.|.++|.|.|+..+... ..|+.+++||||||| |-+..+....+.+-+...+++..
T Consensus 124 G~~VGY~IRFed~ts--~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDSTS--KDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CceeeeEEEecccCC--CceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 777777766665433 35899999999999887654 579999999999999 77777766666666666778899
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHH---HhhhcCCeEEEEeCCHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL---GEWYEKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l---~~~~~~~~vLIF~~s~~~~ 727 (1112)
+|+||||+ +...|...|.+-|+ +.+.++.++ +...+...+..+.+...+..+ +...+.|.+|||.++++++
T Consensus 198 lIimSATl--da~kfS~yF~~a~i-~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATL--DAEKFSEYFNNAPI-LTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeee--cHHHHHHHhcCCce-EeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999 45666666666565 566666554 333333344444444433333 2234678999999999999
Q ss_pred HHHHHHHHhc----C--C--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC--------
Q 001261 728 DALFRDLLKH----G--Y--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-------- 791 (1112)
Q Consensus 728 ~~l~~~L~~~----g--~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-------- 791 (1112)
+.++..|.+. + . -++++||.|+.+++..++..-..|..+|+|||++++..|.|+++.+||+-++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999875 1 1 2578999999999999999999999999999999999999999999997444
Q ss_pred ----------CCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 792 ----------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 ----------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|.|.+...||.||+||+| +|.||.+|++++.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 668899999999999998 9999999998664
No 90
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=288.28 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=143.0
Q ss_pred hHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHcCCC
Q 001261 436 KEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR-----KLNYEKP---MPIQAQALPVIMSGRD 506 (1112)
Q Consensus 436 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~-----~~~~~~p---t~iQ~~ai~~il~g~d 506 (1112)
+.+..++.+++...-..+...+ .|... .. .-...|++...+...+. ..||..| ||+|.|+||.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~l-d~-~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESL-DK-LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCch-HH-HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 3466777777654333333222 12111 00 01356888888888776 6899999 9999999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+|+.++||+|||++|++|++..+.. +..++||+||++||.|+++++..++..+|+++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 9999999999999999999988764 22489999999999999999999999999999999999999988766
Q ss_pred HhcCCeEEEeCchHH-HHHHHhcCCccc----ccCCceEEEeccchhhh
Q 001261 587 LKRGTEIVVCTPGRM-IDILCTSGGKIT----NLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L-~~~l~~~~~~~~----~l~~i~~vViDEah~~~ 630 (1112)
+ +++||||||++| .++|..+..... -...+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5 499999999999 999876431111 12356899999999875
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=7.5e-28 Score=256.38 Aligned_cols=202 Identities=51% Similarity=0.867 Sum_probs=185.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 469 ~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|+++++++.+.+.|..+|+..|+++|.++++.++.|+++|++++||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 78899999999999999999999999999999999999999999999999999999999987642 135789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|++|+.|+...+..+....++.+.+++|+.........+..+++|+||||+.|..++.... ..+.++.+|||||+|.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADR 154 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHH
Confidence 9999999999999998888999999999998887777777789999999999999887643 5678899999999999
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i 676 (1112)
+.+.+|...+..++..++...|+++||||+++.+..++..++.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999999999865
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.6e-27 Score=282.58 Aligned_cols=323 Identities=21% Similarity=0.260 Sum_probs=230.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-++..|+ |....||+|||+++.+|++..... |..|-||+||--||.|.+..+..++
T Consensus 77 ~g-~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LG-LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hC-CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 55 368899988877776776 889999999999999999987664 7788999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+++.++.|+.+..+..... .|+|++||..-|. ++|..+- ........+.|.||||+|.|+ |..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 99999999999887666554443 4899999998763 3333221 011123567899999999763 210
Q ss_pred ---------ChhHHHHHHHhcCCC-------------------C------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------R------------------------------------ 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------~------------------------------------ 649 (1112)
+...+..++..+... .
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 111122222221110 0
Q ss_pred -------------------------------------------------------------------------cEEEEec
Q 001261 650 -------------------------------------------------------------------------QTVLFSA 656 (1112)
Q Consensus 650 -------------------------------------------------------------------------q~il~SA 656 (1112)
++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 1222333
Q ss_pred cccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHH
Q 001261 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLL 735 (1112)
Q Consensus 657 T~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~ 735 (1112)
|.......| ...++-++...+...+....... ...+.....|+..++..+.... .+.++||||+|+..++.|+..|.
T Consensus 384 Ta~~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 384 TAKTEEEEF-REIYNMEVITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred CCHHHHHHH-HHHhCCCEEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 322211111 22222222221111111111111 1223344568888888886544 34699999999999999999999
Q ss_pred hcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---Ccc-----EEEEeCCCCCHhHHHHHhcccCC
Q 001261 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 736 ~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
+.|+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||++++|.+...|.|++|||||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 99999999999999888887777777776 999999999999995 899 99999999999999999999999
Q ss_pred CCCccEEEEEecCCccC
Q 001261 808 AGRKGCAITFISEEDAK 824 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d~~ 824 (1112)
.|.+|.+++|++.+|.-
T Consensus 540 qG~~G~s~~~~sleD~l 556 (796)
T PRK12906 540 QGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CCCCcceEEEEeccchH
Confidence 99999999999877653
No 93
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.4e-28 Score=295.10 Aligned_cols=308 Identities=23% Similarity=0.248 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
....+.+.++...+-+||+|+||||||++.-..++.... +.+..+.++-|.|.-|. +...+++..++..+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAAr---svA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAAR---SVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHH---HHHHHHHHHhCCCc
Confidence 445566677778888999999999999976655555432 22334555569886666 44556666677777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHH-HHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRI-VQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~i-l~~~~~~~ 649 (1112)
...+|+...++... ...+.|.|+|.|.|+..+... ..|+.|++||||||| |.++.+|.-.+..- +..++++.
T Consensus 123 G~~VGY~iRfe~~~--s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 123 GETVGYSIRFESKV--SPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred CceeeEEEEeeccC--CCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 77777776665532 356899999999999998765 468999999999999 88888877665554 66677789
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc-cch-hHHHHHHHHHhh--hcCCeEEEEeCCHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESD-RFLRLLELLGEW--YEKGKILIFVHSQE 725 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~-~~~-k~~~ll~~l~~~--~~~~~vLIF~~s~~ 725 (1112)
.+|+||||+ +.+.|...|.+-|+ +.+.++.++.. ..+.... .+. -...+...+... ...|.+|||.+.+.
T Consensus 197 KiIimSATl--d~~rfs~~f~~apv-i~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATL--DAERFSAYFGNAPV-IEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEeccc--CHHHHHHHcCCCCE-EEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999999 45567666666665 56666655432 2221111 222 122222333222 24689999999999
Q ss_pred HHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC----------
Q 001261 726 KCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------- 791 (1112)
Q Consensus 726 ~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~---------- 791 (1112)
+++.++..|.+ ..+.++++||.|+..++.++|+--..|..+|++||+|++++|.|++|.+||+-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999998 3478999999999999999999888898889999999999999999999998444
Q ss_pred --------CCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 792 --------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 792 --------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.|.++..||.|||||.+ +|.||-+|++.+
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 557889999999999998 999999999743
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=282.82 Aligned_cols=361 Identities=24% Similarity=0.316 Sum_probs=263.2
Q ss_pred CCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC---CCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD---GPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~---~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+|+..+.++|....++.+.+ .++++|||||+|||..+++.||+.+........+. ..++++++|..+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 45666889999999998876 58999999999999999999999987764432222 347899999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~-~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
.+.+..+|+.|.-++|...... ++ .+++||||||+.. |.+....+.....+-+.++||||.|.+-| ..++.+.
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLE 458 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLE 458 (1674)
T ss_pred HhhccccCcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHH
Confidence 9999999999999999875432 22 3589999999986 56666655555566788999999997654 4677777
Q ss_pred HHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc---chhHHH----HH
Q 001261 640 RIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---SDRFLR----LL 705 (1112)
Q Consensus 640 ~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~---~~k~~~----ll 705 (1112)
.|+.... ....++++|||+|+-. ..+.++..++--+...+.+..+.++.|.++-... ..++.. .+
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 7765442 3567999999999754 3444444455334444445555556665543332 223322 23
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCC
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAK 748 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ihg~~ 748 (1112)
+.+......+++|||+.++++.-..+..++.. .+.++++|.||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 33444445689999999998887777776521 46788999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCCc--cEEEE
Q 001261 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRK--GCAIT 816 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~~--g~~i~ 816 (1112)
+..+|..+...|.+|.++|||+|-.+++|+|+|.-+++|- ||+ +.++.+.+||+||+||.+-. |..++
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999999999999999999999999888883 666 44799999999999997643 44444
Q ss_pred EecCCccCchHHHHHHHhhccCCCC--h-hHHHHHHHHHHHHhhh
Q 001261 817 FISEEDAKYSPDLVKALELSEQVVP--D-DLKALADSFMAKVNQG 858 (1112)
Q Consensus 817 ~~~~~d~~~~~~i~~~l~~~~~~vp--~-~l~~~~~~~~~~~~~~ 858 (1112)
.-...+..+ .+..-++++| . .+..+++...+.+..|
T Consensus 698 it~~se~qy------yls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 698 ITDHSELQY------YLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred ccCchHhhh------hHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 333333333 2333344444 2 2345667777666655
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=9.3e-27 Score=281.79 Aligned_cols=323 Identities=23% Similarity=0.266 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-++..|+ |+.+.||+|||++|++|++...+. |..|-||+||..||.|.+.++..++
T Consensus 78 lg-~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LG-MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hC-CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 45 368888888877776664 899999999999999999744332 3457799999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCCc---ccccCCceEEEeccchhhh-cc-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGK---ITNLRRVTYLVMDEADRMF-DM------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~~---~~~l~~i~~vViDEah~~~-~~------- 632 (1112)
..+|+++.+++|+.+..++...+. ++|+|+||+.| .++|..+... ...+..+.++||||||.|+ |.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 999999999999998887766653 89999999999 8888654211 1236788999999999874 10
Q ss_pred --------CChhHHHHHHHhcCCC--------C-----------------------------------------------
Q 001261 633 --------GFEPQITRIVQNIRPD--------R----------------------------------------------- 649 (1112)
Q Consensus 633 --------gf~~~i~~il~~~~~~--------~----------------------------------------------- 649 (1112)
.+...+..++..+..+ .
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0112222233222111 1
Q ss_pred --------------------------------------------------------------cEEEEeccccHHHHHHHH
Q 001261 650 --------------------------------------------------------------QTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 650 --------------------------------------------------------------q~il~SAT~~~~~~~l~~ 667 (1112)
.+.+||+|.......| .
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 383 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF-R 383 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH-H
Confidence 1334444443222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++...+...+........ ..+.....|+..++..+..... +.++||||+|+..++.|+..|...|+++..|||
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d-~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPD-LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 22232322222222211111111 2234556788888888876443 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc--------------------------------------cEEEE
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL--------------------------------------ELVIN 788 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v--------------------------------------~~VI~ 788 (1112)
. +.+|+..+..|..+...|+|||++|+||+||+=- -+||-
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 8899999999999999999999999999998642 36777
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
-..|.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 777888888899999999999999999999876643
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.2e-26 Score=276.50 Aligned_cols=288 Identities=18% Similarity=0.241 Sum_probs=197.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH-
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE- 586 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~- 586 (1112)
|+.|+||||||.+|+..+...+.. |.++|||+|+++|+.|++..++.. ++..+..++++.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 578999999999997766554432 668999999999999999988875 46678888888876654333
Q ss_pred --Hhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---ChhHHH--HHHHhcCCCCcEEEEeccc
Q 001261 587 --LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQIT--RIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 587 --l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---f~~~i~--~il~~~~~~~q~il~SAT~ 658 (1112)
+.. .++|||+|+..|. ..+.++++|||||+|.....+ ...+.. .++.....+.++|++|||+
T Consensus 70 ~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATP 139 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATP 139 (505)
T ss_pred HHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCC
Confidence 333 4799999998652 357789999999999765332 111221 2333444678999999997
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCcccccC-CccEEEEecccc--h-hHHHHHHHHHhhhcC-CeEEEEeCCHHH-------
Q 001261 659 PRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLVEVRPES--D-RFLRLLELLGEWYEK-GKILIFVHSQEK------- 726 (1112)
Q Consensus 659 ~~~~~~l~~~~~~~p~~i~i~~~~~~~~-~i~q~~~~~~~~--~-k~~~ll~~l~~~~~~-~~vLIF~~s~~~------- 726 (1112)
+......+. .+....+.+........ .....+.+.... . --..|+..|.+.... +++|||+|++..
T Consensus 140 sles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 655433332 12222222221111000 111111111111 1 113456666555544 589999776543
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCCeeeecCCCCHH
Q 001261 727 -----------------------------------------------------CDALFRDLLKH--GYPCLSLHGAKDQT 751 (1112)
Q Consensus 727 -----------------------------------------------------~~~l~~~L~~~--g~~~~~ihg~~~~~ 751 (1112)
.+.+...|.+. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 46777888775 78899999999876
Q ss_pred HH--HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------CC------CHhHHHHHhcccCCCCCccEEEEE
Q 001261 752 DR--ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------PN------HYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 752 ~R--~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------p~------s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.+ ..++..|.+|+.+|||+|+++++|+|+|+|++|+.+|. |. ....|+|++||+||.+..|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 88999999999999999999999999999999865444 32 246789999999999999998865
Q ss_pred e
Q 001261 818 I 818 (1112)
Q Consensus 818 ~ 818 (1112)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=1.6e-26 Score=272.37 Aligned_cols=292 Identities=20% Similarity=0.292 Sum_probs=202.5
Q ss_pred CCChHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+++|.+|+..+.. ++..+++.|||+|||++++..+... +..+||||||.+|+.||++.+..+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999998 8999999999999999877666543 223999999999999998777665
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+... ..+..+||.... +.. ..|+|+|...+..... ........+++|||||||++.... ...+..
T Consensus 104 ~~~~--~~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~---l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~ 168 (442)
T COG1061 104 LLLN--DEIGIYGGGEKE-----LEP-AKVTVATVQTLARRQL---LDEFLGNEFGLIIFDEVHHLPAPS----YRRILE 168 (442)
T ss_pred cCCc--cccceecCceec-----cCC-CcEEEEEhHHHhhhhh---hhhhcccccCEEEEEccccCCcHH----HHHHHH
Confidence 4321 123334443221 111 4699999998866410 011233479999999999976433 344444
Q ss_pred hcCCCCcEEEEeccccHHHHH---HHHHhcCCCeEEEEcCcccccCC----ccEE-EEe-c-------------------
Q 001261 644 NIRPDRQTVLFSATFPRQVEI---LARKVLNKPVEIQVGGRSVVNKD----ITQL-VEV-R------------------- 695 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~---l~~~~~~~p~~i~i~~~~~~~~~----i~q~-~~~-~------------------- 695 (1112)
.+.....+|+||||++..... ....+++ |+.+.+.-....... .... +.+ .
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 443333389999998743211 1111111 333332211111100 0000 000 0
Q ss_pred -----------------ccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 696 -----------------PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 696 -----------------~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
....+...+..++.......++||||.+..++..++..|...++ +..++|..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 00111122222222211245999999999999999999998888 899999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCC
Q 001261 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
.|+.|.+++||++.++..|+|+|+++++|...+..|...|+||+||+-|
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4e-25 Score=266.47 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=226.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+--++..| -|+.++||.|||++|++|++.+.+. |..|.||+|+..||.|..+++..++
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 443 5777777665555444 5889999999999999999977654 4559999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCC-c--ccccCCceEEEeccchhhhc-cC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG-K--ITNLRRVTYLVMDEADRMFD-MG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~-~--~~~l~~i~~vViDEah~~~~-~g------ 633 (1112)
..+|+++.+++++.+....... -+++|+||||+.| .++|..+-. . ..-...+.++||||||.|+- ..
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 9999999999999886443222 2589999999999 888865411 0 11236788999999997652 10
Q ss_pred ---------ChhHHHHHHHhcCC-------------------CCcEEEEe------------------------------
Q 001261 634 ---------FEPQITRIVQNIRP-------------------DRQTVLFS------------------------------ 655 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~-------------------~~q~il~S------------------------------ 655 (1112)
+...+..++..+.. ..+.|.||
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 11111112221110 11122222
Q ss_pred --------------------------------------------------------------------------------
Q 001261 656 -------------------------------------------------------------------------------- 655 (1112)
Q Consensus 656 -------------------------------------------------------------------------------- 655 (1112)
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence
Q ss_pred ------ccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHH
Q 001261 656 ------ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCD 728 (1112)
Q Consensus 656 ------AT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~ 728 (1112)
+|.......| ..+++-++.+.+...+........ .++.....|+..++..+......| ++||||+|+..++
T Consensus 386 kL~GMTGTa~te~~Ef-~~iY~l~Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEF-QHIYGLDTVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHH-HHHhCCCEEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 1111111111 111111111111111111111111 123344678888888887765544 8999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---------------------------
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK--------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~--------------------------- 781 (1112)
.|+..|...|+++..+|+.+++.++..+...|+.|. |+|||++|+||+||.
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999997
Q ss_pred ----------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 782 ----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 782 ----------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
+=-+||--..+.|---=.|-.||+||-|.+|.+..|++-+|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 234677777788877778999999999999999999987665
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=1.7e-24 Score=270.54 Aligned_cols=327 Identities=22% Similarity=0.290 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.|+|.+++.+++ .|..+|++.++|.|||++.+..+ .++.... +....+|||||. .|..||..+|.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 67899999999986 57889999999999999765444 3333211 122347999996 56689999999997
Q ss_pred hhcCceEEEEeCCCChHHHHH-H-H-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQIS-E-L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~-~-l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
.. +.++.++|.......+. . + ....+|||+|++.+...... +.--.+.+|||||||++-+. ...+..+
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 53 45555555433222211 1 1 23578999999988654321 12235789999999998753 3345555
Q ss_pred HHhcCCCCcEEEEeccccH----HHHHHHHHhc-----------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFPR----QVEILARKVL----------------------------------------------- 670 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~----~~~~l~~~~~----------------------------------------------- 670 (1112)
+..+.. ...+++|+|+-. .+..++..++
T Consensus 314 lr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 666643 346889999631 1111111100
Q ss_pred --CCCeE--EEEcCcc--------c-------ccC--------C-ccE---E-------------------EEecccchh
Q 001261 671 --NKPVE--IQVGGRS--------V-------VNK--------D-ITQ---L-------------------VEVRPESDR 700 (1112)
Q Consensus 671 --~~p~~--i~i~~~~--------~-------~~~--------~-i~q---~-------------------~~~~~~~~k 700 (1112)
..... +.+.-.. . ... + +.+ . ..+...+.|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 00000 1110000 0 000 0 000 0 000112345
Q ss_pred HHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEecCcccc
Q 001261 701 FLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIATSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVaT~v~~~ 776 (1112)
+..|..+|..... +.+|||||.....++.|..+|...|+.++.|||+++..+|..++..|.+. .+.+||+|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 6666666655443 45999999999999999999999999999999999999999999999753 3467999999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEE--EEecCC--ccCchHHHHH
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI--TFISEE--DAKYSPDLVK 831 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i--~~~~~~--d~~~~~~i~~ 831 (1112)
|||+..+++||+||+||++..+.|++||+.|.|+...|+ .|++.. +...+....+
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 455543 3334443333
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.2e-24 Score=277.12 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHHHH----c-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----S-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|+++|..||..+. . .+.+|++++||||||.+++..+.. +... +...++|||||+.+|+.|+...|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 367999999999999875544443 3322 2346899999999999999999988
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--CcccccCCceEEEeccchhhhc---------
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFD--------- 631 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~i~~vViDEah~~~~--------- 631 (1112)
+....+..+..+++....... .......|+|+|+..|...+.... .....+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 632222112122221111111 112347899999999877653321 1123567889999999998531
Q ss_pred cC------ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC----ccccc-----CCccE------
Q 001261 632 MG------FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG----RSVVN-----KDITQ------ 690 (1112)
Q Consensus 632 ~g------f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~----~~~~~-----~~i~q------ 690 (1112)
.+ +...+..++.++. ...|+||||+..... .+++.|+...--. .+... ..+..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 11 2356777777653 468999999864322 2223333211000 00000 00000
Q ss_pred -----------------EE--Eecccc-----h----------hHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHH
Q 001261 691 -----------------LV--EVRPES-----D----------RFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 691 -----------------~~--~~~~~~-----~----------k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
.+ ...+.. . ....++..|.... ..+++||||.++.+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 00 000000 0 0011122222222 237999999999999999988
Q ss_pred HHhc------CC---CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhc
Q 001261 734 LLKH------GY---PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803 (1112)
Q Consensus 734 L~~~------g~---~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriG 803 (1112)
|... ++ .|..+||+++ ++..++..|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7653 22 4667999886 46789999999886 69999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 001261 804 RTGRAG 809 (1112)
Q Consensus 804 R~gR~G 809 (1112)
|+.|..
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999963
No 101
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.2e-25 Score=253.51 Aligned_cols=306 Identities=21% Similarity=0.258 Sum_probs=204.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE-
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP- 573 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~- 573 (1112)
++.+.+|..+--|||||+||||||++.-..++..=..+... .++..+-|.-|.|..|..+...+..-+..++-.|..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 45556666777789999999999986544444432222211 122355566799999887765544332223333332
Q ss_pred -EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHH-HHH---HhcCC
Q 001261 574 -VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQIT-RIV---QNIRP 647 (1112)
Q Consensus 574 -~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~-~il---~~~~~ 647 (1112)
-|.|+ +...+.|.++|.|.|+..+.+. +.|..|+.||||||| |..+.+..-.+. +|+ ..+..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 23333 2345899999999999988764 678999999999999 655544333222 222 11111
Q ss_pred ------CCcEEEEeccccHHHHHHH--HHhcC-CCeEEEEcCcccccCCccEEEEecccchhHH----HHHHHHHhhhcC
Q 001261 648 ------DRQTVLFSATFPRQVEILA--RKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFL----RLLELLGEWYEK 714 (1112)
Q Consensus 648 ------~~q~il~SAT~~~~~~~l~--~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~----~ll~~l~~~~~~ 714 (1112)
...+|+||||+ .+..|. +.++. -|-.|.+..+.++ +.-+|.-....+.+. ..+. |++.++.
T Consensus 408 e~~~~kpLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~-IH~kLP~ 481 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCK-IHKKLPP 481 (1172)
T ss_pred hhcccCceeEEEEeeeE--EecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHH-HhhcCCC
Confidence 34689999997 333333 12222 2224555544443 333343333333332 3333 3344578
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc---------------------------------------------------------
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH--------------------------------------------------------- 737 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~--------------------------------------------------------- 737 (1112)
|.||||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999653
Q ss_pred ------------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 738 ------------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 738 ------------------------------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+-|+++++=++...+.+++..-..|..-|+|||+||+
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 12367788888999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCC--------CC----------CHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 776 RGLDVKELELVINFDA--------PN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~--------p~----------s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+.|.||+|.+||+.+. -. |.+..-||+|||||+| .|.||.||+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999997443 22 3455569999999998 99999999753
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-23 Score=220.17 Aligned_cols=299 Identities=19% Similarity=0.209 Sum_probs=208.6
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++||.|..+-..++ +..+.|+.|-||+|||.. +.+.+..+..+ |..+.|..|....|..++..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78899987766554 668999999999999975 44455554443 7788999999999999999888865
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
. ++.+.++||++...- . ..+||+|...|+.+- +.+++|||||+|.+--..-......+-..
T Consensus 169 ~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk----------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFK----------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred c--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHH----------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 4 467788999885432 2 678999988887664 24789999999975422222222233445
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhH------HHHHHHHHhhhcC-Ce
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRF------LRLLELLGEWYEK-GK 716 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~------~~ll~~l~~~~~~-~~ 716 (1112)
.....-+|++|||++..++.-+...-. ..+.+..+.-..+-....+.+...- .++ ..|+.+|...... .+
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 556677999999999876544332221 2223322221111122222232222 222 2566677665543 48
Q ss_pred EEEEeCCHHHHHHHHHHHHh-cC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC--
Q 001261 717 ILIFVHSQEKCDALFRDLLK-HG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-- 792 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~-~g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p-- 792 (1112)
+|||++++..++.++..|.. .+ ..+..+|+.. ..|.+..+.|++|.++|||+|.+++||+.+|+|+++|.-.--
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999954 33 3457788754 478889999999999999999999999999999998753222
Q ss_pred CCHhHHHHHhcccCCCC--CccEEEEEe
Q 001261 793 NHYEDYVHRVGRTGRAG--RKGCAITFI 818 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G--~~g~~i~~~ 818 (1112)
.+-+..+|..||+||.- ..|.++.|.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 36788999999999952 356666443
No 103
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=7.7e-24 Score=247.82 Aligned_cols=320 Identities=19% Similarity=0.251 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+| .|-++|++||-++..|..|+|.|+|.+|||+++-.++.... .++.++++..|-.+|-+|-+..|+.-+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhc
Confidence 444 57899999999999999999999999999998766654331 246789999999999999999988866
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
...| +++|.. ++...+.++|||.+.|..+|.++.+ .++++.+||+||+|.+-|...+..+..++-.
T Consensus 365 ~Dvg----LlTGDv-------qinPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 365 GDVG----LLTGDV-------QINPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred cccc----eeecce-------eeCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeeee
Confidence 6544 567766 3456689999999999999988653 4677999999999999998888889999999
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcC---CCeEEEEc-CcccccCCccEEEEe--------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLN---KPVEIQVG-GRSVVNKDITQLVEV-------------------------- 694 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~---~p~~i~i~-~~~~~~~~i~q~~~~-------------------------- 694 (1112)
+++..++|++|||.|+..+ |+.++.. ..+.++-. .++++ +.+++..
T Consensus 431 lP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVP---LEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 431 LPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVP---LEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred ccccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccc---eEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 9999999999999998765 5555432 22222211 11110 0000000
Q ss_pred -------------------------------c------ccchhH--HHHHHHHHhhhcC--CeEEEEeCCHHHHHHHHHH
Q 001261 695 -------------------------------R------PESDRF--LRLLELLGEWYEK--GKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 695 -------------------------------~------~~~~k~--~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~ 733 (1112)
. ....+. ...+.+|...... -++||||-++..|+..+.+
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0 000011 1233333332222 3899999999999999999
Q ss_pred HHhc---------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 734 LLKH---------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 734 L~~~---------------------------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
|... .-.++++|||+-+--++-+.-.|..|-++||+||..+
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8643 1246789999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEeCCC---------CCHhHHHHHhcccCCCCC--ccEEEEEecCCccCchHHHHHHH
Q 001261 775 ARGLDVKELELVINFDAP---------NHYEDYVHRVGRTGRAGR--KGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p---------~s~~~y~QriGR~gR~G~--~g~~i~~~~~~d~~~~~~i~~~l 833 (1112)
++|||.|.-.+|+. .+- -.+-.|.|++|||||-|- .|++|++.... ..-...+.+.+
T Consensus 667 AMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li 734 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLI 734 (1248)
T ss_pred hhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHh
Confidence 99999998777774 221 247899999999999875 57777666543 44555555554
No 104
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.5e-24 Score=246.12 Aligned_cols=308 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+-|+|.+||..|-.+..||+.|.|.+|||.++-.++...+.. ..+|++..|-.+|.+|-|.++..-++..|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4679999999999999999999999999999988888777654 56799999999999999999988666554
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+.+|... +...+..+|+|.+.|..+|.+++ --++.+.+||+||+|.|-|...+..+..-+-.++.+
T Consensus 201 ----LMTGDVT-------InP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 ----LMTGDVT-------INPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ----eeeccee-------eCCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 4555553 33557899999999999998765 357889999999999999988777888888888999
Q ss_pred CcEEEEeccccHHHHHHHHHh---cCCCeEEEEcCcccccCCccEE---------EEeccc-----chhHHHHHHHHHh-
Q 001261 649 RQTVLFSATFPRQVEILARKV---LNKPVEIQVGGRSVVNKDITQL---------VEVRPE-----SDRFLRLLELLGE- 710 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~---~~~p~~i~i~~~~~~~~~i~q~---------~~~~~~-----~~k~~~ll~~l~~- 710 (1112)
...|++|||+|+..+ |+.++ -..|+.+..... .+.++.++ +.+.+. .+.|...+..|..
T Consensus 267 vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999998654 55544 456755443221 11122222 112221 1233333332221
Q ss_pred ----------------------------------hh--cCCeEEEEeCCHHHHHHHHHHHHhcC----------------
Q 001261 711 ----------------------------------WY--EKGKILIFVHSQEKCDALFRDLLKHG---------------- 738 (1112)
Q Consensus 711 ----------------------------------~~--~~~~vLIF~~s~~~~~~l~~~L~~~g---------------- 738 (1112)
.. ...++|||+-++++|+.++-.+.+..
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 11 12489999999999999988876541
Q ss_pred -----------------------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC
Q 001261 739 -----------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA 791 (1112)
Q Consensus 739 -----------------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~ 791 (1112)
-.+.++|||+-+-.++-+.-.|..|-++||+||..++.|||.|.-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 14678999999999999999999999999999999999999998877764 222
Q ss_pred C----CCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 792 P----NHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 792 p----~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
- .+.-.|+|+.|||||-|. .|.||+++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 256789999999999885 58999998754
No 105
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.3e-23 Score=255.00 Aligned_cols=315 Identities=19% Similarity=0.258 Sum_probs=232.7
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++| .|-++|++++-.|..|..|+++||||||||++...++...+.. |.++++.+|.++|.+|.|..+..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 34555 5789999999999999999999999999999988888776554 55699999999999999999887
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
.+....--+.+++|... +..++.|+|+|.+.|..++...+ ..+..+.+||+||+|.|.|..-+..+..++
T Consensus 185 ~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 185 KFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred Hhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHH
Confidence 65543112344556553 34568999999999999998764 567889999999999999999999999999
Q ss_pred HhcCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEEcCcccccCCccEEE-------Eecccchh------------
Q 001261 643 QNIRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVGGRSVVNKDITQLV-------EVRPESDR------------ 700 (1112)
Q Consensus 643 ~~~~~~~q~il~SAT~~~~~~~l~~~~~---~~p~~i~i~~~~~~~~~i~q~~-------~~~~~~~k------------ 700 (1112)
-.++...++|+||||+|+..+ |..++. ..|+.+.....- +.++.+++ .+.+...+
T Consensus 255 i~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~R--pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEHR--PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecCC--CCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 999999999999999987643 444433 445443332211 11111111 11111111
Q ss_pred -----------------------------------HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--------
Q 001261 701 -----------------------------------FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------- 737 (1112)
Q Consensus 701 -----------------------------------~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------- 737 (1112)
...++..|.. ...-++|+||-++..|+.++..|...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0011111111 11238999999999998887777521
Q ss_pred --------------------CC-------------CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 738 --------------------GY-------------PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 738 --------------------g~-------------~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
++ .+.++|+||-+..+..+...|..|-++||+||.+++.|||.|.-+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 245789999999999999999999999999999999999999877
Q ss_pred EEEE----eCC----CCCHhHHHHHhcccCCCCC--ccEEEEEecC
Q 001261 785 LVIN----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISE 820 (1112)
Q Consensus 785 ~VI~----~d~----p~s~~~y~QriGR~gR~G~--~g~~i~~~~~ 820 (1112)
+|+- ++- +-++..|.|+.||+||-|. .|.+|+.-.+
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 7762 221 3368899999999999886 4888877443
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=2e-23 Score=215.31 Aligned_cols=165 Identities=36% Similarity=0.619 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++|+.++.|+++|++||||+|||++|++|++..+... ....+||++|+++|+.|++..+..++...++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 23489999999999999999999999888889
Q ss_pred EEEEeCCCChH-HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC--
Q 001261 571 CVPVYGGSGVA-QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-- 647 (1112)
Q Consensus 571 ~~~~~gg~~~~-~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~-- 647 (1112)
+..++|+.... .....+..+++|+|+||++|.+++... .. ++.++++|||||+|.+...++...+..|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--KI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--SS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccCcchhhcccccc--cc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 99999999866 444555567999999999999998762 23 5667999999999999988888889888888743
Q ss_pred CCcEEEEeccccHHHHH
Q 001261 648 DRQTVLFSATFPRQVEI 664 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~ 664 (1112)
..|+|++|||+++.++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
No 107
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=3.6e-23 Score=244.87 Aligned_cols=342 Identities=23% Similarity=0.271 Sum_probs=241.9
Q ss_pred CCCHHHHH-HHHHCCCCCChHHHHHHH--HHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 473 GLTSKIME-TIRKLNYEKPMPIQAQAL--PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 473 ~L~~~l~~-~l~~~~~~~pt~iQ~~ai--~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.+++.+.. ..+..|+.+++.+|..++ |.++.++++|...||+.|||+++-+-|+..+... ...++++.|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 34444444 445689999999999987 6688999999999999999999999998877653 4568899999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
...+..-...+..|+..+|+.+-+.+|..+.... .+...|.|||.++-..++... ...-.+..+++|||||.|.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~l-ie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSL-IEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHH-HhcCCccccCcEEEeeeeee
Confidence 8888888888889999999998887766544322 234689999998754443321 11135778999999999999
Q ss_pred hccCChhHHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC-------CccEE------
Q 001261 630 FDMGFEPQITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-------DITQL------ 691 (1112)
Q Consensus 630 ~~~gf~~~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~-------~i~q~------ 691 (1112)
.+.+.+..+..++..+ ....|+|+||||+|+.- ++..++..-++.+ ..+++... .+...
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~~r~~~l 430 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYESSRNKVL 430 (1008)
T ss_pred eccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheec-ccCcccchhccCCCcccccchhhHHH
Confidence 9999888877776544 33467999999998642 2333333222111 00111000 00000
Q ss_pred ---E----EecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHhc--------------------------
Q 001261 692 ---V----EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH-------------------------- 737 (1112)
Q Consensus 692 ---~----~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~-------------------------- 737 (1112)
. ......+- ..++.++.+..+.+ ++||||+++..|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHhhhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0 00000000 12222222223334 6999999999999887665331
Q ss_pred ------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEe---CC-CCCHhHHHHH
Q 001261 738 ------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF---DA-PNHYEDYVHR 801 (1112)
Q Consensus 738 ------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~---d~-p~s~~~y~Qr 801 (1112)
.+.+.++|.|++.++|..+...|+.|.+.||+||+.++.|+|+|...++|-+ +. +.+...|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 3568899999999999999999999999999999999999999999988853 22 3467899999
Q ss_pred hcccCCCCC--ccEEEEEecCCccCchHHHH
Q 001261 802 VGRTGRAGR--KGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 802 iGR~gR~G~--~g~~i~~~~~~d~~~~~~i~ 830 (1112)
+|||||+|- .|.+|+++.+.+......++
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 999999974 58999999988876555444
No 108
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=2e-22 Score=244.39 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=230.5
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
-+..+.+.|.+|...+.+||.|+||||||++.-..+|.+..... ....+++--|.|--|.-+++.+.. .+...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45778889999999999999999999999988888887765532 233455555999888877766544 233334
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~ 647 (1112)
-.|...++..+. ....+.+++||.|.|+..|... ..+..++.||+||+| |-.+.+|.-.+.+.+-..++
T Consensus 249 ~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 334333333321 2234789999999999998663 578899999999999 77888898888888888899
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCC----------------ccEE------------EEeccc--
Q 001261 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD----------------ITQL------------VEVRPE-- 697 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~----------------i~q~------------~~~~~~-- 697 (1112)
+.++|+||||+. .+.|...|. ....+.+.+..++... ..+. +.+...
T Consensus 319 ~LkvILMSAT~d--ae~fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLD--AELFSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecc--hHHHHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999995 444544444 4444666655443221 0000 000001
Q ss_pred -chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+-+..|+..|......|.||||.++...+..+...|... .+-+.++|+.|+..++..++.....|..+||+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 1122334444444334689999999999999999999752 25688999999999999999999999999999
Q ss_pred ecCcccccCCCCCccEEEE--------eCCCC----------CHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 770 ATSVAARGLDVKELELVIN--------FDAPN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~--------~d~p~----------s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
||++|+.+|.|++|-+||+ ||+-. +.+.-.||.||+||. ..|.||.+|+..
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999999997 55533 345667999999997 489999999864
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=3.4e-22 Score=229.99 Aligned_cols=315 Identities=22% Similarity=0.324 Sum_probs=219.1
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..++++|.+.++++. .|-++|+..++|.|||++.+ .+|.+|.... .-.||. |||||...| ..|.++|.+|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~---~~~GPf-LVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRK---GIPGPF-LVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhc---CCCCCe-EEEeeHhhH-HHHHHHHHHh
Confidence 367899999999987 57789999999999998744 3444444321 123664 899998888 5588999999
Q ss_pred hhhcCceEEEEeCCCChHHHH-HHH--hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQI-SEL--KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~-~~l--~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+. ++++++.+|.......+ ..+ ....+|+|+|++..+.--. ++.--.+.|||||||||+-+. ...+..
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~--~s~L~~ 310 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNE--KSKLSK 310 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcch--hhHHHH
Confidence 87 56777777765333222 222 2257999999998765421 122235789999999999764 334446
Q ss_pred HHHhcCCCCcEEEEecccc-HHH---HH----------------------------------------------------
Q 001261 641 IVQNIRPDRQTVLFSATFP-RQV---EI---------------------------------------------------- 664 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT~~-~~~---~~---------------------------------------------------- 664 (1112)
++..+.... -+|+|+|+- +++ ..
T Consensus 311 ~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 311 ILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 666664443 455666631 111 11
Q ss_pred --------------------------------------------------HHHHhcCCCeEEEEcCcccccCCccEEEEe
Q 001261 665 --------------------------------------------------LARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (1112)
Q Consensus 665 --------------------------------------------------l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~ 694 (1112)
..++.++.|..+.- ..+. +....--++
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg--~pyttdehL 466 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPG--PPYTTDEHL 466 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCC--CCCCcchHH
Confidence 11222222221110 0000 111111122
Q ss_pred cccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEe
Q 001261 695 RPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIA 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVa 770 (1112)
...+.|+..|-.+|...... .+||||.......+.|..++.-.+|.++.|.|.++.++|...|+.|... .+-+|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 33445666666666665544 4999999999999999999999999999999999999999999999854 3567899
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEE--EecCC
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~--~~~~~ 821 (1112)
|-+.+.|||+..+++||.||..|+|..-+|..-||+|.|+...+++ |++.+
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999999998776544 56544
No 110
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=222.20 Aligned_cols=329 Identities=20% Similarity=0.272 Sum_probs=234.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+.-|...+.++...+.|++..-......+...+..+..++-++++|+||||||++.-...+....... ..+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~ 95 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVA 95 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------ccee
Confidence 366788888888888888775544445555666677778889999999999999865555554443321 2233
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
..-|.|..|+++ ..+++..|++...--+|.+..++++.. ..+-+-+||.|+|+...... ..|.++++||+|
T Consensus 96 CTQprrvaamsv---a~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~----p~l~~y~viiLD 166 (699)
T KOG0925|consen 96 CTQPRRVAAMSV---AQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD----PLLGRYGVIILD 166 (699)
T ss_pred ecCchHHHHHHH---HHHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC----cccccccEEEec
Confidence 444888888865 556677888888888888888777643 22455699999998876554 468899999999
Q ss_pred cch-hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 625 EAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 625 Eah-~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||| |.+..+....+.+-+..-+++..+|+||||+ ....|-..|.+-|+ +.+.+. ..+..++.-..+.+.+..
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl--~a~Kfq~yf~n~Pl-l~vpg~----~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATL--DAEKFQRYFGNAPL-LAVPGT----HPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeeccc--chHHHHHHhCCCCe-eecCCC----CceEEEecCCCChhHHHH
Confidence 999 6666555555555555556899999999998 44555555555555 555542 122223333344566665
Q ss_pred HHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhh---cC--Ccc
Q 001261 704 LLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFK---SN--VCN 766 (1112)
Q Consensus 704 ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~F~---~g--~~~ 766 (1112)
.+..+.+.. ..|.+|||..+.++++..|..+... .+.|+++| +.++..+++-.. +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 555544433 4789999999999999999988743 36788888 334444544333 23 357
Q ss_pred EEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 767 LLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
|+|+|++++..|.|++|.+||+.++ |.|-.+..||.||+||+. +|.|+.||++.
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 9999999999999999999998544 678888999999999984 99999999864
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=9.9e-21 Score=230.78 Aligned_cols=130 Identities=21% Similarity=0.332 Sum_probs=117.2
Q ss_pred cccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 695 RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+...++..|+..|..+.. +.++||||+++..++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||++
T Consensus 422 ~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 422 RPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred eeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3445677788888877654 458999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeC-----CCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 774 AARGLDVKELELVINFD-----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d-----~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+++|+|+|++++||+++ +|.+...|+||+|||||. ..|.|++|++..+..+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSM 557 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHH
Confidence 99999999999999988 799999999999999998 5899999998765443
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.9e-21 Score=242.40 Aligned_cols=337 Identities=21% Similarity=0.264 Sum_probs=221.6
Q ss_pred CChHHHHHHHHHHHcC---C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSG---R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++.|..++..++.. . .+++.||||+|||++.+++++..+... ....++++++.|++.++.+++..+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3488999999988843 4 788899999999999999999876652 1247789999999999999999999877
Q ss_pred hhcCceEEEEeCCCChHHHHHH-----H---------hcCCeEEEeCchHHHHHHHhcCCcc-cccCCceEEEeccchhh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISE-----L---------KRGTEIVVCTPGRMIDILCTSGGKI-TNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~-----l---------~~~~~IvV~Tp~~L~~~l~~~~~~~-~~l~~i~~vViDEah~~ 629 (1112)
...++.....+|.....-.... + .....++++||-.+........... ..+-..+++||||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6654433322333222111100 0 0012445555554433222111111 01123468999999988
Q ss_pred hccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc---ccCCccEEEEecccchhHHHHH
Q 001261 630 FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV---VNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 630 ~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~---~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
.+......+..++..+ ..+..+|+||||+|+.........+.....+....... ....+.+.....-.......+.
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 7653333344444333 34678999999999999888888777665444321100 0001111100000000001122
Q ss_pred H-HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh----hcCCccEEEecCcccccCCC
Q 001261 706 E-LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF----KSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 706 ~-~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F----~~g~~~VLVaT~v~~~GlDi 780 (1112)
. ........++++|.|||+..|..++..|+..+..++.|||.+...+|...+..+ +.+...|+|||+|++.||||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 2 222333457999999999999999999999877899999999999999888754 45678999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCC--CccEEEEEecCCccCchHHHHHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAG--RKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G--~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
. ++++|--=.| +...+||+||++|-| ..|.++++...............
T Consensus 511 d-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~ 561 (733)
T COG1203 511 D-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEK 561 (733)
T ss_pred c-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhc
Confidence 6 7777753334 778999999999999 56888877766655555444443
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=4.8e-21 Score=231.94 Aligned_cols=127 Identities=24% Similarity=0.300 Sum_probs=113.1
Q ss_pred ccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 696 PESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
....|+..++..+.... .+.++||||+|+..++.|+..|...|+++..||+ .+.+|+..+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 34468888888886644 3569999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCCC---Ccc-----EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 775 ARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 775 ~~GlDi~---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+||+||+ +|. +||++..|.+...|+|++|||||.|.+|.+++|++..|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 554 4488999999999999999999999999999999987654
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=8.3e-20 Score=203.80 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=142.9
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHH
Q 001261 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~ 727 (1112)
.|+|++|||+.+.-... .-++-+.-.+...+.+ ...+.+.+....+..|+..|.... .+.++||-+-|++.+
T Consensus 387 ~q~i~VSATPg~~E~e~---s~~~vveQiIRPTGLl----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQ---SGGNVVEQIIRPTGLL----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHh---ccCceeEEeecCCCCC----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 69999999986542211 1122333333333332 233556677778888888877644 356999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC-----CCHhHHHHHh
Q 001261 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-----NHYEDYVHRV 802 (1112)
Q Consensus 728 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p-----~s~~~y~Qri 802 (1112)
+.|..+|.+.|+.+..+|++...-+|..++..++.|.++|||.-+.+-.|||+|.|.+|.++|.. .|-.+.+|-|
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 4788999999
Q ss_pred cccCCCCCccEEEEEecCCccC---------chHHHHHHHhhccCCCChhHH
Q 001261 803 GRTGRAGRKGCAITFISEEDAK---------YSPDLVKALELSEQVVPDDLK 845 (1112)
Q Consensus 803 GR~gR~G~~g~~i~~~~~~d~~---------~~~~i~~~l~~~~~~vp~~l~ 845 (1112)
|||+|.- .|.+|++.+.-... .-..+...++.....+|..+.
T Consensus 540 GRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~ 590 (663)
T COG0556 540 GRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIK 590 (663)
T ss_pred HHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 9999964 78899877542221 112333345555566776543
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.1e-19 Score=216.30 Aligned_cols=280 Identities=23% Similarity=0.372 Sum_probs=200.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|| .|...|.--..-++.|+.+-++||||.|||+- .+.|-..+. ..|.+++||+||..|+.|+++.+.+|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHH-------hcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 454 89999999999999999999999999999963 333332322 236889999999999999999999999
Q ss_pred hhcC-ceEEEEeCCC-C---hHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-------
Q 001261 565 KVMG-VRCVPVYGGS-G---VAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~-i~~~~~~gg~-~---~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...+ +.+..+|.+. + ..+.+..+.+ +.+|+|+|..-|...+..- .. .++++|++|.+|.++-
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEEEccHHHHHhccccHHH
Confidence 8776 5555545554 2 2233455554 5799999988765554321 12 3588999999998753
Q ss_pred ----cCChhHH-------HHHHHhc------------------------CCCCcEEEEeccccHHH--HHHHHHhcCCCe
Q 001261 632 ----MGFEPQI-------TRIVQNI------------------------RPDRQTVLFSATFPRQV--EILARKVLNKPV 674 (1112)
Q Consensus 632 ----~gf~~~i-------~~il~~~------------------------~~~~q~il~SAT~~~~~--~~l~~~~~~~p~ 674 (1112)
.||...+ ..+...+ ....++|+.|||..+.- ..+.+.+++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 2343321 1111111 23357899999975432 334555555
Q ss_pred EEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCC---HHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS---QEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s---~~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
+.++.......+|...+... .-...+++++..+ +...|||++. .+.++.|+.+|..+|+++..+|+..
T Consensus 302 -FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~--- 372 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK--- 372 (1187)
T ss_pred -CccCccchhhhheeeeeccC---ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc---
Confidence 34555555555666655544 3344455555554 2367999999 9999999999999999999999843
Q ss_pred HHHHHHHHhhcCCccEEEec----CcccccCCCCC-ccEEEEeCCC
Q 001261 752 DRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAP 792 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~d~p 792 (1112)
...++.|..|+++|||++ .++-||||+|. +.++|+|++|
T Consensus 373 --~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 --EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred --hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999976 78899999998 8999999997
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=2.8e-19 Score=227.81 Aligned_cols=345 Identities=19% Similarity=0.211 Sum_probs=215.8
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 475 TSKIMETIRKLNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.+.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.+||+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcH
Confidence 34566677778886 8899998776 4557889999999999999999999987654 245799999999
Q ss_pred hHHHHHHH-HHHHHhhhcC--ceEEEEeCCCChH-----H----------H-------------------HHH-------
Q 001261 551 ELVQQIHS-DIRKFAKVMG--VRCVPVYGGSGVA-----Q----------Q-------------------ISE------- 586 (1112)
Q Consensus 551 eLa~Q~~~-~~~~~~~~~~--i~~~~~~gg~~~~-----~----------~-------------------~~~------- 586 (1112)
+|..|+.. .+..+.+.++ ++++++.|+...- . . +..
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 6766666555 7777777764320 0 0 000
Q ss_pred ------------------------------HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---
Q 001261 587 ------------------------------LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--- 633 (1112)
Q Consensus 587 ------------------------------l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--- 633 (1112)
....++|||+++..|+..+.... ..|....+|||||||+|.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHHHHH
Confidence 01125899999998877664322 234556899999999975310
Q ss_pred ----C-----hhH----------------------------------------------------------------HHH
Q 001261 634 ----F-----EPQ----------------------------------------------------------------ITR 640 (1112)
Q Consensus 634 ----f-----~~~----------------------------------------------------------------i~~ 640 (1112)
+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000 000
Q ss_pred HHHh---------------------c---------------------------CCCCcEEEEeccccH--HHHHHHHHhc
Q 001261 641 IVQN---------------------I---------------------------RPDRQTVLFSATFPR--QVEILARKVL 670 (1112)
Q Consensus 641 il~~---------------------~---------------------------~~~~q~il~SAT~~~--~~~~l~~~~~ 670 (1112)
.+.. . +....+|++|||++. ....+...+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 011357899999863 2333333332
Q ss_pred C-CCeEEEEcCcccccCCccEEEEe---c-----ccchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHh---
Q 001261 671 N-KPVEIQVGGRSVVNKDITQLVEV---R-----PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLK--- 736 (1112)
Q Consensus 671 ~-~p~~i~i~~~~~~~~~i~q~~~~---~-----~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~--- 736 (1112)
- +.....+...++....-...+.. . ........+...|.... ..|++||||+|...++.++..|..
T Consensus 620 l~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred CCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 2 22212221111111111111111 0 01122223444443322 357999999999999999999975
Q ss_pred -cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc--EEEEeCCCCC----H--------------
Q 001261 737 -HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE--LVINFDAPNH----Y-------------- 795 (1112)
Q Consensus 737 -~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~--~VI~~d~p~s----~-------------- 795 (1112)
.++.+ +..+.. ..|..+++.|++|...||+||+.+++|||+++.. +||+..+|.. +
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 23443 333333 5788999999999999999999999999999955 6677776642 1
Q ss_pred ------------hHHHHHhcccCCCCCccEEEEEecCC--ccCchHHHHHHHh
Q 001261 796 ------------EDYVHRVGRTGRAGRKGCAITFISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 796 ------------~~y~QriGR~gR~G~~g~~i~~~~~~--d~~~~~~i~~~l~ 834 (1112)
..+.|.+||+-|.....-++++++.. ...+-..+.+.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 12359999999987655456666654 4445566666664
No 117
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=6.4e-21 Score=229.60 Aligned_cols=328 Identities=19% Similarity=0.293 Sum_probs=214.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHH---HHHHHHHHHhcCCCCCCCC
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLA---FVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~---~llp~l~~l~~~~~~~~~~ 539 (1112)
..|..+...+..+.. ..++.+|...+++++ .+.++|+..++|.|||++ ||-.++.... -.
T Consensus 354 p~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~-------~~ 420 (1373)
T KOG0384|consen 354 PRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ-------IH 420 (1373)
T ss_pred hhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh-------cc
Confidence 345555444444332 678999999999987 678999999999999975 3333333221 13
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh----c-----CCeEEEeCchHHHHHHHhcCC
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK----R-----GTEIVVCTPGRMIDILCTSGG 610 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~-----~~~IvV~Tp~~L~~~l~~~~~ 610 (1112)
||. |||||...+ ..|..+|..++ .+++++.+|.....+.+.... . ..+++++|+..++.--..
T Consensus 421 gpf-lvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--- 492 (1373)
T KOG0384|consen 421 GPF-LVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--- 492 (1373)
T ss_pred CCe-EEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---
Confidence 564 888997665 45777787776 567777777665555554321 1 268999999987542211
Q ss_pred cccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc-HHHHHHHHHh-cCCCe--------------
Q 001261 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEILARKV-LNKPV-------------- 674 (1112)
Q Consensus 611 ~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~-~~~~~l~~~~-~~~p~-------------- 674 (1112)
+.--.+.+++|||||+|-+. ...+...+..+.... -||+|+|+- +.+..|...+ +-.|-
T Consensus 493 --L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~ 567 (1373)
T KOG0384|consen 493 --LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE 567 (1373)
T ss_pred --hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc
Confidence 11124679999999998753 334444455554333 466677742 2222211000 00000
Q ss_pred ----------------------------------E-EEE-----------------------cCcccccCCc--------
Q 001261 675 ----------------------------------E-IQV-----------------------GGRSVVNKDI-------- 688 (1112)
Q Consensus 675 ----------------------------------~-i~i-----------------------~~~~~~~~~i-------- 688 (1112)
. +.| |..+.. .++
T Consensus 568 ~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELk 646 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELK 646 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHH
Confidence 0 000 000000 000
Q ss_pred ---cEEEEecc-----------------------cchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 689 ---TQLVEVRP-----------------------ESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 689 ---~q~~~~~~-----------------------~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
.+.+.+.. .+.|+..|-.+|..+... .+||||...+...+.|+.||...+|++
T Consensus 647 KccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypf 726 (1373)
T KOG0384|consen 647 KCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPF 726 (1373)
T ss_pred HhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcc
Confidence 00000111 011111122233333333 599999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhh---cCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEE
Q 001261 742 LSLHGAKDQTDRESTISDFK---SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~ 816 (1112)
-.|.|.+..+.|..+|..|. +..+.+|+||-+.+-|||+-.+++||+||..|+|..-+|...||+|.|++.. +|.
T Consensus 727 QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYR 806 (1373)
T KOG0384|consen 727 QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYR 806 (1373)
T ss_pred eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEE
Confidence 99999999999999999998 3467899999999999999999999999999999999999999999998765 677
Q ss_pred EecCC
Q 001261 817 FISEE 821 (1112)
Q Consensus 817 ~~~~~ 821 (1112)
|+|..
T Consensus 807 LVTk~ 811 (1373)
T KOG0384|consen 807 LVTKN 811 (1373)
T ss_pred EecCC
Confidence 88865
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=3.1e-19 Score=219.62 Aligned_cols=147 Identities=19% Similarity=0.323 Sum_probs=129.5
Q ss_pred cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...++..|+..|..+.. +.++||||++...++.|+..|...|+++..+||++++.+|..++..|+.|.+.|||||++++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 44567778888877654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCC-----CCCHhHHHHHhcccCCCCCccEEEEEecC---------CccCchHHHHHHHhhccCCCC
Q 001261 776 RGLDVKELELVINFDA-----PNHYEDYVHRVGRTGRAGRKGCAITFISE---------EDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~g~~i~~~~~---------~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+......|...++.....+|
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999875 78999999999999996 68999999984 355566677777788788888
Q ss_pred hhH
Q 001261 842 DDL 844 (1112)
Q Consensus 842 ~~l 844 (1112)
...
T Consensus 587 ~~~ 589 (652)
T PRK05298 587 KTI 589 (652)
T ss_pred hhH
Confidence 754
No 119
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.5e-20 Score=208.45 Aligned_cols=345 Identities=20% Similarity=0.233 Sum_probs=249.5
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEc-CCCChH--HHHHHHHHHHHHhcCCCCCCC-----------------------C
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVA-KTGSGK--TLAFVLPMLRHIKDQPPVAAG-----------------------D 539 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a-~TGsGK--T~~~llp~l~~l~~~~~~~~~-----------------------~ 539 (1112)
.-..+|+.|.+.+-.+.+++|++..- ..+.|+ +-.|+|.+|+||.+.+.+..+ .
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34578999999999999999998763 335565 558999999998754322111 1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCc---------eEEEEeCC--------CChHHHHHHHhc-------------
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGV---------RCVPVYGG--------SGVAQQISELKR------------- 589 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i---------~~~~~~gg--------~~~~~~~~~l~~------------- 589 (1112)
.|+||||||+|+-|..+.+.+..++....- +...-|+| ...+++...+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 389999999999999998888777432211 11112332 112222222222
Q ss_pred ------------CCeEEEeCchHHHHHHHhcCCcc---cccCCceEEEeccchhhhccCChhHHHHHHHhcCCC------
Q 001261 590 ------------GTEIVVCTPGRMIDILCTSGGKI---TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD------ 648 (1112)
Q Consensus 590 ------------~~~IvV~Tp~~L~~~l~~~~~~~---~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~------ 648 (1112)
..+||||+|-.|..++...+.+. -.|+.|.++|||.||-|+ ++.|.++..|+.++...
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 36999999999988887443322 236889999999999877 56788899998877432
Q ss_pred ------------------CcEEEEeccccHHHHHHHHHhcCCCeE-EE----Ec--CcccccCCccEEE---Ee----cc
Q 001261 649 ------------------RQTVLFSATFPRQVEILARKVLNKPVE-IQ----VG--GRSVVNKDITQLV---EV----RP 696 (1112)
Q Consensus 649 ------------------~q~il~SAT~~~~~~~l~~~~~~~p~~-i~----i~--~~~~~~~~i~q~~---~~----~~ 696 (1112)
+|+++||+-..+.+..+...+|.+..- +. +. ..+.+...+.|.+ .+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 689999999888888888887765421 11 11 1111222233332 22 23
Q ss_pred cchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 697 ESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.+|..++..|...+. ...+|||+|+.-+...+.+++.+.++.+..||...+...-..+...|..|...||+.|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 45678887776654332 236899999999999999999999999999999999999999999999999999999998
Q ss_pred cc--ccCCCCCccEEEEeCCCCCHhHHHHHh---cccCCCC----CccEEEEEecCCccCchHHHHH
Q 001261 774 AA--RGLDVKELELVINFDAPNHYEDYVHRV---GRTGRAG----RKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 774 ~~--~GlDi~~v~~VI~~d~p~s~~~y~Qri---GR~gR~G----~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+. +..+|.+|..||+|.+|.+|..|...| +|+.--| ..-.|.++|++.|...+..|+-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 87 789999999999999999998886544 5543222 2357999999999888777764
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=9.3e-20 Score=211.39 Aligned_cols=314 Identities=21% Similarity=0.306 Sum_probs=208.5
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++++|+.++.++. ++...|+..++|.|||++.+. .|..|...... ...+|||||.. |..||..+|..|+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~----~~paLIVCP~T-ii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKL----TKPALIVCPAT-IIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccc----cCceEEEccHH-HHHHHHHHHHHhC
Confidence 56799999999986 466789999999999985332 22222222111 24589999974 6689999999997
Q ss_pred hhcCceEEEEeCCCCh------------HHH-HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 565 KVMGVRCVPVYGGSGV------------AQQ-ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~------------~~~-~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.. +++..++|-.+. ..+ +.....+..|+|+|+..|.- .+ ....-..+.|+|+||.|++-+
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~----~~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI----QG-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc----cC-cccccccccEEEecCcccccC
Confidence 65 455556554431 000 01112245799999886521 11 112223588999999999876
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEeccc-cHHHHHHHHH---h--------------cCCCeEEEEcCccc----------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATF-PRQVEILARK---V--------------LNKPVEIQVGGRSV---------- 683 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~-~~~~~~l~~~---~--------------~~~p~~i~i~~~~~---------- 683 (1112)
.. .++...+..++. .+-|++|+|+ .+.+..|... . +..| |.+|+...
T Consensus 352 pn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~p--I~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 352 PN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHP--INRGGYANASPRQVQTAY 426 (923)
T ss_pred Cc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhh--eeccccCCCCHHHHHHHH
Confidence 43 344444555533 4456666663 2222111100 0 0000 11110000
Q ss_pred -------------------------------------------------------------------ccCCccEEE----
Q 001261 684 -------------------------------------------------------------------VNKDITQLV---- 692 (1112)
Q Consensus 684 -------------------------------------------------------------------~~~~i~q~~---- 692 (1112)
...++.+.+
T Consensus 427 kca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 427 KCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 000000000
Q ss_pred -----------------EecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCHHHH
Q 001261 693 -----------------EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDR 753 (1112)
Q Consensus 693 -----------------~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~~~R 753 (1112)
-......|+..+..+|..|...| ++|+|..++...+.|..+|. ..||.++.+.|..+...|
T Consensus 507 dll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 507 DLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred ccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 00112357777888888887654 99999999999999999999 589999999999999999
Q ss_pred HHHHHHhhcCCc--cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecC
Q 001261 754 ESTISDFKSNVC--NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISE 820 (1112)
Q Consensus 754 ~~~~~~F~~g~~--~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~ 820 (1112)
..++..|.++.. -+|++|.|.+-|||+.+++-||+||+.|+|..-.|..-|+.|.|++..+ |.|++.
T Consensus 587 ~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 587 QKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred hHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999997763 4688999999999999999999999999999999999999999987544 445654
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.3e-19 Score=214.96 Aligned_cols=309 Identities=19% Similarity=0.277 Sum_probs=215.8
Q ss_pred CCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+.+-|..++..|... ...|+.|.||||||.+|+-.+-..+.. |.++|||+|-..|..|+...|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 35678999999999866 678999999999999998877766554 789999999999999998888775
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc---CCh-
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM---GFE- 635 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~---gf~- 635 (1112)
+|.++..+++|.+..+....+. ....|||||-..| +..|.++++|||||-|--.-. +..
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4578888899888776554433 4579999996543 257899999999999953211 122
Q ss_pred -hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccccc-CCccEEEEecccchhH-----HHHHHHH
Q 001261 636 -PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRF-----LRLLELL 708 (1112)
Q Consensus 636 -~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~-~~i~q~~~~~~~~~k~-----~~ll~~l 708 (1112)
..-..++..-..+.++||-|||+. ++.+.+-.-+..-.+.+..+.... ..-.+.+.+..+.... ..|++.|
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 222334444456788999999985 444444433333334443332211 1112223333322222 4566777
Q ss_pred Hhhhc-CCeEEEEeCCHHHH------------------------------------------------------------
Q 001261 709 GEWYE-KGKILIFVHSQEKC------------------------------------------------------------ 727 (1112)
Q Consensus 709 ~~~~~-~~~vLIF~~s~~~~------------------------------------------------------------ 727 (1112)
..... +.++|||+|.+..+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 65554 45899999876543
Q ss_pred HHHHHHHHhc--CCCeeeecCCCCHH--HHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC----------
Q 001261 728 DALFRDLLKH--GYPCLSLHGAKDQT--DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 728 ~~l~~~L~~~--g~~~~~ihg~~~~~--~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (1112)
+.+.+.|... +..++.+.++.... .-...+..|.+|+.+|||.|.+++.|+|+|++++|...|...
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 3444555443 56777777776553 356789999999999999999999999999999988765532
Q ss_pred --CHhHHHHHhcccCCCCCccEEEEEec
Q 001261 794 --HYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 794 --s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
...-+.|-.||+||++.+|.+++-..
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 24566888999999999998886543
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.9e-19 Score=208.08 Aligned_cols=321 Identities=19% Similarity=0.214 Sum_probs=222.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-.++.|. |....||+|||+++++|++...+. |..|.||+||--||.|-+.++..++
T Consensus 75 lg-~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LG-LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cC-CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 45 368999999998888874 778999999999999999877654 6789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-cc-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DM------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~------- 632 (1112)
..+|+++.++.++.+..+..... .|+|+++|..-|. ++|..+- ........+.|+||||+|.|+ |.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 99999999999988766544444 4899999987652 2332210 011224568899999999763 20
Q ss_pred -------CChhHHHHHHHhcCCC---------------------------------------------------------
Q 001261 633 -------GFEPQITRIVQNIRPD--------------------------------------------------------- 648 (1112)
Q Consensus 633 -------gf~~~i~~il~~~~~~--------------------------------------------------------- 648 (1112)
.....+..++..+..+
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0111122222222111
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef-~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL-R 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH-H
Confidence 11334444443322222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++.+.+...+....... ...+.....|+..++..+...... .+|||.|.++...+.|+..|.+.|+++..|++
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~-d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEA-DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHhCCcEEECCCCCCceeecCC-CceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 2222233222222222111111 122344567888888888766544 59999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC---------------CccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 747 AKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK---------------ELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~---------------~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
.-...+ ..++. ..|. ..|.|||++|+||.||. +=-+||--..+.|--.-.|-.||+||-|.
T Consensus 460 k~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 460 KNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred CchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 754333 33332 2454 46999999999999997 33478888888898888999999999999
Q ss_pred ccEEEEEecCCcc
Q 001261 811 KGCAITFISEEDA 823 (1112)
Q Consensus 811 ~g~~i~~~~~~d~ 823 (1112)
+|.+..|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 9999999986654
No 123
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.81 E-value=3.1e-18 Score=195.58 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=221.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh-------------cCce------EEEEeCCCChHHHHHHHhcC----------
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------------MGVR------CVPVYGGSGVAQQISELKRG---------- 590 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~-------------~~i~------~~~~~gg~~~~~~~~~l~~~---------- 590 (1112)
.|+||||||+|..|..+.+.+..++.. +|+. ..........+.+...+..|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 599999999999999998888776644 1210 00001111233333333332
Q ss_pred ---------------CeEEEeCchHHHHHHHhc---CCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC----
Q 001261 591 ---------------TEIVVCTPGRMIDILCTS---GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---- 648 (1112)
Q Consensus 591 ---------------~~IvV~Tp~~L~~~l~~~---~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~---- 648 (1112)
+|||||+|-.|...+... ......|++|.++|||.||.|+ |+.|.++..|+.+++..
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCC
Confidence 699999999998888752 2223348999999999999776 78899999998877432
Q ss_pred --------------------CcEEEEeccccHHHHHHHHHhcCCC---eEEEEcCc-----ccccCCccEEEEecc----
Q 001261 649 --------------------RQTVLFSATFPRQVEILARKVLNKP---VEIQVGGR-----SVVNKDITQLVEVRP---- 696 (1112)
Q Consensus 649 --------------------~q~il~SAT~~~~~~~l~~~~~~~p---~~i~i~~~-----~~~~~~i~q~~~~~~---- 696 (1112)
+|+|+||+...+.+..+....+.|. +.+..... ..+...+.|.+.-.+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 7999999999999999999877765 22222222 234456777775332
Q ss_pred ---cchhHHHHHHHHHhhh----cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 697 ---ESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ---~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+.++..+...+...+ ..+.+|||+++.-+...|.++|.+.++.++.+|...++.+-..+...|..|...||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 3456666666433322 346899999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc--ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC------ccEEEEEecCCccCchHHHHHH
Q 001261 770 ATSVAA--RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR------KGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 770 aT~v~~--~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~------~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
.|.-+. +-..|.++..||+|.+|.++..|...+.-.+.... ...|.+||+..|...++.|+-.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999887 78999999999999999999999888866554432 5789999999998888887743
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=4.2e-18 Score=210.46 Aligned_cols=322 Identities=18% Similarity=0.195 Sum_probs=190.9
Q ss_pred ChHHHHHHHHHHH----c------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----S------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|.++|..|+..++ . .+..|++.+||||||++++..+...+.. ...+++|||||+.+|..|+...
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------cCCCeEEEEECcHHHHHHHHHH
Confidence 6789999988764 2 2568999999999999876665544321 2468999999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i 638 (1112)
|..+... +..+..+.......+.. ...|+|+|...|...+.........-..--+||+||||+... ..+
T Consensus 313 f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~ 382 (667)
T TIGR00348 313 FQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GEL 382 (667)
T ss_pred HHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHH
Confidence 9887531 11111222222233332 368999999999764432111111101113899999998542 234
Q ss_pred HHHHHhcCCCCcEEEEeccccHHHHHHH-HHh---cCCCeEEEEcCcccccCCcc----EE-E----Eec----------
Q 001261 639 TRIVQNIRPDRQTVLFSATFPRQVEILA-RKV---LNKPVEIQVGGRSVVNKDIT----QL-V----EVR---------- 695 (1112)
Q Consensus 639 ~~il~~~~~~~q~il~SAT~~~~~~~l~-~~~---~~~p~~i~i~~~~~~~~~i~----q~-~----~~~---------- 695 (1112)
..++...-++...|+||||+-....... ..+ ++.++.. ..-...+...+. .. . .+.
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 4444333356789999999853211000 111 1122211 100000000000 00 0 000
Q ss_pred -----c-----------------------cchhHHHHHHHHHhhh----c--CCeEEEEeCCHHHHHHHHHHHHhc----
Q 001261 696 -----P-----------------------ESDRFLRLLELLGEWY----E--KGKILIFVHSQEKCDALFRDLLKH---- 737 (1112)
Q Consensus 696 -----~-----------------------~~~k~~~ll~~l~~~~----~--~~~vLIF~~s~~~~~~l~~~L~~~---- 737 (1112)
+ ....+..+...+...+ . .++++|||.++..|..+...|...
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0 0001111122222111 1 379999999999999999988664
Q ss_pred -CCCeeeecCCCCHH---------------------HHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEEeCCCCC
Q 001261 738 -GYPCLSLHGAKDQT---------------------DRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINFDAPNH 794 (1112)
Q Consensus 738 -g~~~~~ihg~~~~~---------------------~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s 794 (1112)
+..++.+++..... ....++..|++ +..+|||.++++.+|+|+|.+++++..-+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 34566677654332 12468889976 67899999999999999999999997665554
Q ss_pred HhHHHHHhcccCCC-C--C-ccEEEEEecCCccCchHHHHHHHh
Q 001261 795 YEDYVHRVGRTGRA-G--R-KGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G--~-~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
..++|.+||+.|. + + .|.++-|+.. ...|.++|.
T Consensus 622 -h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~ 659 (667)
T TIGR00348 622 -HGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALS 659 (667)
T ss_pred -cHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHH
Confidence 4689999999994 3 2 2444444432 345555553
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.6e-18 Score=204.11 Aligned_cols=322 Identities=18% Similarity=0.206 Sum_probs=216.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+--++.. .-|....||+|||+++++|++...+. |..|.||+||--||.|.+.++..++
T Consensus 79 lG-m~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hC-CCcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 55 4677888766555544 45888999999999999999876554 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.+.++.++.+..+....+. ++|+|||..-| .|+|..+- ........+.|+||||+|.+| |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999988887666544444 89999999886 33332210 001124778999999999764 210
Q ss_pred ---------ChhHHHHHHHhcCC--------------------CC-----------------------------------
Q 001261 634 ---------FEPQITRIVQNIRP--------------------DR----------------------------------- 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~--------------------~~----------------------------------- 649 (1112)
+...+..++..+.. .+
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 11112222222210 00
Q ss_pred --------------------------------------------------------------------------------
Q 001261 650 -------------------------------------------------------------------------------- 649 (1112)
Q Consensus 650 -------------------------------------------------------------------------------- 649 (1112)
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCD 728 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~ 728 (1112)
.+.+||+|....... ...+++-++.+.....+........ .++.....|+..++..+...... .+|||-+.|++..+
T Consensus 386 kLsGMTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 386 KLSGMTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hhccCCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 122222222211111 1122222222222222222111211 23344567888888888776654 49999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC--------------------------
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK-------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~-------------------------- 781 (1112)
.|+..|...|++.-+++......+ ..++. ..|. ..|.|||++|+||.||.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999888888644333 22332 3553 56999999999999995
Q ss_pred -----------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 782 -----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 -----------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2346777778888888889999999999999999999876543
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=1.5e-18 Score=204.26 Aligned_cols=298 Identities=20% Similarity=0.215 Sum_probs=195.3
Q ss_pred CCChHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|+.+|..||..+. .| +.+|+++.||+|||.+++..+...+.. +.-.++|+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc------chhheeeEEechHHHHHHHHHHHHH
Confidence 468999999998765 44 348999999999998876655554443 3467899999999999999999888
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--CcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+... +-.+..+.+.... ..+.|.|+|+..|...+.... ...+....+++||||||||-. ......
T Consensus 238 ~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 7654 2222222221111 148999999999988876542 122344568999999999843 444557
Q ss_pred HHHhcCCCCcEEEEeccccHHHHHHHHHhc-CCCeEEEE----------------------cCcccccCCc----c----
Q 001261 641 IVQNIRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQV----------------------GGRSVVNKDI----T---- 689 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT~~~~~~~l~~~~~-~~p~~i~i----------------------~~~~~~~~~i----~---- 689 (1112)
|+.++..-. +++|||+...+..---.|+ +.|+...- ...+...... .
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 777665433 3449998654433323333 44433221 0000000000 0
Q ss_pred ------EEEEecc------cchhHHHHHHHHHhhhc-------CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeec
Q 001261 690 ------QLVEVRP------ESDRFLRLLELLGEWYE-------KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLH 745 (1112)
Q Consensus 690 ------q~~~~~~------~~~k~~~ll~~l~~~~~-------~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ih 745 (1112)
+.+...+ -......+...|..+.. .+++||||.+..+|+.+...|... |--|..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000000 00011122233333222 358999999999999999999764 34477788
Q ss_pred CCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC
Q 001261 746 GAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~ 808 (1112)
|.-.+.. ..+..|.. --..|.|+.+++.+|||+|.|.++|++-.-.|..-|.|++||+-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 8665543 34666654 2357888999999999999999999999999999999999999984
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=4.8e-18 Score=179.03 Aligned_cols=188 Identities=39% Similarity=0.646 Sum_probs=156.8
Q ss_pred HCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++..|+++|.++++.++.. +.+++.++||+|||++++.+++.++.... ...+||++||..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 356788999999999999999 99999999999999999999998876532 45799999999999999999998
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCC-eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
++..........+++......+..+..+. +|+++|++.|.+.+.... ..+..+.+|||||+|.+....+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 87665545566677776566666666666 999999999998886543 35667889999999998865788888888
Q ss_pred HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
+..+++..+++++|||++..+...+..++.+++.+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999999999999988777666543
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.3e-17 Score=194.48 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=216.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++..| .|....||-|||+++.+|++-+.+. |..|-||+..--||..=..++..++
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 554 6888888887776666 4789999999999999999765443 5567788888999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCC---cccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.|.++..+....+..... .|+|++||..-| .++|..+-. ...-...+.|.||||+|.++ |..
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 99999999998877666544443 489999999876 334432210 01124678899999999753 211
Q ss_pred ---------ChhHHHHHHHhcCCC-------Cc-----------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------RQ----------------------------------------------- 650 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------~q----------------------------------------------- 650 (1112)
+...+..++..+... ..
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 111222222222210 11
Q ss_pred --------------------------------------------------------------EEEEeccccHHHHHHHHH
Q 001261 651 --------------------------------------------------------------TVLFSATFPRQVEILARK 668 (1112)
Q Consensus 651 --------------------------------------------------------------~il~SAT~~~~~~~l~~~ 668 (1112)
+.+||+|.-.....|. .
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-D 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-H
Confidence 2223333222222221 1
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+++-.+.+.+...+........ ..+.....|+..++..+..... +.+|||.|.|+...+.|+..|.+.|++..+++..
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred HhCCCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 2222222221111111111111 2234456788888888876654 4599999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCcc--------EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 748 KDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKELE--------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v~--------~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
-. .++..+-. ..|. ..|.|||++|+||.||.--. +||....|.|----.|-.||+||.|.+|.+..|+
T Consensus 460 ~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 460 QN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred ch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 43 33322222 4564 57999999999999997432 8898889988888889999999999999999998
Q ss_pred cCCccC
Q 001261 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+-.|.-
T Consensus 537 SLeD~L 542 (925)
T PRK12903 537 SLDDQL 542 (925)
T ss_pred ecchHH
Confidence 866543
No 129
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.78 E-value=2.8e-17 Score=196.82 Aligned_cols=319 Identities=20% Similarity=0.255 Sum_probs=200.8
Q ss_pred CChHHHHHHHHHHHc---C-------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 489 KPMPIQAQALPVIMS---G-------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~---g-------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.++|+|.+++..+.. | ..+|+...+|+|||++.+..|...+...| ....--.++|||||. .|+.-|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P-~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP-QAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc-CccccccccEEEccH-HHHHHHHH
Confidence 466999999988752 2 24677789999999986655555554433 211223578999995 68899999
Q ss_pred HHHHHhhhcCceEEEEeCCCCh--HHHHHHH-----hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGV--AQQISEL-----KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l-----~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+|.+|.....+....++|+... ..+...+ .-..-|++.+++.+.+.+.. ..+..+++||+||.|++-+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCCCccc
Confidence 9999987666777888888764 1111111 11246788888888766543 4566789999999999765
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEecccc-HHHH-----------------------------------------------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFP-RQVE----------------------------------------------- 663 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~-~~~~----------------------------------------------- 663 (1112)
. ...+...+..+... .-|++|+|+- +++.
T Consensus 391 ~--~s~~~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 3 23444444455333 3566777741 1111
Q ss_pred ----HHHHHh-----------------------------------------------------------cCCCeEEEEcC
Q 001261 664 ----ILARKV-----------------------------------------------------------LNKPVEIQVGG 680 (1112)
Q Consensus 664 ----~l~~~~-----------------------------------------------------------~~~p~~i~i~~ 680 (1112)
.+...| ++.|..+....
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 111111 11111100000
Q ss_pred cc-----cccCC-ccEE--EEe----cccchhHHHHHHHHHhhhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 681 RS-----VVNKD-ITQL--VEV----RPESDRFLRLLELLGEWYEK--GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 681 ~~-----~~~~~-i~q~--~~~----~~~~~k~~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.. ..+.. ..+. +.. .....++..|..+|...... ..+++..|.....+.+...+.-.|+.++.+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 00 00000 0000 000 00122444444444332211 13334445555555555555556999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 747 AKDQTDRESTISDFKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.|+..+|..++..|.+-. .-+|.+|.+.+.||++-+++.||.||++|+|+.-.|.++|+.|.|++-.||+|
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999998543 34677888999999999999999999999999999999999999998777664
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=1.2e-16 Score=200.76 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=205.6
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHH
Q 001261 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSD 559 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~ 559 (1112)
.|| .+++-|.+.+..|. .+..+++.|+||+|||++|++|++... .++++||++||++|+.|+ ...
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 344 68999998665544 567899999999999999999988653 256899999999999999 577
Q ss_pred HHHHhhhcCceEEEEeCCCChH-----HH-----------------------------HHHH------------------
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVA-----QQ-----------------------------ISEL------------------ 587 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~-----~~-----------------------------~~~l------------------ 587 (1112)
+..+.+.+++.+.++.|+.+.- .+ +..+
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 8888888888888888775321 00 0000
Q ss_pred -------------------hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-----Ch-------h
Q 001261 588 -------------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FE-------P 636 (1112)
Q Consensus 588 -------------------~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-----f~-------~ 636 (1112)
...++|||+++..|+..+.... .+..+.+|||||||+|.+.. .. .
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~ 467 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQ 467 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHH
Confidence 0125899999998877664432 35678999999999874311 00 0
Q ss_pred HH-------------------------------------------------------------HHHHHh------c----
Q 001261 637 QI-------------------------------------------------------------TRIVQN------I---- 645 (1112)
Q Consensus 637 ~i-------------------------------------------------------------~~il~~------~---- 645 (1112)
.+ ..++.. +
T Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~ 547 (820)
T PRK07246 468 TIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEK 547 (820)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 00 000000 0
Q ss_pred -----------------------CCCCcEEEEecccc--HHHHHHHHHhcC-CCeEEEEcCcccccCCccEEEEec---c
Q 001261 646 -----------------------RPDRQTVLFSATFP--RQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVR---P 696 (1112)
Q Consensus 646 -----------------------~~~~q~il~SAT~~--~~~~~l~~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~---~ 696 (1112)
+....+|++|||++ +... +...+.- ......+. ..... .+.+.+. +
T Consensus 548 ~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~~~~p 622 (820)
T PRK07246 548 QSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVDQDMP 622 (820)
T ss_pred CCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeCCCCC
Confidence 01135788899985 2222 3322221 11111111 11111 1111111 1
Q ss_pred ------cchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 697 ------ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ------~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.......+...|.... .+|++|||++|....+.++..|....+.+ ...|... .+..+++.|+.+...||+
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 1122334444443322 46899999999999999999997665555 4444322 246689999999899999
Q ss_pred ecCcccccCCCCC--ccEEEEeCCCC----C--------------------------HhHHHHHhcccCCCCCccEEEEE
Q 001261 770 ATSVAARGLDVKE--LELVINFDAPN----H--------------------------YEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 770 aT~v~~~GlDi~~--v~~VI~~d~p~----s--------------------------~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
+|..+.+|||+|+ ...||+..+|. + ...+.|.+||.-|....--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999974 56667766653 2 12235999999998653334555
Q ss_pred ecCC--ccCchHHHHHHHh
Q 001261 818 ISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 818 ~~~~--d~~~~~~i~~~l~ 834 (1112)
+++. ...+-..+.+.|.
T Consensus 780 lD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 780 LDRRILTKSYGKQILASLA 798 (820)
T ss_pred ECCcccccHHHHHHHHhCC
Confidence 5543 3445566666664
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.77 E-value=2.1e-17 Score=198.47 Aligned_cols=322 Identities=20% Similarity=0.287 Sum_probs=210.5
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc-EEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV-GLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~-~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++.||++.++++. -+=+.|+|..+|.|||++.+-.+.......+.......+. .|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 45789999999875 2347899999999999976655554443332212222233 7999995 7999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+.. +++...+|+......+..-.+..+|||++|+.+.+-+.. +.-..+.|+|+||-|-|-+. ...+.+.++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 886 455555565544444444445689999999988543321 11235789999999987653 345556666
Q ss_pred hcCCCCcEEEEecccc-HHHH---HHHHHh--------------------------------------------------
Q 001261 644 NIRPDRQTVLFSATFP-RQVE---ILARKV-------------------------------------------------- 669 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~-~~~~---~l~~~~-------------------------------------------------- 669 (1112)
.++... .+++|+|+- +++. .+..++
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 666555 355677741 1100 000000
Q ss_pred --------cCC-C-----------------------------eEEEEcCc--cccc--CCccE------------EEEec
Q 001261 670 --------LNK-P-----------------------------VEIQVGGR--SVVN--KDITQ------------LVEVR 695 (1112)
Q Consensus 670 --------~~~-p-----------------------------~~i~i~~~--~~~~--~~i~q------------~~~~~ 695 (1112)
+.+ | +...+.+. +... ..|.| .+...
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 000 0 00000000 0000 00000 00000
Q ss_pred -----------------------ccchhHHHHHHHHHhhh---------------cCCeEEEEeCCHHHHHHHHHHHHhc
Q 001261 696 -----------------------PESDRFLRLLELLGEWY---------------EKGKILIFVHSQEKCDALFRDLLKH 737 (1112)
Q Consensus 696 -----------------------~~~~k~~~ll~~l~~~~---------------~~~~vLIF~~s~~~~~~l~~~L~~~ 737 (1112)
....|+..|-++|.... ...++||||.-+..++.+.+.|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 11234444545554432 1248999999999999999999875
Q ss_pred ---CCCeeeecCCCCHHHHHHHHHHhhcC-CccEEE-ecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 738 ---GYPCLSLHGAKDQTDRESTISDFKSN-VCNLLI-ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 738 ---g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VLV-aT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
.+..+.+.|..++.+|.++...|.++ .++||+ +|.|.+-|||+.++++||+++-.|+|-.-+|.+-||+|.|++-
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 34456899999999999999999998 678765 6789999999999999999999999999999999999999876
Q ss_pred E--EEEEecCC
Q 001261 813 C--AITFISEE 821 (1112)
Q Consensus 813 ~--~i~~~~~~ 821 (1112)
. +|.|++..
T Consensus 1444 vVNVyRlItrG 1454 (1549)
T KOG0392|consen 1444 VVNVYRLITRG 1454 (1549)
T ss_pred eeeeeeehhcc
Confidence 5 56666653
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.75 E-value=4.3e-17 Score=189.23 Aligned_cols=318 Identities=20% Similarity=0.290 Sum_probs=208.9
Q ss_pred ChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 490 PMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+-++|.-.++++. .+-+.|+..++|.|||.+.+ +.|..|.... ..||. |||||...| .-|..+|.+||.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g----~~gpH-LVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIG----NPGPH-LVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcC----CCCCc-EEEecchhH-HHHHHHHHHhCC
Confidence 5689999999875 45677999999999998644 3444444421 23554 999999887 557789999987
Q ss_pred hcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
. +++.+.||.......+.... .+++|+|+|+.....-- ....++.-.++.++|+||+|.|-+++ ...+..+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 56666777665555443332 25799999997553100 00011122467899999999987765 1222222
Q ss_pred HHhcCCCCcEEEEecccc-HHHHHH-------------------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFP-RQVEIL------------------------------------------------------- 665 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-~~~~~l------------------------------------------------------- 665 (1112)
+ .++ ..+.||+|+|+- +++..|
T Consensus 548 M-~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 M-SIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred c-ccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 2 122 334566677731 000000
Q ss_pred -----------------------------------------------------------HHHhcCCCeEEEEcC------
Q 001261 666 -----------------------------------------------------------ARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 666 -----------------------------------------------------------~~~~~~~p~~i~i~~------ 680 (1112)
.++..++|+.+....
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 000000110000000
Q ss_pred ---------cccccC---------------CccE---------EEE----ecccchhHHHHHHHHHhhhcC-CeEEEEeC
Q 001261 681 ---------RSVVNK---------------DITQ---------LVE----VRPESDRFLRLLELLGEWYEK-GKILIFVH 722 (1112)
Q Consensus 681 ---------~~~~~~---------------~i~q---------~~~----~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~ 722 (1112)
...... .+++ .+. ..-.+.|+..|..+|...... .+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 000000 0000 000 011234666666777665554 59999999
Q ss_pred CHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHH
Q 001261 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Q 800 (1112)
.....+.|..+|...++.++.+.|.....+|..++..|...+ +-+|++|-+.+-|||+..+++||.||+..+|-+-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999998654 567999999999999999999999999999999999
Q ss_pred HhcccCCCCCcc--EEEEEecCC
Q 001261 801 RVGRTGRAGRKG--CAITFISEE 821 (1112)
Q Consensus 801 riGR~gR~G~~g--~~i~~~~~~ 821 (1112)
.--||+|.|+.- ++|.|+++.
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecC
Confidence 999999999864 466677754
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.75 E-value=2.1e-16 Score=174.58 Aligned_cols=326 Identities=15% Similarity=0.188 Sum_probs=219.2
Q ss_pred CCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+.|+|.+.+...+ .|..+|+..++|.|||++++..+..+.... | .|||||.. |-..|.+.+..|+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw--------p-lliVcPAs-vrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW--------P-LLIVCPAS-VRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC--------c-EEEEecHH-HhHHHHHHHHHhccc
Confidence 356799999998776 567788889999999999887666655443 2 48899964 557888999998775
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
... +.++.++...... +-....|.|.++..|..+-.. ..-..+.+||+||.|.+-+.. -.....++..+.
T Consensus 267 ~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk 336 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLK 336 (689)
T ss_pred ccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhhhhHHH
Confidence 433 5556666544322 223357999999987554322 223348999999999886543 333455555555
Q ss_pred CCCcEEEEecccc-------------------HHHHHHHHHhcCCC---eEEEEcCcc----------------------
Q 001261 647 PDRQTVLFSATFP-------------------RQVEILARKVLNKP---VEIQVGGRS---------------------- 682 (1112)
Q Consensus 647 ~~~q~il~SAT~~-------------------~~~~~l~~~~~~~p---~~i~i~~~~---------------------- 682 (1112)
.-..+||+|+|+. +....|+..|+..- +.....+.+
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5567999999952 22334555555421 111111100
Q ss_pred --cccCCccEEEEecccc-------------------------------------hhHHHHHHHHHhhh-----cCCeEE
Q 001261 683 --VVNKDITQLVEVRPES-------------------------------------DRFLRLLELLGEWY-----EKGKIL 718 (1112)
Q Consensus 683 --~~~~~i~q~~~~~~~~-------------------------------------~k~~~ll~~l~~~~-----~~~~vL 718 (1112)
..+..-.+.+.+.... .|...+.+.|...+ +..++|
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 0111112222222110 02222333333311 234899
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccE-EEecCcccccCCCCCccEEEEeCCCCCHh
Q 001261 719 IFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNL-LIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~V-LVaT~v~~~GlDi~~v~~VI~~d~p~s~~ 796 (1112)
|||.-+...+.+...+...++..+.|.|..+..+|....+.|+.. ++.| +++-.+++.||++....+||+..++|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999854 4444 55667889999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEe--cC--CccCchHHHHHHH
Q 001261 797 DYVHRVGRTGRAGRKGCAITFI--SE--EDAKYSPDLVKAL 833 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~i~~~--~~--~d~~~~~~i~~~l 833 (1112)
-.+|.-.|++|.|++..+.+.| .+ -|...+..|.+.|
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999987655444 22 2444444444444
No 134
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=3e-17 Score=181.00 Aligned_cols=308 Identities=18% Similarity=0.210 Sum_probs=194.5
Q ss_pred CCChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|+|..++..++.+ +..||+-|+|+|||++-+-++.. -...|||||.+-.-+.||...|+.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-----------ikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-----------IKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----------ecccEEEEecCccCHHHHHHHHHhhc
Confidence 46789999999998843 68999999999999875544331 14578999999999999999999987
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--C---cccccCCceEEEeccchhhhccCChhHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--G---KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~---~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
..-.-.++..+.... .....++.|+|+|+.++..--.+.. . ....-..++++||||+|.+..+-|...+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 654444444443331 2244678999999987632110000 0 00122568999999999876555555554
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHH-HhcCCC--------------eEEEEcCcccccC------------Cc--cE
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVEILAR-KVLNKP--------------VEIQVGGRSVVNK------------DI--TQ 690 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~-~~~~~p--------------~~i~i~~~~~~~~------------~i--~q 690 (1112)
-+-.+. .+++|||+-..-..+.. .|+-.| ....+.-..+.+. +. ..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 444443 47899997433211100 011111 0001100011000 00 11
Q ss_pred EEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh-cCCccEE
Q 001261 691 LVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK-SNVCNLL 768 (1112)
Q Consensus 691 ~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~-~g~~~VL 768 (1112)
.+.+ -...||...--+|.... .+.++|||..+.-....++-.|.+ -+|+|..+|.+|..|++.|+ +..++-|
T Consensus 520 lLyv-MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 520 LLYV-MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eeee-cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 1111 12234433222222211 356999999988777777666532 36899999999999999999 5567888
Q ss_pred EecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCC------ccEEEEEecCCc
Q 001261 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGR------KGCAITFISEED 822 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~------~g~~i~~~~~~d 822 (1112)
+-+.|+...||+|.++++|....-. |--+-.||+||+.|+-+ ....|+|++.+.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 8889999999999999999865543 45667899999998632 244566666543
No 135
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.73 E-value=2.4e-16 Score=173.44 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhhhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcc
Q 001261 700 RFLRLLELLGEWYEK---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVA 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~---~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~ 774 (1112)
|+..|.+.|...... -+.|||.......+.+...|.+.|+.|+-+-|+|++..|..+++.|++.. +. +||+-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 445555555443333 37899999999999999999999999999999999999999999999764 44 46777888
Q ss_pred cccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc--cEEEEEecC
Q 001261 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK--GCAITFISE 820 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~--g~~i~~~~~ 820 (1112)
+..||+..++.|+++|+.|+++.-.|...|+.|.|+. =.++.|+-+
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 8999999999999999999999999999999999864 346666654
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.72 E-value=7.7e-16 Score=186.09 Aligned_cols=280 Identities=19% Similarity=0.186 Sum_probs=180.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++ ....|+.+.||.|||+++++|++-..+. |..|-||+++..||.+-+.++..++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 554 4778777665444 4567889999999999999999755432 6678999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.|.++.++.+..+..... .|+|+++|..-|. ++|..+- ........+.|+||||+|.|+ |..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 99999999999888776654443 3899999997552 3332211 011124668899999999753 210
Q ss_pred ---------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+..+
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 111111111111110
Q ss_pred ------------------------------------------------------------CcEEEEeccccHHHHHHHHH
Q 001261 649 ------------------------------------------------------------RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 649 ------------------------------------------------------------~q~il~SAT~~~~~~~l~~~ 668 (1112)
..+.+||+|.......| ..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HH
Confidence 11344444443322222 33
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+++-++.+.+...+....... ..++.....|+..++..+..... +.+|||.|.|+...+.|+..|...|++..++++.
T Consensus 379 iY~l~vv~IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 379 IYNLEVVCIPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HhCCCEEECCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 333333222222222221121 12334455688888877766554 4599999999999999999999999999999986
Q ss_pred CCH-HHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001261 748 KDQ-TDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 748 ~~~-~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
-.. ..=..++.. .|. ..|.|||++|+||.||.
T Consensus 458 ~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 458 PENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 422 222334433 454 56999999999999984
No 137
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1e-16 Score=178.64 Aligned_cols=350 Identities=14% Similarity=0.110 Sum_probs=237.8
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..++.+.-.....+|..+|..+-.|+.+++.-.|.+||.++|.+.....+..-+ ....|++.||.+|+.....-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 344555556677999999999999999999999999999999988776654422 23458888999987643221
Q ss_pred HHH---HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CcccccCCceEEEeccchhhhccCCh
Q 001261 560 IRK---FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFE 635 (1112)
Q Consensus 560 ~~~---~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~~gf~ 635 (1112)
+.- ..+...-.++-.+.|.+......-+..+..++++.|..++..+.-+. -+...+-...++++||+|..+-. |.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hh
Confidence 111 01112223455667776666666667789999999998866543321 12223445668999999954321 22
Q ss_pred h----HHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEeccc--------
Q 001261 636 P----QITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPE-------- 697 (1112)
Q Consensus 636 ~----~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~-------- 697 (1112)
. ++..++..+ ..+.|++-.|||+...+......+.-+- ..+++++.+. .-..++.+.+.
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchhh
Confidence 2 223332222 3468999999998776654443333333 3344444332 22333433321
Q ss_pred -chhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHhc----C----CCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 698 -SDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH----G----YPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~----g----~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.++.....++.+....+ ++|-||+++..|+.|....... + -.+..+.||....+|.++....-.|...-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 234444445555544444 8999999999999887665432 2 13667899999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe--cCCccCchHHHHHHHhhccCC
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI--SEEDAKYSPDLVKALELSEQV 839 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~--~~~d~~~~~~i~~~l~~~~~~ 839 (1112)
+|||++++-||||.+++.|++.++|.|++.+.|+.||+||-.+...++.++ .|-|..++..-...+...+..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 999999999999999999999999999999999999999988877665544 455666665555555444333
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.70 E-value=1.2e-15 Score=179.91 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh-hc
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK-VM 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~-~~ 567 (1112)
.|-.+|...+..+-.+..++|+|||.+|||.+-...|=.++.. .....+|+++||.+|++|+...+...+. ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 5778999999999999999999999999998655544444443 2356789999999999999888877552 22
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
-.+.+.+.|.....-++..+ .|+|+|+-|+-|..+|..-........++.+||+||+|.+.++.-.-.+..++..++
T Consensus 585 ~~rg~sl~g~ltqEYsinp~--nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINPW--NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCCch--hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 23334444444444443322 499999999999888866333334578899999999999987664555556655553
Q ss_pred CCcEEEEeccccH
Q 001261 648 DRQTVLFSATFPR 660 (1112)
Q Consensus 648 ~~q~il~SAT~~~ 660 (1112)
+.+|++|||+.+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 469999999743
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=2.9e-16 Score=154.26 Aligned_cols=120 Identities=42% Similarity=0.674 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..+...+..++.... ..+++||||++...++.++..|...++.+..+||+++..+|..++..|.+|...|||+|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 367888888887654 4679999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
|+|+|++++||++++|++...|+|++||++|.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=7.8e-15 Score=187.93 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=94.4
Q ss_pred HHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001261 702 LRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 702 ~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
..+...|.... .+|++|||++|......++..|..... .+..+.-+++...|..+++.|+.+...||++|..+..|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 44555554433 467999999999999999999975422 12223334444567889999999989999999999999
Q ss_pred CCCCC--ccEEEEeCCCCC-H-----------------------------hHHHHHhcccCCCCCccEEEEEecCC--cc
Q 001261 778 LDVKE--LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFISEE--DA 823 (1112)
Q Consensus 778 lDi~~--v~~VI~~d~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~i~~~~~~--d~ 823 (1112)
||+|+ +.+||+..+|.. + ..+.|.+||+-|....--++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99998 588988776641 1 12258899999987554455566553 45
Q ss_pred CchHHHHHHHh
Q 001261 824 KYSPDLVKALE 834 (1112)
Q Consensus 824 ~~~~~i~~~l~ 834 (1112)
.+-..+.+.|.
T Consensus 898 ~Yg~~~l~sLP 908 (928)
T PRK08074 898 SYGKYFLESLP 908 (928)
T ss_pred hHHHHHHHhCC
Confidence 56667777664
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=2.1e-14 Score=173.20 Aligned_cols=279 Identities=18% Similarity=0.194 Sum_probs=178.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|. .|+++|..+--++. ..-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-+.++..+.
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 443 57777776655554 446889999999999999999866443 6678899999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-----HHHHHhcCCcccccCCceEEEeccchhhh-ccC-----
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVMDEADRMF-DMG----- 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~g----- 633 (1112)
..+|+.|.++.++....+.... -.|+|++||+..| .+.+..... ......+.|+||||+|.|+ |..
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEecccceeeccCCCccc
Confidence 9999999999887766554333 3599999999887 444433211 1235678899999999753 211
Q ss_pred ----------ChhHHHHHHHhcCC--------------CCcEE-------------------------------------
Q 001261 634 ----------FEPQITRIVQNIRP--------------DRQTV------------------------------------- 652 (1112)
Q Consensus 634 ----------f~~~i~~il~~~~~--------------~~q~i------------------------------------- 652 (1112)
+......+...+.. ..+.|
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11111122222211 11222
Q ss_pred -----------------------------------------------------------------------EEeccccHH
Q 001261 653 -----------------------------------------------------------------------LFSATFPRQ 661 (1112)
Q Consensus 653 -----------------------------------------------------------------------l~SAT~~~~ 661 (1112)
+||+|.-..
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 222222111
Q ss_pred HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 662 ~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
... ...+++-++...+...+........ ..+.....|+..++..+..... +.+|||-|.|++..+.|+..|...|++
T Consensus 388 ~~E-f~~iY~l~Vv~IPTnkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 388 EVE-FEKTYKLEVTVIPTNRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHH-HHHHhCCcEEEcCCCCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 111 1112222222221111111111111 1233446788888887777654 459999999999999999999999999
Q ss_pred eeeecCCC-CHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001261 741 CLSLHGAK-DQTDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 741 ~~~ihg~~-~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
+.+++..- ....-..++.. .|. -.|-|||++|+||.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999863 32333334432 454 46999999999999974
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=3.3e-14 Score=170.99 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=77.6
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc----CCccEEEecCcccccCCC--------
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS----NVCNLLIATSVAARGLDV-------- 780 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~----g~~~VLVaT~v~~~GlDi-------- 780 (1112)
..|.+||.+.|...+..++..|...--..+.+.|..+ .+..+++.|+. |...||++|+.+..||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4689999999999999999999654223345666543 34567888886 478999999999999999
Q ss_pred CC--ccEEEEeCCCCC-------------------------HhHHHHHhcccCCCCCc--cEEEEEecCC
Q 001261 781 KE--LELVINFDAPNH-------------------------YEDYVHRVGRTGRAGRK--GCAITFISEE 821 (1112)
Q Consensus 781 ~~--v~~VI~~d~p~s-------------------------~~~y~QriGR~gR~G~~--g~~i~~~~~~ 821 (1112)
|+ +++||+..+|.. ...+.|-+||.-|.... --+++++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 999999777631 12335888999997654 2344444443
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.2e-15 Score=171.35 Aligned_cols=265 Identities=22% Similarity=0.269 Sum_probs=179.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+-++-+|||.||||.-++ +++.. ...+++..|.|-||..+++.+.. .|+.|-+++|.......-
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~--------aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS--------AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh--------hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCC
Confidence 446668999999997654 33332 34568999999999999888776 478887777755333221
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC-CcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~-~q~il~SAT~~~~~~ 663 (1112)
. ...+..+-||.+++ .--..+.+.||||++.|-|...+..+.+.+--+..+ .++.+= +.+.
T Consensus 256 ~--~~~a~hvScTVEM~-----------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvl 317 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMV-----------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVL 317 (700)
T ss_pred C--CCcccceEEEEEEe-----------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHH
Confidence 1 12257788887754 112357899999999999887777777655433221 222211 1233
Q ss_pred HHHHHhcC---CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 664 ILARKVLN---KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 664 ~l~~~~~~---~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
.+.+.++. +.+.+.. +.-..+-.-...++.-|... ..|.+|| |-++..+-.+...+.+.|..
T Consensus 318 dlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCc
Confidence 34444432 2222221 11111111112344445443 3455544 55788888888999888766
Q ss_pred -eeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCCC---------CCHhHHHHHhcccCCC
Q 001261 741 -CLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAP---------NHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 741 -~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p---------~s~~~y~QriGR~gR~ 808 (1112)
|++|+|++|++.|..--..|.+ +.++||||||++++|||+ +|+.||+|++- .+..+..|..|||||.
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf 461 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRF 461 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccc
Confidence 9999999999999999999986 899999999999999999 89999998874 3577889999999998
Q ss_pred CC---ccEEEEEec
Q 001261 809 GR---KGCAITFIS 819 (1112)
Q Consensus 809 G~---~g~~i~~~~ 819 (1112)
|. .|.+.+|..
T Consensus 462 ~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 462 GSKYPQGEVTTLHS 475 (700)
T ss_pred ccCCcCceEEEeeH
Confidence 74 476666664
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=4.8e-16 Score=180.60 Aligned_cols=335 Identities=19% Similarity=0.264 Sum_probs=193.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 543 (1112)
.|..+.. ..+...|.-..-.+|+|+|++||...+.| ...=+++.+|+|||+..|-. .+.+. ..++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala---------~~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALA---------AARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHh---------hhhe
Confidence 4554433 33334444445568999999999999865 23456788999999876543 33332 2578
Q ss_pred EEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-------------------HHHH-HHH-----hcCCeEEEeCc
Q 001261 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV-------------------AQQI-SEL-----KRGTEIVVCTP 598 (1112)
Q Consensus 544 LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~-------------------~~~~-~~l-----~~~~~IvV~Tp 598 (1112)
|+|||+..|..|...++..-. .+.++...+++.... ...+ ..+ ..+--||++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 999999999999888776532 345555544443211 1111 111 12457999999
Q ss_pred hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC-----CCcEEEEeccccHH---H--------
Q 001261 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-----DRQTVLFSATFPRQ---V-------- 662 (1112)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~-----~~q~il~SAT~~~~---~-------- 662 (1112)
..|..+-.... .-+..+++||+|||||.........-..-+..+.. ....+.|+||+--- .
T Consensus 289 QSl~~i~eAQe---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 289 QSLPRIKEAQE---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred cchHHHHHHHH---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 99877665433 35778899999999985321111111111111111 12346788885211 0
Q ss_pred ----------------------HHHHHHhcCCCeEEEEcC-cccccCCccEEEEeccc-------chhHHHHHHHHHhhh
Q 001261 663 ----------------------EILARKVLNKPVEIQVGG-RSVVNKDITQLVEVRPE-------SDRFLRLLELLGEWY 712 (1112)
Q Consensus 663 ----------------------~~l~~~~~~~p~~i~i~~-~~~~~~~i~q~~~~~~~-------~~k~~~ll~~l~~~~ 712 (1112)
+...+.++.+.-.+.+.- ..+....+. .....+. ..++.-...-|....
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~-~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQ-SVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhh-hhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 111222233321111110 111111111 1111111 111111111111110
Q ss_pred --------------cCCeEEEEeCCHHHHHHHHHHHHh-------------cC--CCeeeecCCCCHHHHHHHHH---Hh
Q 001261 713 --------------EKGKILIFVHSQEKCDALFRDLLK-------------HG--YPCLSLHGAKDQTDRESTIS---DF 760 (1112)
Q Consensus 713 --------------~~~~vLIF~~s~~~~~~l~~~L~~-------------~g--~~~~~ihg~~~~~~R~~~~~---~F 760 (1112)
+..+.|-||.++++...++..+.. .+ +.|-.+.|.|...+|...+. .|
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 012578899888777666555432 13 34556678999999865544 34
Q ss_pred hcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--CC-ccEEEEEe
Q 001261 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GR-KGCAITFI 818 (1112)
Q Consensus 761 ~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G~-~g~~i~~~ 818 (1112)
....++||---..++.|+|||.++.||+|++-+++.+.+|.+||+.|- |+ -|+.|+-+
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 567789998889999999999999999999999999999999999994 32 25555533
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.62 E-value=1.3e-15 Score=135.38 Aligned_cols=78 Identities=35% Similarity=0.623 Sum_probs=75.5
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 732 ~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
++|...++.+..+||+++..+|..+++.|.+|...|||||+++++|||+|.+++||+|++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=5e-15 Score=176.17 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=200.1
Q ss_pred CChHHHHHHHHHHHc---C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMS---G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~---g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++.+||...+.++.+ + -+.|+..+||.|||++.+..+ .+++... ...||. |||||+-.|.+ |..+|..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi-tYLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI-TYLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH-HHHHHHc---ccCCCe-EEeccccccCC-chhhccccc
Confidence 667899999988763 2 367888999999998754433 3444321 234676 88999999965 667777775
Q ss_pred hhcCceEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
.. +. ..+|-|+..... -.......+|+++|+..++.-- .+..--++.|+||||.|+|.+. ...+...
T Consensus 468 PS--v~-~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk-----~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~ 537 (1157)
T KOG0386|consen 468 PS--VQ-KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDK-----ALLSKISWKYMIIDEGHRMKNA--ICKLTDT 537 (1157)
T ss_pred cc--ee-eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCH-----HHHhccCCcceeecccccccch--hhHHHHH
Confidence 43 22 234445432111 1112245799999999775411 1112224679999999998542 1222222
Q ss_pred HHhcCCCCcEEEEecccc--------------------------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFP-------------------------------------------------------------- 659 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-------------------------------------------------------------- 659 (1112)
+........-+++|+|+-
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 221111222233333321
Q ss_pred -------------HHHHH------------------------------------------HHHHhcCCCeEEE-EcCccc
Q 001261 660 -------------RQVEI------------------------------------------LARKVLNKPVEIQ-VGGRSV 683 (1112)
Q Consensus 660 -------------~~~~~------------------------------------------l~~~~~~~p~~i~-i~~~~~ 683 (1112)
..++. ..+++|+.|..+. +..
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~--- 694 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN--- 694 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc---
Confidence 00000 1111112221100 000
Q ss_pred ccCCccEEE---EecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHH
Q 001261 684 VNKDITQLV---EVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759 (1112)
Q Consensus 684 ~~~~i~q~~---~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~ 759 (1112)
.+...+ .+.-...|+..|-.+|-++. .+++||+||......+.+..+|.-.++....+.|.....+|-..+..
T Consensus 695 ---~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 695 ---SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred ---ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 000000 11112345544444444433 35699999999999999999999999999999999999999999999
Q ss_pred hhcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 760 FKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 760 F~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
|..-. +.+|++|...+.|||+..+++||+||..|++....|+--|+.|.|+...+.+|....-..+
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 98543 5678899999999999999999999999999999999999999999888777765443333
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=3.2e-14 Score=140.89 Aligned_cols=144 Identities=38% Similarity=0.568 Sum_probs=111.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+.+++.++||+|||++++..+...+.. +..+.+||++|+..|+.|+...+..+... ++.+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 368999999999999998888877554 23568999999999999999998887765 67777777777666665
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.......+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5556778999999999987775432 2345688999999999877655444333444556778899999996
No 148
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.55 E-value=2.3e-13 Score=155.65 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccc
Q 001261 699 DRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAAR 776 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~ 776 (1112)
.|+..|-.+|..... +.++|+|+.....++.+..+|...+|..+.+.|.....+|..++.+|+... +-+|++|.+.+-
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 344455555555443 459999999999999999999999999999999999999999999999765 456889999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEEEecC
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISE 820 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~~~~~ 820 (1112)
|||+..+++||+|+..|++..-.|.+.|+.|-|+.-. +|.|++.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999998654 5556654
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.54 E-value=6.8e-13 Score=158.40 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=93.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDA 791 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~ 791 (1112)
+.++|||+......+.|..+|..+||-.+.|.|....++|...++.|.... +++|++|-..+.|||+.++++||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 358999999999999999999999999999999999999999999999664 577899999999999999999999999
Q ss_pred CCCHhHHHHHhcccCCCCCcc--EEEEEecCC
Q 001261 792 PNHYEDYVHRVGRTGRAGRKG--CAITFISEE 821 (1112)
Q Consensus 792 p~s~~~y~QriGR~gR~G~~g--~~i~~~~~~ 821 (1112)
.|++.---|.--|+.|.|+.- ..|.|++..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999876666666666666544 455666654
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.52 E-value=3.5e-12 Score=158.76 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=86.1
Q ss_pred HHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhh----cCCccEEEecCcccc
Q 001261 703 RLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFK----SNVCNLLIATSVAAR 776 (1112)
Q Consensus 703 ~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~----~g~~~VLVaT~v~~~ 776 (1112)
.+...|.... ..+.+|||++|....+.++..|... ++. +.++|.. .+..++..|+ .|...||++|..+..
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 4444443322 3456999999999999999998743 333 4556643 4667786666 477889999999999
Q ss_pred cCCCCC--ccEEEEeCCCC----CHh--------------------------HHHHHhcccCCCCCccEEEEEecCC--c
Q 001261 777 GLDVKE--LELVINFDAPN----HYE--------------------------DYVHRVGRTGRAGRKGCAITFISEE--D 822 (1112)
Q Consensus 777 GlDi~~--v~~VI~~d~p~----s~~--------------------------~y~QriGR~gR~G~~g~~i~~~~~~--d 822 (1112)
|||+|+ +.+||+..+|. ++. .+.|.+||.-|....--+++++++. .
T Consensus 598 GVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~ 677 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLT 677 (697)
T ss_pred cccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccc
Confidence 999998 88999977764 211 2248899999986543345555543 3
Q ss_pred cCchHHHHHHH
Q 001261 823 AKYSPDLVKAL 833 (1112)
Q Consensus 823 ~~~~~~i~~~l 833 (1112)
..+-..+++.|
T Consensus 678 ~~Yg~~~l~sL 688 (697)
T PRK11747 678 KRYGKRLLDAL 688 (697)
T ss_pred hhHHHHHHHhC
Confidence 33444555554
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=3e-12 Score=160.68 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=61.9
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|..++|.|.+.+..+. .+..+|+.+|||+|||++.|.|+|..+...+ ..+++++++.|..-..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 567778999998877655 6889999999999999999999998766432 3468899999998889999998
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 885
No 152
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=6.7e-14 Score=146.11 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
+|+++|.+++..+.. .+.+++.++||||||.+++..+..... .+||+||+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 578999999999884 688999999999999988866665532 68999999999999999997
Q ss_pred HHhhhcCceEEE-----------EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC--------cccccCCceEEE
Q 001261 562 KFAKVMGVRCVP-----------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------KITNLRRVTYLV 622 (1112)
Q Consensus 562 ~~~~~~~i~~~~-----------~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~--------~~~~l~~i~~vV 622 (1112)
.+.......... ...................|+++|...|......... .......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111111 0111111111222234578999999999877654211 112345678999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
+||||++.... .+..++. .+...+|+||||+++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999876432 1445555 456679999999863
No 153
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=4.5e-13 Score=154.20 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh--cCCcc-EEEecC
Q 001261 698 SDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK--SNVCN-LLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~--~g~~~-VLVaT~ 772 (1112)
.-|+..++..+...+ ...+++|...-......+...|...|+....+||.....+|..+++.|. +|... .||+-.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 335555555555442 3457777777777778888999999999999999999999999999997 44344 456667
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
..+.|||+-+.+++|.+|+-|++.---|.+.|+.|.|++..+++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 88899999999999999999999999999999999998876655
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.51 E-value=1.5e-12 Score=158.88 Aligned_cols=270 Identities=12% Similarity=0.148 Sum_probs=166.8
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hh
Q 001261 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~ 588 (1112)
-+|||||.+|+-.+-..+.. |.++|||+|...|+.|+...|+..+. +..++.++++.+..+.... +.
T Consensus 168 ~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 36999999998877666543 67899999999999999998887653 2567788888877655433 33
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHH
Q 001261 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 589 ~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.| ..|||||-..+ +..+.++++|||||-|.-. ..+ ...+... ++.....+..+|+.|||++-..
T Consensus 238 ~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 34 68999996643 3578899999999999432 111 2223332 2334446778999999997655
Q ss_pred HHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-c--------h----hHHHHHHHHHhhhcCCeEEEEeCCHHHHHH
Q 001261 663 EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-S--------D----RFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 663 ~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~--------~----k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~ 729 (1112)
...+....-.. +..... ......-. +.+.+. . . --..++..|.+....|++|||+|.+..+-.
T Consensus 308 ~~~~~~g~~~~--~~~~~~-~~~~~~P~-v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~ 383 (665)
T PRK14873 308 QALVESGWAHD--LVAPRP-VVRARAPR-VRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPS 383 (665)
T ss_pred HHHHhcCccee--eccccc-cccCCCCe-EEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCe
Confidence 44433221111 111110 00111111 111110 0 0 113466677666666799999997655422
Q ss_pred -----------------------------------------------------------HHHHHHhc--CCCeeeecCCC
Q 001261 730 -----------------------------------------------------------LFRDLLKH--GYPCLSLHGAK 748 (1112)
Q Consensus 730 -----------------------------------------------------------l~~~L~~~--g~~~~~ihg~~ 748 (1112)
+.+.|... +.++..+
T Consensus 384 l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~---- 459 (665)
T PRK14873 384 LACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS---- 459 (665)
T ss_pred eEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE----
Confidence 22222221 1222222
Q ss_pred CHHHHHHHHHHhhcCCccEEEecC----cccccCCCCCccEEEEeCCC------C------CHhHHHHHhcccCCCCCcc
Q 001261 749 DQTDRESTISDFKSNVCNLLIATS----VAARGLDVKELELVINFDAP------N------HYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~----v~~~GlDi~~v~~VI~~d~p------~------s~~~y~QriGR~gR~G~~g 812 (1112)
+++.++..|. ++.+|||+|. +++ +++.+|+..|.. . .+..+.|-+||+||.+..|
T Consensus 460 ---d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G 530 (665)
T PRK14873 460 ---GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGG 530 (665)
T ss_pred ---ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCC
Confidence 2235778886 5899999998 665 367777766543 2 2445578889999999899
Q ss_pred EEEEEe
Q 001261 813 CAITFI 818 (1112)
Q Consensus 813 ~~i~~~ 818 (1112)
.+++..
T Consensus 531 ~V~iq~ 536 (665)
T PRK14873 531 QVVVVA 536 (665)
T ss_pred EEEEEe
Confidence 988764
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.50 E-value=1.1e-12 Score=160.69 Aligned_cols=313 Identities=23% Similarity=0.242 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHHc--------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMS--------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~--------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..-+.+|-.|+..+.. |--+|-.|.||||||++=.-.|+ .|.. ...|++..|..-.|.|..|.-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457899999988774 22255569999999987554443 3322 23466777777888888888777
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHH-------------------------------------------HHhc-------
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQIS-------------------------------------------ELKR------- 589 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~-------------------------------------------~l~~------- 589 (1112)
++.-+.--.-.+.+++||....+... .+..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77654333334555555533221110 0000
Q ss_pred -CCeEEEeCchHHHHHHHhcC--CcccccCC--ceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 590 -GTEIVVCTPGRMIDILCTSG--GKITNLRR--VTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 590 -~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~--i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
...|+|||+..++....... .....+-. -+.|||||+|..-.. ....+..++..+ .....+|+||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 14799999999987763222 11111111 357999999963211 122233333321 235679999999998764
Q ss_pred HH-HHH----------hcCC---CeEEE---EcCccccc--------------------------CCcc---EEEEeccc
Q 001261 664 IL-ARK----------VLNK---PVEIQ---VGGRSVVN--------------------------KDIT---QLVEVRPE 697 (1112)
Q Consensus 664 ~l-~~~----------~~~~---p~~i~---i~~~~~~~--------------------------~~i~---q~~~~~~~ 697 (1112)
.. ..- ..+. |+.|. +....... ..+. .++.+...
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 32 222 2222 22111 11100000 0011 11111111
Q ss_pred c----hhHHH----HHHHHHhhh-------c-CCe----EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHH
Q 001261 698 S----DRFLR----LLELLGEWY-------E-KGK----ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQT 751 (1112)
Q Consensus 698 ~----~k~~~----ll~~l~~~~-------~-~~~----vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~ 751 (1112)
. ..... +.+.+.... + .++ -||-++++..+..++..|... .+.+++||+..+..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 1 11112 222111111 1 122 378889999999998888764 34588999999888
Q ss_pred HHHHHHHHh----------------------hc----CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 752 DRESTISDF----------------------KS----NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 752 ~R~~~~~~F----------------------~~----g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.|..+.+.+ .+ +...|+|+|.|++.|+|++ .+++|- -|.++...+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcc
Confidence 887766543 12 4568999999999999994 555543 456688999999999
Q ss_pred CCCCC
Q 001261 806 GRAGR 810 (1112)
Q Consensus 806 gR~G~ 810 (1112)
.|.|.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99874
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=1e-11 Score=155.69 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=78.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCC--ccEEEEe
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKE--LELVINF 789 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~--v~~VI~~ 789 (1112)
++++|||++|...+..++..|..... -.+..+|..+. ..+++.|..+.- .|||+|..++.|||+++ +.+||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 56899999999999999999987654 24555665554 378888886655 89999999999999998 6888888
Q ss_pred CCCCC------------------------------HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 790 DAPNH------------------------------YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 790 d~p~s------------------------------~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
.+|.- +..+.|.+||+-|.-...-++++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77652 22346999999996544334445544
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.6e-12 Score=158.43 Aligned_cols=126 Identities=25% Similarity=0.314 Sum_probs=101.7
Q ss_pred cccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecC
Q 001261 695 RPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATS 772 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~ 772 (1112)
.....|+..++..+...... .+|||-|.|++..+.|+..|...|++.-+|+......+-. |+. ..|. -.|-|||+
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAe-IVA--~AG~~GaVTIATN 684 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAE-IVA--EAGQPGTVTIATN 684 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHH-HHH--hcCCCCcEEEecc
Confidence 34456888888888776654 4999999999999999999999999988888865533332 222 2343 46999999
Q ss_pred cccccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 773 VAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
+|+||.||. +=-+||--..+.|.-.-.|-.||+||-|.+|.+..|++-+|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999998 446788788899998999999999999999999999986654
No 158
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=3.3e-13 Score=163.23 Aligned_cols=312 Identities=18% Similarity=0.238 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001261 491 MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
.|+|.|.++.+... .++++.+|+|||||+++-++++. ......+++++|.-+.+.-++..|.+ |....|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 68999999998865 56788899999999999888875 12345789999999999887776654 555678
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-----ChhHHHHHHH
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FEPQITRIVQ 643 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-----f~~~i~~il~ 643 (1112)
+.++.+.|..+..- .+....+|+|+||..+-.+ . ..+.+++.|+||+|.+.+.. ..-.+..|-.
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHHHH-h-------hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 88888877665543 2333479999999998433 1 45678999999999876321 1112455555
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH----HHHHHHh-hhcCCeEE
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR----LLELLGE-WYEKGKIL 718 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~----ll~~l~~-~~~~~~vL 718 (1112)
.+-....++.+|..+.+. ..++...-...+.+.+..+..+...-.|.+........+.. .+..+.. ...+.+.+
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 666667788888776542 11211000111111111122111111122222222222222 2222322 23456899
Q ss_pred EEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 719 IFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
||+++++.|..++..|... .+++.+-|.+++..+..-+-..|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9999999998776655322 234444499999999999999999999999988766 77
Q ss_pred cCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 777 GLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 777 GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
|+-...--+||. ||- +-.+....|++|++.| .|.|+++.......++.
T Consensus 1443 ~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1443 GTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred cccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHH
Confidence 777655444442 433 3357889999999998 56788888776655443
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=3.7e-13 Score=120.34 Aligned_cols=81 Identities=40% Similarity=0.651 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~ 808 (1112)
.++..|...++.+..+||+++..+|..++..|..|...|||+|++++.|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 001261 809 G 809 (1112)
Q Consensus 809 G 809 (1112)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.39 E-value=1.2e-11 Score=145.48 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHH
Q 001261 700 RFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDREST 756 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~ 756 (1112)
|+..|+++|..... +.++|||..+....+.+..+|... |...+.|.|......|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 45556777766544 359999999999999988888542 4567889999999999999
Q ss_pred HHHhhcCC----ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 757 ISDFKSNV----CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 757 ~~~F~~g~----~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
...|.+-. ..+||+|-+.+-|||+-.++.||+||..|+|.--+|.|=|+.|.|+...||+|-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 99998543 358999999999999999999999999999999999999999999987777653
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.36 E-value=5e-11 Score=155.37 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=105.8
Q ss_pred hhHHHHHHHH-HhhhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC--CccEEEecC
Q 001261 699 DRFLRLLELL-GEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN--VCNLLIATS 772 (1112)
Q Consensus 699 ~k~~~ll~~l-~~~~~~~---~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g--~~~VLVaT~ 772 (1112)
.|...+..+| ......+ ++|||++.....+.+..+|...++.++.++|.++...|..++..|.++ ...+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5677777777 4444444 799999999999999999999999999999999999999999999986 456777888
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
+++.|||+...++||+||+.|++....|.+.|+.|.|++..+.++-.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 99999999999999999999999999999999999998876655433
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.29 E-value=2.1e-10 Score=137.82 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=178.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
.+|-+|+|||||.+.+.++-..+.. .+..+|+|+..+.|+.++...++.. ++.-...|...... .+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~-~i~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDY-IID- 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccc-ccc-
Confidence 4666999999998766555443322 3567999999999999988887763 22111122211111 000
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-------HHHHhcCCCCcEEEEecccc
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-------RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-------~il~~~~~~~q~il~SAT~~ 659 (1112)
....+-++++...|..+.. ..+.++++|||||+-..+..-|.+.+. .+...++....+|++-||+.
T Consensus 119 -~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 0124667777777755531 357789999999999766543332222 23345567788999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEEcCcccccCCccEEEEe------------c-----------------------ccchhHHH
Q 001261 660 RQVEILARKVLNK-PVEIQVGGRSVVNKDITQLVEV------------R-----------------------PESDRFLR 703 (1112)
Q Consensus 660 ~~~~~l~~~~~~~-p~~i~i~~~~~~~~~i~q~~~~------------~-----------------------~~~~k~~~ 703 (1112)
..+-.|+..+.+. ++.+.+.........-.+-+.+ . ...+....
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9888888877653 4444443211100000000000 0 00111122
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+-.++.....+.+|-||+.|...++.++......+..++.++|..+..+.. . =+.++|+|.|+++..||++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchh
Confidence 223333334456888999999999999999999999999999987766332 2 2468999999999999999753
Q ss_pred --cEEEEeCCC----CCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 784 --ELVINFDAP----NHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 784 --~~VI~~d~p----~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+-|+-|=-| .++.+..|++||+-.-. ....+++++.
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 444444222 23556899999996554 5566666654
No 163
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.25 E-value=2.8e-11 Score=142.36 Aligned_cols=311 Identities=20% Similarity=0.267 Sum_probs=189.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
...+.++..+.-+++-+.||+|||..+...+|..+..... +-..-+.+.-|++--+.-+.+.+.. .-+-.++-.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~---er~e~~g~t 457 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVAN---ERGEEVGET 457 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHH---hhHHhhccc
Confidence 3444555566677888999999999999999988876432 1122344555888777755544322 222222223
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh-hhccCChhHHHHHHHhcCCCCcEEE
Q 001261 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-MFDMGFEPQITRIVQNIRPDRQTVL 653 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-~~~~gf~~~i~~il~~~~~~~q~il 653 (1112)
+|....+..... ..---|.+||.|.++..+.. -+..+.++|+||.|. -.+..|.-.+..-+..+.++..+++
T Consensus 458 vgy~vRf~Sa~p-rpyg~i~fctvgvllr~~e~------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 458 CGYNVRFDSATP-RPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccccccc-ccccceeeeccchhhhhhhh------cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 333333222111 11136899999999988864 466789999999994 3334455555444444455555666
Q ss_pred EeccccHH--------------------HHHHHHHhcCCCeEEEEcCcccccCC-ccEE-----------E-Eec-----
Q 001261 654 FSATFPRQ--------------------VEILARKVLNKPVEIQVGGRSVVNKD-ITQL-----------V-EVR----- 695 (1112)
Q Consensus 654 ~SAT~~~~--------------------~~~l~~~~~~~p~~i~i~~~~~~~~~-i~q~-----------~-~~~----- 695 (1112)
+|||+..+ +..|....+..+.....+........ .... . .++
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 66665322 11122222211111111100000000 0000 0 000
Q ss_pred ----------ccchhHHHHHHHHHhhh----cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHH
Q 001261 696 ----------PESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 696 ----------~~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~ 754 (1112)
...+....|++.+.... -.+-|+||.+.-..+..|+..|..+ .+.++.+|+.+...+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 00111122333333322 2367999999999999999999765 47899999999999999
Q ss_pred HHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEE
Q 001261 755 STISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 755 ~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
++++....|..+||+.|+++...+.|.++.+||+.+. ..+....+||-||+||. ++|.|+.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 9999999999999999999999999999888886332 11345668999999986 4788877
Q ss_pred Eec
Q 001261 817 FIS 819 (1112)
Q Consensus 817 ~~~ 819 (1112)
+++
T Consensus 770 lcs 772 (1282)
T KOG0921|consen 770 LCS 772 (1282)
T ss_pred ccH
Confidence 664
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.17 E-value=6.4e-09 Score=132.98 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=173.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+..+|.--||||||++.+..+- .+... ...|.++|||-++.|-.|+..+|..+........ .-.+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999987554443 33332 3579999999999999999999999876443221 233344444
Q ss_pred HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
..|..+ ..|||+|-..|-..+....... .-..--+||+|||||. +++.....+-..+ ++...++||+|+--.-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~-~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELEL-LKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccc-cCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 445444 4899999999987775531111 1122237899999993 3444444444444 34779999999742211
Q ss_pred HH-HHHhcCCCeEEEEcCcccccCCccEEE-Ee------cccc--------------------h----------------
Q 001261 664 IL-ARKVLNKPVEIQVGGRSVVNKDITQLV-EV------RPES--------------------D---------------- 699 (1112)
Q Consensus 664 ~l-~~~~~~~p~~i~i~~~~~~~~~i~q~~-~~------~~~~--------------------~---------------- 699 (1112)
.- ....++..+....-........+...+ .. .... .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 122233332222111110000000000 00 0000 0
Q ss_pred -hHHH----HHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-----------C--------C----CeeeecCCCCH
Q 001261 700 -RFLR----LLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-----------G--------Y----PCLSLHGAKDQ 750 (1112)
Q Consensus 700 -k~~~----ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-----------g--------~----~~~~ihg~~~~ 750 (1112)
+... +...+.. .....++.+.|.+...|..+.+.+... + + .....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 0000 1111111 112357778787777555554443221 0 0 00000111 12
Q ss_pred HHHHHHHHHh--hcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--C--CccEEEEEecCCccC
Q 001261 751 TDRESTISDF--KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--G--RKGCAITFISEEDAK 824 (1112)
Q Consensus 751 ~~R~~~~~~F--~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G--~~g~~i~~~~~~d~~ 824 (1112)
.........| .....+|||.++++-+|.|.|.++++. +|-|--.-..+|.+-||.|. + ..|.++.|+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g----- 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG----- 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----
Confidence 2233344443 356789999999999999999999887 56667777899999999995 3 2366666665
Q ss_pred chHHHHHHHhh
Q 001261 825 YSPDLVKALEL 835 (1112)
Q Consensus 825 ~~~~i~~~l~~ 835 (1112)
....+.+++..
T Consensus 652 l~e~l~~Al~~ 662 (962)
T COG0610 652 LKEALKKALKL 662 (962)
T ss_pred hHHHHHHHHHH
Confidence 55566666654
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.16 E-value=1.9e-10 Score=130.09 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=94.1
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 493 IQAQALPVIM-------------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 493 iQ~~ai~~il-------------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
+|..++.+++ ..+.+|++.++|+|||++.+..+. .+...... ..-..+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5777877764 335788899999999987666554 33332110 011248999999 788999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
+.+++....+++....|...............+|+|+|+..+.............--.+.+|||||+|.+-+ ......
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccc
Confidence 999986555666655555412222222334579999999988711000000011113488999999999853 344555
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001261 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..+. ....+++|||+.
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 5555565 566889999963
No 166
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=99.13 E-value=8.7e-12 Score=134.07 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=77.7
Q ss_pred cCeEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCC-CCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIA-GPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~-~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
++..++.+|||.||.||+.+|.++++++|.+.||+.|.+||+|+++..++ ++++++||+||.|+|.+.|++||+.|+-+
T Consensus 91 ~~~~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~Ei~~~Ai~RIkgv 170 (531)
T KOG1960|consen 91 AAAAAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTAEITSKAIERIKGV 170 (531)
T ss_pred HHHHHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccHHHHHHHHhhCccc
Confidence 46778999999999999999999999999999999999999999999987 57899999999999999999999999966
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
+...+
T Consensus 171 ~~~~~ 175 (531)
T KOG1960|consen 171 FMQDV 175 (531)
T ss_pred eeecc
Confidence 65554
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.03 E-value=8.1e-09 Score=125.34 Aligned_cols=317 Identities=22% Similarity=0.263 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
|+=.|.|-.+.-...-|.-..||-|||+++.+|+.-..+. |..+.+|+..--||.--..++..++..+|+.+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 3334555555555667889999999999999998855433 55677888888999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-c--------cC---C-
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-D--------MG---F- 634 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~--------~g---f- 634 (1112)
.+...+.+..+.-.... |+|.++|...|- ++|..+- .....+..+.|.|+||+|-++ | .| .
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 99999997777655554 899999987661 2221110 000123457889999999653 1 11 1
Q ss_pred ---hhHHHHHHHhcCCC--------CcEEEEecc-cc--------------HHHH-------HH-HHH-hcCCC------
Q 001261 635 ---EPQITRIVQNIRPD--------RQTVLFSAT-FP--------------RQVE-------IL-ARK-VLNKP------ 673 (1112)
Q Consensus 635 ---~~~i~~il~~~~~~--------~q~il~SAT-~~--------------~~~~-------~l-~~~-~~~~p------ 673 (1112)
...+..++..+... ...|.|+-. +. ..+. .+ +.. +..+-
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 22223333222211 111111111 00 0000 00 000 00110
Q ss_pred ------------------------------------------------------------------------------eE
Q 001261 674 ------------------------------------------------------------------------------VE 675 (1112)
Q Consensus 674 ------------------------------------------------------------------------------~~ 675 (1112)
+.
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 00
Q ss_pred EEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH
Q 001261 676 IQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 676 i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~ 754 (1112)
+.+...+....+... ..+.....|+..++..+..... +.++||.+.+++..+.+...|.+.|++..++...-...+
T Consensus 391 ~iPTnrp~~R~D~~D-~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E-- 467 (822)
T COG0653 391 VIPTNRPIIRLDEPD-LVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE-- 467 (822)
T ss_pred eccCCCcccCCCCcc-ccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH--
Confidence 000001100000000 1122345688888887776664 459999999999999999999999999888877665333
Q ss_pred HHHHHhhcCC-ccEEEecCcccccCCCCCccE-----------EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 755 STISDFKSNV-CNLLIATSVAARGLDVKELEL-----------VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 755 ~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v~~-----------VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
.-+-.+ .|. --|-|||++|+||-||.--.. ||--.--.|----.|--||+||-|-+|.+-.|++-.|
T Consensus 468 A~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 468 AEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 323233 343 458899999999999854332 2211111222223488899999999998887776544
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.03 E-value=6.3e-10 Score=107.41 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
|.-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+++.++. .++++.....+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----
Confidence 4456778899999998766666655443 367899999999999877766543 344443221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CCCCcEEEEeccccHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~~q~il~SAT~~~~ 661 (1112)
....+.-|-|+|++.+..++.. . ..+.++++||+||||-+-... . .....+..+ .....+|++|||+|..
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCCHHH-H-hhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 1235567889999999888765 3 346789999999999632111 0 111122222 1235799999999865
Q ss_pred H
Q 001261 662 V 662 (1112)
Q Consensus 662 ~ 662 (1112)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.93 E-value=1.1e-08 Score=114.34 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.93 E-value=1.1e-08 Score=114.34 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.83 E-value=9e-08 Score=104.17 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=98.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|=|++.+.-||..=+.++..|+
T Consensus 74 ~g-~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LG-LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cC-CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 44 478899999987777776 999999999999998888776554 6678899999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---cccccCCceEEEeccchhhh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~ 630 (1112)
..+|+.+.+++++.+......... ++|+++|...|. ++|..+-. .......+.++||||+|.|+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988655433333 789999999875 34443211 11114678899999999654
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.72 E-value=7.6e-07 Score=103.98 Aligned_cols=108 Identities=27% Similarity=0.297 Sum_probs=90.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC------------------CCeeeecCCCCHHHHHHHHHHhhcCC---ccEEEecCc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHG------------------YPCLSLHGAKDQTDRESTISDFKSNV---CNLLIATSV 773 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g------------------~~~~~ihg~~~~~~R~~~~~~F~~g~---~~VLVaT~v 773 (1112)
.++|||.......+.+...|.+.. .+.+-+.|..+..+|.+.|..|.+-- --+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 378999999999999999887752 23457789999999999999998532 257889999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
..-|||+-..+.+|+|++.|++.--.|.+-|+-|.|++..||++-.--|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999999999888999999999999887777644333
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.51 E-value=8.8e-07 Score=110.34 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=56.9
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-----CC----ccE-EEEEecCCccCchHHHHHHH
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-----GR----KGC-AITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-----G~----~g~-~i~~~~~~d~~~~~~i~~~l 833 (1112)
..++|++-+++..|.|.|++-++..+.-..|...-.|.+||..|. |. ... -.++++.....++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999998888888889999999984 21 112 22345566777888888877
Q ss_pred hhc
Q 001261 834 ELS 836 (1112)
Q Consensus 834 ~~~ 836 (1112)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.30 E-value=9.1e-06 Score=101.65 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=47.0
Q ss_pred CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 590 ~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...|+++||..|..-|..+ ..++..|+.|||||||++....-..-+..++...++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 3579999999986655443 36889999999999999865444445555555555555567777764
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.21 E-value=4.5e-07 Score=110.15 Aligned_cols=255 Identities=22% Similarity=0.265 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 491 MPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 491 t~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|+|.+.+-.+. ...++++.+|||+|||++|.+.++..+...+ +.++++++|-.+|+..-.+.+......-|+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCc
Confidence 356666554443 2456888899999999999999998876643 578999999999998777777665444488
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc----
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI---- 645 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~---- 645 (1112)
+++-+.|..... ...+ ..++|+|+||.....+...+ ....-+.+++++|+||.|.+.+ +..+.+..|....
T Consensus 1003 k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw-~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSW-QTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred eeEeccCccCCC--hhhe-ecCceEEcccccccCccccc-cchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 899888877554 1222 34799999999987776543 3334578899999999998654 4444444332222
Q ss_pred ---CCCCcEEEEeccccHHHHHHHHHhcCCC------------eEEEEcCcccccCCccEEEEecccchhHHHHHHHHHh
Q 001261 646 ---RPDRQTVLFSATFPRQVEILARKVLNKP------------VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 646 ---~~~~q~il~SAT~~~~~~~l~~~~~~~p------------~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
.+..+.+++|--+ .....++.++...+ ..+.+.+.+. ++ .+.-...........+..
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~------~~-~cprm~smnkpa~qaik~ 1149 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG------QH-YCPRMMSMNKPAFQAIKT 1149 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCcCCCCcccccCCceEeecCCCc------hh-cchhhhhcccHHHHHHhc
Confidence 2233444444332 12233333322222 2222221110 01 111111223345566666
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001261 711 WYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
..+..++|||+.+.......+..|.. ..-+..+++- +..+-+.++....+...+
T Consensus 1150 ~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1150 HSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCCceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 66778999999987765544444432 2223333433 355556666666555433
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.18 E-value=7.8e-06 Score=100.02 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=91.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcccccCCCCCccEEEEeCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVAARGLDVKELELVINFDAP 792 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~~~GlDi~~v~~VI~~d~p 792 (1112)
.++|||+.-...+..++..|...++....+.|.|....|...+..|..+. .. .|++..+...||++..+.+||..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999999999988999999999999999999999999554 23 45677888899999999999999999
Q ss_pred CCHhHHHHHhcccCCCCCccEEEE
Q 001261 793 NHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
|++..--|.+-|+.|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998765544
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.18 E-value=0.0001 Score=88.73 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--CCccE-----------EEEEecCCccCchHHH
Q 001261 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GRKGC-----------AITFISEEDAKYSPDL 829 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G~~g~-----------~i~~~~~~d~~~~~~i 829 (1112)
...++|.+--++-.|.|-|+|-.++-+....|...=.|.+||.-|. ...|. -.+|+...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999983 22222 2335566677777777
Q ss_pred HHHHhhc
Q 001261 830 VKALELS 836 (1112)
Q Consensus 830 ~~~l~~~ 836 (1112)
++-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766543
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.07 E-value=2.8e-05 Score=84.24 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcC-CCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 490 PMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQ-PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~-~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+.+.|..||..++.... .+|.||.|+|||.+.. .++..+... .......+..+||++||...+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56899999999999998 9999999999996433 344444110 001123477899999999999988887777
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.04 E-value=8.9e-06 Score=85.21 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-------HHHH
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-------HSDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-------~~~~ 560 (1112)
...+..|..++.+++...-+++.|+.|||||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456789999999999888888999999999999999999888762 234566766766431111 0111
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
.-++.++--....+++.. .+..+.....|-+.++..+ . | ..|+ -++||||||+.+. ..++..
T Consensus 77 ~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i----R---G--rt~~-~~~iIvDEaQN~t----~~~~k~ 138 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI----R---G--RTFD-NAFIIVDEAQNLT----PEELKM 138 (205)
T ss_dssp -TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG----T---T----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh----c---C--cccc-ceEEEEecccCCC----HHHHHH
Confidence 111110000000000111 1222333455666665533 1 1 2333 3899999999864 567888
Q ss_pred HHHhcCCCCcEEEEecc
Q 001261 641 IVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT 657 (1112)
++..+..+.++|++.-.
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 88888888888776554
No 180
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.00 E-value=0.0015 Score=74.53 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=82.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHHHHHHHHHHhh----cCCccEE--EecCcccccCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQTDRESTISDFK----SNVCNLL--IATSVAARGLDV 780 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~~R~~~~~~F~----~g~~~VL--VaT~v~~~GlDi 780 (1112)
++.+++|+++.-..+.+.......|+ +.+.| +.-+..+-..++..+. +|.-.|| ||-.-.+.|+|+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 35688899998877777666555432 33333 2222222233444333 5655566 566788899999
Q ss_pred CCcc--EEEEeCCCCCHh---------------------HH---------HHHhcccCCCCCccEEEEEe-cCC----cc
Q 001261 781 KELE--LVINFDAPNHYE---------------------DY---------VHRVGRTGRAGRKGCAITFI-SEE----DA 823 (1112)
Q Consensus 781 ~~v~--~VI~~d~p~s~~---------------------~y---------~QriGR~gR~G~~g~~i~~~-~~~----d~ 823 (1112)
.+-- .||++++|.-.. +| .|.+||+-|. +.-+.+.++ ++. |.
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDkRf~R~dK 687 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADKRFSRGDK 687 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeehhhccccc
Confidence 9866 999999997422 11 2788999985 344444444 322 21
Q ss_pred --CchHHHHHHHhhccCCCChh-HHHHHHHHHHHHhhhhhc
Q 001261 824 --KYSPDLVKALELSEQVVPDD-LKALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 824 --~~~~~i~~~l~~~~~~vp~~-l~~~~~~~~~~~~~~~~~ 861 (1112)
+.-..|...+.....-+..+ -..++..|...+.+....
T Consensus 688 R~klp~wi~~~l~~~~~nlstd~a~~varrflR~maQp~~k 728 (755)
T KOG1131|consen 688 RSKLPKWIRNHLFDAKLNLSTDMANQVARRFLRLMAQPFDK 728 (755)
T ss_pred hhhhhHHHHhhhhhhccCCCcchhHHHHHHHHHHhcCCCCc
Confidence 12223444444333333322 245666677776665543
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.98 E-value=4.1e-05 Score=83.70 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=106.5
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 470 ~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il----------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
-.+.|+..++.. ..++..|.+++-... .....++-..||.||.-+..-.|+.++...
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345777766542 346788888876654 223466667899999987666677766542
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCccccc----
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNL---- 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l---- 615 (1112)
..++|.|..+..|.......+..+... .+.+..+..-. .. ....-...||++|+..|+...........-|
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 235899999999999888888876543 33333332210 00 0011234699999998877653221111111
Q ss_pred -----CCceEEEeccchhhhccCCh--------hHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 616 -----RRVTYLVMDEADRMFDMGFE--------PQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 -----~~i~~vViDEah~~~~~gf~--------~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
+.=.+||+||||.+.+..-. ..+..+-..+ |+..+|.+|||.-....
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 12258999999998765321 2333333445 45569999999754433
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.89 E-value=4e-05 Score=80.87 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
++++-|..++..++... -+++.|+.|+|||.+ +..+...+.. .+..+++++||...+..+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~------- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK------- 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh-------
Confidence 36789999999997554 466779999999975 4445555544 357899999998887764443
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc----cccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI----TNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~----~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
.++.+ .|-..+ +....... ..+...++||||||-.+. ...+..++
T Consensus 66 ~~~~a------------------------~Ti~~~---l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 66 TGIEA------------------------QTIHSF---LYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp HTS-E------------------------EEHHHH---TTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred hCcch------------------------hhHHHH---HhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 12222 221111 11111000 014566799999999764 45667777
Q ss_pred HhcCC-CCcEEEEeccc
Q 001261 643 QNIRP-DRQTVLFSATF 658 (1112)
Q Consensus 643 ~~~~~-~~q~il~SAT~ 658 (1112)
..+.. +.++|++.-+.
T Consensus 115 ~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHS-T-T-EEEEEE-TT
T ss_pred HHHHhcCCEEEEECCcc
Confidence 77766 56777776653
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.88 E-value=0.0006 Score=84.54 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..+.+.|..|+..++.. ..+||.||+|+|||.+....+. ++.. .|+++||++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999877 5677889999999976444333 3332 256899999999998888777665
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.85 E-value=0.00019 Score=75.92 Aligned_cols=154 Identities=20% Similarity=0.336 Sum_probs=96.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~---g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.....|..++=.+. .+ --.++.|.+.+..+++ |.+.+.+.-||.|||.+ ++||+..+..+ ....+.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SN-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH-cC-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEE
Confidence 5666666666553332 22 3578999999999885 57899999999999976 77888776653 235677
Q ss_pred EEccchhHHHHHHHHHHHHhh-hcCceEEEE--eCCCChH----HHH----HHHhcCCeEEEeCchHHHHHHHhcC----
Q 001261 545 IMAPTRELVQQIHSDIRKFAK-VMGVRCVPV--YGGSGVA----QQI----SELKRGTEIVVCTPGRMIDILCTSG---- 609 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~-~~~i~~~~~--~gg~~~~----~~~----~~l~~~~~IvV~Tp~~L~~~l~~~~---- 609 (1112)
++|| ..|..|.+..+...+. -++-.+..+ .-..... ..+ ......-.|+++||+.++.+....-
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 8888 5799999988876443 334333332 2222211 112 2223345799999998866543221
Q ss_pred -Ccc----------cccCCceEEEeccchhhhc
Q 001261 610 -GKI----------TNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 610 -~~~----------~~l~~i~~vViDEah~~~~ 631 (1112)
+.. ..|...+.=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 0133455678999997765
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.84 E-value=0.00024 Score=76.57 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=82.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH----------
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ---------- 554 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~---------- 554 (1112)
.++...+..|..++.++..+.-+++.|++|+|||+.++..++..+... .-.+++|.=|+.....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567889999999999988888899999999998887777665442 1223444446543211
Q ss_pred -HHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh--cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 555 -QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK--RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 555 -Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~--~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
-+.-.+..+...+.. +.|. ..+..+. ....|.|+... ++.. ..|. -++||||||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRG-----rtl~-~~~vIvDEaqn~~- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRG-----RTFE-NAVVILDEAQNVT- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcC-----Cccc-CCEEEEechhcCC-
Confidence 111112222111111 1111 1122221 12345555533 2221 2333 3799999999864
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEec
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
..++..++..+..+.++|++.-
T Consensus 190 ---~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 ---AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred ---HHHHHHHHhhcCCCCEEEEeCC
Confidence 4678888888887777766543
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.82 E-value=5.4e-05 Score=77.77 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecC--cccccCCCCC--ccEEE
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VAARGLDVKE--LELVI 787 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~--v~~~GlDi~~--v~~VI 787 (1112)
+|.+|||++|...++.+...|...+. .+.++.. .......+++.|+.+...||+|+. .+..|||+++ +.+||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 58999999999999999999976531 1122222 245678899999999999999998 9999999997 88899
Q ss_pred EeCCCCC----Hh--------------------------HHHHHhcccCCCCCccEEEEEecC
Q 001261 788 NFDAPNH----YE--------------------------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 788 ~~d~p~s----~~--------------------------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
...+|.. +. ...|.+||+-|....-.+++|+++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888852 10 114889999998765445555543
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.75 E-value=0.00053 Score=80.26 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=64.9
Q ss_pred HHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 481 ~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+...++.++..-|..|+..++...-.||+||.|+|||.+.. .++.|+..+ ....+|+++|+...+.|+...|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 445577888899999999999999999999999999997644 444555443 2446899999999999888877
Q ss_pred HHHhhhcCceEEEE
Q 001261 561 RKFAKVMGVRCVPV 574 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~ 574 (1112)
.+ .|++++-+
T Consensus 475 h~----tgLKVvRl 484 (935)
T KOG1802|consen 475 HK----TGLKVVRL 484 (935)
T ss_pred Hh----cCceEeee
Confidence 66 45666644
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.62 E-value=0.00039 Score=85.08 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
.+.|..|+..++.++-+|+.|+.|+|||++. ..++..+..... ...++.+++++||--.|..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999753 333333332211 0113578999999988887777665543222210
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---cccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
. .+.....+-..|-.+|+........ ...+...+++||||||=++- ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444332211000 00123457899999998642 4567788888999
Q ss_pred CCcEEEEecc
Q 001261 648 DRQTVLFSAT 657 (1112)
Q Consensus 648 ~~q~il~SAT 657 (1112)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 9988887665
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.53 E-value=0.00026 Score=82.04 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=65.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+||.|..|||||++++-.+. .+.. ...+..+++||+...|...++..+.....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------------- 56 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN--------------------- 56 (352)
T ss_pred EEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc---------------------
Confidence 67789999999987554433 3311 12467789999999998877777665320
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-------ChhHHHHHHHh
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-------FEPQITRIVQN 644 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-------f~~~i~~il~~ 644 (1112)
.......+..+..++..+. ........+++|||||||+|...+ ...++..++..
T Consensus 57 -~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001223444444443332 011345678999999999998732 23455555554
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.52 E-value=0.00052 Score=84.13 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
..+.|..|+-..+..+-+||.|++|+|||++. ..++..+.... .+....+++++||.-.|..+.+.+......+++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999999999999999999999999753 23333332211 112356888899999998887777654433321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
. . .+......-..|-.+|+....... ....+.-.+++||||||-++ + ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 1 0 000001112233333322211100 00112335689999999864 2 566778888999
Q ss_pred CCCcEEEEecc
Q 001261 647 PDRQTVLFSAT 657 (1112)
Q Consensus 647 ~~~q~il~SAT 657 (1112)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99988888765
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.43 E-value=0.00026 Score=82.72 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.+.+-|..|+.+.++.++ .++.||+|+|||.+....+.+.+.. +.++||++||.+.+.-+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHH
Confidence 566889999999998876 4566999999998877766666554 57899999999888777664
No 192
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.003 Score=73.19 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=90.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
...++++|+||+|||++..-.+....... ...+..+++++ +.|.-+.. .+..++..+++.+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~------- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAI------- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEee-------
Confidence 35688899999999987654443322211 01234444444 44444442 3666666666654322
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCC-CcEEEEecccc
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPD-RQTVLFSATFP 659 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~-~q~il~SAT~~ 659 (1112)
.++..+...+. .+.++++||||++.++... .....+..++..+.+. .-++++|||..
T Consensus 240 --------------~~~~~l~~~L~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 240 --------------ESFKDLKEEIT-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------------CcHHHHHHHHH-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 23334444432 2456899999999987521 1223455556655544 35688999986
Q ss_pred HH-HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 660 RQ-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~~-~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
.. +...+..|...++. .-++.-.++..+.-.++.++... +-++..++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~yit~Gq 349 (388)
T PRK12723 299 TSDVKEIFHQFSPFSYK-------------TVIFTKLDETTCVGNLISLIYEM--RKEVSYVTDGQ 349 (388)
T ss_pred HHHHHHHHHHhcCCCCC-------------EEEEEeccCCCcchHHHHHHHHH--CCCEEEEeCCC
Confidence 43 44444444321110 01123344555666666666543 23454455444
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.0011 Score=83.50 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++-|..|+..+..++-+++.|..|+|||++ +..++..+... +....+++++||-..|..+.+. .
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------c
Confidence 468999999999999989999999999999974 33444443331 1114678889998877644322 2
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhc--CCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS--GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
|+.. .|..+|+.+.... .....+....++||||||+++. ...+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2211 1111111110000 0000122357899999999753 34567778888
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
+...++|++.-+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888888887665
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.0011 Score=76.96 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=71.3
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH-HHhhhcCceEEEEeCCCChHH----H
Q 001261 509 GVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR-KFAKVMGVRCVPVYGGSGVAQ----Q 583 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~-~~~~~~~i~~~~~~gg~~~~~----~ 583 (1112)
+.+.||||||+++...+|..... |.. ..|+.|..-....-....+. .+...+-+.-...++|..+.- .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gyr-~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GYR-NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------chh-hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 45789999999876666654332 222 34555554333332211111 111111111112223322110 1
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcc---cccCCce-EEEeccchhhhccC------------ChhHHHHHHHhcCC
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKI---TNLRRVT-YLVMDEADRMFDMG------------FEPQITRIVQNIRP 647 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~---~~l~~i~-~vViDEah~~~~~g------------f~~~i~~il~~~~~ 647 (1112)
+.....+..|+++|...|...+.+..... .+|.+.. +++-||||++-... -+..+..+-..-++
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 11223467899999998876665433222 2344444 45679999973211 11111111122245
Q ss_pred CCcEEEEeccccHH
Q 001261 648 DRQTVLFSATFPRQ 661 (1112)
Q Consensus 648 ~~q~il~SAT~~~~ 661 (1112)
+.-++.||||+|..
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 55678899999843
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.36 E-value=0.00081 Score=81.67 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|+|.|...+.-++ ...+.++.+|||+|||++.|-..|...
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~ 65 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQ 65 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHH
Confidence 57899987766655 567899999999999998776655443
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.23 E-value=0.0033 Score=66.19 Aligned_cols=170 Identities=19% Similarity=0.172 Sum_probs=93.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++||||+|||++..-.+...... +.++.+++ ..|.=|. ++++.++..+++.+.............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchhhHHHH
Confidence 6789999999998755544443322 33444544 3443333 667788888888776544333222111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
...+.. ...+++++|+||=+-+.. +......+..++..+.+..-++++|||......
T Consensus 73 -----------------~~~l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 73 -----------------REALEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -----------------HHHHHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -----------------HHHHHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 112211 122346788888876542 222355677777788777778999999876654
Q ss_pred HHHHHhcC-C-CeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 664 ILARKVLN-K-PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 664 ~l~~~~~~-~-p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
..+..+.. - +-.+ ++...++..+.-.++.++... +-++-.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~l--------------IlTKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 131 EQALAFYEAFGIDGL--------------ILTKLDETARLGALLSLAYES--GLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHSSTCEE--------------EEESTTSSSTTHHHHHHHHHH--TSEEEEEESSSS
T ss_pred HHHHHHhhcccCceE--------------EEEeecCCCCcccceeHHHHh--CCCeEEEECCCC
Confidence 34433332 1 1111 123345556666777776653 345555555443
No 197
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.15 E-value=0.0078 Score=68.65 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=95.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.++-+.++||||.|||++..-.+....+. .+....+||-+-|--.+. ++.++.++..+++.+..++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~------- 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY------- 267 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec-------
Confidence 47889999999999998655444444311 122345566665433322 3667788888887665444
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+|.-|...+ ..|.++++|.||=+-+-. |.....++..++....+..-.+++|||....
T Consensus 268 --------------~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 268 --------------SPKELAEAI-------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred --------------CHHHHHHHH-------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 444444444 245556666666665422 2223445555555555555678899997643
Q ss_pred -HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+......|-.-|+.- -++.-.++...+-.++.++... +-++..|.+.+.
T Consensus 327 dlkei~~~f~~~~i~~-------------~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~ 376 (407)
T COG1419 327 DLKEIIKQFSLFPIDG-------------LIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQR 376 (407)
T ss_pred HHHHHHHHhccCCcce-------------eEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCC
Confidence 455555554443211 1122234444455556655542 335555555544
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.012 Score=67.41 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+.++++|+||+|||+.....+.. +.. .+..++++. |.|.-+. ..+..++..+++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~-------~GkkVglI~aDt~RiaAv---EQLk~yae~lgipv~---------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG-------KKKTVGFITTDHSRIGTV---QQLQDYVKTIGFEVI---------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH-------cCCcEEEEecCCcchHHH---HHHHHHhhhcCCcEE----------
Confidence 56788999999999865544443 222 244454444 3342222 234444444444332
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEecccc-H
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP-R 660 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~-~ 660 (1112)
++.+|..|.+.+... ....++++|+||-+=+.... .....+..++....++.-++++|||.. .
T Consensus 301 -----------v~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -----------ecCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 234566665555321 11124788999988764421 123345555555556655677999765 4
Q ss_pred HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 661 QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 661 ~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
.+..++..|-..++.- -++.-.+...+.-.++.++... +-++..++..+
T Consensus 366 d~~~i~~~F~~~~idg-------------lI~TKLDET~k~G~iLni~~~~--~lPIsyit~GQ 414 (436)
T PRK11889 366 DMIEIITNFKDIHIDG-------------IVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 414 (436)
T ss_pred HHHHHHHHhcCCCCCE-------------EEEEcccCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 5566666654322110 1122334455556666666553 33555555443
No 199
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.014 Score=69.03 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=69.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHH-hcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l-~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.++.++++||||+|||++.+..+.... .. .+..+++|. |.+.-+. ..+..++..+++.+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------ 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------ 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------
Confidence 356788899999999986554444332 22 133444443 3333222 4455555545544322
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHH-hcCCCCcEEEEecc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQ-NIRPDRQTVLFSAT 657 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~-~~~~~~q~il~SAT 657 (1112)
+.++..|...+. .+..+++||||-+-+.. +......+..++. ...+..-.+++|||
T Consensus 284 ---------------~~~~~~l~~~l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 284 ---------------VYDPKELAKALE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ---------------cCCHHhHHHHHH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 234444444442 23457899999886532 1112334555555 22344557889998
Q ss_pred ccH-HHHHHHHHhc
Q 001261 658 FPR-QVEILARKVL 670 (1112)
Q Consensus 658 ~~~-~~~~l~~~~~ 670 (1112)
... .+..++..|-
T Consensus 342 ~~~~~l~~~~~~f~ 355 (424)
T PRK05703 342 TKYEDLKDIYKHFS 355 (424)
T ss_pred CCHHHHHHHHHHhC
Confidence 764 4455555543
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0023 Score=73.47 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=86.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|..++++||||+|||+.....+...+... +. .++.+++ +...-.--.+.+..|+..+++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~-~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~--------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----GA-SKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA--------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CC-CeEEEEe-cccccccHHHHHHHHHHHcCCceEe---------
Confidence 466788999999999987665554443321 11 2333333 2222111224556666666654433
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+.+++.+...+. .+.+.++|+||.+-+... ......+..+.....+...++++|||....
T Consensus 200 ------------~~~~~~l~~~l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 200 ------------VKDGGDLQLALA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred ------------cCCcccHHHHHH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 333433433332 345568888998875421 112222333222223344578899998554
Q ss_pred H-HHHHHHhcCC---CeEEEEcCcccccCCccE-EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 662 V-EILARKVLNK---PVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 662 ~-~~l~~~~~~~---p~~i~i~~~~~~~~~i~q-~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. ...+..|... |.... ..+.. ++...++..++-.++.++... +-++..+++.+
T Consensus 261 ~l~evi~~f~~~~~~p~~~~--------~~~~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq 318 (374)
T PRK14722 261 TLNEVVQAYRSAAGQPKAAL--------PDLAGCILTKLDEASNLGGVLDTVIRY--KLPVHYVSTGQ 318 (374)
T ss_pred HHHHHHHHHHHhhccccccc--------CCCCEEEEeccccCCCccHHHHHHHHH--CcCeEEEecCC
Confidence 3 4444444322 11000 01111 223344555666666666553 33555555444
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.11 E-value=0.0025 Score=78.15 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=88.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
|+.+.......+.+.+... -+..+...|.+|+-.++..+| .||.|-+|+|||+.... ++..|.. .|.
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCC
Confidence 4444444455566666663 223456899999999988776 67779999999975433 3333322 367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH-----------------HHHHhcCCeEEEeCchHHHHH
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ-----------------ISELKRGTEIVVCTPGRMIDI 604 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~-----------------~~~l~~~~~IvV~Tp~~L~~~ 604 (1112)
+||+.+=|...+..+.-.+.. +++.+.-+-.+.....+ +..+...+.||.||=-.+.+.
T Consensus 715 kVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhc----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 888888887665544333333 34443332222222222 233344578888885444333
Q ss_pred HHhcCCcccccCCceEEEeccchhhh
Q 001261 605 LCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 605 l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
| +..+.++|+|||||-.|+
T Consensus 791 l-------f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 791 L-------FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred h-------hhccccCEEEEccccccc
Confidence 3 456779999999999775
No 202
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.04 E-value=0.0035 Score=80.36 Aligned_cols=124 Identities=20% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+||..++.+.+ ++++|..|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 3689999999999998765 67789999999975 4444444332 36788999999766654321 1
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~- 645 (1112)
.|+.. .|..+|+.-... ....+...++||||||-.+. ...+..++...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~---~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~ 458 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQ---GRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAA 458 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcc---cccccccCcEEEEECcccCC----HHHHHHHHHhhh
Confidence 22211 121122110101 11245667899999999653 33455566544
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.-+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 556778887766
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.006 Score=69.43 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=76.3
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc-c-hh-HHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-T-RE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P-t-re-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
.-++++|++|+|||++....+ ..+.. .+..++++.. | |. ...| +..++..+++.+.....|....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eq----L~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQ----LEEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHH----HHHHHHHcCCceecccCCCCHH
Confidence 357778999999998544333 23332 2445555542 2 23 3334 3445555666654333232211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.. +.+.+.. .....+++||||.|.++. +..+...+..+...+.++.-+++++||...
T Consensus 209 ~v-----------------~~~ai~~-----~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 AV-----------------AYDAIEH-----AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HH-----------------HHHHHHH-----HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 11 1111111 112346799999999875 344667777787778888888999999876
Q ss_pred HHHHHHHHhc
Q 001261 661 QVEILARKVL 670 (1112)
Q Consensus 661 ~~~~l~~~~~ 670 (1112)
.....+..|.
T Consensus 267 d~~~~a~~f~ 276 (336)
T PRK14974 267 DAVEQAREFN 276 (336)
T ss_pred hHHHHHHHHH
Confidence 6655555554
No 204
>PF13245 AAA_19: Part of AAA domain
Probab=97.02 E-value=0.0024 Score=56.05 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=38.3
Q ss_pred HcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 502 MSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 502 l~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.+.. ++|.|+.|||||...+-.+...+.... .. +..+||++||+.++..+.+.+
T Consensus 7 l~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 7 LAGSPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 33444 556999999999765655555543211 12 668999999999999877766
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.01 E-value=0.0033 Score=61.47 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=13.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++-+++.|++|+|||.+.-..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568899999999997544333
No 206
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.0091 Score=65.92 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
++-.+.+++++|++|+|||..+...+ ..+.. .|..|+++ +..+|+.++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~-------~g~~v~f~-~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIG-LALIE-------NGWRVLFT-RTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHH-HHHHH-------cCCceeee-eHHHHHHHHHHHHhC-----------------
Confidence 45578899999999999996544333 23322 24445444 445565544221000
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCC-hhHHHHHHHhcCCCCcEEEEeccc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+...++. .+..+.+|||||.+.+....+ ...+..|+........+|+.|-..
T Consensus 156 ----------------~~~~~~l~----------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 156 ----------------LQLESAIA----------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----------------CcHHHHHH----------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 01111211 234578999999997543222 234566666554445667666665
Q ss_pred cHH
Q 001261 659 PRQ 661 (1112)
Q Consensus 659 ~~~ 661 (1112)
+..
T Consensus 210 ~~~ 212 (269)
T PRK08181 210 FGE 212 (269)
T ss_pred HHH
Confidence 554
No 207
>PRK06526 transposase; Provisional
Probab=96.99 E-value=0.0043 Score=68.12 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
..++..+.+++++||+|+|||..+...+..
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 345567789999999999999765544433
No 208
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.98 E-value=5.3e-05 Score=91.66 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh---cCCccEEEecCccc
Q 001261 700 RFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK---SNVCNLLIATSVAA 775 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~~ 775 (1112)
|+..|...+...... .+||||...+...+.|..++...+ ....+.|......|..++..|. ...+.+|++|...+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 455555555555443 499999999999999999998888 8889999999999999999998 33577899998776
Q ss_pred cc
Q 001261 776 RG 777 (1112)
Q Consensus 776 ~G 777 (1112)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 55
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.95 E-value=0.0017 Score=68.13 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc---hhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT---RELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt---reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
|.-.|+.|++|+|||+.++-.+.+... .+.+++|+-|. +.... .++..+|+.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~~------- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSREA------- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--------cCCeEEEEeccccccccCC-------cEecCCCCcccc-------
Confidence 344688999999999876655554432 25678888663 22111 112222221110
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+..+..++..+.. .-..+.+|||||+|.+. ..++..++..+.+....|++++-
T Consensus 60 ------------~~~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 ------------IPVSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ------------eEeCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344444444432 12357899999998642 23466666665544445555554
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.94 E-value=0.085 Score=68.46 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+|+..+.. ++-++++|.-|+|||++ +-++...+.. .|..++.++||--.|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e-------~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEK-------E 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH-------h
Confidence 4689999999998865 45678889999999975 4444444332 36788999999766654322 2
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
.|+....+ .+|+ +....+ ...|...++||||||-.+. ..++..++..+.
T Consensus 445 ~Gi~a~TI------------------------as~l--l~~~~~-~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~ 493 (1102)
T PRK13826 445 AGIQSRTL------------------------SSWE--LRWNQG-RDQLDNKTVFVLDEAGMVA----SRQMALFVEAVT 493 (1102)
T ss_pred hCCCeeeH------------------------HHHH--hhhccC-ccCCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 34433221 1111 000011 1245667899999999653 345556666664
Q ss_pred -CCCcEEEEecc
Q 001261 647 -PDRQTVLFSAT 657 (1112)
Q Consensus 647 -~~~q~il~SAT 657 (1112)
...++||+.-+
T Consensus 494 ~~garvVLVGD~ 505 (1102)
T PRK13826 494 RAGAKLVLVGDP 505 (1102)
T ss_pred hcCCEEEEECCH
Confidence 56788888766
No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.87 E-value=0.01 Score=75.14 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|..|+..++.+ +-++|+|+.|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 35889999999999875 5678889999999965 3334433332 26678999999776654432 1
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh-c
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN-I 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~-~ 645 (1112)
.|+... |-.+++..+.. ....+...++||||||-.+.. ..+..++.. .
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~---~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWAN---GRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAE 464 (744)
T ss_pred cCCcee------------------------eHHHHHhhhcc---CcccCCCCcEEEEECcccCCH----HHHHHHHHHHH
Confidence 233221 11111110111 112356789999999997542 234455553 3
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.-+
T Consensus 465 ~~~~kliLVGD~ 476 (744)
T TIGR02768 465 EAGAKVVLVGDP 476 (744)
T ss_pred hcCCEEEEECCh
Confidence 356677777644
No 212
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.80 E-value=0.015 Score=64.58 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred CCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH-------
Q 001261 485 LNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ------- 555 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q------- 555 (1112)
+|+..-...|.-|+.+++.-. -|.+.|+-|||||+.++.+.+..++.++. -.+++|.=|+..+...
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCc
Confidence 677777788999999998664 46677999999999999998888776532 2344444466544321
Q ss_pred ----HHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccC-------CceEEEec
Q 001261 556 ----IHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR-------RVTYLVMD 624 (1112)
Q Consensus 556 ----~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~-------~i~~vViD 624 (1112)
+.-+++.++..+ ..|.. .-=|+.+.|..++......+..|. .=.|||||
T Consensus 299 eEeKm~PWmq~i~DnL-----------------E~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 299 EEEKMGPWMQAIFDNL-----------------EVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred hhhhccchHHHHHhHH-----------------HHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 111222221111 11111 001112222222222211111111 12589999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccc----------cHHHHHHHHHhcCCCeE
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF----------PRQVEILARKVLNKPVE 675 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~----------~~~~~~l~~~~~~~p~~ 675 (1112)
||+.+. ..+++.|+.....+..+|++.--- .+.+..++.+|.+.|..
T Consensus 359 EaQNLT----pheikTiltR~G~GsKIVl~gd~aQiD~~yl~~~snGLtyvverfk~~~l~ 415 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGEGSKIVLTGDPAQIDTPYLDETSNGLTYVVEKFKGHPLS 415 (436)
T ss_pred hhhccC----HHHHHHHHHhccCCCEEEEcCCHHHcCCccccCCCccHHHHHHHhcCCCce
Confidence 999864 567889999998888887765431 23455566666666644
No 213
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.1 Score=62.15 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=80.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
.|..++++|+||+|||+.+...+...... +.+..+.++. +.+..+. ..+..+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 46678889999999998654443333222 1122344433 2343332 2333444334443221
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+.++..|...+. .+.++++||||.+-++.. ......+..+. ......-+|+++++..
T Consensus 413 --------------a~d~~~L~~aL~-------~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss 470 (559)
T PRK12727 413 --------------ADSAESLLDLLE-------RLRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAH 470 (559)
T ss_pred --------------cCcHHHHHHHHH-------HhccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCC
Confidence 123344444443 234578999999876421 11112222222 2234455778888865
Q ss_pred H-HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. .+..++..|...+.. .-++...++..++-.++.++... +-++..+++++
T Consensus 471 ~~Dl~eii~~f~~~~~~-------------gvILTKlDEt~~lG~aLsv~~~~--~LPI~yvt~GQ 521 (559)
T PRK12727 471 FSDLDEVVRRFAHAKPQ-------------GVVLTKLDETGRFGSALSVVVDH--QMPITWVTDGQ 521 (559)
T ss_pred hhHHHHHHHHHHhhCCe-------------EEEEecCcCccchhHHHHHHHHh--CCCEEEEeCCC
Confidence 3 444454444321110 01122234455566666666543 23555555544
No 214
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=96.60 E-value=0.0049 Score=58.98 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=53.1
Q ss_pred cchhhcccchhhhhHHhhhCCeEecccee--eCCCCC-----CC--CCCCceEEEEEeCC--HHHHHHHHHHHHHHHHHH
Q 001261 1025 NARWKVTHKETLGPISEWTGAAITTRGQY--FPPSRI-----AG--PGERKLYLFIEGPT--EQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~t~~~~~~~i~~~tg~~i~~kG~~--~~~~~~-----~~--~~~~~Lyl~ie~~~--~~~v~~A~~~i~~~~~e~ 1093 (1112)
.-+-.=..+.|+.+|++.|||.|.++|.- ...++. |. ..+-+||++|+|++ ..++++|+..|+.|+...
T Consensus 17 IG~IIGPgG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~~~ 96 (120)
T cd02395 17 VGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLKPA 96 (120)
T ss_pred eEEEECCCChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhccC
Confidence 34455578999999999999999999862 111111 11 13568999999999 999999999999999844
No 215
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.52 E-value=0.0064 Score=69.10 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+.... .....+|+|++|+..|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 46889998888 6778999999999999988777776665532 23457999999999999999988887654321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.. .........+..-..+.|+|-..+...+.........+ .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI-DPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS-HTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhc-cccceeecchh
Confidence 10 00001111222235678889887765443322111111 12356677776
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.51 E-value=0.11 Score=72.49 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+++-|.+|+..++.. +-+||.|..|+|||.+ +-.++..+.. .|..+++++||-..+..+.+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~------ 494 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKI------ 494 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHh------
Confidence 5789999999999875 5678889999999964 4444444332 3678999999987766554432
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~- 645 (1112)
++... .....+..+..+ ....|...|+ . ....|...++||||||-.+. ...+..++...
T Consensus 495 -g~~A~------Ti~~~l~~l~~~--~~~~tv~~fl---~----~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 495 -PRLAS------TFITWVKNLFND--DQDHTVQGLL---D----KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAE 554 (1960)
T ss_pred -cchhh------hHHHHHHhhccc--ccchhHHHhh---c----ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHh
Confidence 21110 111111111111 1122323332 1 11345667899999999653 44566677655
Q ss_pred CCCCcEEEEecc--ccH----HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEE
Q 001261 646 RPDRQTVLFSAT--FPR----QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKIL 718 (1112)
Q Consensus 646 ~~~~q~il~SAT--~~~----~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vL 718 (1112)
..+.++||+.-+ +|. .+..++... +-|.. .+.........+ .+.......++..+...+..... ...++
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~-~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTY-AWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEE-EeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 467889988776 221 333333332 22221 111110001111 12222233444455554444333 33689
Q ss_pred EEeCCHHHHHHHHHHHHh
Q 001261 719 IFVHSQEKCDALFRDLLK 736 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~ 736 (1112)
||..+..+...|...++.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888777766643
No 217
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.051 Score=62.12 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=18.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.++.++++||+|+|||+...-.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999865554443
No 218
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.45 E-value=0.0071 Score=66.24 Aligned_cols=79 Identities=14% Similarity=0.350 Sum_probs=60.0
Q ss_pred HHHHHhhcCCccEEEecCcccccCCCCC--------ccEEEEeCCCCCHhHHHHHhcccCCCCCc-cEEEEEecCC---c
Q 001261 755 STISDFKSNVCNLLIATSVAARGLDVKE--------LELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISEE---D 822 (1112)
Q Consensus 755 ~~~~~F~~g~~~VLVaT~v~~~GlDi~~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~~~~---d 822 (1112)
...+.|.+|...|+|.|+.++.||.+.. -.+-|.+.+||+....+|.+||+.|.|+. ...|.|+... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5567999999999999999999998763 45567789999999999999999999974 4456655432 3
Q ss_pred cCchHHHHHHH
Q 001261 823 AKYSPDLVKAL 833 (1112)
Q Consensus 823 ~~~~~~i~~~l 833 (1112)
..++..+.+.|
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 219
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.45 E-value=0.021 Score=56.69 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred eecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCC--ccEEEEeCCCCC----H--------------------
Q 001261 743 SLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKE--LELVINFDAPNH----Y-------------------- 795 (1112)
Q Consensus 743 ~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~--v~~VI~~d~p~s----~-------------------- 795 (1112)
++.-+....+...+++.|+... ..||++|.-++.|||+++ +.+||...+|.. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788999998654 379999988999999998 678888887641 1
Q ss_pred -------hHHHHHhcccCCCCCccEEEEEec
Q 001261 796 -------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 796 -------~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
....|.+||+-|....-.+++|++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 122488899999765433454554
No 220
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.44 E-value=0.0086 Score=69.68 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHH------HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 490 PMPIQAQALPVI------MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 490 pt~iQ~~ai~~i------l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+++-|..++..+ ..+..+++.|+-|+|||.. +-.+..... ..+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc------cccceEEEecchHHHHHhc
Confidence 567889888888 5778899999999999964 323322222 1367889999998776644
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.43 E-value=0.022 Score=56.15 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.|++|+|||.. +..++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999963 44444443
No 222
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.054 Score=63.39 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=85.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+.++|+||+|||+.+...+...+... +....++|.+.+.-.+ ....+..++..+|+.+..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~~---- 258 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDIA---- 258 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCHH----
Confidence 466688899999999986654443333221 1123456666653332 23445666666676554333222
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+...+ ..+....+|+||.+=+.-. ......+..+.....+..-++++|||....
T Consensus 259 -----------------dl~~al-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 259 -----------------DLQLML-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred -----------------HHHHHH-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 222122 1234456667776532110 001122222222223445578899997544
Q ss_pred -HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+...+..|-..++. .-++...++..+.-.++.++... +-++..+++.+.
T Consensus 315 ~~~~~~~~f~~~~~~-------------~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 315 TLDEVISAYQGHGIH-------------GCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHHHHHhcCCCCC-------------EEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 55555555432211 01123345556666677776653 345656665554
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.058 Score=61.45 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=29.1
Q ss_pred cCCceEEEeccchhhhccCC-hhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+.+......| ...+..|+..... ...+|+.|-..|..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44678999999986543332 2345555555433 456766666655554
No 224
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.30 E-value=0.0076 Score=65.23 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=63.8
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCC-ChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS-GVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
..|.+||||..---|..+...+..|.. -+..++-++.-. ...+|+..|.. .+.|.||||+||..++..+. +.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l~ 200 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSLS 200 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCcc
Confidence 478999999987777777777766531 123444445443 67788888875 57999999999999997654 5788
Q ss_pred CceEEEeccchh
Q 001261 617 RVTYLVMDEADR 628 (1112)
Q Consensus 617 ~i~~vViDEah~ 628 (1112)
++.+||||=-|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
No 225
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.22 E-value=0.012 Score=74.25 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=91.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC----------CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEE
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----------VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~----------~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
.|.++++...+|+|||..-+...+.++-..-+ .......-+|||||. ++..||+.+|.+-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 56778999999999998776665544221110 001123467999996 56799999999876643 5544
Q ss_pred EEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhc--CCcccc-------------cCCce--EEEeccchhhhccCC
Q 001261 573 PVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTS--GGKITN-------------LRRVT--YLVMDEADRMFDMGF 634 (1112)
Q Consensus 573 ~~~gg~~~~~-~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~~~~-------------l~~i~--~vViDEah~~~~~gf 634 (1112)
+|-|..... ......-.+||||+|+..|..-+... .+..-. |-.+. -|+||||+.+-. .
T Consensus 451 -~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 451 -LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred -EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 444432111 11111234899999999997666432 111111 11222 289999996543 3
Q ss_pred hhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 635 EPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 635 ~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
......++..++ ....-++|+|+-..+.
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhh
Confidence 444555555543 3346788999754443
No 226
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.22 E-value=0.27 Score=58.98 Aligned_cols=187 Identities=14% Similarity=0.219 Sum_probs=108.3
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcC-CCeEEE--EcCcccccC--------
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN-KPVEIQ--VGGRSVVNK-------- 686 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~-~p~~i~--i~~~~~~~~-------- 686 (1112)
+.|+.+|-|.++. .++.. .+-+|+..+||.|-- .|...++. -|..+. .-...+++.
T Consensus 527 lky~lL~pA~~f~---------evv~e---aravvLAGGTMeP~~-e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHFA---------EVVLE---ARAVVLAGGTMEPVD-ELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHHH---------HHHHH---hheeeecCCccccHH-HHHHHhcccchhhccceecccccChhheeeeeec
Confidence 5788888887632 22222 234888899987643 33333332 111000 000111111
Q ss_pred ------CccEEEEecccchhHHHHHHHHHhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHH
Q 001261 687 ------DITQLVEVRPESDRFLRLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQT 751 (1112)
Q Consensus 687 ------~i~q~~~~~~~~~k~~~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~ 751 (1112)
.+.-.+.......-+..|-..+..+.. +|.|++|+++......+.+.+...|+ +-+++-...+
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~-- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT-- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--
Confidence 222223333333444444444443322 48899999999999999999887653 2333333333
Q ss_pred HHHHHHHHhh----cCCccEEEec--CcccccCCCCC--ccEEEEeCCCCC-----------------------------
Q 001261 752 DRESTISDFK----SNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH----------------------------- 794 (1112)
Q Consensus 752 ~R~~~~~~F~----~g~~~VLVaT--~v~~~GlDi~~--v~~VI~~d~p~s----------------------------- 794 (1112)
-..++..|. .|.-.||+|. .-++.|||+.+ ..+||..++|..
T Consensus 672 -~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yE 750 (821)
T KOG1133|consen 672 -VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYE 750 (821)
T ss_pred -HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHH
Confidence 345666665 4555677665 67889999987 788888888752
Q ss_pred ---HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 795 ---YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 795 ---~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+-...|-||||-|.-+.--+|+|++.
T Consensus 751 nlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 751 NLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred HHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 01235999999998766666666654
No 227
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=96.20 E-value=0.008 Score=68.43 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=52.0
Q ss_pred ccchhhhhHHhhhCCeEeccce-eeCCCCC------CCC-CCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQ-YFPPSRI------AGP-GERKLYLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~-~~~~~~~------~~~-~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~~ 1094 (1112)
..+.||..+...|||-|.+||+ -+-.|+. ..+ -+-+||.+|.+.|++.|++|++.|+.||.+++
T Consensus 161 PRG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~eki~~Ai~vienli~~av 232 (554)
T KOG0119|consen 161 PRGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEKIKKAIAVIENLIQSAV 232 (554)
T ss_pred CCccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999994 2233331 112 35789999999999999999999999999854
No 228
>PRK08116 hypothetical protein; Validated
Probab=96.19 E-value=0.085 Score=58.54 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=29.1
Q ss_pred cCCceEEEeccchh--hhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADR--MFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~--~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+++||||+++. ..++ ....+..|+... .....+|+.|-..|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 44578999999963 2222 233455566554 345667777777666543
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.12 E-value=0.072 Score=59.00 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=26.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
.+..+++.|++|+|||..+ ..+...+... .|..|+++ +...|..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEE-EHHHHHHH
Confidence 3577999999999999643 3344444331 14455555 44444443
No 230
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.13 Score=56.90 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=89.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-h-hHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-R-ELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-r-eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.+..++++|++|+|||+.+.+.+... .. .+..+.++. -+ + ..+.|| ..++..+++.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~~~~----- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVIAV----- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceEEec-----
Confidence 44678889999999998666544332 21 133444443 22 2 333443 34444444433221
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.++..|...+..- .....+++||||-+=++. +......+..++....++.-++++|||.
T Consensus 137 ----------------~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ----------------RDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------------CCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 2444444443211 122357899999987653 2223344556666666665577799986
Q ss_pred c-HHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 659 P-RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 659 ~-~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. ..+...+..|-.-++. .-++.-.++..+.-.++.++... +-++..++..+
T Consensus 197 ~~~d~~~~~~~f~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq 248 (270)
T PRK06731 197 KSKDMIEIITNFKDIHID-------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 248 (270)
T ss_pred CHHHHHHHHHHhCCCCCC-------------EEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 4 4666666666432210 01122344455666666666553 33555555443
No 231
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.08 E-value=0.25 Score=63.11 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..++|-|.+++.. ....++|.|..|||||.+.+.-+...+.... . ....+|+|+-|+..|..+...+..++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-V---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-C---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3578999998875 3567999999999999987766666554321 1 124689999999999988888876654
No 232
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.046 Score=68.09 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC-CcEEEEc-cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG-PVGLIMA-PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~-~~~LIl~-PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|+||+|||+++...+...... .| .++.++. -|--.+ ..+.++.++..+++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-------~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~-------- 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-------EGADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHA-------- 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-------cCCCeEEEecCcccchH--HHHHHHHHHHhCCCCccc--------
Confidence 4567889999999998765544433222 12 2343433 332111 124556666666654432
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
+.+|..|.+.+. .+..+++|+||=+=++.. ......+..+.....+..-++++|||...
T Consensus 248 -------------~~~~~~l~~al~-------~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~ 307 (767)
T PRK14723 248 -------------VKDAADLRFALA-------ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG 307 (767)
T ss_pred -------------cCCHHHHHHHHH-------HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH
Confidence 234554444442 233456777776665431 11222333333344455667888888753
Q ss_pred H-HHHHHHHh
Q 001261 661 Q-VEILARKV 669 (1112)
Q Consensus 661 ~-~~~l~~~~ 669 (1112)
. +..++..|
T Consensus 308 ~~l~~i~~~f 317 (767)
T PRK14723 308 DTLNEVVHAY 317 (767)
T ss_pred HHHHHHHHHH
Confidence 3 34444444
No 233
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.12 Score=61.48 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=34.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
.|.-++++|+||+|||++....+....... +....+||-+-+--++ ..+.+..|+..+++.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHA 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeec
Confidence 355678899999999987655444332221 1112334443332122 235566666666665543
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.03 E-value=0.063 Score=58.47 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=29.7
Q ss_pred cCCceEEEeccchhhhccCChh-HHHHHHHhcC-CCCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEP-QITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~-~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+++......|.. .+..|+.... ....+|++|---+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3468899999999765444443 3444555443 3466777776655444
No 235
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.02 E-value=0.067 Score=63.18 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
..++++|++|+|||++....+. ++.. .|..+++++ .+ |..+ +..+..++..+++.+..........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~- 163 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV- 163 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-
Confidence 4578889999999986554443 3332 134455444 32 3322 3445555555555432211111100
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.+.+.. +..+++||||.+-++. +......+..+...+.++.-+++++||....
T Consensus 164 ----------------~i~~~al~~-------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 164 ----------------EIAKEGLEK-------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred ----------------HHHHHHHHH-------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH
Confidence 011222221 2234789999996542 1223344556666667777788889987655
Q ss_pred HHHHHHHh
Q 001261 662 VEILARKV 669 (1112)
Q Consensus 662 ~~~l~~~~ 669 (1112)
....+..|
T Consensus 221 av~~a~~F 228 (437)
T PRK00771 221 AKNQAKAF 228 (437)
T ss_pred HHHHHHHH
Confidence 54444443
No 236
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.99 E-value=0.024 Score=66.97 Aligned_cols=145 Identities=14% Similarity=0.258 Sum_probs=85.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
-.++.|..|||||.+.++-++..+... ..+..+||+-||.. |..-++..+...+..+|+....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 357889999999999888888777764 12466788888877 66667788887777766542221111110 11
Q ss_pred HHHhc-CCeEEEeCc-hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccH
Q 001261 585 SELKR-GTEIVVCTP-GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPR 660 (1112)
Q Consensus 585 ~~l~~-~~~IvV~Tp-~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~ 660 (1112)
. +.. |..|++..- .... ++.....+.+++||||..+.. ..+..++..++. ....|++|.||+.
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred E-ecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1 112 455666543 2111 112334478999999998743 244444444442 2224888999865
Q ss_pred HHHHHHHHhc
Q 001261 661 QVEILARKVL 670 (1112)
Q Consensus 661 ~~~~l~~~~~ 670 (1112)
...-+...|+
T Consensus 143 ~~~w~~~~f~ 152 (396)
T TIGR01547 143 PLHWVKKRFI 152 (396)
T ss_pred CccHHHHHHH
Confidence 3333333443
No 237
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.98 E-value=0.035 Score=55.21 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCC---CeeeecCCCCHHHHHHHHHHhhcCCc---cEEEecCc--ccccCCCCC--ccEEEEeCCCCC--
Q 001261 727 CDALFRDLLKHGY---PCLSLHGAKDQTDRESTISDFKSNVC---NLLIATSV--AARGLDVKE--LELVINFDAPNH-- 794 (1112)
Q Consensus 727 ~~~l~~~L~~~g~---~~~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v--~~~GlDi~~--v~~VI~~d~p~s-- 794 (1112)
.+.++..+...++ ...++.-+....+...++..|+.... .||+|+.- ++.|||+++ +.+||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12222222333344678888886543 68888866 999999998 688998888741
Q ss_pred --H---------------------------hHHHHHhcccCCCCCccEEEEEec
Q 001261 795 --Y---------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 795 --~---------------------------~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
+ ....|.+||+-|....--+++|++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 112488999999865544555554
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.17 Score=58.82 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=83.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||+.....+...... .|..++++. +.|..+. ..+..++..+++.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~~------- 285 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYPV------- 285 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeeeh-------
Confidence 3457788999999998766555433222 234444444 4455444 24555555555533211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcC---CCCcEEEEecc
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR---PDRQTVLFSAT 657 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~---~~~q~il~SAT 657 (1112)
..+..+...+. -..+++||||=+-++. +......+..++..+. +..-++++|||
T Consensus 286 --------------~~~~~l~~~l~--------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 286 --------------KDIKKFKETLA--------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred --------------HHHHHHHHHHH--------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 01122222221 1356788888765542 2222334444444432 23457888999
Q ss_pred ccH-HHHHHHHHhcCCCeEEEEcCcccccCCccE-EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 658 FPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 658 ~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q-~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
... .+...+..|-.-++ .. ++.-.+...+.-.++.++... +-++..++..+
T Consensus 344 ~~~~~~~~~~~~f~~~~~--------------~glIlTKLDEt~~~G~il~i~~~~--~lPI~ylt~GQ 396 (432)
T PRK12724 344 SSYHHTLTVLKAYESLNY--------------RRILLTKLDEADFLGSFLELADTY--SKSFTYLSVGQ 396 (432)
T ss_pred CCHHHHHHHHHHhcCCCC--------------CEEEEEcccCCCCccHHHHHHHHH--CCCEEEEecCC
Confidence 876 45555555422221 11 122334445555566666542 33555555443
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.91 E-value=0.081 Score=53.34 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=15.0
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++++|++|+|||+.+...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 67899999999975444333
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.89 E-value=0.016 Score=56.56 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++|++|+|||+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4578999999999997544
No 241
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.80 E-value=0.11 Score=57.68 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+-++++|++|+|||++..-.+... .. .|.+++++. +.|.-+. ..+..++...++.+.....+.....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~~ 141 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPAA 141 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHHH
Confidence 456778999999998655544332 22 245565555 3344332 3455555556655443322221111
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcC------CCCcEEEEe
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR------PDRQTVLFS 655 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~------~~~q~il~S 655 (1112)
. +.+.+.. .....+++||||=+-++. +......+..+...+. ++.-+++++
T Consensus 142 ~-----------------~~~~l~~-----~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~ 199 (272)
T TIGR00064 142 V-----------------AFDAIQK-----AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLD 199 (272)
T ss_pred H-----------------HHHHHHH-----HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 0 0111110 112345677777666543 1122334455554444 566678899
Q ss_pred ccccHHHHHHHHHhc
Q 001261 656 ATFPRQVEILARKVL 670 (1112)
Q Consensus 656 AT~~~~~~~l~~~~~ 670 (1112)
||........+..|.
T Consensus 200 a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 200 ATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCHHHHHHHHHHH
Confidence 997665444444444
No 242
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.77 E-value=0.019 Score=69.34 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 492 PIQAQALPVIMS-----G----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~-----g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|+|.-.+-.++. | +.+++.-+=|.|||......++.++.-. ...++.++++++++.-|..++..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777662 2 3477788999999986665555555432 23478899999999999999999998
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
+.......... .. . .+.... ...|.+...+.++..+.......-.+ +..++|+||+|.+-+......+..-+
T Consensus 77 ~i~~~~~l~~~-~~-~----~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~-~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKR-KK-P----KIIKSN-KKEIEFPKTGSFFKALSSDADSLDGL-NPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccc-hh-h----hhhhhh-ceEEEEcCCCcEEEEEecCCCCccCC-CCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 87653211100 00 0 000000 12333332233333332222222222 46899999999876543333333333
Q ss_pred HhcCCCCcEEEE
Q 001261 643 QNIRPDRQTVLF 654 (1112)
Q Consensus 643 ~~~~~~~q~il~ 654 (1112)
.. +++.+++.+
T Consensus 149 ~~-r~~pl~~~I 159 (477)
T PF03354_consen 149 GA-RPNPLIIII 159 (477)
T ss_pred cc-CCCceEEEE
Confidence 33 345555554
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=95.77 E-value=0.087 Score=58.18 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHH
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++..+..++++||+|+|||..+....
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 35578899999999999997555443
No 244
>PHA02533 17 large terminase protein; Provisional
Probab=95.59 E-value=0.071 Score=64.74 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.|.|+|...+..+..++-.++..+=..|||++....++..+... .+..+++++|+..-|..++..++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46799999998877677777888888999987776555444322 2568999999999999988888776554
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.58 E-value=0.095 Score=54.60 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+++.|++|+|||+..+-.+...+. +|..|++++. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 688999999999865555554432 2566777754 45556666655554
No 246
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.51 E-value=0.021 Score=62.12 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=40.6
Q ss_pred CCCCCcccccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001261 460 KDVPKPIKTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+|..|.+|.+++||+-+.+.+.. .| =+||.||||||||+. +..|+.++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3468889999999999988774432 22 367789999999975 77788887764
No 247
>PRK08727 hypothetical protein; Validated
Probab=95.44 E-value=0.065 Score=58.27 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=25.9
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
.++.+|||||+|.+.... ....+..++..+.. ..++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456799999999875332 22234445544433 334555555555443
No 248
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.40 E-value=0.074 Score=71.18 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHH--HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAF--VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~--llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
.+++-|.+|+..++.. +-++|.|..|+|||+++ ++-++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66888899999999763 2222322211 2356788899998776654
No 249
>PRK12377 putative replication protein; Provisional
Probab=95.39 E-value=0.14 Score=55.97 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.3
Q ss_pred cCCceEEEeccchhhhccCC-hhHHHHHHHhcCC-CCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
+..+++|||||.+......+ ...+..|+..... ...+|++|---+..
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 45689999999964432222 2344455555433 46677776654433
No 250
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.31 E-value=0.2 Score=58.83 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=66.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH-
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ- 582 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~- 582 (1112)
-++++|++|+|||++..-.+. ++.. .|.++++++ |.|.-|.+ +++.++...++.+...+.+.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~-------~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR-------KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH
Confidence 467789999999976554333 2222 244566655 45654443 344455556666655444333211
Q ss_pred ---HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 583 ---QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 583 ---~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+..+.. ..+++||||=+-++-. ......+..+...+.|+.-+++++||.
T Consensus 171 ~~~~l~~~~~--------------------------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 171 ASEGVEKFKK--------------------------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred HHHHHHHHHh--------------------------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 1111111 1244555555543211 112334555555566666678888887
Q ss_pred cHHHHHHHHHh
Q 001261 659 PRQVEILARKV 669 (1112)
Q Consensus 659 ~~~~~~l~~~~ 669 (1112)
.......+..|
T Consensus 225 Gq~a~~~a~~F 235 (429)
T TIGR01425 225 GQAAEAQAKAF 235 (429)
T ss_pred ChhHHHHHHHH
Confidence 65555455444
No 251
>PRK06893 DNA replication initiation factor; Validated
Probab=95.28 E-value=0.049 Score=59.05 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.0
Q ss_pred cCCceEEEeccchhhhcc-CChhHHHHHHHhcCC-CCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
+.++++|||||+|.+... .+...+..++..+.. ..++|++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 345789999999987532 233355566665544 34567788876554
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=95.28 E-value=0.18 Score=59.56 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=33.8
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-++++|++|+|||++..-.+... ... .|.++++++ +.|..+. ..++.++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l-~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYL-KKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 46778999999998655444432 221 144555555 4554443 33445555567665543
No 253
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.18 E-value=0.095 Score=71.14 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++.|..|+..++.+ +-++|.|..|+|||++ +-.++..+... ....+..++.++||--.|..+. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~----e--- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR----S--- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHH----h---
Confidence 36899999999999975 4678889999999975 33333333211 1123567888999987765442 1
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH--hcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC--TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~--~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
.|+... |-.+|+.... ...+. ......++||||||=.+. ...+..++.
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~-~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGE-TPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred -cCcchh------------------------hHHHHhccccccccccc-CCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 233221 1111111000 00001 112345799999998654 334556666
Q ss_pred hcCC-CCcEEEEecc
Q 001261 644 NIRP-DRQTVLFSAT 657 (1112)
Q Consensus 644 ~~~~-~~q~il~SAT 657 (1112)
.+.. +.++||+.-+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 6653 5778877766
No 254
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.12 E-value=0.064 Score=68.33 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|-|.+++.. ....++|.|..|||||.+.+.-+...|.... -....+|+|+.|+..|..+...+..++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3578999998864 3568999999999999986666655554311 123478999999999999888887764
No 255
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.11 E-value=0.066 Score=67.44 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++-|.+|+.. ....++|+|..|||||.+.+.-+...|.... -....+|+|+.|+..|..+...+..++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 367899998865 3567899999999999987766666554321 123478999999999998888777654
No 256
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.06 E-value=0.013 Score=59.97 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=54.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l 587 (1112)
|+.|+-|-|||.+..+.+...+.. ....++|.+|+.+-+..++..+...+..++++......+. ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 578999999998766554322211 1246889999999888777766665555544431000000 000111
Q ss_pred hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 588 ~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..|.+..|..+... ....++||||||=.+- .+.+..++... ..++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 12467778888765321 1235799999999753 45666665333 3678888864
No 257
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.04 E-value=0.15 Score=57.12 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.++.++++|+||+|||+.....+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456888999999999865544433
No 258
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.01 E-value=0.13 Score=55.56 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+..+++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456799999999999975443
No 259
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.80 E-value=0.12 Score=65.39 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=73.5
Q ss_pred cchhHHH-HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~-ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
...|... ++.++.....+.++||.+||..-|.+++..|.. .|+.+..+||+++..++..++..+.+|...|||+|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT 371 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGT 371 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEch
Confidence 3455443 334444444456899999999999888777765 37899999999999999999999999999999999
Q ss_pred Cc-ccccCCCCCccEEEEeC
Q 001261 772 SV-AARGLDVKELELVINFD 790 (1112)
Q Consensus 772 ~v-~~~GlDi~~v~~VI~~d 790 (1112)
.. +...+.+.++.+||.-.
T Consensus 372 ~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 372 HALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred HHHhcccchhcccceEEEec
Confidence 64 44567888999998643
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.18 Score=55.37 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+.++++.|++|+|||..++..+...+ . .|..|+ .+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-------~g~sv~-f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-------AGISVL-FITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-------cCCeEE-EEEHHHHHHHHHHHH
Confidence 678999999999999986555444443 3 244444 457778877654433
No 261
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.67 E-value=0.31 Score=57.56 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=63.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||++..-.+...... .|.+++++. +.|..+. ..+..++...++.+.....+.....-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHHHH
Confidence 47778999999998755544432211 134455544 3444333 34445555566665543332221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
. ...+.. .....+++||||=+-++. +......+..+...+.++--+++++||.....
T Consensus 171 ~-----------------~~al~~-----~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~ 228 (428)
T TIGR00959 171 A-----------------RRALEY-----AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA 228 (428)
T ss_pred H-----------------HHHHHH-----HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH
Confidence 0 011100 011234556666555432 11122334444444555555677777766555
Q ss_pred HHHHHHhc
Q 001261 663 EILARKVL 670 (1112)
Q Consensus 663 ~~l~~~~~ 670 (1112)
...+..|.
T Consensus 229 ~~~a~~f~ 236 (428)
T TIGR00959 229 VNTAKTFN 236 (428)
T ss_pred HHHHHHHH
Confidence 55555443
No 262
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.65 E-value=0.2 Score=63.80 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+.+|||||+|+|.... ...|.++|...+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 568899999999986533 234555566655555445444 543
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=94.63 E-value=0.13 Score=55.83 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35679999999976432 2345577777766554445566666443
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.62 E-value=0.12 Score=56.16 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=24.2
Q ss_pred ceEEEeccchhhhcc-CChhHHHHHHHhcCC-CCcEEEEeccccH
Q 001261 618 VTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPR 660 (1112)
Q Consensus 618 i~~vViDEah~~~~~-gf~~~i~~il~~~~~-~~q~il~SAT~~~ 660 (1112)
+.+|||||+|.+... .+...+..++..+.. ....|++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 568999999987532 234445555555433 2223444555443
No 265
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.60 E-value=0.31 Score=60.34 Aligned_cols=149 Identities=20% Similarity=0.221 Sum_probs=92.4
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 482 IRKLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|..+....+..-|.+.+..++..+ -+++.|.-|=|||.+.-+.+... .... + .-.++|.+|+.+-+..++.-
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~-~~~~----~-~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAA-ARLA----G-SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHH-HHhc----C-CceEEEeCCCHHHHHHHHHH
Confidence 444555555566666667777554 47778999999998877666322 2210 1 34688999999998888888
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
+.+-+..+|+............ +..-..+..|-+.+|.... . ..++||||||=.|- .+.+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----hHHHH
Confidence 8777777765533222211000 0000122346666775431 1 15799999999763 56666
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001261 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
+++... +.++||.|+.
T Consensus 342 ~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 342 KLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHhhc----CceEEEeeec
Confidence 666554 4689999975
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.56 E-value=0.63 Score=47.04 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=41.3
Q ss_pred cCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
...+++|||||+=..++.++. ..+..++...+...-+|+++-.+|+.+..++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 457899999999988777754 4677788888888888888888888876654
No 267
>PTZ00293 thymidine kinase; Provisional
Probab=94.56 E-value=0.19 Score=53.06 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=28.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.||++||||.-++..+.++... +..++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEec
Confidence 35556889999999998766665555433 5678888884
No 268
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.53 E-value=0.24 Score=59.03 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l 665 (1112)
..+++|||||+|.+.... ....+..++..+. ...|+|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 457899999999875432 2334445554442 3466666666666665443
No 269
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.51 E-value=0.34 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+.+|||||+|+|....| ..+.++|..-+... +++|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v-~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHV-KFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCe-EEEEEECC
Confidence 3578999999998865433 23444555544444 34444453
No 270
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.28 Score=59.90 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=23.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.++||||+|+|....|. .+.++|..-+....+||.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346789999999988654332 3334444434445444444
No 271
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.48 E-value=0.13 Score=65.05 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
++|-|.+++.. ....++|+|..|||||.+.+.-+...+.... .....+|+|+.|+..|.++...+...+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTLGKG-- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhCcc--
Confidence 67889998764 4568999999999999887766666654321 123468999999999999888777654210
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~ 606 (1112)
....|.|+|..+|...+.
T Consensus 74 -------------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 -------------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred -------------------ccCCeEEEeHHHHHHHHH
Confidence 113567888877755443
No 272
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.46 E-value=0.21 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
..+++.|++|+|||.. +..+.+.+... ..+..++++.+ ..+...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4588999999999953 34445544431 12445565544 555554443332200
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+.+..+. ..+..+++|||||+|.+.... ....+..++..+.. ..|+|++|-..|..+
T Consensus 195 --------------~~~~~~~-------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFK-------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHH-------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 1111111 123467899999999764321 23345555555433 346666555555443
No 273
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.45 E-value=0.26 Score=62.13 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
..|....+..+..... +.++||.++++.-+.++...|.+ .|..+..+||+++..+|..++..+..|..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4555555444444333 45899999999999999999976 488899999999999999999999999999999997443
Q ss_pred ccCCCCCccEEEEeC
Q 001261 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d 790 (1112)
. +.+.++.+||.-.
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888888644
No 274
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.43 E-value=0.14 Score=64.14 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.-..+++-|..|+-. ....++|.|..|||||.+.+.-+...|.... ..+..+|+|+.|+..|..+...+...
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 335789999998853 3456899999999999886665554443321 12458999999999999888777664
No 275
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.22 Score=56.95 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHcCC----CEEEEcCCCChHHHHHHHH
Q 001261 490 PMPIQAQALPVIMSGR----DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~----dvii~a~TGsGKT~~~llp 524 (1112)
++|+|...|..++... -+|+.|+.|+|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 4699999998887542 4789999999999754443
No 276
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.42 E-value=0.28 Score=55.96 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=25.4
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998733223445666676666666555544
No 277
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.34 E-value=0.12 Score=65.77 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++|-|.+++.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+-|+..|..+...+..++
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 478999998864 3468999999999999987666665553221 123468999999999999888887764
No 278
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.27 E-value=0.18 Score=54.47 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=25.9
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCc-EEEEeccccH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ-TVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q-~il~SAT~~~ 660 (1112)
..++|||||+|.+... ....+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999986432 23344455554443433 5777777654
No 279
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.22 E-value=0.21 Score=54.76 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=30.8
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+.+|||||||.|... -+..+.+++........+||...-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 4566789999999988643 3556677777766666666666553
No 280
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.17 E-value=0.2 Score=52.07 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=79.1
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCC---
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS--- 578 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~--- 578 (1112)
+....+++...+|.|||.+++--+++.+- .|.+|+|+-=.+--. -+.+...+....++.+...-.+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g--------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~ 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG--------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWE 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH--------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCccc
Confidence 45568899999999999998888887643 466777764222110 01122222111133332211110
Q ss_pred --ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEE
Q 001261 579 --GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 579 --~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~ 654 (1112)
...+.... ....+..... ...-..+++|||||+-..++.|+. ..+..++...++..-+|++
T Consensus 90 ~~~~~e~~~~-----------~~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlT 154 (191)
T PRK05986 90 TQDRERDIAA-----------AREGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVIT 154 (191)
T ss_pred CCCcHHHHHH-----------HHHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEE
Confidence 01111110 0011111111 122356899999999999888864 4677778877777777777
Q ss_pred eccccHHHHHHHH
Q 001261 655 SATFPRQVEILAR 667 (1112)
Q Consensus 655 SAT~~~~~~~l~~ 667 (1112)
.-.+|+.+..++.
T Consensus 155 GR~~p~~Lie~AD 167 (191)
T PRK05986 155 GRGAPRELIEAAD 167 (191)
T ss_pred CCCCCHHHHHhCc
Confidence 7778887766553
No 281
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.17 E-value=0.71 Score=56.42 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHH---HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 490 PMPIQAQALPVI---MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 490 pt~iQ~~ai~~i---l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
|.|.=.+-|..+ +..+-.++.+|=|.|||.+..+.++..+.. .+..++|.+|...-+.+++..+..++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 344444444443 456778889999999998766555433321 2568999999999999999998888875
Q ss_pred cC
Q 001261 567 MG 568 (1112)
Q Consensus 567 ~~ 568 (1112)
++
T Consensus 243 lg 244 (752)
T PHA03333 243 YQ 244 (752)
T ss_pred hc
Confidence 43
No 282
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.14 E-value=0.66 Score=47.73 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=29.8
Q ss_pred CceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 617 RVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 617 ~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
.+.+||||....+. +..+...+..+.....++.-+++++|+.+......+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 46678888887642 2223334444444444566667777765555444444443
No 283
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.09 E-value=0.21 Score=59.24 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 493 IQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 493 iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
||.+-=..|. .+.-+||+|..|||||.+++--+...+...+..-. +..|||+.|.+.++.-+.+++
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhc
Confidence 4554444454 35568889999999999888777766666543322 334999999998876544433
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.09 E-value=0.19 Score=70.03 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH---HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFV---LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~l---lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
..+++.|.+|+..++.+ +-++|.|..|+|||+++. -++...+.. .+..++.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 36899999999999876 456778999999997641 233333222 366788899997766544
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.08 E-value=0.46 Score=51.48 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=31.5
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|.-+++.|++|+|||+..+..+...+ . .|..+++++. -+-..++...+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~-------~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q-------NGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h-------CCCcEEEEeC-CCCHHHHHHHHHH
Confidence 3467788999999999976444444332 2 2456777774 3333444444443
No 286
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.05 E-value=0.74 Score=51.47 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=70.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE-eCCCChHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV-YGGSGVAQQ 583 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~-~gg~~~~~~ 583 (1112)
++++|-.|+|||++..-.+. .+.. .|..||+.+ ..|+-|. ++++-|+...|+.++.. +|+.+..--
T Consensus 142 il~vGVNG~GKTTTIaKLA~-~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAK-YLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEecCCCchHhHHHHHHH-HHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 67789999999986443333 3332 366777776 4455555 44556666678877763 333322221
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCc-----E-EEEec
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQ-----T-VLFSA 656 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q-----~-il~SA 656 (1112)
... +.. ..-..+++|++|=|-||-+. +....+.+|..-+.+... + +.+=|
T Consensus 211 fDA------------------i~~-----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 211 FDA------------------IQA-----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HHH------------------HHH-----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 111 111 12234555666666555432 234456666665555432 3 44478
Q ss_pred cccHHHHHHHHHh
Q 001261 657 TFPRQVEILARKV 669 (1112)
Q Consensus 657 T~~~~~~~l~~~~ 669 (1112)
|.-.+...-++.|
T Consensus 268 ttGqnal~QAk~F 280 (340)
T COG0552 268 TTGQNALSQAKIF 280 (340)
T ss_pred ccChhHHHHHHHH
Confidence 8776655555544
No 287
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.99 E-value=0.29 Score=54.30 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC---CCCcEEEEccchhHHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~---~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+++++|+||.|||...--..-. .++.... .-|.++|-+|...-..-+|..+-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~----hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRL----HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHH----CCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 47999999999999743222211 2221111 236777777877666656655544
No 288
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.94 E-value=0.19 Score=62.94 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=72.6
Q ss_pred chhHH-HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~-~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|.. .++.++.....+.+++|.+||..-|.+++..+.. .|+.+..+||+++...+..++..+.+|...|||+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 34443 3334444444456899999999999988877765 378999999999999999999999999999999996
Q ss_pred ccc-ccCCCCCccEEEEeC
Q 001261 773 VAA-RGLDVKELELVINFD 790 (1112)
Q Consensus 773 v~~-~GlDi~~v~~VI~~d 790 (1112)
.+- ..+.+.++.+||.-.
T Consensus 347 ~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 347 ALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred HHHhccccccccceEEEec
Confidence 543 567888899988533
No 289
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.92 E-value=0.27 Score=59.06 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~ 663 (1112)
..+++|||||+|.+.... ....+..++..+. ...++|+.|.+.|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999875322 1223444454443 34555555555544443
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.87 E-value=0.33 Score=57.48 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=23.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
..+++.|++|+|||... ..+...+... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEE
Confidence 45789999999999643 4455555432 1244566653
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.86 E-value=0.24 Score=50.65 Aligned_cols=52 Identities=13% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++|||||+-..++.|+. ..+..++...++...+|++.-.+|+.+..++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 56899999999988888854 46777888888888888888888888766553
No 292
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.86 E-value=0.28 Score=59.80 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=30.8
Q ss_pred cCCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~ 663 (1112)
+.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999875432 23345556655544 4677776666665543
No 293
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.83 E-value=0.3 Score=59.30 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
..|....+.++..... ++++||.+|+..-+.+++..|.. .+..+..+||+++..+|..+.....+|...|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 4455555555544433 45899999999999999999976 477899999999999999999999999999999996543
Q ss_pred ccCCCCCccEEEEeC
Q 001261 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d 790 (1112)
. +-+.++.+||.-.
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4677888888643
No 294
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.80 E-value=0.89 Score=51.72 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||+....-+... .. .+..++++. .+ +..+.+ .+..+....++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~-------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KA-------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 4457788999999998644333322 21 244555554 43 433322 23333444455554432222211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhc------CCCCcEEEE
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNI------RPDRQTVLF 654 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~------~~~~q~il~ 654 (1112)
. ...+.+.. ....++++||||=+-++.. ......+..+...+ .+..-++++
T Consensus 183 ~-----------------~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 183 S-----------------VAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred H-----------------HHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 0 00111110 1124467777777766432 11223344443322 244457888
Q ss_pred eccccHHHHHHHHHhc
Q 001261 655 SATFPRQVEILARKVL 670 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~~ 670 (1112)
+||........+..+.
T Consensus 241 ~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 241 DATTGQNALSQAKAFH 256 (318)
T ss_pred ECCCChHHHHHHHHHH
Confidence 9997654433444443
No 295
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.77 E-value=0.3 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
=.+|+|||+||+-- .+...++-++ .+..++++.||-
T Consensus 105 ~tiLflDEIHRfnK----~QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFNK----AQQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcCh----hhhhhhhhhh-cCCeEEEEeccC
Confidence 36899999999532 2223333333 345688888984
No 296
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.76 E-value=0.56 Score=58.68 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
++|.|+||+|||++. ..++..|.
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 358999999999764 34455543
No 297
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.73 E-value=0.55 Score=53.15 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=27.5
Q ss_pred cCCceEEEeccchhh--hccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADRM--FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~--~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+.+||||+.... .+|.....+..|+... .....||+.|--.+..+.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 456889999999843 2222112334455543 345567776666544443
No 298
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.72 E-value=0.48 Score=52.47 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
..++.++..|..+++.|++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4556677789999999999999997654
No 299
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.65 E-value=0.31 Score=56.03 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987432 2334555666555555554433
No 300
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.62 E-value=0.62 Score=57.67 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998655443
No 301
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.56 E-value=0.34 Score=65.30 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|..+...+...+...--
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5889999997 4688999999999999999888888777643 11235899999999999888888775432110
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
. ... .......+..-...-|+|...|+..+........+|+ -.+=|+||...
T Consensus 75 ~----~p~--~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 Q----EPN--SKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred c----Cch--hHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 0 000 0111122222235678998888765555443333332 24556888774
No 302
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.44 E-value=0.22 Score=53.52 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=30.7
Q ss_pred cCCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||.+|.+.... ....+..++..+. .+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4568899999999876432 2344555555553 4567777776776654
No 303
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.41 E-value=0.29 Score=63.34 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=73.6
Q ss_pred cchhHHHHH-HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
...|....+ .++.....+.+++|.+||..-|.+.+..|... ++.+..++|..+..++..++..+.+|..+|||+|
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGT 561 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGT 561 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEch
Confidence 345554333 33333344568999999999999998887753 6778899999999999999999999999999999
Q ss_pred C-cccccCCCCCccEEEEeCC
Q 001261 772 S-VAARGLDVKELELVINFDA 791 (1112)
Q Consensus 772 ~-v~~~GlDi~~v~~VI~~d~ 791 (1112)
. .+...+.+.++.+||.-..
T Consensus 562 p~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 562 HKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred HHHhhCCCCcccCCEEEeecc
Confidence 7 4445688889999886433
No 304
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=93.39 E-value=0.11 Score=60.26 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 522 llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
|+-++.|+.. .+-.|||.-| |.+.+.+.+++|+...|+.+-.+
T Consensus 496 clrl~r~F~h-------knHLClVFE~---LslNLRevLKKyG~nvGL~ikaV 538 (752)
T KOG0670|consen 496 CLRLFRHFKH-------KNHLCLVFEP---LSLNLREVLKKYGRNVGLHIKAV 538 (752)
T ss_pred HHHHHHHhhh-------cceeEEEehh---hhchHHHHHHHhCcccceeehHH
Confidence 4555666544 2456777767 67777888888887777765443
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.33 E-value=0.29 Score=53.34 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+. .|..+|+++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 3567888999999999866665665543 256677776 445556666666554
No 306
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.29 E-value=0.62 Score=51.60 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|+.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997543
No 307
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.7 Score=52.46 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..++|+|..++..+. .|+ -+|+.|+.|+||+..+.. +...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 467889998888766 343 488999999999975443 333443
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.89 Score=55.84 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.++||||+|+|....+ ..+.+++...+... +++|.+|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v-~FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHV-KFLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCc-EEEEEECChH
Confidence 4578999999998754333 34555555544444 3444445433
No 309
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.19 E-value=0.51 Score=58.90 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=76.1
Q ss_pred cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-C-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-G-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.|....+.++..... +.++||.++.+..+..+...|... | ..+..+|++++..+|........+|..+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35677778888777665 448999999999999999999864 4 67999999999999999999999999999999965
Q ss_pred ccccCCCCCccEEEEe
Q 001261 774 AARGLDVKELELVINF 789 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~ 789 (1112)
+.- +-++++.+||..
T Consensus 250 AvF-aP~~~LgLIIvd 264 (665)
T PRK14873 250 AVF-APVEDLGLVAIW 264 (665)
T ss_pred eEE-eccCCCCEEEEE
Confidence 432 456777888763
No 310
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.18 E-value=0.91 Score=50.32 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHH----cCC-CEEEEcCCCChHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~-dvii~a~TGsGKT~~~l 522 (1112)
+++.+.+++..+. .+. .++++|++|+|||+.+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455556655543 333 57889999999997544
No 311
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.18 E-value=0.29 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 482 IRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
+...|+ +++.|...|-.++ .+.++|++|+||||||+ ++-.++..+...+ .+-+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 334444 4567776665554 56789999999999996 3555666554322 133556666677763
No 312
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.15 E-value=0.63 Score=48.06 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+=.+++||+.||||...+.-+.++... |.+++|..|-..- .++...+...-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEeccccc-------------ccccceeeeccCCcc----
Confidence 345788999999999766655554332 6678888883211 123333333333322
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
.-++|-++..+.+.+.... ....+.+|.||||+-+
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~ 94 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFF 94 (201)
T ss_pred ------cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhC
Confidence 3456667777777776532 1122789999999963
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.7 Score=57.14 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=24.0
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+..+.+|||||+|.|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999865422 223445555544555455444
No 314
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.53 Score=55.94 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|++||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998655443
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.91 E-value=0.36 Score=53.76 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=25.7
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
..|.-+++.|++|+|||+..+..++..+.. .+..|+++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEE
Confidence 456778899999999997555444433222 255677775
No 316
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.82 E-value=0.35 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
|-......+..+..++++|+.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566777788899999999999999997654
No 317
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.64 Score=55.72 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=25.1
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.++||||+|.|....| ..+.+.+..-++...+ +|.+|-+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~f-Ilatte~~ 157 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKF-ILATTEVK 157 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEE-EEEeCChH
Confidence 45789999999998764332 2344444444444333 34445333
No 318
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.75 E-value=0.79 Score=54.43 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|+|.. .+...++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCC
Confidence 457899999998742 233344444433 4566776664
No 319
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.65 E-value=0.42 Score=50.78 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
++|+.||.|+|||+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 58999999999997433
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.65 E-value=0.33 Score=47.03 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.2
Q ss_pred ceEEEeccchhhhccC
Q 001261 618 VTYLVMDEADRMFDMG 633 (1112)
Q Consensus 618 i~~vViDEah~~~~~g 633 (1112)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999887654
No 321
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.60 E-value=0.35 Score=54.97 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 480 ETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
..|...|+ +++.|...|.. +..+..+|++|+||||||+ ++..++..+...+ ...++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 34444554 45677777765 4467789999999999995 4555655543211 23456677777776
No 322
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.60 E-value=0.69 Score=58.37 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=24.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
...+|||||+|+|.. .+...++..+ ...+++++++|.++.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCCh
Confidence 456899999998642 1223333333 345678888875543
No 323
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.60 E-value=0.57 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=18.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
..+++.|++|+|||.+ +..++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 5699999999999975 4445555443
No 324
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.87 Score=57.70 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.+|||||||+|... -...+.+++..-+....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEE-ECCCch
Confidence 35789999999998532 22344444544444443444 344333
No 325
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.47 E-value=0.69 Score=55.71 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred ccccccCC-CCHHHHHHHHH--CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001261 466 IKTWHQTG-LTSKIMETIRK--LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 466 i~~~~~~~-L~~~l~~~l~~--~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
-.+|.+++ |...+...... +.+..|-.+....++ ..+.+|+.||+|+|||+. +-.+...
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L-AKAlA~e 239 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI-AKAVANS 239 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH-HHHHHHh
Confidence 35788876 55544333222 222222222222221 246799999999999974 3344443
No 326
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.46 E-value=0.6 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.|++|+|||.+ +..++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999964 445555543
No 327
>PRK04195 replication factor C large subunit; Provisional
Probab=92.38 E-value=0.63 Score=56.43 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 328
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.38 E-value=0.35 Score=52.23 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=32.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+.. .|..|++++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 34678899999999998666666666543 044577776 334445555555544
No 329
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.33 E-value=0.87 Score=46.63 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=40.0
Q ss_pred CceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~ 668 (1112)
.+++|||||.-.++..|+. ..+..++...|....+|++.-.+|+.+..++..
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 5899999999998888854 457777777777777777777788887766544
No 330
>PF13173 AAA_14: AAA domain
Probab=92.32 E-value=1 Score=43.81 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=25.6
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.-.+|||||+|.+- ++...+..+.... ++.++|+++-.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 35689999999985 3566666666654 45566655444
No 331
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.99 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.5
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++++.|+||+|||.+ +..++..+..
T Consensus 44 n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 589999999999975 4455555544
No 332
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.22 E-value=0.82 Score=55.23 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.7
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|++||.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999865543
No 333
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.13 E-value=1 Score=55.57 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=24.9
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.+..+.+|||||+|.|.... ...+.+.+...++...+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 34578899999999875432 233444455545555455543
No 334
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.09 E-value=1.3 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
....+|++||.|- .|.+-...+..++..+ ....-+|.+|-+.|..+
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3467999999993 2333344555565554 44556777788877653
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.96 E-value=0.5 Score=53.31 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..|...|+ +++.|...|-. +..+..+|++|+||||||+. +-.++..+...+ ...+++++=.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444453 34555555554 44567899999999999964 455555544321 133566666777763
No 336
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.92 E-value=1.3 Score=53.82 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=24.0
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.....+|||||||+|.... ...+.+++...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999976432 234445555544444444433
No 337
>PLN03025 replication factor C subunit; Provisional
Probab=91.91 E-value=1.2 Score=50.77 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=23.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|.|.... ...+..++...+.... ++|+++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 47899999999976432 3344555554444443 4444443
No 338
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.91 E-value=0.82 Score=52.79 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=24.3
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||.|-... ...+.+++..-+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999975322 334555555544444445554
No 339
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.87 E-value=0.52 Score=49.62 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred CceEEEeccchhhhccCCh-----hHHHHHHHhcCCC-CcEEEEeccccHHHHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMGFE-----PQITRIVQNIRPD-RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~-----~~i~~il~~~~~~-~q~il~SAT~~~~~~~l~~~ 668 (1112)
.-++|||||||.++..... +.+...+...+.. ..++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 4579999999988765433 2333445544444 3455555554 444444443
No 340
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.81 E-value=1.5 Score=52.43 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=28.3
Q ss_pred CceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l 665 (1112)
.+++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999876432 22334445544433 345555555566555444
No 341
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.79 E-value=0.9 Score=52.75 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=24.6
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
......+|||||+|.|-. .-...+.+++...+....+|++|..
T Consensus 138 ~~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ccCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 345678999999998742 2223444445544444444554444
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.77 E-value=0.82 Score=54.65 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=31.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..+... .. .+.++|++.- .+-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~-a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARL-AA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 4567888999999997544444433 22 2456788764 44456665554443
No 343
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.73 E-value=1 Score=52.51 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.1
Q ss_pred EEEEcCCCChHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
+|+.||.|+|||..+.+
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976544
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.72 E-value=0.33 Score=52.92 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQI 556 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~ 556 (1112)
.|.-+++.|++|+|||...+-.++..+.. .+..+++++ |..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHHH
Confidence 45668889999999996544444443332 155677777 444454443
No 345
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.71 E-value=1.1 Score=53.36 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHHc------C----CCEEEEcCCCChHHHHHH-HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 489 KPMPIQAQALPVIMS------G----RDCIGVAKTGSGKTLAFV-LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~------g----~dvii~a~TGsGKT~~~l-lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.+-|+|.-++..|+- | +-.+|..+-+-|||..+. +.+...+... ..+....|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 456999999998882 2 236777788889997444 3333333332 34677899999999888888
Q ss_pred HHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh
Q 001261 558 SDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~ 635 (1112)
..++..+.... +... ..+... ..|++.--...+..+..... ..+-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~-~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPN-TVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCC-cccCCCcceEEEehhhhhcCHH--
Confidence 88777655433 1100 000100 11222211122233333222 2233467899999999865432
Q ss_pred hHHHHHHHhc--CCCCcEEEEec
Q 001261 636 PQITRIVQNI--RPDRQTVLFSA 656 (1112)
Q Consensus 636 ~~i~~il~~~--~~~~q~il~SA 656 (1112)
..+..+..-+ +++.+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 4444444433 45666666554
No 346
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.70 E-value=1.9 Score=46.77 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..++..+. +|..|+++.- .+-..++...+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--------QGKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--------CCCEEEEEEc-CCCHHHHHHHHHHC
Confidence 456888899999999765555554432 2556777663 23334555555443
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.67 E-value=0.4 Score=49.73 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+-.+.++++.|++|+|||..+...+...+.. |..|+++ ++.+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeEe-ecCceeccc
Confidence 3467889999999999998655444433332 4556664 555665543
No 348
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.59 E-value=1.3 Score=54.73 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.++||||+|+|....|. .+.+++...+....+ +|.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~f-IL~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKF-VLATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEE-EEEECCchh
Confidence 46889999999998644332 233334433333334 444454433
No 349
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.55 E-value=2 Score=52.79 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.1
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.|+.|+|||+++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766544
No 350
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.47 E-value=0.92 Score=55.41 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=23.8
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.++||||+|.|....+ ..+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998764322 23444455544445444443
No 351
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.46 E-value=0.98 Score=55.02 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=79.7
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc--eEEEEeCCCC
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV--RCVPVYGGSG 579 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i--~~~~~~gg~~ 579 (1112)
...+-.++..|=-.|||+... +++..+... -.|-.+++++|.+..+..++.++..++..+.. .+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 345667888888999998655 555444321 13778999999999999999999987764311 1111222 11
Q ss_pred hHHHHHHHhcC--CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEec
Q 001261 580 VAQQISELKRG--TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSA 656 (1112)
Q Consensus 580 ~~~~~~~l~~~--~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SA 656 (1112)
+ .-.+..| ..|.++|-. ..+.++ =..+++||||||+-+-+. .+..++-.+ ..+.++|++|.
T Consensus 325 I---~i~f~nG~kstI~FaSar------ntNsiR---GqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS 388 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASSH------NTNGIR---GQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSS 388 (738)
T ss_pred E---EEEecCCCccEEEEEecc------CCCCcc---CCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEec
Confidence 1 0011122 244554210 111111 125789999999987643 333333222 13788999998
Q ss_pred cccH
Q 001261 657 TFPR 660 (1112)
Q Consensus 657 T~~~ 660 (1112)
|-..
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8654
No 352
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.45 E-value=0.39 Score=58.98 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH-HHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH-SDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~-~~~~~~~~ 565 (1112)
..+|+|.+.+.++-.. +.|+++..+-+|||.+.+..+...+... ...+|++.||..+|..+. ..|..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5679999988887754 5788899999999996555444333322 234689999999999876 34444443
No 353
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.43 E-value=0.52 Score=59.24 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=53.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----C-CCeee-ecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----G-YPCLS-LHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g-~~~~~-ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.+++|.+||..-+.++++.|.+. + +.+.. |||.|+..++..+++.|.+|.++|||+|+.+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 4578999999999999999998765 2 44444 99999999999999999999999999997553
No 354
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.41 E-value=1.6 Score=44.79 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=65.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+.+.--.|=|||++++--+++.+ +.|.+|+|+-=... .-.+.++..+...-++.+.. .|.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKG--GRYSGELKALKKLPNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS----SS--HHHHHHGGGT--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEE--cCCcccccCCC
Confidence 44556788999999888888763 56788888753322 01112333222211233221 12111000000
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHH
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEI 664 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~ 664 (1112)
-. .+ .......+..... ...-..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..
T Consensus 74 ~~--~~--~~~~~~~~~~a~~----~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 74 EE--ED--RAAAREGLEEAKE----AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp HH--HH--HHHHHHHHHHHHH----HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred cH--HH--HHHHHHHHHHHHH----HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 00 00 0000111111111 122356899999999998888865 45777788777777788888888887765
Q ss_pred HH
Q 001261 665 LA 666 (1112)
Q Consensus 665 l~ 666 (1112)
.+
T Consensus 146 ~A 147 (172)
T PF02572_consen 146 AA 147 (172)
T ss_dssp H-
T ss_pred hC
Confidence 54
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.40 E-value=1.3 Score=49.01 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-++|.|++|+|||+..+..+++.+. .|..+++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 3566888999999999755544444332 255778877
No 356
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=0.79 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|++||.|+|||+++.+ +...+
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 59999999999986543 34444
No 357
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.30 E-value=1.2 Score=53.65 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
+|+.||+|+|||+.+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976554
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.19 E-value=1.6 Score=55.54 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=27.0
Q ss_pred eEEEeccchhhhccCC----hhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 619 TYLVMDEADRMFDMGF----EPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 619 ~~vViDEah~~~~~gf----~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.+|+|||+|.++..|- ...+..++..+-....+.++.||-++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 5899999999876542 1233344443333455777777766553
No 359
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.16 E-value=0.19 Score=52.06 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCC-CcEEEEecc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSAT 657 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~-~q~il~SAT 657 (1112)
....++++||...-+|......+..++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456899999999888877666676666665433 556665544
No 360
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.15 E-value=0.84 Score=55.39 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
..+.++||||+|+|....| ..+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999998764333 33445555555555444433
No 361
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.13 E-value=0.5 Score=54.76 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
+...|+.-+.+++.||.|.||+|||.+..
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvTLq 37 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVTLQ 37 (502)
T ss_pred CceecChhhccccceeeccCCCCceehHH
Confidence 34456777889999999999999997643
No 362
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.06 E-value=0.61 Score=53.23 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCC-EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 504 GRD-CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 504 g~d-vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
... +|+.||.|+|||.++.. +...+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~-lA~~l~~ 50 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA-LAKELLC 50 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH-HHHHHhC
Confidence 345 89999999999976544 4444443
No 363
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.02 E-value=1.2 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.++++|++|||||. +++-+|.++..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc
Confidence 68899999999995 56666666444
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.02 E-value=0.72 Score=54.05 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=26.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.....++||||+|+|.... ...+.+++..-++. -++++++|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHH
Confidence 3467899999999985432 23445555543334 445555554433
No 365
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.00 E-value=1.2 Score=54.75 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=25.5
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.+|||||+|+|....| ..+.+++...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 45688999999998864332 23444555444444344433 5443
No 366
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.97 E-value=2.5 Score=54.01 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
..++|++|++|+|||...-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 358999999999999764433
No 367
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.96 E-value=0.87 Score=60.45 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=64.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCCCCCccEEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLDVKELELVI 787 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlDi~~v~~VI 787 (1112)
.+.++||.|||..-|.+++..|... ++.+..++|..+..++..++..+.+|..+|||+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999998888753 56788899999999999999999999999999996 444557778888888
Q ss_pred E
Q 001261 788 N 788 (1112)
Q Consensus 788 ~ 788 (1112)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 368
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.92 Score=51.32 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.||.+||.|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999974
No 369
>CHL00181 cbbX CbbX; Provisional
Probab=90.86 E-value=1.1 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
|.++|+.|++|+|||..+-+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999865543
No 370
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.84 E-value=1.8 Score=53.35 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+-.|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998655443
No 371
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.74 E-value=0.89 Score=50.81 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.+|+.||.|+|||..+-
T Consensus 164 SmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR 180 (554)
T ss_pred ceEEecCCCCchHHHHH
Confidence 68999999999997543
No 372
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.72 E-value=1.3 Score=45.16 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=26.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+.++|||+||.|... -...+.+++..-+.+..+||+|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46889999999987532 3445555666655556555555443
No 373
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=1.1 Score=55.58 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=25.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.++||||+|+|.... ...+.+++..-++..- ++|.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~-fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVK-FIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeE-EEEEeCChh
Confidence 4578899999999875422 2344445554444443 334445443
No 374
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.63 E-value=2.2 Score=55.51 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=25.5
Q ss_pred ceEEEeccchhhhccCChh---HHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 618 VTYLVMDEADRMFDMGFEP---QITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~---~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
-.+|+|||+|.++..|... ....++...-....+.++.||-+...
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 4699999999987533221 12233332223345666777765544
No 375
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.46 E-value=0.28 Score=59.31 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=62.9
Q ss_pred HHHhhcCCccEEEecCcccccCCCCCccEEEE--------eCCCCCHhHHHHHhcccCCCCCc-cEEEEEe-cC--CccC
Q 001261 757 ISDFKSNVCNLLIATSVAARGLDVKELELVIN--------FDAPNHYEDYVHRVGRTGRAGRK-GCAITFI-SE--EDAK 824 (1112)
Q Consensus 757 ~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~-~~--~d~~ 824 (1112)
-+.|.+|...|-|-+.+++.||-+..-..|+| +.+|||....+|..||+.|..+. +.-|+|+ +. .+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 36899999999999999999999887665554 88999999999999999998763 4445544 32 4667
Q ss_pred chHHHHHHHhhcc
Q 001261 825 YSPDLVKALELSE 837 (1112)
Q Consensus 825 ~~~~i~~~l~~~~ 837 (1112)
++..+.+.|+.-+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776543
No 376
>PRK04328 hypothetical protein; Provisional
Probab=90.40 E-value=1.2 Score=48.80 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=33.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+.. |..+++++ +.+-..++...+..|
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 35678889999999997655555554432 55667765 444455555555554
No 377
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.34 E-value=3.3 Score=48.06 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++.+|=-|||||++..-.+. ++.. .+.++++++ ..|.-|. +.++.++...++.+.....+. .+..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk-------~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~-~Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKK-------KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEK-DPVEI 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHH-------cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCC-CHHHH
Confidence 67789999999987554433 3333 255666665 3344443 667777777787766552222 12211
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.. ..+.. .....+++||||=|-|+- +......+..|-..++|+--++++=|++-....
T Consensus 171 ak----------------~al~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 171 AK----------------AALEK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred HH----------------HHHHH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 10 01111 123346677777777542 333456677788888888888888888877776
Q ss_pred HHHHHhcC
Q 001261 664 ILARKVLN 671 (1112)
Q Consensus 664 ~l~~~~~~ 671 (1112)
..+..|-.
T Consensus 230 ~~A~aF~e 237 (451)
T COG0541 230 NTAKAFNE 237 (451)
T ss_pred HHHHHHhh
Confidence 66666543
No 378
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.21 E-value=1.8 Score=49.70 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~ 525 (1112)
+|+|...+..+.. + +-+|+.|+.|.||+..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5778777777664 2 357899999999997654443
No 379
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.18 E-value=3.3 Score=51.43 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|++|+.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999765543
No 380
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.15 E-value=3.9 Score=49.42 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 491 t~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|-.|..|+-.++. .--+-+.|.-|-||+.+..+.+...+.... -.+.|..|.-+-..-++.-+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy-------snIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY-------SNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc-------ceEEEcCCChHHHHHHHHHHHcc
Confidence 4567777655442 234667799999999998888877765421 12455668876655444433332
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhc---CC------------eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKR---GT------------EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~---~~------------~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
+..+++.-..- .+-+..... .+ -|=+..|. ....|....+||||||-.
T Consensus 328 fDaL~Yqeh~D------y~iI~s~np~fkkaivRInifr~hrQtIQYi~P~-----------D~~kl~q~eLlVIDEAAA 390 (1011)
T KOG2036|consen 328 FDALEYQEHVD------YDIIQSTNPDFKKAIVRINIFREHRQTIQYISPH-----------DHQKLGQAELLVIDEAAA 390 (1011)
T ss_pred hhhhcchhhcc------hhhhhhcChhhhhhEEEEEEeccccceeEeeccc-----------hhhhccCCcEEEechhhc
Confidence 22222211100 000111000 00 12222222 112456788999999997
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+- .+.++.++ ...+|+|+.|+.
T Consensus 391 IP----Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 391 IP----LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred CC----HHHHHHhh-----cceeEEEeeccc
Confidence 63 56666665 345888998875
No 381
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.15 E-value=1.1 Score=55.99 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=77.2
Q ss_pred cccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 695 RPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
...+.|....+.++......| ++||.++-+.....+...|.. .|.++..+|++++..+|..+.....+|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 445677788888888777666 899999999988888888876 489999999999999999999999999999999995
Q ss_pred cccccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
.+- =+-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 442 245677777774
No 382
>PF05729 NACHT: NACHT domain
Probab=90.12 E-value=2.9 Score=42.12 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++|.|+.|+|||+. +..++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 378899999999975 4445545444
No 383
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.01 E-value=1.1 Score=54.73 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCccE
Q 001261 717 ILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
+||++||++-|.+++..+... ++.++.++||++...+...+. .| .+||||| +.+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 567899999999877765444 46 9999999 466666 89999999
Q ss_pred EEE
Q 001261 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 985
No 384
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.00 E-value=0.4 Score=57.70 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+.||.+.+..+. .|+-.|+-+|||+|||+..+-.++..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 78999998887665 7898999999999999988777776654
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.97 E-value=1.8 Score=50.37 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|.-+++.|++|+|||+..+..+. .+.. .+..+|++.-. +-..|+...+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK-------RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh-------cCCeEEEEECC-cCHHHHHHHHHH
Confidence 45678889999999975444433 3222 23467777643 334565444444
No 386
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.93 E-value=1.1 Score=52.66 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=30.6
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.+--....+.|.. +.+..|.-++...+ -..+.+|+.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 33567777655555554443 22222222222111 23578999999999999753
No 387
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.93 E-value=1.9 Score=48.82 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCceEEEeccchhhhccC--ChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g--f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+..-+||+|-|+.+-|++ ..+.+.++-..++.+.-.|+||+++++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 456799999999998887 3444555545555555568899998765
No 388
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.83 E-value=0.54 Score=54.48 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=31.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.++.++|+++.+++.+. ..+..+|++|+||||||+. +..++.++..
T Consensus 128 ~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 128 DIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3446777777775543221 2344688999999999964 5667777654
No 389
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=89.79 E-value=0.21 Score=58.00 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=4.3
Q ss_pred EEEcCCCCh
Q 001261 508 IGVAKTGSG 516 (1112)
Q Consensus 508 ii~a~TGsG 516 (1112)
+|+|-||-|
T Consensus 435 ~V~~~~GkG 443 (752)
T KOG0670|consen 435 EVQGYTGKG 443 (752)
T ss_pred EEEeccccc
Confidence 444555544
No 390
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.76 E-value=2.2 Score=48.81 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~l 526 (1112)
+|+|...|..+.. + +-+|+.||.|+|||..+...+-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 5788888887763 3 2488999999999976554433
No 391
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.71 E-value=1 Score=50.52 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.++++.|++|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997653
No 392
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.71 E-value=2.1 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.||.|+|||+++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998665443
No 393
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.67 E-value=0.62 Score=48.12 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.++.||++||||..++.-+.+. .. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~-~~-------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRY-EI-------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HH-------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHH-Hh-------CCCeEEEEEecc
Confidence 5788999999998655444333 22 266788988853
No 394
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.63 E-value=2.6 Score=48.78 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=62.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH----HHHHHHHhhh-cCceEEEEeCCCChHH
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI----HSDIRKFAKV-MGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~----~~~~~~~~~~-~~i~~~~~~gg~~~~~ 582 (1112)
|+.++.|+|||.+.++.++.++...+. +..++++ ||..-+... ...+..+... +.+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE--
Confidence 577899999999988888887776431 2345555 665554442 2233333333 12222211111100
Q ss_pred HHHHHhcCCeEEEeCchH--HHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc--
Q 001261 583 QISELKRGTEIVVCTPGR--MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF-- 658 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~--L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~-- 658 (1112)
+..|..|.+.+-.. -..-+.. ..+++|||||+-.+.+..+...+...+..... ...+++|.|+
T Consensus 73 ----~~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~ 139 (384)
T PF03237_consen 73 ----LPNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNP 139 (384)
T ss_dssp ----ETTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---S
T ss_pred ----ecCceEEEEeccccccccccccc--------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCC
Confidence 13456666666331 1111111 35779999998876543333333333222222 2222444442
Q ss_pred cHHHHHHHHHhcCCC
Q 001261 659 PRQVEILARKVLNKP 673 (1112)
Q Consensus 659 ~~~~~~l~~~~~~~p 673 (1112)
......+........
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 140 GGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSHHHHHHHHHHCTS
T ss_pred CCceeeeeehhhcCC
Confidence 234444555555544
No 395
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.61 E-value=0.53 Score=54.40 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.-++++||||||||+. +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456788999999999974 4556666543
No 396
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.56 E-value=0.51 Score=52.92 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=42.1
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
..|...++-|...+-.+..++ ++|++|.||||||+. +-.++..+. ..-+++.|=-|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 345678899998888877665 999999999999973 222222211 12367777777777443
No 397
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.49 E-value=2.8 Score=54.24 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|++|+.|+|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 589999999999997543
No 398
>PHA00729 NTP-binding motif containing protein
Probab=89.32 E-value=2.2 Score=45.75 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=37.1
Q ss_pred eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-Ch----hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FE----PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 592 ~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-f~----~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..++.+...|+..+.... .....+.+||||++---+... |. ..+..+...++...+++.|...-|..+...+
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 344555555555543211 112346789999943211110 11 1223344445555667777777666666555
Q ss_pred HH
Q 001261 667 RK 668 (1112)
Q Consensus 667 ~~ 668 (1112)
+.
T Consensus 137 r~ 138 (226)
T PHA00729 137 RE 138 (226)
T ss_pred Hh
Confidence 54
No 399
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.31 E-value=0.54 Score=53.94 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..++..+.++|++|+||||||+. +-.++..+- ....++.+-.+.||.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 33455788999999999999963 444554332 133556666777764
No 400
>PHA00350 putative assembly protein
Probab=89.28 E-value=3.2 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHH-HHHHHHhc
Q 001261 507 CIGVAKTGSGKTLAFVL-PMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll-p~l~~l~~ 531 (1112)
.|+.|..|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57889999999987665 34444443
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.23 E-value=1.9 Score=46.38 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||...+..+...+. .+..|++++. .+-..++...+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~--------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK--------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 456788999999999754444444332 2556777654 34456666655554
No 402
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.21 E-value=1.1 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.|+-++++|++|+|||+. +..+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhhc
Confidence 688899999999999974 333444443
No 403
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.18 E-value=1 Score=51.62 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
++..+.++|++|+||||||+ ++-.++.++-. ..+++++=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34567899999999999996 45555655422 23455555566654
No 404
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.17 E-value=0.86 Score=49.54 Aligned_cols=88 Identities=14% Similarity=0.285 Sum_probs=61.8
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcC----CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC-CCCCcc
Q 001261 738 GYPCLSLHGAKDQTDRESTISDFKSN----VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG-RAGRKG 812 (1112)
Q Consensus 738 g~~~~~ihg~~~~~~R~~~~~~F~~g----~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g-R~G~~g 812 (1112)
++.+..++++.+... -.|.++ ...|+|+=+.++|||.++++.+..+..-+...+++.||.==.| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 456666665544322 233333 3789999999999999999999999999998888888653333 777788
Q ss_pred EEEEEecCCccCchHHHH
Q 001261 813 CAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 813 ~~i~~~~~~d~~~~~~i~ 830 (1112)
.|-+|+++.-...+..|.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 899888754444443443
No 405
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.11 E-value=5.7 Score=47.40 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh
Q 001261 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~ 588 (1112)
-+++|++..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++. .+-++.+..++|..+..+. +..+.
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 45788888878777776654 356888999999999999998887 2357888889998655433 34444
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 589 ~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.| ..|+|||. +|.++ .+|..+.+||.+..-
T Consensus 436 ~g~IwvLicTd-----ll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICTD-----LLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEehh-----hhhcc----ccccCcceEEecCCC
Confidence 44 58999993 45443 689999999996655
No 406
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.09 E-value=0.69 Score=54.54 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 491 MPIQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++.|...+..++.... +|+.||||||||+. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5788888887776543 56679999999975 5555655443
No 407
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.04 E-value=1.6 Score=49.63 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 491 t~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
+|+|...+..+. .|+ -.|+.|+.|.||+..+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 466666665544 543 57789999999997554443
No 408
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.91 E-value=5.9 Score=40.75 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 56899999999998888865 4577788888778788888888888776554
No 409
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.66 E-value=2.1 Score=49.87 Aligned_cols=71 Identities=15% Similarity=0.378 Sum_probs=53.8
Q ss_pred CCeE-EEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCC
Q 001261 714 KGKI-LIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (1112)
Q Consensus 714 ~~~v-LIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~ 782 (1112)
.|++ ||.|+|++-|.+++...++ +|+.++++||+++..++...++ -..-|+|||+ ++- -++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 3454 6778999988887665544 5899999999999888776665 3467999994 222 5889999
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
++++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 998885
No 410
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.65 E-value=1.1 Score=50.64 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999643
No 411
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.54 E-value=0.51 Score=50.70 Aligned_cols=40 Identities=10% Similarity=0.275 Sum_probs=23.7
Q ss_pred eEEEeccchhhh-c----cCChhHHHHHHHhcC-CCCcEEEEeccc
Q 001261 619 TYLVMDEADRMF-D----MGFEPQITRIVQNIR-PDRQTVLFSATF 658 (1112)
Q Consensus 619 ~~vViDEah~~~-~----~gf~~~i~~il~~~~-~~~q~il~SAT~ 658 (1112)
-+|||||+|.+. . ..+...+..++.... ....+++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999988 2 224445555555522 233455566665
No 412
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=1.6 Score=48.36 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC-cEEEEccchhH-----------HHHHHHHHHHHhhhcCce
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP-VGLIMAPTREL-----------VQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~-~~LIl~PtreL-----------a~Q~~~~~~~~~~~~~i~ 570 (1112)
.++-+|+.||+|+|||. .+-++.+++.-. ..+..+ -.||=...-.| +.++++.|..+...-+.-
T Consensus 176 ~NRliLlhGPPGTGKTS-LCKaLaQkLSIR---~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTS-LCKALAQKLSIR---TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eeeEEEEeCCCCCChhH-HHHHHHHhheee---ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 45668889999999994 566677766432 111222 23444444444 455555666666655665
Q ss_pred EEEEeCCCC------------------------hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 571 CVPVYGGSG------------------------VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 571 ~~~~~gg~~------------------------~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+++++.... .-.|+..+++-.+|+|-|..-|.+ .++.-.+|-|
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-------------siD~AfVDRA 318 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-------------SIDVAFVDRA 318 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-------------HHHHHhhhHh
Confidence 555543210 123556666666665554433322 3455678888
Q ss_pred hhhhccC
Q 001261 627 DRMFDMG 633 (1112)
Q Consensus 627 h~~~~~g 633 (1112)
|-.+..|
T Consensus 319 Di~~yVG 325 (423)
T KOG0744|consen 319 DIVFYVG 325 (423)
T ss_pred hheeecC
Confidence 8655444
No 413
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.35 E-value=1.2 Score=51.86 Aligned_cols=70 Identities=16% Similarity=0.016 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+-..|..+.-..-.|.- .|.|=.|||||...++-+.. |... +..-+++|.+-|+.|+.++...+.+|+-
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHH
Confidence 334567766555556655 56788999999865554443 3321 2355789999999999999999988874
No 414
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.26 E-value=2.1 Score=56.50 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=34.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.--+||||.+|.+.+......+..++...++...+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999886555566788888888888999888887543
No 415
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.11 E-value=5.2 Score=42.43 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+.+.|++|+|||...+..+...+. .+..++++.-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--------~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--------QGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC
Confidence 3456888999999999765544444322 2456676654
No 416
>PRK13764 ATPase; Provisional
Probab=88.03 E-value=0.95 Score=55.53 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..+|++|+||||||+ ++..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 45679999999999996 4556666654
No 417
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.99 E-value=2.7 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
..+|+.|+.|+|||..+.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 457999999999997655433
No 418
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=2.7 Score=50.40 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=32.5
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|--..+...|.. ..+..|-.++.-.|. .-..+|++||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 45789998866666555442 222333323222221 1356999999999999753
No 419
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.85 E-value=1.2 Score=55.18 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|++||.|+|||+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998665443
No 420
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.82 E-value=1.3 Score=54.18 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+.+|+.||.|+|||..+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999997655433
No 421
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.79 E-value=1.5 Score=56.16 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..+|.+.+....+...|... .+..|.-++... +...+.+|+.||+|+|||+.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788887777776665531 222211111110 112356899999999999743
No 422
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.75 E-value=1.3 Score=48.39 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCChHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~ 519 (1112)
+-.|+.+++.|+.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478899999999999996
No 423
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.72 E-value=3.3 Score=48.24 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHS 558 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~ 558 (1112)
+..+.|+|.+|+|||.+ +.-++.++... ..++.+++|-.| ...+..++.
T Consensus 175 ~gSlYVsG~PGtgkt~~-l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL-LSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CcceEeeCCCCcchHHH-HHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 46789999999999975 33234333221 224454555444 245554443
No 424
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.70 E-value=1.5 Score=51.51 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999975
No 425
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.67 E-value=0.92 Score=56.35 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..--+||||.-|++.+...-..+..++++.+++.++|+.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 33469999999999988888889999999999999999998865
No 426
>PF12846 AAA_10: AAA-like domain
Probab=87.55 E-value=1.5 Score=49.27 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.6
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
+.+++++|.||||||+.+. .++..+.. .|..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999997655 45544443 2567777777655443
No 427
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.45 E-value=4.4 Score=48.45 Aligned_cols=88 Identities=11% Similarity=0.222 Sum_probs=64.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCccE
Q 001261 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
.+||.++|++-|.++...+... ++.+.+++|+.+...+..-++ + -+.|+||| +.+..| +++..|.+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCccccceeE
Confidence 5999999999999999888775 456889999999877665543 3 37899999 445544 78888888
Q ss_pred EEE--------eCCCCCHhHHHHHhcccCC
Q 001261 786 VIN--------FDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 786 VI~--------~d~p~s~~~y~QriGR~gR 807 (1112)
||. .++-..+...++.+++.-|
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 884 2333345556666666655
No 428
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.43 E-value=4.5 Score=42.20 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=22.9
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|||||+|.|... ....+...+...++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 456789999999997542 1223444444433333 3444443
No 429
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.41 E-value=2.7 Score=51.37 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHH----HHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDA----LFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA- 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~----l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~- 774 (1112)
-+..++..+.....+.++.+-+||---|++ +..+|...|+.+..+.|.+....|..++....+|.++|+|.|-++
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 345566666665566799999999755554 555555669999999999999999999999999999999999765
Q ss_pred cccCCCCCccEEEE
Q 001261 775 ARGLDVKELELVIN 788 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~ 788 (1112)
...+++.++-+||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 57899999999985
No 430
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.40 E-value=3.6 Score=44.39 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=29.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.|.-+++.|++|+|||+.++..+...+.. +..+++++- .+.+.++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 45678889999999997555444433321 345666653 3334444444333
No 431
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.39 E-value=4.7 Score=46.28 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
++|+|...|..+. +|+ -.|+.|+.|+||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 4566766666554 443 57899999999997554433
No 432
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=7.3 Score=42.76 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=35.0
Q ss_pred HHHHcCC-----CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 499 PVIMSGR-----DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 499 ~~il~g~-----dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|.++.|+ .+|+.||.|+||+. |.-++.. ....+++-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT----------EAnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT----------EANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh----------hcCCceEEeehHHHHHHHhccHHHHH
Confidence 5556664 48889999999995 3333321 01145777888888887766555543
No 433
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.08 E-value=3.4 Score=53.68 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.++|++|++|+|||...-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 434
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.92 E-value=2.8 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++|++|++|+|||..+-..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999976544333
No 435
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=86.82 E-value=0.47 Score=63.24 Aligned_cols=94 Identities=34% Similarity=0.467 Sum_probs=75.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCC-----------HHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 716 KILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKD-----------QTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~-----------~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
..||||+....+..++..+... -+.+..+.|.+. +-.+..++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 3489999888888888777664 223333444332 2235678889999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 784 ELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 784 ~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
+.||.++.|.....|+|..||+-..+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987654
No 436
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=2.2 Score=49.83 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=53.0
Q ss_pred ccCCceEEEeccchhhhccC------------ChhHHHHHHHhcCCCCcEEEEecc-ccHHHHHHHHHhcCCCeEEEEcC
Q 001261 614 NLRRVTYLVMDEADRMFDMG------------FEPQITRIVQNIRPDRQTVLFSAT-FPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~g------------f~~~i~~il~~~~~~~q~il~SAT-~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
.....++|+|||+|.++..- -...+..+.....++-++++++|| .|-.+...++..+..-++
T Consensus 242 r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~y----- 316 (428)
T KOG0740|consen 242 RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLY----- 316 (428)
T ss_pred HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceee-----
Confidence 34457889999999887422 112233333444556689999999 444555444443322221
Q ss_pred cccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHH
Q 001261 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734 (1112)
Q Consensus 681 ~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L 734 (1112)
+...+...+...+..+|... + .|-+......++...
T Consensus 317 -----------iplPd~etr~~~~~~ll~~~---~----~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 317 -----------IPLPDYETRSLLWKQLLKEQ---P----NGLSDLDISLLAKVT 352 (428)
T ss_pred -----------ecCCCHHHHHHHHHHHHHhC---C----CCccHHHHHHHHHHh
Confidence 22334455666666666653 1 133445555555544
No 437
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=86.79 E-value=2.3 Score=53.22 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.||+++-|.+++..|... ++.++.+||+.+...+...+ . ....|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 357999999999999988776653 78899999998876554433 2 4578999994 3333 478888
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 998885
No 438
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=5.8 Score=46.85 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHCCCCCCh----HHHHHHHHHHHcC--------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 471 QTGLTSKIMETIRKLNYEKPM----PIQAQALPVIMSG--------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 471 ~~~L~~~l~~~l~~~~~~~pt----~iQ~~ai~~il~g--------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
.+|.+..-++.+...|+-.-. .+=..+.-.+.+- ..+|+.||.|||||..+.-.++. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------S 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------c
Confidence 366776666666655543222 2222222222211 35899999999999654433331 2
Q ss_pred CCCcEEEEccc
Q 001261 539 DGPVGLIMAPT 549 (1112)
Q Consensus 539 ~~~~~LIl~Pt 549 (1112)
.-|.+=|+.|.
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 35777788884
No 439
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.61 E-value=2.2 Score=48.42 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|+-+++.|++|||||+.++..+. .... .+..|+++..-..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~-~~~~-------~g~~v~yId~E~~~ 95 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA-EAQK-------AGGTAAFIDAEHAL 95 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCcEEEEcccchh
Confidence 356788899999999975444444 3332 25567777554333
No 440
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.59 E-value=2.5 Score=48.02 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
++|+|...+..+. .++ -.|+.|+.|.||+..+...+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 4567766666554 443 58899999999996544333
No 441
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.56 E-value=1.3 Score=48.19 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=19.9
Q ss_pred CchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 597 Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
-|+-|..+| ++|..-+++.|||.|+|.
T Consensus 90 K~gDlaaiL-------t~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAIL-------TNLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHH-------hcCCcCCeEEEehhhhcC
Confidence 455566666 467777899999999964
No 442
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.50 E-value=3.8 Score=51.31 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=19.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001261 1068 YLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1068 yl~ie~~~~~~v~~A~~~i~~~~~e~~ 1094 (1112)
|+||-+.|..-...|+...+.+..+..
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (725)
T PRK07133 663 PKHIFAISKKLINEAKIYWKAINNTKK 689 (725)
T ss_pred cceEeeccHHHHHHHHHHHHHHHhhcc
Confidence 456666777778888887777766554
No 443
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.44 E-value=2.9 Score=50.76 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=25.3
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||+|.... ...+.+++...++...+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4568899999999875422 234555555555555555544
No 444
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.33 E-value=0.59 Score=50.07 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=29.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|-+|.+++||+.+.+. .+..+ -+|++|+|||||++. +..|+.+
T Consensus 106 ~IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhh-HHHHhcc
Confidence 34577888887766542 12223 377889999999976 4455544
No 445
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.29 E-value=3.6 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=28.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+.+-.++|+||.-.-+|......+..++..+. .+|+++..-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~ 126 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHD 126 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECC
Confidence 34567999999998777766667777776652 355555443
No 446
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=86.15 E-value=1.3 Score=36.61 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAEL 1086 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i 1086 (1112)
.++.++.+|.+.|||.|.+... + ..-.+.|.| +...|+.|+..|
T Consensus 17 ~~G~~i~~I~~~t~~~I~i~~~----------~-~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 17 KKGSNIKEIEEETGVKIQIPDD----------D-ERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp GGGHHHHHHHHHHTSEEEEEST----------T-EEEEEEEEE-SHHHHHHHHHHH
T ss_pred CCCCcHHHhhhhcCeEEEEcCC----------C-CcEEEEEEe-CHHHHHHHHhhC
Confidence 4678999999999999998332 2 445889999 999999999876
No 447
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.10 E-value=0.94 Score=48.99 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++|.|..|||||.. +.-++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47889999999974 44444
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.10 E-value=3.9 Score=49.63 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHc-----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 496 QALPVIMS-----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 496 ~ai~~il~-----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+..++. |.-+|+.|++|+|||+..+..+...+. +|..||+++ +-+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34555553 456888999999999865555544432 356778876 455567777777664
No 449
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.89 E-value=2.1 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.++|+||+-.-+|......+...+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56678899999988777766777777776665555444443
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.87 E-value=3.5 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHHHHHcC---CCEEEEcCCCChHHHH
Q 001261 497 ALPVIMSG---RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 497 ai~~il~g---~dvii~a~TGsGKT~~ 520 (1112)
.++.+... .+++++|++|||||+.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 35555533 5789999999999963
No 451
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=4.2 Score=46.32 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+++++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 452
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.75 E-value=0.65 Score=47.93 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
...+...++|||+++..|++-.......... ..-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHH
Confidence 3455567899999999887654332111112 3447999999999865
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.70 E-value=3.7 Score=52.59 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.++.+|+.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457799999999999964
No 454
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=7.2 Score=44.39 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=74.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++|=-|+|||++..-.++++ . ..|.+++++| - .|+-|. ..++..+...++.+...|.......
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~-k-------kkG~K~~LvcaDTFRagAf---DQLkqnA~k~~iP~ygsyte~dpv~-- 170 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYY-K-------KKGYKVALVCADTFRAGAF---DQLKQNATKARVPFYGSYTEADPVK-- 170 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHH-H-------hcCCceeEEeecccccchH---HHHHHHhHhhCCeeEecccccchHH--
Confidence 6678999999998766555544 2 2356666666 2 343333 4455544445555544333222111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
|+.-| +.. +.-.++++||+|=.-|.-. .+....+..+...+.|+--++++-|++-...+
T Consensus 171 ----------ia~eg-----v~~-----fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 171 ----------IASEG-----VDR-----FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred ----------HHHHH-----HHH-----HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 11111 000 1223466777776665332 22445677788888898888889999887777
Q ss_pred HHHHHhc
Q 001261 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~~ 670 (1112)
..++.|-
T Consensus 231 ~Qa~aFk 237 (483)
T KOG0780|consen 231 AQARAFK 237 (483)
T ss_pred HHHHHHH
Confidence 6666654
No 455
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=85.62 E-value=16 Score=41.71 Aligned_cols=232 Identities=13% Similarity=0.159 Sum_probs=113.0
Q ss_pred CEEEEc---CCCChHHHHHHHHHHHHHhcCCC----CCCCCCC----cEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 506 DCIGVA---KTGSGKTLAFVLPMLRHIKDQPP----VAAGDGP----VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a---~TGsGKT~~~llp~l~~l~~~~~----~~~~~~~----~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-||.+| -=|+|||- +.+.++..+..+.. +..|+|. ..+++.+.. -+.++-++---++..++ +.++
T Consensus 36 pVIsVGNltvGGTGKTP-~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~ 111 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTP-LVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVI 111 (326)
T ss_pred cEEEEcccccCCCCchH-HHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEE
Confidence 466665 34899995 46666666665411 1223321 255666655 56666666666666666 2223
Q ss_pred eCCCChHHHHHHHhc--CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH--HHHHHHhcCCCCc
Q 001261 575 YGGSGVAQQISELKR--GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ--ITRIVQNIRPDRQ 650 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~--~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~--i~~il~~~~~~~q 650 (1112)
+| .....-+..+.. +++|||+-.|.= + ..--.++.+|++|-.+-+.+-...+. +..-+..+. ..-
T Consensus 112 V~-~dR~~~~~~~~~~~~~dviilDDGfQ------h---~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~-rAD 180 (326)
T PF02606_consen 112 VG-PDRVAAARAALKEFPADVIILDDGFQ------H---RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALK-RAD 180 (326)
T ss_pred Ee-CcHHHHHHHHHHHCCCCEEEEcCCcc------c---ccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhC-ccc
Confidence 33 333333333222 478888876621 1 11235788899997553332111110 111111121 123
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l 730 (1112)
+|+++.................|+....-.. ..+ .... ... .....+.+++.|| ....-+.+
T Consensus 181 ~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~---~~~~-~~~---------~~~l~~~~v~a~s-GIg~P~~F 242 (326)
T PF02606_consen 181 AVIVTGCDASDPAIEKAIRPGKPIFSARLKP----EGL---RNLN-TGS---------IEPLKGKPVLAFS-GIGNPERF 242 (326)
T ss_pred EEEEcCCCcchhHHHHhhhcCCceEEEEEEe----ccc---cccc-ccc---------hhhccCCeeEEEE-EcCChHHH
Confidence 4555544332222111111233332110000 000 0000 000 0012345676666 56666777
Q ss_pred HHHHHhcCCCee-----eecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 731 FRDLLKHGYPCL-----SLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 731 ~~~L~~~g~~~~-----~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
...|...|+.+. .=|-..+..+-..+...++... +||+|.
T Consensus 243 ~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 243 FDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 788888877655 2377788888888877776544 889983
No 456
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.57 E-value=1.9 Score=49.82 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=19.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..++++|+||||||+. +..++.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhC
Confidence 355688999999999975 444555543
No 457
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.55 E-value=3.1 Score=50.26 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
.|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997655433
No 458
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.49 E-value=7.6 Score=44.10 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=23.9
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+... ....+..++....+...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 3579999999987542 2334555666655555555544
No 459
>PRK05973 replicative DNA helicase; Provisional
Probab=85.36 E-value=1.3 Score=47.90 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||... .+.-+..|.-++|.|++|+|||+..+..+...+. +|..++|++- -+-..|+...+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 4455222 3333445667888999999999765555554432 2556777763 22245665666554
No 460
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.34 E-value=4.9 Score=50.06 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=25.3
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+....+|||||+|.|.... ...+..++...+... +++|.+|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeCC
Confidence 45578899999999985422 233444555443333 44455553
No 461
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.30 E-value=4.8 Score=42.37 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v 783 (1112)
..++||+|++..-+..+...+... ++.+..++|+.+.......+. +...|+|+|.- +. .-++++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999988887776554 678889999998766543332 66789999942 22 22567778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88774
No 462
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=85.26 E-value=3.5 Score=53.40 Aligned_cols=90 Identities=9% Similarity=0.159 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-
Q 001261 699 DRFLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS- 772 (1112)
Q Consensus 699 ~k~~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~- 772 (1112)
.|....+...-. ...+.+|.|+|||.--|++-++.|.+ .++++..+.--.+..+...+++..++|.++|||.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 455444443333 33456899999998888777777765 467788899999999999999999999999999994
Q ss_pred cccccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
++..+|-+.++-+||.
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 6778999999999986
No 463
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=85.23 E-value=0.97 Score=54.71 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.+++++|+||||||..|++|.+.. . ..-++|+=|--+|+......++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~ 91 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRK 91 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHH
Confidence 479999999999999999997732 1 1145677788888765444333
No 464
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.19 E-value=11 Score=39.75 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=71.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHHHHHHHHHhhhc---CceEEEE-eCCC
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQIHSDIRKFAKVM---GVRCVPV-YGGS 578 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~~~~~~~~~~~~---~i~~~~~-~gg~ 578 (1112)
=+++-|+.|+|||+.....++-.+. ++..+.+++ |+++...|+...=-.+...+ .+.++.+ ..+.
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~--------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLM--------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh--------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 4778899999999754444443332 355667766 66777666643211111111 1111111 0111
Q ss_pred ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc---CCCCcEEEEe
Q 001261 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI---RPDRQTVLFS 655 (1112)
Q Consensus 579 ~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~---~~~~q~il~S 655 (1112)
..... +-..+++.+... ....+-++||||=...+.-..-...+..++..+ -..-.+|++|
T Consensus 102 ~~~~~-------------~~~~~L~~l~~~----~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilT 164 (235)
T COG2874 102 NWGRR-------------SARKLLDLLLEF----IKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILT 164 (235)
T ss_pred ccChH-------------HHHHHHHHHHhh----HHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11100 011233333322 224566799999988665433233444444433 3456799999
Q ss_pred ccc---cHHHHHHHHHhcCCCe
Q 001261 656 ATF---PRQVEILARKVLNKPV 674 (1112)
Q Consensus 656 AT~---~~~~~~l~~~~~~~p~ 674 (1112)
+.+ +..+...++..+.-.+
T Consensus 165 vhp~~l~e~~~~rirs~~d~~l 186 (235)
T COG2874 165 VHPSALDEDVLTRIRSACDVYL 186 (235)
T ss_pred eChhhcCHHHHHHHHHhhheeE
Confidence 874 3444444444444333
No 465
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.17 E-value=0.33 Score=49.80 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
.+++.|+.|+|||+. +.-++..+.... -+.+=|++| .++ -....|+.++.+..|.... +
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~------~~v~Gf~t~evr~-----------~g~r~GF~iv~l~~g~~~~--l 60 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKG------LPVGGFYTEEVRE-----------NGRRIGFDIVDLNSGEEAI--L 60 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTC------GGEEEEEEEEEET-----------TSSEEEEEEEET-TS-EEE--E
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccC------CccceEEeecccC-----------CCceEEEEEEECcCCCccc--c
Confidence 378999999999975 455666665421 122233333 221 1112234444432221000 0
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccc--cCCceEEEeccchhhh--ccCChhHHHHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITN--LRRVTYLVMDEADRMF--DMGFEPQITRIVQ 643 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~--l~~i~~vViDEah~~~--~~gf~~~i~~il~ 643 (1112)
........+-++.+....+.+..-...... +...++|||||+=.|- ..+|...+..++.
T Consensus 61 a~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 61 ARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp EETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred ccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 000011233444444443444332222222 2567899999999763 3446666666665
No 466
>PHA00012 I assembly protein
Probab=85.16 E-value=7.8 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++.|..|||||+.++..++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5788999999999888777666554
No 467
>PRK07413 hypothetical protein; Validated
Probab=84.97 E-value=6.5 Score=45.43 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..++.
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 56899999999998888855 45777888888888888888888888776654
No 468
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.91 E-value=1.3 Score=56.87 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
..++|||+.-....+.+...+...++.+...-++- +-...+..|++ .-.+||-+...+-|+|+-+..+|+..++-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 35899999999888888888887777665544433 33556677766 444677888899999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCcc
Q 001261 794 HYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g 812 (1112)
++.+-.|.+||+.|.|++-
T Consensus 1297 N~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred CchHHHhhhhhhhhccccc
Confidence 9999999999999999764
No 469
>PRK14701 reverse gyrase; Provisional
Probab=84.91 E-value=4 Score=56.19 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=53.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.++||.+||+.-+.+++..|... ++.+..+||+++..++..++..+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999998888763 467789999999999999999999999999999964
No 470
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=84.85 E-value=14 Score=46.38 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=66.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcC--------CccEEEecCcccccCCC
Q 001261 716 KILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSN--------VCNLLIATSVAARGLDV 780 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~~~~~~F~~g--------~~~VLVaT~v~~~GlDi 780 (1112)
.+|||+++....+.+...+... ++.-+.+ .-.+...-..++..|.++ ..-+.||-.-+++|||+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999998888885555432 2222222 222334445566666533 33466788899999999
Q ss_pred CC--ccEEEEeCCCCC------------------------------Hh--------HHHHHhcccCCCCCccEEEEEecC
Q 001261 781 KE--LELVINFDAPNH------------------------------YE--------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 781 ~~--v~~VI~~d~p~s------------------------------~~--------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
.+ ...||..++|.- .+ ...|.+||+-|.-+.=.+++|++.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeec
Confidence 76 778898888641 11 225889999997665445556654
No 471
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=84.59 E-value=1.8 Score=49.60 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997544
No 472
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.43 E-value=1.7 Score=49.39 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|+-+.+.||.|||||+.++..+... .. .+..|+++.+--.+-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~-~~-------~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA-QK-------LGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCCEEEECccccHH
Confidence 5678889999999996544444433 32 256788887655444
No 473
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=84.22 E-value=2.8 Score=46.19 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=24.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
.+|.|||||||+- ++--++.. ..+ ....-.|++|+|+...+
T Consensus 90 ~~VYGPTG~GKSq-LlRNLis~----~lI-~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-LLRNLISC----QLI-QPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-HHHHhhhc----Ccc-cCCCCceEEECCCCCCC
Confidence 5667999999993 34333322 111 12234688999987553
No 474
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.10 E-value=1.4 Score=49.92 Aligned_cols=40 Identities=28% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCChHHHHH-HHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 488 ~~pt~iQ~~-ai~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
..+++.|.. .|-++..+++++++|+||||||.. +.+++..
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~ 166 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDF 166 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHh
Confidence 345566654 455666889999999999999964 5555544
No 475
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.04 E-value=0.4 Score=47.78 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
..+++.|++|+|||+. ++-+...+.... -..+=|++|- +..=.+..|++++.+..|... ++
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g------~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~--~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKG------YKVGGFITPE----------VREGGKRIGFKIVDLATGEEG--IL 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcC------ceeeeEEeee----------eecCCeEeeeEEEEccCCceE--EE
Confidence 3578899999999974 555555555431 1123356662 223334456777666543211 00
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCc-c-cccCCceEEEeccchhhh--ccCChhHHHHHHHh
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGK-I-TNLRRVTYLVMDEADRMF--DMGFEPQITRIVQN 644 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~-~-~~l~~i~~vViDEah~~~--~~gf~~~i~~il~~ 644 (1112)
... .....-|+-++...+.+..-... + -.+..-++|||||.--|- ...|...+..++..
T Consensus 67 a~~-~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 ARV-GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEc-CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 00223344444443333211000 0 013345899999999653 33355566655544
No 476
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=83.94 E-value=7.6 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhcC-CCeeeecCCC
Q 001261 723 SQEKCDALFRDLLKHG-YPCLSLHGAK 748 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g-~~~~~ihg~~ 748 (1112)
|+.-++.|+.+|+..+ +.+...|-++
T Consensus 257 SV~iae~La~~l~~~~~~~v~v~HRd~ 283 (286)
T COG1660 257 SVYIAEQLAEYLRARGKYNVQVRHRDL 283 (286)
T ss_pred hHHHHHHHHHHHHhccCceEEEeehhh
Confidence 5778899999998874 4788888654
No 477
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.88 E-value=8.9 Score=47.90 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc------ccCCCCCccEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA------RGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~------~GlDi~~v~~V 786 (1112)
..+.+||.+|+..-+......|...|+.+..+||+++..++..++..+..|..+||++|+--- .-+....+.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 357899999999999988899999999999999999999999999999999999999884221 22344567777
Q ss_pred EE
Q 001261 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 132 Vi 133 (591)
T TIGR01389 132 AV 133 (591)
T ss_pred EE
Confidence 74
No 478
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=83.80 E-value=0.84 Score=53.66 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=31.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+++++|+||||||.++++|.+.. . +..++|+=|--+|.....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~ 42 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTS 42 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHH
Confidence 47899999999999999887642 1 234677778888875443
No 479
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=83.78 E-value=1.9 Score=50.81 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=54.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc----CCCCC
Q 001261 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG----LDVKE 782 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G----lDi~~ 782 (1112)
-.|||.+|++-|.+++..|... ++.+..|.|||....+++++.. ...|+|||+ ++..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3799999999999999999763 8999999999999999988876 678999994 22221 14556
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.++|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 777664
No 480
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=83.77 E-value=2.9 Score=51.18 Aligned_cols=229 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred CCChHHHHHHHHHHHc--------CC-C-EEEE--cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 488 EKPMPIQAQALPVIMS--------GR-D-CIGV--AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~--------g~-d-vii~--a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
..++..|.+++-...+ |. - .||- |..|-|.|++-+ |+...+. -..++|.+.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk-------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK-------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc-------ccceeEEEEeccccccc
Confidence 3566788888766543 32 2 3333 345666676433 3332222 13568888887778766
Q ss_pred HHHHHHHHhhhcCceEEEEe----CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc-ccc---------CCceEE
Q 001261 556 IHSDIRKFAKVMGVRCVPVY----GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI-TNL---------RRVTYL 621 (1112)
Q Consensus 556 ~~~~~~~~~~~~~i~~~~~~----gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~-~~l---------~~i~~v 621 (1112)
....+..+.. .+|.|..+. +..+..+. ...+ -.||+||+..|+-.....+++. +-| +-=++|
T Consensus 334 AERDL~DigA-~~I~V~alnK~KYakIss~en-~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccccccccccc-CCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 6666666433 345554331 11110000 1111 3699999988865443221111 111 112689
Q ss_pred Eeccchhhhcc---C------ChhHHHHHHHhcCCCCcEEEEeccc---cHHHHHHHHHhcCCCeEEEEcCcccccCCcc
Q 001261 622 VMDEADRMFDM---G------FEPQITRIVQNIRPDRQTVLFSATF---PRQVEILARKVLNKPVEIQVGGRSVVNKDIT 689 (1112)
Q Consensus 622 ViDEah~~~~~---g------f~~~i~~il~~~~~~~q~il~SAT~---~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~ 689 (1112)
|+||||+-.+. + -+..+..+-+.+ |+..+|.-|||= |.++..+.+..+-.+ ..
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATGAsEPrNMaYM~RLGlWGe--------gt------ 474 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATGASEPRNMAYMVRLGLWGE--------GT------ 474 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccCCCCcchhhhhhhhccccC--------CC------
Confidence 99999975441 1 233444444445 556689999983 444443333222111 00
Q ss_pred EEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 690 QLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 690 q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
.-.-|..++..+....-+.--||-+..+-....++..|.-.|+.+.+-.=.|+.+
T Consensus 475 -------af~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQLSFkgVsFrieEv~ls~e 529 (1300)
T KOG1513|consen 475 -------AFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFRIEEVPLSKE 529 (1300)
T ss_pred -------cCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhccccCceEEEEecccCHH
Confidence 0112333344433321112336666777777777777776666655444444443
No 481
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=83.76 E-value=9 Score=42.69 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC--CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 493 IQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV--AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 493 iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~--~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+|-+.|+-++ .|..+|+.|+.|.|||+..+...+.....+.-+ ...+..++|||.--- --..+...++.++..+++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl-~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL-YREDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc-ChHHHHHHHHHHHHHcCC
Confidence 4455565544 566778889999999987655444332221111 111233566665211 113445667777777766
Q ss_pred e
Q 001261 570 R 570 (1112)
Q Consensus 570 ~ 570 (1112)
.
T Consensus 156 s 156 (402)
T COG3598 156 S 156 (402)
T ss_pred C
Confidence 4
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.60 E-value=4.8 Score=41.55 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+-.++|+||.-.-+|......+..++..+... .+|+++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888877677777777766543 35555444
No 483
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.58 E-value=2.2 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
...++|+.||||+|||+.+-
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 34679999999999997543
No 484
>PRK09354 recA recombinase A; Provisional
Probab=83.54 E-value=3.1 Score=47.69 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|+-+.|.|++|||||+..+..+.... . .|..|++|..-..+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~-~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEECCccchH
Confidence 56788899999999976555444432 2 256778887655444
No 485
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=83.52 E-value=18 Score=41.39 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+-++|+.|+|||+ ++-.++..+.
T Consensus 59 igi~G~~GaGKST-l~~~l~~~l~ 81 (332)
T PRK09435 59 IGITGVPGVGKST-FIEALGMHLI 81 (332)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHH
Confidence 5556999999996 3444444433
No 486
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.47 E-value=4 Score=50.23 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
-+|+.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865543
No 487
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=83.47 E-value=2.3 Score=35.53 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=35.7
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~ 1087 (1112)
..+.++.+|++.|||.|.+ +. .| .+.|.|++...|+.|+..|.
T Consensus 19 kgG~~ik~I~~~tg~~I~i-----~~-----~g----~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 19 PGGKTIKKIIEETGVKIDI-----ED-----DG----TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred CCchHHHHHHHHHCCEEEe-----CC-----CC----EEEEEeCCHHHHHHHHHHhC
Confidence 4689999999999999975 22 12 49999999999999999873
No 488
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=0.83 Score=50.35 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~ 521 (1112)
++..++|++||||||||+.+
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 45568999999999999743
No 489
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=83.29 E-value=16 Score=37.95 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred eEEEeccchhhhccCC-hhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 619 TYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 619 ~~vViDEah~~~~~gf-~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
++|||-=.|.....++ ...+..-...++|+.+++++|+.-...+..++.+..
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 3444444443333343 234445567789999999999998777777765543
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.26 E-value=2.7 Score=44.41 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.++|+.||+|+|||++.+.
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 4799999999999987543
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=83.24 E-value=1.9 Score=45.03 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHH-cCCCEEEEcCCCChHHHH
Q 001261 490 PMPIQAQALPVIM-SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 490 pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~ 520 (1112)
.++-|...+...+ .|..++++|+||||||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776655 577889999999999974
No 492
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=83.13 E-value=3.7 Score=45.37 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 723 SQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
|+..++.|+..|...++.+...|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 578899999999999999998997764
No 493
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=83.08 E-value=5.2 Score=47.65 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=23.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|.+|+|||.. ++-+..++.. ..+..|+|++
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~------~~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL------REGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH------hCCCcEEEEE
Confidence 345577789999999964 4444434321 1244566766
No 494
>COG1485 Predicted ATPase [General function prediction only]
Probab=83.07 E-value=5.5 Score=45.07 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+.+.+.|+.|.|||. |+-++.+.... .. -.-++.-.-...+++.+..+- |.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~------~~---k~R~HFh~FM~~vH~~l~~l~------------g~------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG------ER---KRRLHFHRFMARVHQRLHTLQ------------GQ------ 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc------cc---cccccHHHHHHHHHHHHHHHc------------CC------
Confidence 678899999999995 55555443221 00 123566666666666666642 11
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
.+.+ ..+.+- .+.+..+|++||.|- .|.+-...+..++..+ .....+|.+|-|.|.++
T Consensus 117 ------~dpl----~~iA~~---------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 ------TDPL----PPIADE---------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------CCcc----HHHHHH---------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1100 001111 234578999999983 3333333445555443 45778888999988764
No 495
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=83.04 E-value=5.7 Score=47.49 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
|+....+---..+.=+..|.-+|+.|.+|+|||...+-.+++.... ....++++..-.-..|+...+.....
T Consensus 177 gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlEm~~~~i~~R~~~~~~ 248 (434)
T TIGR00665 177 GVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLEMSAEQLAMRMLSSES 248 (434)
T ss_pred cccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCcCCHHHHHHHHHHHhc
Q ss_pred hcCceEEEEeCCCChHHH------HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh----
Q 001261 566 VMGVRCVPVYGGSGVAQQ------ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE---- 635 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~------~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~---- 635 (1112)
.+.+.... .|.....+. +..+....-.|..+|+.=++.+...-.....-..+.+||||=.+.|...+..
T Consensus 249 ~v~~~~~~-~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~ 327 (434)
T TIGR00665 249 RVDSQKLR-TGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQ 327 (434)
T ss_pred CCCHHHhc-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHH
Q ss_pred hHHHHHHHhcC-----CCCcEEEEe
Q 001261 636 PQITRIVQNIR-----PDRQTVLFS 655 (1112)
Q Consensus 636 ~~i~~il~~~~-----~~~q~il~S 655 (1112)
..+..|...++ .+..+|++|
T Consensus 328 ~~i~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 328 QEVSEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEe
No 496
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=82.97 E-value=7.6 Score=46.56 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-HHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV-AQQIS 585 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~-~~~~~ 585 (1112)
+|+.|+.|+|||.++.+.+-..+...+.........|. .|..+.......+..+.|.... .+++.
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~--------------~C~~i~~~~~~d~~~i~g~~~~gid~ir 107 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA--------------SCKEISSGTSLDVLEIDGASHRGIEDIR 107 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH--------------HHHHHhcCCCCceEEeeccccCCHHHHH
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 586 ~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.+. ..+.+. .......+|||||+|.|.... ...+...+...++...+|+.+
T Consensus 108 ~i~-----------~~l~~~-------~~~~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 108 QIN-----------ETVLFT-------PSKSRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred HHH-----------HHHHhh-------hhcCCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=82.93 E-value=4.7 Score=48.29 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
+..|.-+++.|++|+|||+.++..+...... +..+|++..- +-..|+...+..+.-...
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~--------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN--------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEECc-CCHHHHHHHHHHcCCChH------------
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC----------ChhHHHHHHHhcCCCCc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g----------f~~~i~~il~~~~~~~q 650 (1112)
.+.+.....+..++.. ..-..+++||||-...|.... +...+..+....+..--
T Consensus 150 -----------~l~~~~e~~~~~I~~~-----i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~gi 213 (454)
T TIGR00416 150 -----------NLYVLSETNWEQICAN-----IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGI 213 (454)
T ss_pred -----------HeEEcCCCCHHHHHHH-----HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCC
Q ss_pred EEEEec
Q 001261 651 TVLFSA 656 (1112)
Q Consensus 651 ~il~SA 656 (1112)
++++++
T Consensus 214 Tvllt~ 219 (454)
T TIGR00416 214 AIFIVG 219 (454)
T ss_pred EEEEEe
No 498
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=3.5 Score=47.46 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc--------------
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-------------- 567 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-------------- 567 (1112)
+...++|+.||||||||+ +.--|..+.+ -|.+|.=|.|-.-|--+-+.+..+...+
T Consensus 224 LeKSNvLllGPtGsGKTl--laqTLAr~ld--------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTL--LAQTLARVLD--------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred eecccEEEECCCCCchhH--HHHHHHHHhC--------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcC
Q ss_pred ---------------CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhc
Q 001261 568 ---------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFD 631 (1112)
Q Consensus 568 ---------------~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~ 631 (1112)
++...--++|....+-+-.|..|+-|-| .........+=+.|.||=-+ .+.-
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnV------------peK~~~~~~rgd~vqiDTtnILFia 361 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNV------------PEKGSRRKPRGDTVQIDTTNILFIA 361 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcc------------cCCCCCCCCCCCeEEEeccceEEEe
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEec
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
+|-...+.+++.....+ +-|+|++
T Consensus 362 sGAF~~Ldk~I~rR~~d-~slGFg~ 385 (564)
T KOG0745|consen 362 SGAFVGLDKIISRRLDD-KSLGFGA 385 (564)
T ss_pred cccccchHHHHHHhhcc-hhcccCC
No 499
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=82.61 E-value=1.9 Score=51.37 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC-------CCcEEEEccch------hHHHHH-----------
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD-------GPVGLIMAPTR------ELVQQI----------- 556 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~-------~~~~LIl~Ptr------eLa~Q~----------- 556 (1112)
+.+|+++||+||+|+|||- +++.+-.-.+...|. +|+-|+-+|-| .|-.|+
T Consensus 458 V~~g~~LLItG~sG~GKtS-----LlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTS-----LLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred ecCCCeEEEECCCCCchhH-----HHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccc
Q ss_pred ----HHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc
Q 001261 557 ----HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (1112)
Q Consensus 557 ----~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~ 632 (1112)
-..+..++...++....-.-|.-..+....+.. |-+||-...+-... ..+..-.+.|+||+-.-++.
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d-----vLS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~ 603 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD-----VLSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTE 603 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh-----hcCHHHHHHHHHHH----HHhcCCceEEeechhhhccH
Q ss_pred CChhHHHHHHHhcC
Q 001261 633 GFEPQITRIVQNIR 646 (1112)
Q Consensus 633 gf~~~i~~il~~~~ 646 (1112)
+.+..+-+++....
T Consensus 604 dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 604 DVEGALYRKCREMG 617 (659)
T ss_pred HHHHHHHHHHHHcC
No 500
>PF14516 AAA_35: AAA-like domain
Probab=82.58 E-value=10 Score=43.62 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-------cchhHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-------PTRELVQQIHS 558 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-------PtreLa~Q~~~ 558 (1112)
|..-.|+..+++..|.. |.-+.|.||=.+||| +.+..++.++..+ |..+++|- ....+-.-+..
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKT-Sll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKT-SLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHH-HHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHH
Q ss_pred HHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhH
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQ 637 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~ 637 (1112)
-+..++..+++. ..+..-.+-.++.+..+..++... -+.....-=+|+|||+|.+++ ..+...
T Consensus 85 ~~~~i~~~L~l~--------------~~l~~~w~~~~~~~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~~~~~~d 148 (331)
T PF14516_consen 85 FCEEISRQLKLD--------------EKLDEYWDEEIGSKISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEYPQIADD 148 (331)
T ss_pred HHHHHHHHcCCC--------------hhHHHHHHHhcCChhhHHHHHHHH--HHhcCCCCEEEEEechhhhccCcchHHH
Q ss_pred HHHHHHhcCCCCc---------EEEEecc
Q 001261 638 ITRIVQNIRPDRQ---------TVLFSAT 657 (1112)
Q Consensus 638 i~~il~~~~~~~q---------~il~SAT 657 (1112)
+..++......+. +|++..|
T Consensus 149 F~~~LR~~~~~~~~~~~~~~L~li~~~~t 177 (331)
T PF14516_consen 149 FFGLLRSWYEQRKNNPIWQKLRLILAGST 177 (331)
T ss_pred HHHHHHHHHHhcccCcccceEEEEEecCc
Done!