Query 001261
Match_columns 1112
No_of_seqs 883 out of 5474
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.4E-64 8.3E-69 598.6 47.3 389 453-846 42-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.2E-58 2.8E-62 540.4 47.2 392 455-849 3-411 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.1E-54 3.8E-59 512.6 39.3 372 462-842 32-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 9.9E-54 3.4E-58 504.8 36.8 378 461-847 34-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.6E-52 5.4E-57 492.4 40.5 371 463-843 17-387 (400)
6 1xti_A Probable ATP-dependent 100.0 2.2E-51 7.4E-56 481.0 40.0 368 467-843 8-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 3.4E-51 1.2E-55 482.6 40.0 369 462-841 20-400 (412)
8 3pey_A ATP-dependent RNA helic 100.0 9.5E-51 3.2E-55 475.7 40.6 357 465-834 3-370 (395)
9 1fuu_A Yeast initiation factor 100.0 1.4E-52 4.9E-57 491.4 24.3 374 462-845 16-390 (394)
10 3sqw_A ATP-dependent RNA helic 100.0 4.9E-51 1.7E-55 502.4 39.1 359 474-835 28-412 (579)
11 1hv8_A Putative ATP-dependent 100.0 2.8E-50 9.4E-55 466.8 42.4 357 466-838 5-362 (367)
12 3fmp_B ATP-dependent RNA helic 100.0 1.8E-52 6.1E-57 504.0 20.8 365 465-840 90-466 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 497.3 38.2 359 474-835 79-463 (563)
14 2z0m_A 337AA long hypothetical 100.0 7.9E-48 2.7E-52 441.0 37.5 335 474-834 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 9.6E-48 3.3E-52 469.4 34.0 350 463-829 15-382 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.6E-48 5.4E-53 471.7 21.0 369 461-842 113-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 1.8E-46 6.1E-51 443.2 30.0 325 478-834 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 1.3E-45 4.4E-50 446.3 35.2 341 467-831 2-353 (523)
19 1tf5_A Preprotein translocase 100.0 5.4E-46 1.8E-50 452.2 31.4 373 424-823 22-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 5.8E-45 2E-49 471.5 23.4 330 467-821 162-597 (1108)
21 2fsf_A Preprotein translocase 100.0 2.9E-43 9.8E-48 426.8 30.4 368 435-825 24-587 (853)
22 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-42 6.4E-47 436.7 36.8 337 466-823 7-410 (715)
23 4a2p_A RIG-I, retinoic acid in 100.0 7.6E-43 2.6E-47 428.0 30.2 331 486-823 4-510 (556)
24 2zj8_A DNA helicase, putative 100.0 1.4E-42 4.8E-47 437.8 29.8 335 468-822 2-388 (720)
25 1nkt_A Preprotein translocase 100.0 3.7E-42 1.3E-46 416.8 31.4 325 484-823 107-619 (922)
26 3tbk_A RIG-I helicase domain; 100.0 2.5E-42 8.5E-47 423.1 30.4 331 488-826 3-512 (555)
27 4ddu_A Reverse gyrase; topoiso 100.0 2.2E-42 7.6E-47 447.3 30.4 373 484-890 74-562 (1104)
28 2p6r_A Afuhel308 helicase; pro 100.0 8.1E-43 2.8E-47 438.7 24.1 331 468-822 2-389 (702)
29 2ykg_A Probable ATP-dependent 100.0 5.6E-43 1.9E-47 441.1 21.2 339 480-825 4-520 (696)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 7.3E-43 2.5E-47 452.4 21.1 324 480-835 48-468 (1054)
31 4a2q_A RIG-I, retinoic acid in 100.0 2E-41 6.8E-46 431.4 33.1 332 485-823 244-751 (797)
32 2eyq_A TRCF, transcription-rep 100.0 4E-41 1.4E-45 438.4 36.6 370 472-895 586-969 (1151)
33 1gm5_A RECG; helicase, replica 100.0 8.2E-43 2.8E-47 434.2 19.0 362 476-897 356-740 (780)
34 2xgj_A ATP-dependent RNA helic 100.0 2.5E-40 8.5E-45 424.7 35.2 312 484-821 82-499 (1010)
35 1wp9_A ATP-dependent RNA helic 100.0 7.3E-40 2.5E-44 393.4 33.1 321 489-822 9-476 (494)
36 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-40 8.7E-45 425.4 28.7 332 485-823 244-751 (936)
37 4gl2_A Interferon-induced heli 100.0 1.5E-40 5.3E-45 419.0 19.5 329 488-822 6-519 (699)
38 4a4z_A Antiviral helicase SKI2 100.0 7.3E-39 2.5E-43 411.2 31.5 308 485-819 36-490 (997)
39 3fe2_A Probable ATP-dependent 100.0 3.2E-38 1.1E-42 344.3 28.8 238 441-681 3-240 (242)
40 2whx_A Serine protease/ntpase/ 100.0 1.1E-40 3.9E-45 408.1 9.1 323 472-842 155-502 (618)
41 2jlq_A Serine protease subunit 100.0 2.1E-39 7.1E-44 385.6 14.0 287 486-820 1-310 (451)
42 2xau_A PRE-mRNA-splicing facto 100.0 6.2E-39 2.1E-43 402.3 18.5 338 463-822 68-444 (773)
43 4f92_B U5 small nuclear ribonu 100.0 1.5E-37 5.2E-42 415.3 32.6 341 474-826 911-1313(1724)
44 2oca_A DAR protein, ATP-depend 100.0 1.4E-38 4.7E-43 386.1 17.2 311 488-819 112-453 (510)
45 4f92_B U5 small nuclear ribonu 100.0 3.9E-37 1.3E-41 411.3 29.1 338 486-829 76-481 (1724)
46 1yks_A Genome polyprotein [con 100.0 6.9E-39 2.3E-43 379.4 6.3 291 500-842 4-323 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 1.7E-37 5.7E-42 375.9 15.1 289 489-835 217-532 (666)
48 2wv9_A Flavivirin protease NS2 100.0 1.2E-37 4.2E-42 383.4 12.4 307 482-835 203-550 (673)
49 2fwr_A DNA repair protein RAD2 100.0 1.3E-36 4.4E-41 365.2 19.8 292 488-820 92-453 (472)
50 2z83_A Helicase/nucleoside tri 100.0 4.3E-37 1.5E-41 366.3 11.3 281 498-829 15-323 (459)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 1E-34 3.6E-39 318.7 23.1 236 453-691 7-252 (253)
52 2v6i_A RNA helicase; membrane, 100.0 9.7E-35 3.3E-39 343.2 22.8 269 503-818 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 309.8 23.2 216 459-678 11-228 (228)
54 3rc3_A ATP-dependent RNA helic 100.0 3.7E-34 1.3E-38 351.2 21.2 279 494-819 145-443 (677)
55 3ber_A Probable ATP-dependent 100.0 3E-33 1E-37 306.1 26.0 210 463-679 39-248 (249)
56 3fmo_B ATP-dependent RNA helic 100.0 1E-33 3.5E-38 318.0 22.7 214 456-679 78-298 (300)
57 3dkp_A Probable ATP-dependent 100.0 1.3E-33 4.4E-38 308.5 21.7 232 445-681 3-243 (245)
58 3h1t_A Type I site-specific re 100.0 6.6E-34 2.3E-38 350.9 21.7 308 488-810 177-545 (590)
59 3bor_A Human initiation factor 100.0 2.1E-33 7.2E-38 305.1 22.3 213 459-679 22-235 (237)
60 2pl3_A Probable ATP-dependent 100.0 7.9E-33 2.7E-37 300.4 26.6 229 443-680 6-234 (236)
61 2oxc_A Probable ATP-dependent 100.0 8E-33 2.7E-37 299.2 23.6 211 459-678 16-228 (230)
62 3dmq_A RNA polymerase-associat 100.0 4.4E-33 1.5E-37 358.5 24.3 357 488-859 152-654 (968)
63 1q0u_A Bstdead; DEAD protein, 100.0 5.5E-33 1.9E-37 298.1 20.7 207 465-679 2-212 (219)
64 1qde_A EIF4A, translation init 100.0 1.5E-32 5E-37 295.8 23.5 213 460-681 7-219 (224)
65 1vec_A ATP-dependent RNA helic 100.0 3.3E-32 1.1E-36 288.9 25.3 202 467-676 3-205 (206)
66 3jux_A Protein translocase sub 100.0 1.2E-31 4.1E-36 318.0 32.1 321 485-823 72-589 (822)
67 2gxq_A Heat resistant RNA depe 100.0 1.3E-31 4.4E-36 284.5 25.5 204 468-678 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 6.1E-32 2.1E-36 298.0 23.7 205 467-674 52-258 (262)
69 1z63_A Helicase of the SNF2/RA 100.0 2.1E-31 7.1E-36 322.2 29.6 310 488-820 36-452 (500)
70 1t6n_A Probable ATP-dependent 100.0 1.5E-31 5.1E-36 287.1 22.0 207 463-677 10-219 (220)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.2E-30 2.1E-34 326.2 29.6 336 476-835 251-718 (1038)
72 3mwy_W Chromo domain-containin 100.0 2E-29 6.9E-34 320.0 31.5 318 488-821 235-684 (800)
73 1z3i_X Similar to RAD54-like; 100.0 1.6E-28 5.4E-33 304.2 37.1 322 489-821 55-528 (644)
74 2ipc_A Preprotein translocase 100.0 6.4E-27 2.2E-31 282.4 35.3 321 485-823 76-700 (997)
75 1c4o_A DNA nucleotide excision 100.0 4.2E-27 1.4E-31 291.1 31.8 175 647-830 379-559 (664)
76 2p6n_A ATP-dependent RNA helic 99.9 2E-27 6.9E-32 248.4 17.1 181 666-848 8-189 (191)
77 2d7d_A Uvrabc system protein B 99.9 1E-26 3.5E-31 287.5 25.3 175 647-830 385-565 (661)
78 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.5E-26 8.6E-31 239.0 18.9 168 682-849 14-181 (185)
79 2hjv_A ATP-dependent RNA helic 99.9 9.8E-25 3.3E-29 222.3 18.6 152 684-836 6-157 (163)
80 1t5i_A C_terminal domain of A 99.9 9.7E-25 3.3E-29 224.3 15.5 158 686-844 4-162 (172)
81 1fuk_A Eukaryotic initiation f 99.9 8.1E-25 2.8E-29 223.4 13.1 157 687-844 3-160 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 3E-24 1E-28 221.5 17.2 156 684-840 4-166 (175)
83 3eaq_A Heat resistant RNA depe 99.9 2.2E-23 7.5E-28 221.8 20.4 149 688-837 6-154 (212)
84 3i32_A Heat resistant RNA depe 99.9 4.1E-23 1.4E-27 230.1 17.5 149 688-837 3-151 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 7E-24 2.4E-28 217.6 0.0 148 687-835 3-151 (170)
86 3b6e_A Interferon-induced heli 99.9 3.2E-22 1.1E-26 213.2 11.9 170 485-657 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 4.2E-21 1.4E-25 232.8 21.7 304 485-820 4-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 2E-21 6.7E-26 210.4 13.8 181 478-674 50-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.8 1.7E-19 5.8E-24 219.5 30.6 309 489-820 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.8 8.5E-21 2.9E-25 211.4 9.1 155 488-662 112-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 3.8E-17 1.3E-21 200.4 27.4 318 489-820 3-583 (620)
92 2fz4_A DNA repair protein RAD2 99.7 2.5E-17 8.7E-22 178.0 15.0 139 488-661 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 3.7E-17 1.3E-21 179.8 13.3 127 695-821 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.7 1.4E-08 4.6E-13 124.5 9.8 146 491-657 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.1 0.0001 3.5E-09 91.1 21.4 66 489-562 189-255 (646)
96 2xzl_A ATP-dependent helicase 98.1 0.00019 6.6E-09 90.1 23.1 70 487-563 358-427 (802)
97 3upu_A ATP-dependent DNA helic 98.0 0.00014 4.9E-09 85.9 19.6 137 483-657 19-164 (459)
98 3lfu_A DNA helicase II; SF1 he 98.0 0.00026 8.9E-09 87.6 21.9 72 488-565 8-79 (647)
99 2wjy_A Regulator of nonsense t 97.9 0.00027 9.1E-09 88.7 21.2 69 487-562 354-422 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.9 3E-05 1E-09 93.9 10.3 127 488-657 188-315 (574)
101 2gk6_A Regulator of nonsense t 97.8 0.00014 4.7E-09 89.4 15.0 69 487-562 178-246 (624)
102 1k1g_A SF1-BO isoform; splicin 97.7 4.7E-05 1.6E-09 72.7 6.9 83 1011-1093 5-100 (131)
103 2yqr_A KIAA0907 protein; struc 97.6 0.00011 3.7E-09 68.7 7.8 82 1013-1095 12-102 (119)
104 3hgt_A HDA1 complex subunit 3; 97.6 0.00026 8.9E-09 77.9 11.3 122 696-822 106-238 (328)
105 2o0j_A Terminase, DNA packagin 97.1 0.003 1E-07 72.0 13.7 73 489-567 163-235 (385)
106 1uaa_A REP helicase, protein ( 97.0 0.0041 1.4E-07 77.1 14.6 71 489-565 2-72 (673)
107 2bl5_A MGC83862 protein, quaki 96.5 0.0015 5.2E-08 62.5 4.1 76 1016-1091 7-100 (140)
108 2orw_A Thymidine kinase; TMTK, 96.4 0.01 3.4E-07 60.6 9.7 39 503-549 2-40 (184)
109 3ec2_A DNA replication protein 96.4 0.011 3.7E-07 59.8 9.6 32 491-522 16-56 (180)
110 1xx6_A Thymidine kinase; NESG, 96.3 0.0076 2.6E-07 61.8 8.3 39 503-549 7-45 (191)
111 3cpe_A Terminase, DNA packagin 96.3 0.029 1E-06 68.1 14.9 74 489-568 163-236 (592)
112 2b8t_A Thymidine kinase; deoxy 96.0 0.0084 2.9E-07 63.0 6.6 91 503-629 11-101 (223)
113 3kl4_A SRP54, signal recogniti 95.9 0.035 1.2E-06 64.1 12.0 130 506-669 99-234 (433)
114 2j9r_A Thymidine kinase; TK1, 95.9 0.0077 2.6E-07 62.5 5.7 39 504-550 28-66 (214)
115 2orv_A Thymidine kinase; TP4A 95.5 0.023 8E-07 59.4 7.7 40 503-550 18-57 (234)
116 3vkw_A Replicase large subunit 95.4 0.018 6.2E-07 66.3 6.9 107 506-657 163-269 (446)
117 2kjq_A DNAA-related protein; s 95.2 0.014 4.7E-07 57.3 4.5 18 503-520 35-52 (149)
118 2p65_A Hypothetical protein PF 95.1 0.1 3.6E-06 52.1 11.0 19 504-522 43-61 (187)
119 3dm5_A SRP54, signal recogniti 95.1 0.16 5.6E-06 58.6 13.7 131 506-669 102-235 (443)
120 3e2i_A Thymidine kinase; Zn-bi 94.9 0.027 9.1E-07 58.3 5.8 40 503-550 27-66 (219)
121 2w58_A DNAI, primosome compone 94.9 0.19 6.4E-06 51.5 12.4 25 505-530 55-79 (202)
122 1jbk_A CLPB protein; beta barr 94.9 0.15 5.2E-06 51.0 11.5 25 504-529 43-67 (195)
123 1l8q_A Chromosomal replication 94.8 0.098 3.4E-06 58.2 10.8 25 504-529 37-61 (324)
124 1w4r_A Thymidine kinase; type 94.8 0.067 2.3E-06 54.5 8.4 39 503-549 19-57 (195)
125 3te6_A Regulatory protein SIR3 94.7 0.19 6.6E-06 55.5 12.5 28 503-531 44-71 (318)
126 2zpa_A Uncharacterized protein 94.6 0.056 1.9E-06 65.4 8.5 113 489-659 175-289 (671)
127 3u4q_A ATP-dependent helicase/ 94.5 0.067 2.3E-06 70.7 9.6 129 488-627 9-137 (1232)
128 1d2n_A N-ethylmaleimide-sensit 94.4 0.27 9.3E-06 53.0 12.9 18 505-522 65-82 (272)
129 1gm5_A RECG; helicase, replica 94.4 0.12 4.2E-06 64.3 11.2 96 698-793 400-501 (780)
130 2qgz_A Helicase loader, putati 94.2 0.17 5.8E-06 55.9 10.6 19 504-522 152-170 (308)
131 1g5t_A COB(I)alamin adenosyltr 94.1 0.15 5.1E-06 52.0 9.0 135 505-666 29-171 (196)
132 2opv_A KHSRP protein; KH domai 94.1 0.054 1.8E-06 47.4 5.0 71 1013-1092 14-85 (85)
133 1pjr_A PCRA; DNA repair, DNA r 93.9 0.087 3E-06 65.6 8.5 72 488-565 10-81 (724)
134 2z4s_A Chromosomal replication 93.9 0.19 6.7E-06 58.5 10.8 18 504-521 130-147 (440)
135 3h4m_A Proteasome-activating n 93.7 0.05 1.7E-06 59.3 5.1 55 464-521 11-68 (285)
136 1ec6_A RNA-binding protein NOV 93.7 0.23 7.8E-06 43.6 8.3 60 1032-1097 21-80 (87)
137 2p2r_A Poly(RC)-binding protei 93.5 0.091 3.1E-06 44.9 5.3 71 1012-1093 4-75 (76)
138 1dtj_A RNA-binding neurooncolo 93.4 0.11 3.9E-06 44.2 5.8 62 1026-1093 14-76 (76)
139 1a5t_A Delta prime, HOLB; zinc 93.3 0.17 5.8E-06 56.6 8.7 39 491-530 4-49 (334)
140 1zzk_A Heterogeneous nuclear r 93.3 0.18 6.1E-06 43.8 6.9 71 1012-1093 6-77 (82)
141 3oiy_A Reverse gyrase helicase 93.3 0.25 8.5E-06 56.9 10.4 80 712-791 62-148 (414)
142 3n70_A Transport activator; si 93.2 0.17 5.7E-06 49.1 7.5 22 501-522 21-42 (145)
143 2cte_A Vigilin; K homology typ 93.2 0.29 9.8E-06 43.7 8.3 73 1011-1096 15-88 (94)
144 2qby_B CDC6 homolog 3, cell di 93.1 0.3 1E-05 55.4 10.6 24 505-529 46-69 (384)
145 3cf0_A Transitional endoplasmi 92.9 0.19 6.4E-06 55.3 8.1 54 465-521 10-66 (301)
146 2chg_A Replication factor C sm 92.8 0.78 2.7E-05 46.9 12.4 40 616-656 101-140 (226)
147 2v1u_A Cell division control p 92.8 0.22 7.7E-06 56.4 8.9 19 503-521 43-61 (387)
148 4b4t_M 26S protease regulatory 92.7 0.31 1.1E-05 56.2 9.9 55 463-520 174-231 (434)
149 3eie_A Vacuolar protein sortin 92.4 0.58 2E-05 51.9 11.4 51 465-521 13-68 (322)
150 1fnn_A CDC6P, cell division co 92.3 0.27 9.2E-06 55.8 8.8 23 506-529 46-68 (389)
151 3u61_B DNA polymerase accessor 92.3 0.18 6.3E-06 55.9 7.1 41 616-656 104-144 (324)
152 3vfd_A Spastin; ATPase, microt 92.2 0.89 3E-05 51.9 13.0 18 504-521 148-165 (389)
153 3pfi_A Holliday junction ATP-d 92.1 0.31 1.1E-05 54.3 8.8 17 505-521 56-72 (338)
154 1njg_A DNA polymerase III subu 92.0 1.7 5.8E-05 44.9 14.1 23 506-529 47-69 (250)
155 3bos_A Putative DNA replicatio 92.0 0.16 5.6E-06 53.2 6.0 19 503-521 51-69 (242)
156 2hh2_A KH-type splicing regula 92.0 0.17 5.9E-06 46.3 5.2 73 1014-1094 8-81 (107)
157 1j5k_A Heterogeneous nuclear r 92.0 0.31 1E-05 43.0 6.7 71 1012-1093 13-84 (89)
158 3syl_A Protein CBBX; photosynt 91.9 0.097 3.3E-06 57.7 4.3 18 505-522 68-85 (309)
159 2qby_A CDC6 homolog 1, cell di 91.8 0.89 3E-05 51.2 12.4 25 504-529 45-69 (386)
160 1x4n_A FAR upstream element bi 91.8 0.31 1.1E-05 43.2 6.6 71 1012-1093 14-85 (92)
161 1xwi_A SKD1 protein; VPS4B, AA 91.5 0.64 2.2E-05 51.6 10.4 51 465-521 7-62 (322)
162 4b4t_J 26S protease regulatory 91.3 0.19 6.4E-06 57.3 5.7 54 465-521 143-199 (405)
163 1ls1_A Signal recognition part 91.2 1 3.5E-05 49.2 11.6 52 616-667 179-231 (295)
164 1sxj_E Activator 1 40 kDa subu 91.2 0.32 1.1E-05 54.6 7.6 42 616-658 133-174 (354)
165 2hh3_A KH-type splicing regula 91.1 0.42 1.4E-05 43.6 6.8 70 1014-1094 12-82 (106)
166 3b9p_A CG5977-PA, isoform A; A 90.5 1.4 4.8E-05 47.9 11.8 47 465-521 16-71 (297)
167 1x4m_A FAR upstream element bi 90.4 0.24 8.1E-06 44.2 4.4 75 1009-1092 11-86 (94)
168 2px0_A Flagellar biosynthesis 90.2 0.46 1.6E-05 52.0 7.6 23 503-525 104-126 (296)
169 2axy_A Poly(RC)-binding protei 90.1 0.49 1.7E-05 39.9 6.0 67 1013-1092 5-72 (73)
170 1we8_A Tudor and KH domain con 90.1 0.88 3E-05 41.3 8.1 73 1013-1094 15-88 (104)
171 1ofh_A ATP-dependent HSL prote 90.0 1.2 4.2E-05 48.5 10.9 19 503-521 49-67 (310)
172 2w0m_A SSO2452; RECA, SSPF, un 90.0 1.1 3.7E-05 46.5 10.0 21 503-523 22-42 (235)
173 2ctl_A Vigilin; K homology typ 89.9 1.1 3.9E-05 39.9 8.5 74 1012-1095 16-90 (97)
174 2ctj_A Vigilin; K homology typ 89.9 0.53 1.8E-05 42.0 6.2 70 1011-1093 15-86 (95)
175 4ddu_A Reverse gyrase; topoiso 89.9 0.55 1.9E-05 61.0 9.0 78 713-791 120-205 (1104)
176 3pvs_A Replication-associated 89.8 0.6 2.1E-05 54.3 8.5 17 505-521 51-67 (447)
177 1wvn_A Poly(RC)-binding protei 89.5 0.37 1.3E-05 41.7 4.8 71 1012-1093 5-76 (82)
178 1vig_A Vigilin; RNA-binding pr 89.3 0.73 2.5E-05 38.6 6.3 66 1012-1090 4-70 (71)
179 2eyq_A TRCF, transcription-rep 89.3 1 3.5E-05 58.9 10.9 91 698-788 635-731 (1151)
180 1jr3_A DNA polymerase III subu 89.2 1.3 4.3E-05 49.9 10.5 23 506-529 40-62 (373)
181 3uk6_A RUVB-like 2; hexameric 89.2 1.1 3.6E-05 50.5 9.8 25 504-529 70-94 (368)
182 2qp9_X Vacuolar protein sortin 89.1 0.58 2E-05 52.7 7.4 19 504-522 84-102 (355)
183 3e70_C DPA, signal recognition 89.0 2.3 7.8E-05 47.2 12.1 53 618-670 212-265 (328)
184 2dr3_A UPF0273 protein PH0284; 88.9 1.5 5.2E-05 45.9 10.2 50 503-561 22-71 (247)
185 4b4t_L 26S protease subunit RP 88.7 0.29 9.8E-06 56.5 4.6 55 464-521 175-232 (437)
186 4b4t_K 26S protease regulatory 88.6 1.1 3.9E-05 51.5 9.4 55 464-521 166-223 (428)
187 1t6n_A Probable ATP-dependent 88.3 1.6 5.6E-05 44.9 9.8 72 715-789 83-165 (220)
188 2qz4_A Paraplegin; AAA+, SPG7, 88.1 1.8 6.2E-05 45.9 10.2 18 504-521 39-56 (262)
189 2r6a_A DNAB helicase, replicat 88.1 1 3.6E-05 52.5 8.9 38 503-547 202-239 (454)
190 1vma_A Cell division protein F 88.0 3.1 0.00011 45.5 12.2 19 505-523 105-123 (306)
191 2ehv_A Hypothetical protein PH 88.0 0.44 1.5E-05 50.3 5.2 45 616-660 134-183 (251)
192 3lda_A DNA repair protein RAD5 87.8 3.1 0.00011 47.4 12.4 19 504-522 178-196 (400)
193 2v1x_A ATP-dependent DNA helic 87.5 1 3.5E-05 54.4 8.6 76 713-788 83-171 (591)
194 1sxj_D Activator 1 41 kDa subu 87.5 0.97 3.3E-05 50.4 8.0 39 616-655 132-170 (353)
195 2q6t_A DNAB replication FORK h 87.2 0.77 2.6E-05 53.4 7.0 37 504-547 200-236 (444)
196 2cvh_A DNA repair and recombin 87.1 1.5 5.2E-05 45.0 8.7 23 503-525 19-41 (220)
197 3d8b_A Fidgetin-like protein 1 87.1 0.58 2E-05 52.8 5.8 19 504-522 117-135 (357)
198 2ctm_A Vigilin; K homology typ 87.0 1.3 4.4E-05 39.4 6.8 73 1012-1096 16-89 (95)
199 1oyw_A RECQ helicase, ATP-depe 86.6 2.8 9.6E-05 49.8 11.7 76 713-788 64-145 (523)
200 2yhs_A FTSY, cell division pro 86.6 1.1 3.9E-05 52.1 7.9 19 504-522 293-311 (503)
201 1iqp_A RFCS; clamp loader, ext 86.6 1.7 5.7E-05 47.7 9.2 39 616-655 109-147 (327)
202 2ctk_A Vigilin; K homology typ 86.5 1.1 3.9E-05 40.5 6.3 69 1013-1094 17-86 (104)
203 4b4t_H 26S protease regulatory 86.4 0.72 2.5E-05 53.3 6.0 55 464-521 203-260 (467)
204 1nlf_A Regulatory protein REPA 86.4 2.6 8.9E-05 45.4 10.4 26 501-526 27-52 (279)
205 2jzx_A Poly(RC)-binding protei 86.3 1.1 3.8E-05 44.0 6.7 71 1012-1092 88-159 (160)
206 4b4t_I 26S protease regulatory 86.3 0.8 2.7E-05 52.4 6.3 55 464-521 176-233 (437)
207 1hqc_A RUVB; extended AAA-ATPa 86.3 2.7 9.4E-05 46.1 10.7 18 504-521 38-55 (324)
208 2ffh_A Protein (FFH); SRP54, s 86.1 4.4 0.00015 46.5 12.4 21 504-524 98-118 (425)
209 2zan_A Vacuolar protein sortin 86.1 1.2 4E-05 51.9 7.8 18 504-521 167-184 (444)
210 1qvr_A CLPB protein; coiled co 85.8 1.3 4.4E-05 56.2 8.5 19 504-522 191-209 (854)
211 3hu3_A Transitional endoplasmi 85.6 1.8 6.1E-05 50.9 9.0 42 618-659 298-349 (489)
212 2p6n_A ATP-dependent RNA helic 85.4 4.8 0.00017 40.6 11.2 71 540-623 54-128 (191)
213 1sxj_B Activator 1 37 kDa subu 85.3 1.5 5.1E-05 48.1 7.9 38 617-655 107-144 (323)
214 3ber_A Probable ATP-dependent 85.2 3.6 0.00012 43.5 10.5 71 714-788 111-192 (249)
215 2gno_A DNA polymerase III, gam 85.2 3.1 0.00011 45.6 10.2 17 506-522 20-36 (305)
216 1sxj_C Activator 1 40 kDa subu 85.2 2.3 8E-05 47.3 9.5 38 616-654 109-146 (340)
217 3t15_A Ribulose bisphosphate c 84.9 0.62 2.1E-05 50.9 4.4 16 505-520 37-52 (293)
218 2zts_A Putative uncharacterize 84.6 1.2 4.1E-05 46.8 6.5 51 503-561 29-79 (251)
219 1n0w_A DNA repair protein RAD5 84.4 1.4 4.9E-05 46.0 7.0 24 503-526 23-46 (243)
220 2j37_W Signal recognition part 84.3 5.3 0.00018 46.9 12.2 57 506-573 103-161 (504)
221 2v3c_C SRP54, signal recogniti 84.3 0.66 2.3E-05 53.7 4.4 22 505-526 100-121 (432)
222 1cr0_A DNA primase/helicase; R 84.2 1.7 5.9E-05 47.3 7.6 21 503-523 34-54 (296)
223 3cmu_A Protein RECA, recombina 84.1 1.4 4.9E-05 59.7 8.0 45 498-550 1415-1465(2050)
224 4a1f_A DNAB helicase, replicat 84.1 0.77 2.6E-05 51.2 4.7 37 503-547 45-81 (338)
225 1sxj_A Activator 1 95 kDa subu 84.0 2.5 8.6E-05 50.1 9.5 41 616-658 147-189 (516)
226 3k1j_A LON protease, ATP-depen 83.5 6.2 0.00021 47.7 12.9 24 498-521 54-77 (604)
227 3fe2_A Probable ATP-dependent 83.5 7 0.00024 40.8 11.9 71 714-788 102-182 (242)
228 2pl3_A Probable ATP-dependent 83.4 5 0.00017 41.7 10.6 70 714-788 97-177 (236)
229 2xxa_A Signal recognition part 83.2 4.5 0.00015 46.6 10.9 57 506-572 102-160 (433)
230 3krm_A Insulin-like growth fac 83.2 2 6.8E-05 42.3 6.9 75 1011-1094 83-158 (163)
231 1j8m_F SRP54, signal recogniti 83.1 4.5 0.00015 44.1 10.3 20 504-523 98-117 (297)
232 3hjh_A Transcription-repair-co 82.9 2.7 9.3E-05 49.2 8.9 52 503-565 13-64 (483)
233 1w5s_A Origin recognition comp 82.6 1.6 5.6E-05 49.7 6.9 17 505-521 51-69 (412)
234 2hjv_A ATP-dependent RNA helic 82.3 3 0.0001 40.8 7.8 72 540-624 35-110 (163)
235 2oxc_A Probable ATP-dependent 82.2 2.9 9.9E-05 43.5 8.1 70 714-788 92-172 (230)
236 2dgr_A Ring finger and KH doma 82.0 1.8 6.2E-05 37.4 5.2 67 1010-1090 7-74 (83)
237 2z43_A DNA repair and recombin 81.2 3.7 0.00013 45.4 9.0 44 503-548 106-149 (324)
238 1fuk_A Eukaryotic initiation f 81.2 5.6 0.00019 38.8 9.4 72 540-624 30-105 (165)
239 2ce7_A Cell division protein F 81.1 1.5 5E-05 51.4 5.7 17 505-521 50-66 (476)
240 3bor_A Human initiation factor 81.0 2.9 9.9E-05 43.7 7.6 72 714-788 98-179 (237)
241 2fna_A Conserved hypothetical 80.9 33 0.0011 37.4 17.0 38 618-657 138-178 (357)
242 1xti_A Probable ATP-dependent 80.7 4.5 0.00015 45.5 9.7 72 714-788 76-158 (391)
243 3bh0_A DNAB-like replicative h 80.6 2.6 8.8E-05 46.5 7.3 51 503-562 67-117 (315)
244 1xp8_A RECA protein, recombina 80.3 3.2 0.00011 46.7 8.0 37 504-548 74-110 (366)
245 2zr9_A Protein RECA, recombina 80.2 3 0.0001 46.7 7.7 38 503-548 60-97 (349)
246 2rb4_A ATP-dependent RNA helic 80.2 4 0.00014 40.4 8.0 71 540-623 34-108 (175)
247 1vec_A ATP-dependent RNA helic 80.2 5.1 0.00017 40.5 9.0 71 714-788 71-152 (206)
248 2gxq_A Heat resistant RNA depe 79.1 11 0.00036 38.0 11.1 71 714-788 72-150 (207)
249 1r6b_X CLPA protein; AAA+, N-t 79.1 3.7 0.00013 51.2 8.9 20 503-522 206-225 (758)
250 1wrb_A DJVLGB; RNA helicase, D 78.9 22 0.00076 37.1 13.9 70 715-788 101-180 (253)
251 3hr8_A Protein RECA; alpha and 78.8 1.7 5.8E-05 48.7 5.1 39 504-550 61-99 (356)
252 3cf2_A TER ATPase, transitiona 78.6 2.5 8.7E-05 52.5 7.0 56 463-521 470-528 (806)
253 3i5x_A ATP-dependent RNA helic 78.6 9.7 0.00033 45.3 12.2 100 511-625 315-418 (563)
254 3eaq_A Heat resistant RNA depe 78.5 11 0.00037 38.6 10.9 71 540-623 31-105 (212)
255 3co5_A Putative two-component 78.4 1.4 4.7E-05 42.3 3.7 22 499-520 22-43 (143)
256 3iuy_A Probable ATP-dependent 78.3 4.7 0.00016 41.6 8.2 71 714-788 94-173 (228)
257 1t5i_A C_terminal domain of A 77.6 32 0.0011 33.6 13.7 73 540-625 31-107 (172)
258 2jgn_A DBX, DDX3, ATP-dependen 77.5 5.6 0.00019 39.9 8.2 72 539-623 45-120 (185)
259 1qde_A EIF4A, translation init 77.1 3.2 0.00011 42.7 6.4 70 714-788 82-161 (224)
260 3sqw_A ATP-dependent RNA helic 76.3 12 0.00042 44.7 12.2 78 539-626 287-368 (579)
261 4a74_A DNA repair and recombin 76.2 4.4 0.00015 41.8 7.2 20 503-522 24-43 (231)
262 3ly5_A ATP-dependent RNA helic 75.6 12 0.00041 39.7 10.6 71 714-788 126-207 (262)
263 3cmu_A Protein RECA, recombina 75.5 2.8 9.7E-05 56.9 6.6 46 503-557 1080-1125(2050)
264 3m6a_A ATP-dependent protease 75.4 3.1 0.0001 49.7 6.4 19 503-521 107-125 (543)
265 1zu4_A FTSY; GTPase, signal re 75.4 7.2 0.00025 43.0 8.9 20 504-523 105-124 (320)
266 2jvz_A KH type-splicing, FAR u 74.6 3.7 0.00013 40.3 5.7 71 1014-1093 3-74 (164)
267 2eyu_A Twitching motility prot 74.5 1.5 5E-05 47.0 2.9 20 501-520 22-41 (261)
268 1wp9_A ATP-dependent RNA helic 74.0 11 0.00038 43.2 10.7 86 698-788 34-131 (494)
269 1pzn_A RAD51, DNA repair and r 73.9 4.4 0.00015 45.3 6.8 21 503-523 130-150 (349)
270 3bgw_A DNAB-like replicative h 73.9 3.3 0.00011 48.0 5.9 36 504-547 197-232 (444)
271 1v5w_A DMC1, meiotic recombina 73.7 4.6 0.00016 45.0 6.9 45 503-549 121-165 (343)
272 3pxi_A Negative regulator of g 73.5 3 0.0001 52.0 5.9 17 506-522 523-539 (758)
273 3u4q_B ATP-dependent helicase/ 73.4 4.1 0.00014 53.5 7.3 88 507-627 4-91 (1166)
274 4ag6_A VIRB4 ATPase, type IV s 73.0 3.7 0.00012 46.7 6.0 42 503-552 34-75 (392)
275 1j4w_A FUSE binding protein; s 72.7 4.7 0.00016 40.0 6.0 70 1013-1090 104-174 (174)
276 2i4i_A ATP-dependent RNA helic 72.3 11 0.00038 42.6 10.0 72 539-623 275-350 (417)
277 1e9r_A Conjugal transfer prote 72.3 3.1 0.00011 48.1 5.2 44 503-554 52-95 (437)
278 2db3_A ATP-dependent RNA helic 72.1 9.7 0.00033 43.8 9.4 70 715-788 130-209 (434)
279 2i1q_A DNA repair and recombin 71.1 6.1 0.00021 43.4 7.1 23 504-526 98-120 (322)
280 2jvz_A KH type-splicing, FAR u 70.3 7.4 0.00025 38.0 6.8 60 1025-1093 101-161 (164)
281 3i32_A Heat resistant RNA depe 70.2 14 0.00047 40.2 9.5 71 540-623 28-102 (300)
282 1tua_A Hypothetical protein AP 70.1 8.8 0.0003 38.7 7.2 92 984-1091 59-159 (191)
283 1gku_B Reverse gyrase, TOP-RG; 70.0 10 0.00035 49.0 9.8 74 713-788 98-181 (1054)
284 1ypw_A Transitional endoplasmi 69.8 10 0.00034 47.5 9.4 18 503-520 237-254 (806)
285 1fuu_A Yeast initiation factor 69.7 10 0.00035 42.4 8.8 70 714-788 89-168 (394)
286 1j4w_A FUSE binding protein; s 69.6 7.6 0.00026 38.5 6.7 54 1031-1093 20-73 (174)
287 2ctf_A Vigilin; K homology typ 69.5 13 0.00046 33.3 7.6 69 1013-1097 27-97 (102)
288 3jvv_A Twitching mobility prot 69.4 3.8 0.00013 45.9 4.9 18 503-520 122-139 (356)
289 2e3u_A PH-DIM2P, hypothetical 69.3 18 0.00063 37.2 9.6 67 1010-1092 115-191 (219)
290 4a2p_A RIG-I, retinoic acid in 69.1 12 0.00041 44.2 9.6 71 714-788 55-136 (556)
291 3cf2_A TER ATPase, transitiona 69.0 6.1 0.00021 49.1 7.0 16 505-520 239-254 (806)
292 2oap_1 GSPE-2, type II secreti 67.7 4.4 0.00015 47.8 5.2 37 482-520 239-276 (511)
293 3tbk_A RIG-I helicase domain; 67.4 8.1 0.00028 45.6 7.6 71 714-788 52-133 (555)
294 1q0u_A Bstdead; DEAD protein, 66.7 4.8 0.00016 41.3 4.7 71 714-788 72-156 (219)
295 3dkp_A Probable ATP-dependent 66.6 4.7 0.00016 42.2 4.8 71 715-788 99-181 (245)
296 4a2q_A RIG-I, retinoic acid in 66.4 13 0.00046 46.4 9.6 71 714-788 296-377 (797)
297 3b85_A Phosphate starvation-in 66.4 4.7 0.00016 41.4 4.5 32 490-521 8-39 (208)
298 2d7d_A Uvrabc system protein B 65.8 23 0.0008 43.1 11.3 77 540-629 445-525 (661)
299 3g5j_A Putative ATP/GTP bindin 65.8 6.7 0.00023 36.6 5.2 48 703-750 77-126 (134)
300 1c4o_A DNA nucleotide excision 65.5 57 0.002 39.6 14.7 76 540-628 439-518 (664)
301 3io5_A Recombination and repai 64.9 6.6 0.00023 43.0 5.4 41 506-552 30-70 (333)
302 1s2m_A Putative ATP-dependent 64.2 30 0.001 38.7 11.3 72 714-789 89-170 (400)
303 3cmw_A Protein RECA, recombina 64.1 5.7 0.00019 53.3 5.6 44 504-555 1431-1474(1706)
304 2anr_A Neuro-oncological ventr 63.9 9 0.00031 38.1 6.0 71 1012-1092 5-78 (178)
305 2anr_A Neuro-oncological ventr 63.7 7.7 0.00026 38.6 5.4 71 1013-1092 104-175 (178)
306 3gk5_A Uncharacterized rhodane 63.6 5.8 0.0002 35.8 4.1 46 705-750 46-91 (108)
307 3eiq_A Eukaryotic initiation f 63.2 19 0.00063 40.6 9.3 73 713-788 107-189 (414)
308 3h75_A Periplasmic sugar-bindi 63.0 1.7E+02 0.0059 31.6 20.9 27 714-740 204-230 (350)
309 2jzx_A Poly(RC)-binding protei 62.9 12 0.0004 36.5 6.5 68 1014-1094 6-74 (160)
310 1kgd_A CASK, peripheral plasma 62.8 3.7 0.00013 40.9 2.9 19 503-521 4-22 (180)
311 1tf7_A KAIC; homohexamer, hexa 62.6 29 0.001 40.9 11.1 39 503-549 280-318 (525)
312 1hv8_A Putative ATP-dependent 62.5 42 0.0014 36.7 12.0 70 714-788 74-153 (367)
313 3fht_A ATP-dependent RNA helic 62.0 12 0.0004 42.2 7.3 71 540-623 266-340 (412)
314 2fsf_A Preprotein translocase 61.1 16 0.00055 45.1 8.5 80 703-788 104-200 (853)
315 2gza_A Type IV secretion syste 60.7 5 0.00017 45.1 3.7 20 501-520 172-191 (361)
316 2j0s_A ATP-dependent RNA helic 60.7 42 0.0014 37.6 11.8 72 713-788 104-185 (410)
317 3fmo_B ATP-dependent RNA helic 59.9 10 0.00034 41.3 5.9 66 716-788 164-241 (300)
318 1lvg_A Guanylate kinase, GMP k 59.6 5.1 0.00017 40.6 3.3 19 503-521 3-21 (198)
319 2z0m_A 337AA long hypothetical 59.1 34 0.0012 37.0 10.3 70 714-788 56-135 (337)
320 3hws_A ATP-dependent CLP prote 59.0 13 0.00046 41.4 7.0 19 503-521 50-68 (363)
321 2bjv_A PSP operon transcriptio 58.7 5.8 0.0002 42.1 3.7 19 502-520 27-45 (265)
322 1p9r_A General secretion pathw 58.6 7.1 0.00024 44.7 4.5 25 504-529 167-191 (418)
323 3b6e_A Interferon-induced heli 58.5 10 0.00036 38.2 5.5 55 714-772 82-140 (216)
324 1qhx_A CPT, protein (chloramph 58.3 4 0.00014 40.2 2.2 18 504-521 3-20 (178)
325 3vaa_A Shikimate kinase, SK; s 58.2 5.3 0.00018 40.4 3.1 20 503-522 24-43 (199)
326 3krm_A Insulin-like growth fac 58.0 16 0.00056 35.5 6.6 60 1026-1093 14-74 (163)
327 3a8t_A Adenylate isopentenyltr 57.6 5.1 0.00018 44.3 3.0 18 505-522 41-58 (339)
328 3nbx_X ATPase RAVA; AAA+ ATPas 57.5 11 0.00037 44.2 6.0 28 493-520 30-57 (500)
329 2og2_A Putative signal recogni 57.4 20 0.00067 40.1 7.8 19 504-522 157-175 (359)
330 1tf5_A Preprotein translocase 57.2 24 0.00081 43.7 9.0 79 704-788 114-209 (844)
331 3iij_A Coilin-interacting nucl 56.9 4.1 0.00014 40.4 2.0 21 502-522 9-29 (180)
332 3tau_A Guanylate kinase, GMP k 56.7 5.8 0.0002 40.5 3.1 19 503-521 7-25 (208)
333 2xau_A PRE-mRNA-splicing facto 56.6 21 0.00074 44.3 8.8 75 540-623 303-393 (773)
334 3l49_A ABC sugar (ribose) tran 56.5 1.8E+02 0.0061 30.3 15.3 183 541-739 6-215 (291)
335 3exa_A TRNA delta(2)-isopenten 56.4 4.9 0.00017 44.0 2.6 18 505-522 4-21 (322)
336 2j41_A Guanylate kinase; GMP, 56.4 5.5 0.00019 40.3 2.9 21 501-521 3-23 (207)
337 2r44_A Uncharacterized protein 56.4 7.1 0.00024 43.0 4.0 25 497-521 39-63 (331)
338 1lv7_A FTSH; alpha/beta domain 56.2 15 0.00051 38.6 6.4 53 466-521 8-62 (257)
339 2yjt_D ATP-dependent RNA helic 60.7 2.4 8.3E-05 41.8 0.0 71 540-623 30-104 (170)
340 3tr0_A Guanylate kinase, GMP k 55.7 5.6 0.00019 40.1 2.8 19 503-521 6-24 (205)
341 2qmh_A HPR kinase/phosphorylas 55.7 5 0.00017 40.8 2.3 20 503-522 33-52 (205)
342 1kht_A Adenylate kinase; phosp 55.7 4.9 0.00017 40.0 2.3 20 503-522 2-21 (192)
343 3pey_A ATP-dependent RNA helic 55.5 52 0.0018 36.4 11.2 75 540-627 243-321 (395)
344 1u0j_A DNA replication protein 55.4 19 0.00064 38.4 6.8 43 477-522 74-122 (267)
345 3ney_A 55 kDa erythrocyte memb 55.4 6 0.0002 40.2 2.9 20 502-521 17-36 (197)
346 2ykg_A Probable ATP-dependent 55.2 16 0.00054 44.8 7.3 70 715-788 62-142 (696)
347 2pt7_A CAG-ALFA; ATPase, prote 54.7 6.2 0.00021 43.7 3.1 19 501-519 168-186 (330)
348 3trf_A Shikimate kinase, SK; a 54.6 6.6 0.00022 38.9 3.1 19 504-522 5-23 (185)
349 3lw7_A Adenylate kinase relate 54.5 5.2 0.00018 38.9 2.3 17 506-522 3-19 (179)
350 3foz_A TRNA delta(2)-isopenten 53.7 6.5 0.00022 42.9 3.0 17 506-522 12-28 (316)
351 2ipc_A Preprotein translocase 53.6 34 0.0012 42.6 9.4 70 697-772 102-176 (997)
352 3l9o_A ATP-dependent RNA helic 53.3 14 0.00047 48.0 6.4 66 712-788 225-296 (1108)
353 1z6g_A Guanylate kinase; struc 53.0 8.1 0.00028 39.8 3.5 19 502-520 21-39 (218)
354 2cpq_A FragIle X mental retard 52.9 15 0.00052 32.1 4.6 63 1012-1089 14-78 (91)
355 1tue_A Replication protein E1; 52.6 14 0.00049 37.7 5.1 49 477-528 29-81 (212)
356 2ze6_A Isopentenyl transferase 52.4 7 0.00024 41.4 3.0 16 507-522 4-19 (253)
357 3nwn_A Kinesin-like protein KI 52.2 8.4 0.00029 43.0 3.7 27 496-522 95-123 (359)
358 4a2w_A RIG-I, retinoic acid in 51.9 24 0.00081 45.0 8.2 71 714-788 296-377 (936)
359 3a00_A Guanylate kinase, GMP k 51.7 8.6 0.00029 38.4 3.4 16 505-520 2-17 (186)
360 2r8r_A Sensor protein; KDPD, P 51.3 15 0.0005 38.2 5.0 24 506-529 8-31 (228)
361 1ixz_A ATP-dependent metallopr 51.2 4.4 0.00015 42.7 1.2 54 464-520 10-65 (254)
362 1bg2_A Kinesin; motor protein, 50.8 9.6 0.00033 42.0 3.8 27 496-522 68-96 (325)
363 4etp_A Kinesin-like protein KA 50.6 11 0.00037 42.9 4.3 26 497-522 132-159 (403)
364 1nkt_A Preprotein translocase 50.6 32 0.0011 42.8 8.6 79 704-788 142-237 (922)
365 1kag_A SKI, shikimate kinase I 50.4 9.4 0.00032 37.2 3.4 18 504-521 4-21 (173)
366 4gp7_A Metallophosphoesterase; 50.2 5.9 0.0002 39.0 1.8 20 503-522 8-27 (171)
367 2ewv_A Twitching motility prot 50.1 6.8 0.00023 44.2 2.5 19 502-520 134-152 (372)
368 2qor_A Guanylate kinase; phosp 50.0 9.6 0.00033 38.6 3.5 21 501-521 9-29 (204)
369 3g1w_A Sugar ABC transporter; 50.0 2.5E+02 0.0084 29.4 17.3 27 714-740 186-212 (305)
370 2x8a_A Nuclear valosin-contain 49.9 3.2 0.00011 44.7 -0.2 53 465-520 5-60 (274)
371 1ojl_A Transcriptional regulat 49.8 9.1 0.00031 41.7 3.4 19 503-521 24-42 (304)
372 1zp6_A Hypothetical protein AT 49.7 7.1 0.00024 38.9 2.4 18 503-520 8-25 (191)
373 2ius_A DNA translocase FTSK; n 49.6 16 0.00055 42.9 5.6 21 503-523 166-186 (512)
374 3nwj_A ATSK2; P loop, shikimat 49.5 11 0.00036 40.0 3.8 22 501-522 45-66 (250)
375 1y63_A LMAJ004144AAA protein; 49.5 7.3 0.00025 38.8 2.4 19 503-521 9-27 (184)
376 3cm0_A Adenylate kinase; ATP-b 49.3 6.6 0.00023 38.9 2.1 20 503-522 3-22 (186)
377 1v8k_A Kinesin-like protein KI 49.1 10 0.00036 43.0 3.8 27 496-522 145-173 (410)
378 3dc4_A Kinesin-like protein NO 48.9 11 0.00037 41.9 3.8 26 496-521 85-112 (344)
379 1gmx_A GLPE protein; transfera 48.9 13 0.00046 33.2 3.9 43 708-750 52-95 (108)
380 1znw_A Guanylate kinase, GMP k 48.9 9.3 0.00032 38.8 3.1 21 500-520 16-36 (207)
381 2h58_A Kinesin-like protein KI 48.8 11 0.00037 41.7 3.8 26 496-521 71-98 (330)
382 2vvg_A Kinesin-2; motor protei 48.5 11 0.00037 42.0 3.8 26 496-521 80-107 (350)
383 1ex7_A Guanylate kinase; subst 48.5 8.2 0.00028 38.8 2.6 16 505-520 2-17 (186)
384 3crm_A TRNA delta(2)-isopenten 48.5 8.6 0.0003 42.3 3.0 17 506-522 7-23 (323)
385 3kb2_A SPBC2 prophage-derived 48.4 7.5 0.00026 37.8 2.3 17 506-522 3-19 (173)
386 3b6u_A Kinesin-like protein KI 48.4 10 0.00036 42.5 3.7 26 496-521 92-119 (372)
387 3p32_A Probable GTPase RV1496/ 48.3 1.2E+02 0.0043 33.3 12.7 17 506-522 81-97 (355)
388 1t5c_A CENP-E protein, centrom 48.3 11 0.00036 42.1 3.7 26 496-521 68-95 (349)
389 2nr8_A Kinesin-like protein KI 48.0 11 0.00037 42.2 3.7 26 496-521 94-121 (358)
390 1goj_A Kinesin, kinesin heavy 47.9 11 0.00036 42.2 3.6 25 497-521 72-98 (355)
391 3dmn_A Putative DNA helicase; 47.8 81 0.0028 30.8 9.9 82 696-792 42-124 (174)
392 2zfi_A Kinesin-like protein KI 47.8 11 0.00038 42.2 3.8 26 496-521 80-107 (366)
393 2y65_A Kinesin, kinesin heavy 47.7 12 0.00043 41.8 4.1 26 496-521 75-102 (365)
394 4f4c_A Multidrug resistance pr 47.7 11 0.00038 49.9 4.4 41 615-655 570-610 (1321)
395 1ly1_A Polynucleotide kinase; 47.6 7.9 0.00027 38.0 2.3 16 506-521 4-19 (181)
396 3gbj_A KIF13B protein; kinesin 47.4 11 0.00038 42.0 3.6 26 496-521 83-110 (354)
397 3cwq_A Para family chromosome 47.3 1.2E+02 0.0039 30.6 11.3 19 508-526 5-23 (209)
398 1u94_A RECA protein, recombina 47.3 17 0.00057 40.7 5.1 38 503-548 62-99 (356)
399 1knq_A Gluconate kinase; ALFA/ 47.2 6.9 0.00024 38.4 1.8 19 504-522 8-26 (175)
400 1x88_A Kinesin-like protein KI 47.1 10 0.00035 42.4 3.3 27 496-522 79-107 (359)
401 2c9o_A RUVB-like 1; hexameric 47.0 14 0.00049 42.7 4.8 19 504-522 63-81 (456)
402 1iy2_A ATP-dependent metallopr 46.8 5.9 0.0002 42.5 1.3 52 465-520 35-89 (278)
403 2wbe_C Bipolar kinesin KRP-130 46.6 11 0.00038 42.4 3.5 27 496-522 91-119 (373)
404 3lre_A Kinesin-like protein KI 46.5 11 0.00039 42.0 3.6 25 497-521 97-123 (355)
405 4a14_A Kinesin, kinesin-like p 46.5 13 0.00046 41.2 4.1 25 497-521 75-101 (344)
406 1w36_B RECB, exodeoxyribonucle 46.1 38 0.0013 44.3 9.0 60 506-565 18-81 (1180)
407 3cob_A Kinesin heavy chain-lik 46.0 9.8 0.00033 42.7 2.9 25 497-521 71-97 (369)
408 3flh_A Uncharacterized protein 46.0 9.3 0.00032 35.4 2.4 45 706-750 63-109 (124)
409 3s99_A Basic membrane lipoprot 45.9 3.4E+02 0.012 29.8 16.1 82 541-625 27-118 (356)
410 3t0q_A AGR253WP; kinesin, alph 45.8 10 0.00035 42.2 3.0 27 496-522 76-104 (349)
411 1xjc_A MOBB protein homolog; s 45.8 19 0.00066 35.4 4.8 24 506-530 6-29 (169)
412 3d3q_A TRNA delta(2)-isopenten 45.8 10 0.00035 42.0 3.0 17 506-522 9-25 (340)
413 1tev_A UMP-CMP kinase; ploop, 45.8 7.5 0.00026 38.7 1.8 19 504-522 3-21 (196)
414 4f4c_A Multidrug resistance pr 45.7 19 0.00066 47.7 6.1 41 615-655 1233-1273(1321)
415 3l6u_A ABC-type sugar transpor 45.6 2.8E+02 0.0095 28.7 16.5 26 714-739 194-219 (293)
416 4eun_A Thermoresistant glucoki 45.5 11 0.00038 38.0 3.1 19 503-521 28-46 (200)
417 3foj_A Uncharacterized protein 45.1 10 0.00035 33.5 2.4 37 713-749 55-91 (100)
418 2fz4_A DNA repair protein RAD2 45.0 42 0.0014 34.8 7.6 60 697-771 118-178 (237)
419 3u06_A Protein claret segregat 44.9 13 0.00045 42.3 3.8 26 496-521 129-156 (412)
420 2oca_A DAR protein, ATP-depend 44.9 31 0.001 40.3 7.3 71 714-791 157-234 (510)
421 1f9v_A Kinesin-like protein KA 44.9 11 0.00036 42.1 2.9 26 497-522 76-103 (347)
422 2qnd_A FMR1 protein; KH domain 44.8 39 0.0013 32.2 6.7 71 1015-1092 69-142 (144)
423 2jtq_A Phage shock protein E; 44.6 30 0.001 29.2 5.4 36 713-749 40-76 (85)
424 1s96_A Guanylate kinase, GMP k 44.5 12 0.0004 38.7 3.1 20 501-520 13-32 (219)
425 3bfn_A Kinesin-like protein KI 44.4 10 0.00035 42.7 2.8 24 498-521 91-116 (388)
426 2owm_A Nckin3-434, related to 44.2 13 0.00046 42.6 3.8 26 496-521 127-154 (443)
427 2r62_A Cell division protease 44.0 13 0.00043 39.4 3.4 19 504-522 44-62 (268)
428 1c9k_A COBU, adenosylcobinamid 43.8 20 0.00067 35.8 4.5 33 507-551 2-34 (180)
429 2v54_A DTMP kinase, thymidylat 43.8 7.8 0.00027 39.0 1.6 20 503-522 3-22 (204)
430 2heh_A KIF2C protein; kinesin, 43.5 14 0.00048 41.6 3.7 27 496-522 125-153 (387)
431 2plr_A DTMP kinase, probable t 43.5 8.1 0.00028 39.1 1.7 20 503-522 3-22 (213)
432 1wv9_A Rhodanese homolog TT165 43.4 16 0.00056 31.7 3.5 35 715-749 54-88 (94)
433 3t61_A Gluconokinase; PSI-biol 43.3 9.9 0.00034 38.3 2.3 18 505-522 19-36 (202)
434 1yks_A Genome polyprotein [con 43.2 24 0.00081 40.6 5.7 68 540-622 177-245 (440)
435 3kta_A Chromosome segregation 43.1 13 0.00043 36.7 3.0 16 506-521 28-43 (182)
436 2v6i_A RNA helicase; membrane, 43.0 25 0.00085 40.3 5.9 54 540-598 171-225 (431)
437 3hix_A ALR3790 protein; rhodan 43.0 22 0.00074 31.8 4.3 38 713-750 51-89 (106)
438 4akg_A Glutathione S-transfera 42.7 25 0.00085 49.6 6.7 49 474-523 890-942 (2695)
439 1um8_A ATP-dependent CLP prote 42.7 38 0.0013 37.8 7.3 19 504-522 72-90 (376)
440 2c95_A Adenylate kinase 1; tra 42.6 14 0.00046 36.8 3.2 21 502-522 7-27 (196)
441 3vkg_A Dynein heavy chain, cyt 42.5 18 0.00061 51.6 5.2 48 474-522 873-924 (3245)
442 3eph_A TRNA isopentenyltransfe 42.2 12 0.0004 42.5 2.8 16 507-522 5-20 (409)
443 2r2a_A Uncharacterized protein 42.0 15 0.00051 37.3 3.3 21 506-526 7-27 (199)
444 3eme_A Rhodanese-like domain p 41.9 10 0.00036 33.6 1.9 37 713-749 55-91 (103)
445 2rhm_A Putative kinase; P-loop 41.8 11 0.00036 37.6 2.2 19 504-522 5-23 (193)
446 2bdt_A BH3686; alpha-beta prot 41.8 14 0.00046 36.8 3.0 17 506-522 4-20 (189)
447 1m7g_A Adenylylsulfate kinase; 41.6 11 0.00038 38.3 2.4 31 491-522 13-43 (211)
448 3uie_A Adenylyl-sulfate kinase 41.5 12 0.00042 37.7 2.6 19 503-521 24-42 (200)
449 3ice_A Transcription terminati 41.4 1.2E+02 0.0041 34.1 10.7 31 492-522 159-192 (422)
450 3n89_A Defective in GERM LINE 41.3 69 0.0024 35.6 8.8 72 1011-1090 184-259 (376)
451 3iwh_A Rhodanese-like domain p 41.1 11 0.00038 33.8 1.9 37 713-749 55-91 (103)
452 1f2t_A RAD50 ABC-ATPase; DNA d 40.9 16 0.00053 35.1 3.2 15 506-520 25-39 (149)
453 1rj9_A FTSY, signal recognitio 40.8 21 0.00073 38.8 4.6 19 504-522 102-120 (304)
454 3ksm_A ABC-type sugar transpor 40.8 3.1E+02 0.011 27.9 15.0 26 714-739 186-211 (276)
455 3lnc_A Guanylate kinase, GMP k 40.7 11 0.00036 39.1 2.1 19 503-521 26-44 (231)
456 2wv9_A Flavivirin protease NS2 40.6 21 0.00073 43.4 5.0 68 540-622 410-478 (673)
457 2bwj_A Adenylate kinase 5; pho 40.6 12 0.0004 37.4 2.3 20 503-522 11-30 (199)
458 1ye8_A Protein THEP1, hypothet 40.5 15 0.0005 36.5 3.0 15 506-520 2-16 (178)
459 1ry6_A Internal kinesin; kines 40.4 16 0.00056 40.7 3.6 20 503-522 82-103 (360)
460 2iut_A DNA translocase FTSK; n 40.4 25 0.00085 41.7 5.3 26 504-529 214-239 (574)
461 2rep_A Kinesin-like protein KI 40.4 13 0.00045 41.7 2.9 26 497-522 107-134 (376)
462 4gl2_A Interferon-induced heli 40.3 6.8 0.00023 48.1 0.6 70 715-788 57-142 (699)
463 3rc3_A ATP-dependent RNA helic 40.3 43 0.0015 40.8 7.6 74 542-629 322-401 (677)
464 4fcw_A Chaperone protein CLPB; 39.9 16 0.00056 39.4 3.5 18 505-522 48-65 (311)
465 2fwr_A DNA repair protein RAD2 39.8 39 0.0013 38.9 7.0 76 698-788 119-198 (472)
466 4dzz_A Plasmid partitioning pr 39.6 98 0.0034 30.5 9.3 76 511-601 9-87 (206)
467 2l82_A Designed protein OR32; 39.4 88 0.003 27.6 7.2 50 717-766 5-54 (162)
468 1nks_A Adenylate kinase; therm 39.2 12 0.00041 37.0 2.1 17 506-522 3-19 (194)
469 3o8b_A HCV NS3 protease/helica 39.1 25 0.00086 42.6 5.2 52 540-598 396-447 (666)
470 3sr0_A Adenylate kinase; phosp 39.0 16 0.00054 37.3 3.0 18 506-523 2-19 (206)
471 2i3b_A HCR-ntpase, human cance 39.0 18 0.00061 36.4 3.4 41 615-658 103-145 (189)
472 2f1r_A Molybdopterin-guanine d 38.5 11 0.00038 37.3 1.6 17 506-522 4-20 (171)
473 2pez_A Bifunctional 3'-phospho 38.3 12 0.00041 36.8 1.9 19 503-521 4-22 (179)
474 1ak2_A Adenylate kinase isoenz 38.3 15 0.00053 37.9 2.9 21 503-523 15-35 (233)
475 1e6c_A Shikimate kinase; phosp 38.0 14 0.00047 36.0 2.3 18 505-522 3-20 (173)
476 3b9q_A Chloroplast SRP recepto 37.9 25 0.00087 38.1 4.6 20 503-522 99-118 (302)
477 3qf7_A RAD50; ABC-ATPase, ATPa 37.7 16 0.00056 40.8 3.2 17 506-522 25-41 (365)
478 3umf_A Adenylate kinase; rossm 37.5 17 0.00059 37.4 3.0 20 504-523 29-48 (217)
479 3tif_A Uncharacterized ABC tra 37.5 14 0.00049 38.5 2.4 17 503-519 30-46 (235)
480 1gvn_B Zeta; postsegregational 37.4 12 0.00042 40.3 1.9 17 506-522 35-51 (287)
481 1cke_A CK, MSSA, protein (cyti 37.2 17 0.00058 37.1 3.0 18 505-522 6-23 (227)
482 1zd8_A GTP:AMP phosphotransfer 37.2 17 0.00057 37.4 2.9 19 504-522 7-25 (227)
483 1via_A Shikimate kinase; struc 37.1 19 0.00065 35.2 3.2 17 506-522 6-22 (175)
484 1zuh_A Shikimate kinase; alpha 37.1 17 0.00059 35.2 2.9 18 505-522 8-25 (168)
485 3iek_A Ribonuclease TTHA0252; 37.1 4.9E+02 0.017 29.2 15.8 89 645-740 329-419 (431)
486 3fb4_A Adenylate kinase; psych 37.1 17 0.0006 36.8 3.0 17 506-522 2-18 (216)
487 2iyv_A Shikimate kinase, SK; t 37.0 21 0.0007 35.2 3.5 18 505-522 3-20 (184)
488 3c8u_A Fructokinase; YP_612366 37.0 14 0.00048 37.5 2.3 17 504-520 22-38 (208)
489 1aky_A Adenylate kinase; ATP:A 36.9 18 0.00061 37.0 3.0 19 504-522 4-22 (220)
490 2va8_A SSO2462, SKI2-type heli 36.8 58 0.002 39.9 8.2 76 540-624 252-363 (715)
491 1qf9_A UMP/CMP kinase, protein 36.7 17 0.00059 35.8 2.9 17 506-522 8-24 (194)
492 3zyw_A Glutaredoxin-3; metal b 36.7 87 0.003 28.1 7.4 53 706-758 7-65 (111)
493 1zak_A Adenylate kinase; ATP:A 36.7 20 0.00067 36.7 3.3 19 504-522 5-23 (222)
494 1jjv_A Dephospho-COA kinase; P 36.5 15 0.0005 37.1 2.3 15 507-521 5-19 (206)
495 1in4_A RUVB, holliday junction 36.4 18 0.00063 39.8 3.3 17 505-521 52-68 (334)
496 1np6_A Molybdopterin-guanine d 36.4 22 0.00075 35.2 3.5 23 506-529 8-30 (174)
497 1ukz_A Uridylate kinase; trans 36.3 15 0.00051 36.9 2.3 16 506-521 17-32 (203)
498 1nij_A Hypothetical protein YJ 36.3 22 0.00076 38.8 3.9 14 507-520 7-20 (318)
499 3ipz_A Monothiol glutaredoxin- 36.3 1E+02 0.0034 27.5 7.7 78 702-779 5-88 (109)
500 2if2_A Dephospho-COA kinase; a 36.2 14 0.00049 37.1 2.2 15 507-521 4-18 (204)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-64 Score=598.62 Aligned_cols=389 Identities=39% Similarity=0.658 Sum_probs=361.3
Q ss_pred cCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001261 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 453 ~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+.+.|.++|.|+.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|++.++...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc
Q 001261 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612 (1112)
Q Consensus 533 ~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~ 612 (1112)
.......++++|||+||++||.|++..+.+++...++++.+++||.....+...+..+++|+|+||++|++++....
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--- 198 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---
Confidence 54334458899999999999999999999999988999999999999999988898999999999999999987643
Q ss_pred cccCCceEEEeccchhhhccCChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccE
Q 001261 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 613 ~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q 690 (1112)
..+.++++|||||||+|++++|...+..|+..+ ++.+|+|+||||+|..+..++..++.+++.+.++........+.+
T Consensus 199 ~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEE
T ss_pred cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccce
Confidence 568899999999999999999999999999885 678999999999999999999999999999998877777778888
Q ss_pred EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001261 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 691 ~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
.+.......+...|+.+|.... .++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|..+||||
T Consensus 279 ~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 8888888889999999887743 45999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChhHHH
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDDLKA 846 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~-~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (1112)
|+++++|||||++++|||||+|.++..|+||+||+||.|+.|.|++|+++ .+...+..|++.|....+.||++|..
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 57788999999999999999999864
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.2e-58 Score=540.40 Aligned_cols=392 Identities=42% Similarity=0.689 Sum_probs=353.9
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+.+.|..+|.|+.+|.+++|++.+++.|..+||..|||+|.++||.++.|+++|+++|||||||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred C-------------CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH
Q 001261 535 V-------------AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601 (1112)
Q Consensus 535 ~-------------~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L 601 (1112)
. ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998889999999999999999888988999999999999
Q ss_pred HHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CC--CCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001261 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 602 ~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~ 677 (1112)
..++.... ..+..+++|||||||++++++|...+..++... ++ ..|+|+||||++..+..++..++.+|+.+.
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99887643 467889999999999999999999999998753 32 689999999999999999999999998888
Q ss_pred EcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001261 678 VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 678 i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~ 757 (1112)
+.........+.+.+.......+...+..++......+++||||+++..++.++..|...|+.+..+||++++.+|..++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 87766677778888888888888888888888765678999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+.|++|..+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..|++.+....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHH
Q 001261 838 QVVPDDLKALAD 849 (1112)
Q Consensus 838 ~~vp~~l~~~~~ 849 (1112)
+.+|.+|..++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999999877653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-54 Score=512.57 Aligned_cols=372 Identities=33% Similarity=0.564 Sum_probs=337.1
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
.+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 35567899999999999999999999999999999999999999999999999999999999999876432 2467
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..+..+++|
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~---~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---ccHhheeEE
Confidence 89999999999999999999999989999999999999999988888899999999999999887642 467889999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hh
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DR 700 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k 700 (1112)
||||||+|++++|...+..++..+++..|+|+||||++..+..++..++.+|+.+.+.........+.+.+...... .+
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH
Confidence 99999999999999999999999999999999999999999888889999998887776666666777776655544 47
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+..+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 264 ~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 264 FDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 77777777654 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCCh
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.
T Consensus 343 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999999998888776665654
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.9e-54 Score=504.80 Aligned_cols=378 Identities=31% Similarity=0.545 Sum_probs=325.0
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001261 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
..+..+.+|..++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345667899999999999999999999999999999999999999999999999999999999999886542 246
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+++|||+||++|+.|++..+..++...++.+..++||.....+...+. .+++|+|+||++|.+++.... ..+..++
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~ 185 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 185 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCC
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCc
Confidence 789999999999999999999999999999999999999888877776 678999999999999987643 4577899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES- 698 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~- 698 (1112)
+|||||||++++++|...+..++..+++..|+|+||||++..+..++..++.+|..+.+.........+.+.+......
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 9999999999999999999999999999999999999999999999999999998888777766667777776655544
Q ss_pred hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++||
T Consensus 266 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 266 WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 4666676666553 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHH
Q 001261 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKAL 847 (1112)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~ 847 (1112)
|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..+.+.++.....+|..+.++
T Consensus 345 dip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999999999998888888776554
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.6e-52 Score=492.44 Aligned_cols=371 Identities=33% Similarity=0.554 Sum_probs=331.0
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886542 24678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++...++.+..++|+.....+...+..+++|+|+||++|..++.... ..+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEE
Confidence 9999999999999999999999988999999999999888888888889999999999998886543 4678899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||||++++.+|...+..++..+++..|+|+||||+|..+..++..++..|..+.+... .....+.+.+.......+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHH
Confidence 99999999888888999999999999999999999999999999999999876654432 34455667777777777777
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++.. ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|+
T Consensus 248 ~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 248 CLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 77777765 35679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|..
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999999999999999999989999988887776666654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.2e-51 Score=480.96 Aligned_cols=368 Identities=30% Similarity=0.553 Sum_probs=323.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||++|+.||+..+..++..+ ++.+..++||.....+...+..+ ++|+|+||++|..++.... ..+.++++||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vViD 159 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 159 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEEe
Confidence 999999999999999998776 78999999999888777666654 7999999999999886543 457889999999
Q ss_pred cchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc-cccCCccEEEEecccchhHH
Q 001261 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.... .....+.+.+.......+..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 239 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH
Confidence 9999987 478888999999888899999999999999999999999999887765543 33445666777777778888
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|...|||||+++++|||+|+
T Consensus 240 ~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 240 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 888877664 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..++..+.+.+......+|..
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999999876 4456667777766655556643
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.4e-51 Score=482.60 Aligned_cols=369 Identities=28% Similarity=0.468 Sum_probs=319.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
.+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456889999999999999999999999999999999999987 9999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
++++|||+||++|+.|++..+..+...+ ++.+.+.+++...... ...+++|+|+||++|.+++... ....+.++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhc--CCcChhhC
Confidence 6789999999999999999999998765 6777778877654322 1345799999999999988543 23567889
Q ss_pred eEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc
Q 001261 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 697 (1112)
Q Consensus 619 ~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~ 697 (1112)
++|||||||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.........+.+.+.....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999987 688889999999999999999999999999999999999999888877766666677776665554
Q ss_pred -chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..++..+..++.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 250 ~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 250 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred hHHHHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 4566666666654 45679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCCC
Q 001261 777 GLDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~~~~~~vp 841 (1112)
|||+|++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+......++
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999999994 67899999999999999999999998764 6677777777766555554
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.5e-51 Score=475.65 Aligned_cols=357 Identities=31% Similarity=0.550 Sum_probs=310.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
.+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4679999999999999999999999999999999999998 9999999999999999999999886542 34678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++...++.+..++++..... ...+++|+|+||++|..++... ...+.++++||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iI 150 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFV 150 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC---CcccccCCEEE
Confidence 9999999999999999999999888888888888764322 1236899999999999988653 25688899999
Q ss_pred eccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hh
Q 001261 623 MDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DR 700 (1112)
Q Consensus 623 iDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k 700 (1112)
|||||++.+ ++|...+..++..++++.|+|+||||+++.+..++..++.++..+.+.........+.+.+...... .+
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHH
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHH
Confidence 999999988 7888999999999999999999999999999999999999998877776666666676666655443 45
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...+..++. ....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+
T Consensus 231 ~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 231 FDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp HHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC
T ss_pred HHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc
Confidence 555544444 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHh
Q 001261 781 KELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALE 834 (1112)
Q Consensus 781 ~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~ 834 (1112)
|++++||+|++|+ ++..|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+.
T Consensus 310 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 310 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999 99999999999999999999999998754 444555555554
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-52 Score=491.36 Aligned_cols=374 Identities=30% Similarity=0.525 Sum_probs=190.7
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
...++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999886542 3467
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++||.....+...+. +++|+|+||++|...+.... ..+.++++|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 89999999999999999999999888999999999998877766655 58999999999998886542 457789999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch-h
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD-R 700 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~-k 700 (1112)
||||||++++++|...+..++..+++..|+|+||||+++.+..+...++..|..+.+.........+.+.+....... +
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 999999999999999999999999999999999999999999999999999998887766555555555554433333 5
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...+..++.. ...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 5555555543 346799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~ 845 (1112)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|..+.
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999999999999999998888888888776666665543
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.9e-51 Score=502.36 Aligned_cols=359 Identities=29% Similarity=0.530 Sum_probs=306.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .|+++|+++|||||||++|++|++.++..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78899999999999999999999999876532 2234689999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+.. +++||||||++|++++... ....+..+.+||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--SNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--cccccccCCEEEEECh
Confidence 999999999998743 34678899999998888877754 7999999999999988653 1246788999999999
Q ss_pred hhhhccCChhHHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc----ccccCCccEEEEec
Q 001261 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~----~~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..|..+.+... ......+.+.+...
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99999999999999887764 26799999999999999999999999876665432 22233445544444
Q ss_pred cc-chhHHHHHHH----HHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ......++.. +.......++||||+++..|+.++..|... ++.+..+||+|++.+|..++..|++|...|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 33 3333333333 333244679999999999999999999887 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++.+..++..|.+....
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998888888777643
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-50 Score=466.83 Aligned_cols=357 Identities=34% Similarity=0.588 Sum_probs=321.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 699999999999999999999987653 2477899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.|++..+..++...++.+..++||.....+...+. +++|+|+||++|..++.... ..+.++++||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 99999999999999999999888899999999999887776665 68999999999999886543 457889999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.+.+++|...+..++..+++..++|+||||+++.+..++..++.++..+.... ...+.+.+.......++..+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999889999988876654432 23566666667777888888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..++.. ..+++||||+++..++.++..|...|+.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+++
T Consensus 231 ~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888763 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccC
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~ 838 (1112)
+||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+.....
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999888888888765443
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=504.02 Aligned_cols=365 Identities=28% Similarity=0.480 Sum_probs=178.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
++.+|..++|++.+++.|..+||..|+|+|.++|+.++.+ +++|++|+||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876542 34678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+||++||.|++..+..+...+ ++.+.+.+++...... ...+++||||||++|++++... ....+.++++|
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~i 239 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKVF 239 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CCCCGGGCCEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhc--CCcCcccCCEE
Confidence 9999999999999999999988764 5677777777654321 1335799999999999988553 34567899999
Q ss_pred Eeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-ch
Q 001261 622 VMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
||||||+|++ .+|...+..++..+++.+|+|+||||++..+..++..++.+|..+.+.........+.+.+..... ..
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH
Confidence 9999999987 688889999999999999999999999999999999999999988887766666666666655543 45
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
++..|..++.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||
T Consensus 320 ~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlD 398 (479)
T 3fmp_B 320 KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCc
Confidence 55566665554 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCC
Q 001261 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVV 840 (1112)
Q Consensus 780 i~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~~~~~~v 840 (1112)
+|++++||+|++|. +...|+||+||+||.|+.|.|++|+++.+ ..++..|.+.+......+
T Consensus 399 ip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 399 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999999999995 56899999999999999999999998754 666677777665544443
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-50 Score=497.35 Aligned_cols=359 Identities=29% Similarity=0.526 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .++++|++||||||||++|++|++.++..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999877532 2234678999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+. .+++||||||++|++++.... ...+..+++||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeCH
Confidence 999999999998653 2466888999999888877764 478999999999999886531 235788999999999
Q ss_pred hhhhccCChhHHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc----cccCCccEEEEec
Q 001261 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS----VVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~----~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..+..+.+.... .....+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99999999999999887663 367999999999999999999999988766654322 2233444544444
Q ss_pred cc-chhHHHHHHH----HHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ..++..++.. +......+++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|..+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 33 3333333333 333344679999999999999999999986 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+.+..
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999988888877776543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.9e-48 Score=440.95 Aligned_cols=335 Identities=33% Similarity=0.577 Sum_probs=288.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|++.|.+.|..+||..|+|+|.++|+.++.++++|+++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999999864 56799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC
Q 001261 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g 633 (1112)
.|++..+..++..+++.+..++||.....+...+.. ++|+|+||++|..++.... ..+.++++|||||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS---CCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC---cchhhCcEEEEEChHHhhccc
Confidence 999999999998889999999999988887766654 8999999999998876532 457889999999999999999
Q ss_pred ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc
Q 001261 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 634 f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
|...+..++..++...++++||||+|+.+..+...++.++..+... .....+.+.+....... ...+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~ 219 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW--RSKVQALRE-NK 219 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS--HHHHHHHHT-CC
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH--HHHHHHHHh-CC
Confidence 9999999999999999999999999999999999999888765432 22333444444333322 223344433 34
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
.+++||||+++..++.++..|. .+..+||+++..+|..+++.|++|..+|||||+++++|||+|++++||+|++|+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 6799999999999999998885 688999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHh
Q 001261 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
++..|+||+||+||.|+.|.|++|++ .+...+..|.+.+.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999 77666666665553
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.6e-48 Score=469.39 Aligned_cols=350 Identities=20% Similarity=0.332 Sum_probs=285.5
Q ss_pred CCccccccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 463 PKPIKTWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 463 p~pi~~~~~--~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
+.....|.. +++++.+...|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 344556654 7888999999998 79999999999999999999999999999999999999999842
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---H---hcCCeEEEeCchHHHH---HHHhcCC
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---L---KRGTEIVVCTPGRMID---ILCTSGG 610 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~~~~IvV~Tp~~L~~---~l~~~~~ 610 (1112)
+..+|||+||++|+.|++..+..+ |+.+..++|+......... + ..+++|||+||++|.. ++... .
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l-~ 158 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRL-E 158 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHH-H
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHH-H
Confidence 358999999999999999988875 7889999999887655322 2 3568999999998742 22110 0
Q ss_pred cccccCCceEEEeccchhhhccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC
Q 001261 611 KITNLRRVTYLVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK 686 (1112)
Q Consensus 611 ~~~~l~~i~~vViDEah~~~~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~ 686 (1112)
....+..+++|||||||++++|| |.+.+.. ++....++.++|+||||+++.+...+..++..+..+.+.. .....
T Consensus 159 ~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~ 237 (591)
T 2v1x_A 159 KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRP 237 (591)
T ss_dssp HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCT
T ss_pred hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCc
Confidence 12456789999999999999988 8887765 4555667899999999999998888887776553222221 22333
Q ss_pred CccEEEEeccc--chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001261 687 DITQLVEVRPE--SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 687 ~i~q~~~~~~~--~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
++...+..... ..++..|+.+|......+++||||+++..++.++..|...|+.+..|||+|++.+|..+++.|.+|.
T Consensus 238 nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~ 317 (591)
T 2v1x_A 238 NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317 (591)
T ss_dssp TEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44433332221 3455667777765556789999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHH
Q 001261 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i 829 (1112)
.+|||||+++++|||+|+|++||+|++|.+++.|+|++||+||.|.+|.|++||++.|...+..+
T Consensus 318 ~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987765444333
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-48 Score=471.71 Aligned_cols=369 Identities=29% Similarity=0.451 Sum_probs=264.5
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 461 ~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
..|.++..|...++++.+++.|...||..|+++|.++|+.++.+ +++|++++||||||++|++|++..+... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34566677888899999999999999999999999999999998 9999999999999999999999887543 3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
.++++|||+||++|+.|++..+..++...++.+...+++..... ...+++|+|+||++|..++.... ..+..+
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~ 260 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ---LDARDI 260 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC---SCCTTC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC---ccccCC
Confidence 46789999999999999999999998877777776666553322 23368999999999999886643 457889
Q ss_pred eEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc-
Q 001261 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP- 696 (1112)
Q Consensus 619 ~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~- 696 (1112)
++|||||||++.+ .+|...+..++..+++..|+|+||||+++.+..+...++.++..+.+.........+.+.+....
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS 340 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCc
Confidence 9999999999887 68999999999999999999999999999999999999999988777666666666666655543
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 697 ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
...+...+..++.. ...+++||||+++..|+.++..|...++.+..+||+++..+|..+++.|++|..+|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 34555555555544 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCC------CCHhHHHHHhcccCCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCCh
Q 001261 777 GLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~~i~~~~~-~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++ .+...+..+.+.+......+|.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 9999999999999999 7899999999999999999999999984 5677788888887766666664
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-46 Score=443.19 Aligned_cols=325 Identities=25% Similarity=0.330 Sum_probs=269.1
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 478 IMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 478 l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+.+.++. ++| .|+|+|.++|+.++.|+++|+++|||||||++|++|++..+ ..++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHH
Confidence 3444554 566 79999999999999999999999999999999999988775 2378999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh--
Q 001261 557 HSDIRKFAKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-- 630 (1112)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-- 630 (1112)
+..+..++. .++.+..++||.+. ..++..+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhc
Confidence 999999988 89999999999998 6667777776 99999999999888753 466789999999998654
Q ss_pred --------c-cCChhH-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEEcCcccccCC
Q 001261 631 --------D-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKD 687 (1112)
Q Consensus 631 --------~-~gf~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~~~~p~~i~i~~~~~~~~~ 687 (1112)
+ ++|... +..++..++ +..|+|+|||| +|..+. .+...++. +.+.........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 4 889988 888888887 88999999999 565443 33334433 222233334455
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCcc
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
+.+.+... .+...|..+|.. .++++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|.++
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 66665544 455666666666 348999999999999999999999999998 99994 444 9999999999
Q ss_pred EEEe----cCcccccCCCCC-ccEEEEeCCC--CCHhHHHHHhcccCCCC----CccEEEEEecCCccCchHHHHHHHh
Q 001261 767 LLIA----TSVAARGLDVKE-LELVINFDAP--NHYEDYVHRVGRTGRAG----RKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 767 VLVa----T~v~~~GlDi~~-v~~VI~~d~p--~s~~~y~QriGR~gR~G----~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
|||| |+++++|||+|+ |++||+|++| .++..|+||+||+||.| ..|.||+|+ .+...+..|.+.+.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999987 589999999 56666677777666
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.3e-45 Score=446.32 Aligned_cols=341 Identities=20% Similarity=0.316 Sum_probs=278.2
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 467 KTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
.+|+.++|++.+...|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 99999999999999999999999999999999999999999842 347899
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HH-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---EL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
|+|+++|+.|+...+..+ ++.+..++++........ .+ ...++|+|+||++|...... ......++.+|
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~v 143 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLL 143 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEE
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEE
Confidence 999999999999888764 788888888887665432 22 34589999999998532111 01234679999
Q ss_pred EeccchhhhccC--ChhHHHHHH--HhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEec
Q 001261 622 VMDEADRMFDMG--FEPQITRIV--QNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 622 ViDEah~~~~~g--f~~~i~~il--~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~ 695 (1112)
||||||++.+|| |.+.+..+. ....+..++|+||||+++.+...+...+ .+|..+ +.. ....++. +.+.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceE--EEEE
Confidence 999999999988 766665542 2233678999999999988755444333 455433 322 2223333 3333
Q ss_pred ccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
....+...++.+|... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|..+|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4456777788877653 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+|||+|+|++||+|++|.+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999877665555443
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.4e-46 Score=452.20 Aligned_cols=373 Identities=17% Similarity=0.228 Sum_probs=288.6
Q ss_pred cccccccccccchHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH--------HCCCCCChHHH
Q 001261 424 YQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR--------KLNYEKPMPIQ 494 (1112)
Q Consensus 424 ~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~--------~~~~~~pt~iQ 494 (1112)
+.++-+.++...+.+..++.+++......+...+ .|.. +. +.+..++. .+|| .|||+|
T Consensus 22 ~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld-----~~l~ea~a~vrea~~r~lG~-~pt~VQ 88 (844)
T 1tf5_A 22 YEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TD-----DLLVEAFAVVREASRRVTGM-FPFKVQ 88 (844)
T ss_dssp HHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HH-----HHHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hH-----HHHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 4556666677778899999999987777665433 2221 21 22222222 5899 999999
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
..++|.++.|+ |+.++||+|||++|++|++.+.+. |+.|+||+||++||.|++.++..++..+|+++.++
T Consensus 89 ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 89 LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 999999999999999999955432 56899999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC---------------C
Q 001261 575 YGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------F 634 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g---------------f 634 (1112)
+||.+...+. +..+++|+|+||++| .++|..+- .....++.+.++||||||+|| |++ |
T Consensus 159 ~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 159 LNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp CTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred eCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 9999865543 334699999999999 77776542 123467899999999999998 775 5
Q ss_pred hhHHHHHHHhcCC---------CCcEE-----------------EEeccccHHH---HHH--HHHhcC-CCeEEE-----
Q 001261 635 EPQITRIVQNIRP---------DRQTV-----------------LFSATFPRQV---EIL--ARKVLN-KPVEIQ----- 677 (1112)
Q Consensus 635 ~~~i~~il~~~~~---------~~q~i-----------------l~SAT~~~~~---~~l--~~~~~~-~p~~i~----- 677 (1112)
...+..|+..+++ .+|++ |||||++..+ ... +..++. ++..+.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 6788999999873 68888 9999987533 322 223332 221111
Q ss_pred --Ec-----------------------------Ccccc-----------------------------------------c
Q 001261 678 --VG-----------------------------GRSVV-----------------------------------------N 685 (1112)
Q Consensus 678 --i~-----------------------------~~~~~-----------------------------------------~ 685 (1112)
+. ..... +
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IP 396 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIP 396 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECC
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEec
Confidence 00 00000 0
Q ss_pred --CCc-c---EEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 686 --KDI-T---QLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 686 --~~i-~---q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
..+ . +.+.+.....|+..|+..|.... ...++||||+|+..++.|+..|...|+++.+|||++.+.++..+..
T Consensus 397 tn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ 476 (844)
T 1tf5_A 397 TNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEE 476 (844)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTT
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHH
Confidence 000 0 11233455678888888887643 4568999999999999999999999999999999998888876666
Q ss_pred HhhcCCccEEEecCcccccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 759 DFKSNVCNLLIATSVAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.|+.| .|||||++|+||+||+ ++.+||||++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 477 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 477 AGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 66655 6999999999999999 889999999999999999999999999999999999998775
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-45 Score=471.52 Aligned_cols=330 Identities=18% Similarity=0.219 Sum_probs=262.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|..++++..+...+...++..|+|+|.++|+.++.|+++|++|+||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666777776666666667778999999999999999999999999999999999999988743 6789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++|+.|++..+..++. .+.+++|+... ..+++|+||||++|.+++.... ..+.++++||||||
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEV 299 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhh
Confidence 9999999999999998765 46667887753 3568999999999999987753 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH--HHHHHHHhcCCCeEEEEcCcccccCCccEEEEe---------c
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ--VEILARKVLNKPVEIQVGGRSVVNKDITQLVEV---------R 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~--~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~---------~ 695 (1112)
|+|++++|...+..++..+++..|+|+||||+|+. +..++..+...|+.+....... ..+.+++.. .
T Consensus 300 H~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEE
T ss_pred hhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeee
Confidence 99999999999999999999999999999999874 4466666677776554432211 111111110 0
Q ss_pred cc----------------------------------------------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHH
Q 001261 696 PE----------------------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 696 ~~----------------------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~ 729 (1112)
.. ...+..++..+.. ...+++||||+++..|+.
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHH
Confidence 00 1222233333333 234699999999999999
Q ss_pred HHHHHHhcCCC---------------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001261 730 LFRDLLKHGYP---------------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 730 l~~~L~~~g~~---------------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
++..|...++. +.++||+|++.+|..++..|.+|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99988653222 789999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCC--------CCHhHHHHHhcccCCCC--CccEEEEEecCC
Q 001261 771 TSVAARGLDVKELELVINFDAP--------NHYEDYVHRVGRTGRAG--RKGCAITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p--------~s~~~y~QriGR~gR~G--~~g~~i~~~~~~ 821 (1112)
|+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+++++.
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999987663 47788999999999999 689999888765
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.9e-43 Score=426.78 Aligned_cols=368 Identities=19% Similarity=0.226 Sum_probs=254.6
Q ss_pred chHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHH-----HHCCCCCChHHHHHHHHHHHcCCCEEE
Q 001261 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETI-----RKLNYEKPMPIQAQALPVIMSGRDCIG 509 (1112)
Q Consensus 435 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l-----~~~~~~~pt~iQ~~ai~~il~g~dvii 509 (1112)
.+.+..++.+++......+...+.... ++.++ |+. ....+ ..+|+ .|||+|..++|.++.|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-lpe-afA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-IPE-AFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-HHH-HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-hHH-HHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 345778888888766655543332211 12221 222 22222 23664 89999999999999998 99
Q ss_pred EcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc
Q 001261 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589 (1112)
Q Consensus 510 ~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~ 589 (1112)
.++||||||++|++|++.+... |+.++||+||++||.|++.++..++..+|+++.+++||.+.. ...+..
T Consensus 93 em~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~ 162 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAY 162 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhc
Confidence 9999999999999999966432 568999999999999999999999999999999999999864 344455
Q ss_pred CCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC---------------ChhHHHHHHHhcCC--
Q 001261 590 GTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------FEPQITRIVQNIRP-- 647 (1112)
Q Consensus 590 ~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g---------------f~~~i~~il~~~~~-- 647 (1112)
+++|+|||||+| .++|..+- .....++.+.++||||||+|+ +++ |...+..|+..++.
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~ 242 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQE 242 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhh
Confidence 799999999999 78887542 112457899999999999998 554 56778888888864
Q ss_pred ------------------CCcEE------------------------EEeccccHHHHHH-----HHHhcC---------
Q 001261 648 ------------------DRQTV------------------------LFSATFPRQVEIL-----ARKVLN--------- 671 (1112)
Q Consensus 648 ------------------~~q~i------------------------l~SAT~~~~~~~l-----~~~~~~--------- 671 (1112)
.+|++ +||||++..+..+ +..++.
T Consensus 243 ~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d 322 (853)
T 2fsf_A 243 KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD 322 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeec
Confidence 46654 8999986422211 111111
Q ss_pred ------------------------CC----eEEEEcCcccccCCcc----------------------------------
Q 001261 672 ------------------------KP----VEIQVGGRSVVNKDIT---------------------------------- 689 (1112)
Q Consensus 672 ------------------------~p----~~i~i~~~~~~~~~i~---------------------------------- 689 (1112)
.+ ..+.+...+.....|.
T Consensus 323 ~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv 402 (853)
T 2fsf_A 323 GEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV 402 (853)
T ss_dssp ----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE
T ss_pred CcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE
Confidence 01 1111111111111111
Q ss_pred -------------EEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHH
Q 001261 690 -------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 690 -------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~ 755 (1112)
+.+.+.....|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||++.+.++..
T Consensus 403 ~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~i 482 (853)
T 2fsf_A 403 VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAI 482 (853)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHH
T ss_pred EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 112334556788889888876543 458999999999999999999999999999999999888888
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCc-------------------------------------cEEEEeCCCCCHhHH
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------ELVINFDAPNHYEDY 798 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------~~VI~~d~p~s~~~y 798 (1112)
+...|+.| .|+|||++|+||+||+.. .+||+|++|.+...|
T Consensus 483 ia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy 560 (853)
T 2fsf_A 483 VAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRID 560 (853)
T ss_dssp HHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHH
T ss_pred HHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHH
Confidence 88899888 699999999999999974 699999999999999
Q ss_pred HHHhcccCCCCCccEEEEEecCCccCc
Q 001261 799 VHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+||+|||||.|.+|.+++|++..|..+
T Consensus 561 ~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 561 NQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HhhccccccCCCCeeEEEEecccHHHH
Confidence 999999999999999999999877543
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-42 Score=436.72 Aligned_cols=337 Identities=19% Similarity=0.296 Sum_probs=266.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+.+.+..+||..|+|+|.++|+. +..++++|++||||||||++|.+|++..+... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887642 56899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|++|+++||.|++..++.+ ..+|+.+..++|+....... ...++|+||||++|..++.... ..+.++++||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiD 152 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLD 152 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEEC
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEe
Confidence 9999999999999999644 45689999999987654431 2368999999999999887642 347899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC---------CccEEEEec
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK---------DITQLVEVR 695 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~---------~i~q~~~~~ 695 (1112)
|||.+.+.++...+..++..++ +.|+|+||||+++ ...++..+ ..++ +.....+++.. .....+.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE-EECCCCSSCEEEEEEEECSSTTEEEEEET
T ss_pred chhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc-cCCCCCCCCceEEEEecCCcccceeeecC
Confidence 9999998889989998888887 7899999999985 34555544 3222 11111111100 000011111
Q ss_pred c--------cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------------------------
Q 001261 696 P--------ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG----------------------------- 738 (1112)
Q Consensus 696 ~--------~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g----------------------------- 738 (1112)
. .......+...+. ..+++||||+++..++.++..|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 1 1233333333332 46899999999999999999998642
Q ss_pred -------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC-------CCCCHhHHHH
Q 001261 739 -------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-------APNHYEDYVH 800 (1112)
Q Consensus 739 -------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d-------~p~s~~~y~Q 800 (1112)
+.+.++||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ || .|.+..+|+|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 35899999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HhcccCCCC--CccEEEEEecCCcc
Q 001261 801 RVGRTGRAG--RKGCAITFISEEDA 823 (1112)
Q Consensus 801 riGR~gR~G--~~g~~i~~~~~~d~ 823 (1112)
|+|||||.| ..|.||+|+++.+.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999988 47999999987653
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.6e-43 Score=428.04 Aligned_cols=331 Identities=20% Similarity=0.276 Sum_probs=206.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+|+|.++|+.++.|+++|++++||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999999887643 23377899999999999999999999999
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~~ 644 (1112)
..++.+..++|+.....+...+..+++|+|+||++|.+++.... ...+..+++|||||||++.++++...+. .++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88999999999998777767777779999999999999886532 2367889999999999998876433332 22221
Q ss_pred ----cCCCCcEEEEeccccH-----------HHHHHHHHh------------------cCCCeEEEEcCcccccCC----
Q 001261 645 ----IRPDRQTVLFSATFPR-----------QVEILARKV------------------LNKPVEIQVGGRSVVNKD---- 687 (1112)
Q Consensus 645 ----~~~~~q~il~SAT~~~-----------~~~~l~~~~------------------~~~p~~i~i~~~~~~~~~---- 687 (1112)
..+..|+|+||||++. .+..+...+ ...|....+.........
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1466899999999853 122222211 112211111000000000
Q ss_pred -----------------ccEEE----------------------------------------------------------
Q 001261 688 -----------------ITQLV---------------------------------------------------------- 692 (1112)
Q Consensus 688 -----------------i~q~~---------------------------------------------------------- 692 (1112)
+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred -----------------------------------------------EecccchhHHHHHHHHHhhh---cCCeEEEEeC
Q 001261 693 -----------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFVH 722 (1112)
Q Consensus 693 -----------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~ 722 (1112)
.......|+..|+.+|...+ ...++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 00002446666777776543 4579999999
Q ss_pred CHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEEe
Q 001261 723 SQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999775 5566677888999999999999999 999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 790 d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|+|+++..|+||+|| ||. +.|.||+|+++.+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 999 78999999987654
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.4e-42 Score=437.75 Aligned_cols=335 Identities=21% Similarity=0.280 Sum_probs=270.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+|.+++|++.+.+.|..+||..|+|+|.++|+. ++.++++|++||||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887642 5789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+|+++||.|++..+..+. .+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++||||||
T Consensus 75 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKILVADEI 147 (720)
T ss_dssp CSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC---TTGGGEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh---hhhhcCCEEEEECC
Confidence 999999999999996554 468999999997654332 12368999999999988887632 34788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCC---ccEEEEecc-----cc
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD---ITQLVEVRP-----ES 698 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~---i~q~~~~~~-----~~ 698 (1112)
|.+.++++...+..++..++.+.|+|+||||+++ ...++.. +..+. +.....+.+... ....+.+.. ..
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEW-LNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHH-TTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHH-hCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhh
Confidence 9999989999999999988888999999999986 3445544 33221 111111111000 000111111 12
Q ss_pred hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCeeeec
Q 001261 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLH 745 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~~ih 745 (1112)
.....+...+. ..+++||||+++..|+.++..|... ...+.++|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 33334444443 4689999999999999999998753 13589999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC----CCCCHhHHHHHhcccCCCC--CccEEE
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD----APNHYEDYVHRVGRTGRAG--RKGCAI 815 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d----~p~s~~~y~QriGR~gR~G--~~g~~i 815 (1112)
|+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+|||||.| ..|.||
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 5899999999999999988 579999
Q ss_pred EEecCCc
Q 001261 816 TFISEED 822 (1112)
Q Consensus 816 ~~~~~~d 822 (1112)
+|+++.+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9998776
No 25
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.7e-42 Score=416.85 Aligned_cols=325 Identities=19% Similarity=0.248 Sum_probs=260.9
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++.+.+. |+.|+||+||++||.|++.++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4888 99999999999999998 999999999999999999865442 567999999999999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-c-------
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-D------- 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~------- 631 (1112)
+..+|+++.+++||.+.... .+..+++|+|+||++| .++|..+- .....++.+.++||||||+|| |
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 99999999999999986443 3344699999999999 78886542 123567889999999999998 4
Q ss_pred --------cCChhHHHHHHHhcC---------CCCcEE-----------------EEeccccHH---HHHH--HHHhcC-
Q 001261 632 --------MGFEPQITRIVQNIR---------PDRQTV-----------------LFSATFPRQ---VEIL--ARKVLN- 671 (1112)
Q Consensus 632 --------~gf~~~i~~il~~~~---------~~~q~i-----------------l~SAT~~~~---~~~l--~~~~~~- 671 (1112)
++|...+..|+..++ +.+|++ +||||++.. +... +..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 357789999999997 678998 999998753 3222 222322
Q ss_pred C-------CeEEEEcCc-----------------------------ccccCCcc--------------------------
Q 001261 672 K-------PVEIQVGGR-----------------------------SVVNKDIT-------------------------- 689 (1112)
Q Consensus 672 ~-------p~~i~i~~~-----------------------------~~~~~~i~-------------------------- 689 (1112)
+ +..+.+... +.....|.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 111111100 00000011
Q ss_pred ---------------------EEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 690 ---------------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 690 ---------------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+.++......|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 012334456788888888876544 4589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc--------------------------------------------
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------------- 783 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------------- 783 (1112)
+.+.++..+.+.|+.| .|+|||++|+||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888887788888877 699999999999999975
Q ss_pred --------cEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 784 --------ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 784 --------~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.+||+|+.|.+...|+|++||+||.|.+|.+++|++..|.
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.5e-42 Score=423.09 Aligned_cols=331 Identities=23% Similarity=0.290 Sum_probs=233.1
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.+|+|+|.++|+.++.|+++|++++||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3699999999999999999999999999999999999999987653 2347789999999999999999999999988
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH-HHHHHHhc-
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ-ITRIVQNI- 645 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~-i~~il~~~- 645 (1112)
++.+..++|+.....+...+..+++|+|+||++|..++.... ...+.++++|||||||++.+.+.... +..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999999997776666666779999999999999886542 23678899999999999987653222 22333222
Q ss_pred ----CCCCcEEEEeccccHH-----------HHHHHHHhcCCCeEEEEcCc-----ccccCCccEEEEe-----------
Q 001261 646 ----RPDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGGR-----SVVNKDITQLVEV----------- 694 (1112)
Q Consensus 646 ----~~~~q~il~SAT~~~~-----------~~~l~~~~~~~p~~i~i~~~-----~~~~~~i~q~~~~----------- 694 (1112)
.+..|+|+||||++.. +..+. ..+..+........ ............+
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2567999999998542 11111 11221111111100 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001261 695 -------------------------------------------------------------------------------- 694 (1112)
Q Consensus 695 -------------------------------------------------------------------------------- 694 (1112)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------cccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 695 --------------------------------------------------RPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 695 --------------------------------------------------~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
.....|+..|..+|.... ..+++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 012346666666776543 347999999
Q ss_pred CCHHHHHHHHHHHHhcC------------CCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKHG------------YPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~g------------~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|...+ ..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999998763 344556669999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCch
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~ 826 (1112)
||+|+++..|+||+|| ||. ..|.||+|+++.+....
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9999999999999999 998 79999999988765444
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.2e-42 Score=447.26 Aligned_cols=373 Identities=24% Similarity=0.304 Sum_probs=287.3
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|| .|||+|.++||.++.|+|+|++|+||||||++|+++++..+. .++++|||+||++||.|++..+..|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4788 699999999999999999999999999999988888887652 3789999999999999999999998
Q ss_pred hhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh----------h
Q 001261 564 AKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR----------M 629 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~----------~ 629 (1112)
+ ..++.+.+++||.+. ..+...+..+ ++|||+||++|++++.. ..+.++++|||||||+ |
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 7 778999999999988 6777888876 99999999999888753 5678899999999964 5
Q ss_pred hc-cCChhH-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEEcCcccccCCccEEEEe
Q 001261 630 FD-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (1112)
Q Consensus 630 ~~-~gf~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~ 694 (1112)
++ +||... +..++..++ .+.|+|+|||| +|..+. .+...++. +.+........++.+.+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEES
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEe
Confidence 56 899998 899999887 88999999999 565543 23333333 3333444455566666655
Q ss_pred cccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCccEEEe---
Q 001261 695 RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCNLLIA--- 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~F~~g~~~VLVa--- 770 (1112)
. .+...|+.+|.. .++++||||+++..|+.++..|...|+.+. .+|| +|.. ++.|++|.++||||
T Consensus 295 ~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 295 S---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp C---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred c---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 4 456666777766 248999999999999999999999999998 9999 2555 99999999999999
Q ss_pred -cCcccccCCCCC-ccEEEEeCCCC-------------------------------------------------------
Q 001261 771 -TSVAARGLDVKE-LELVINFDAPN------------------------------------------------------- 793 (1112)
Q Consensus 771 -T~v~~~GlDi~~-v~~VI~~d~p~------------------------------------------------------- 793 (1112)
|+++++|||||+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~ 443 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKE 443 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999 99999999998
Q ss_pred -----------------CHhHHHHHhcccCCCCC----ccEEEEEecCCccCchHHHHHHHhhc--cCCCC---hhHHHH
Q 001261 794 -----------------HYEDYVHRVGRTGRAGR----KGCAITFISEEDAKYSPDLVKALELS--EQVVP---DDLKAL 847 (1112)
Q Consensus 794 -----------------s~~~y~QriGR~gR~G~----~g~~i~~~~~~d~~~~~~i~~~l~~~--~~~vp---~~l~~~ 847 (1112)
++.+|+||+|||||.|. .|.+++|+ +|...+..|.+.+... ....| .+|..+
T Consensus 444 ~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 521 (1104)
T 4ddu_A 444 MFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 521 (1104)
T ss_dssp HCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHH
T ss_pred ccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHH
Confidence 77899999999999653 34555555 7888888888887632 11111 234444
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHH
Q 001261 848 ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQA 890 (1112)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~ 890 (1112)
...+...... ..... ..+-.+-+-++++....+...+.++.
T Consensus 522 ~~~i~~~r~~-~~~~~-~~~m~~~LvIaEkPs~Ak~ia~~Lg~ 562 (1104)
T 4ddu_A 522 VHEVEESRRR-SEREL-TDTSRSLLIIVESPTKAETLSRFLGR 562 (1104)
T ss_dssp HHHHHHHHHH-HHSCC-CCCCBCEEEEESCHHHHHHHHHHHTC
T ss_pred HHHHhHHHHH-hhhhh-hHhcCCeEEEEECHHHHHHHHHHhCC
Confidence 4433322221 10000 11223445666666666655555553
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.1e-43 Score=438.66 Aligned_cols=331 Identities=21% Similarity=0.286 Sum_probs=264.5
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 468 TWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 468 ~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+|.+++ |++.+.+.|..+||..|+|+|.++++.++.++++|++||||||||++|.+|++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577788 9999999999999999999999999999999999999999999999999999988763 568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++|+++||.|++..++.+ ..+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++|||||
T Consensus 74 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE 146 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDE 146 (702)
T ss_dssp EESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEee
Confidence 999999999999999654 4468999999998765432 12368999999999998887632 3478899999999
Q ss_pred chhhhccCChhHHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEE------Eecc
Q 001261 626 ADRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV------EVRP 696 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~------~~~~ 696 (1112)
||.+.++++...+..++..+ +++.|+|+||||+++ ...++.. +..++ +.....+.+ +...+ .+..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~r~~~---l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADY-YVSDWRPVP---LVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EECCCCSSC---EEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccCCCCCcc---ceEEEeeCCeeeccC
Confidence 99999988888888877665 578999999999986 4555554 44332 222222211 11111 1111
Q ss_pred cc-------hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------CC
Q 001261 697 ES-------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------GY 739 (1112)
Q Consensus 697 ~~-------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------g~ 739 (1112)
.. .....+...+. ..+++||||+++..++.++..|... ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 11 13333444432 4689999999999999999988753 24
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC---CCCCHhHHHHHhcccCCCC--C
Q 001261 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD---APNHYEDYVHRVGRTGRAG--R 810 (1112)
Q Consensus 740 ~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d---~p~s~~~y~QriGR~gR~G--~ 810 (1112)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+||+||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 6889999999999999999999999999999999999999999999999 76 7899999999999999998 4
Q ss_pred ccEEEEEecCCc
Q 001261 811 KGCAITFISEED 822 (1112)
Q Consensus 811 ~g~~i~~~~~~d 822 (1112)
.|.||+|+++.+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 799999998765
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.6e-43 Score=441.09 Aligned_cols=339 Identities=22% Similarity=0.271 Sum_probs=225.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++|||+||++|+.||+..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999887643 12347899999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCC-hhHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf-~~~i 638 (1112)
+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+.... +..+..+++|||||||++.+... ...+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999888999999999987665666666789999999999999886532 23578899999999999875431 1111
Q ss_pred HHHHHh-----cCCCCcEEEEecccc-------HH-HHHHHH---------------------HhcCCCeEEEEcCcc--
Q 001261 639 TRIVQN-----IRPDRQTVLFSATFP-------RQ-VEILAR---------------------KVLNKPVEIQVGGRS-- 682 (1112)
Q Consensus 639 ~~il~~-----~~~~~q~il~SAT~~-------~~-~~~l~~---------------------~~~~~p~~i~i~~~~-- 682 (1112)
..++.. ..+..++|+||||+. .. +..+.. .+...|.........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 112221 246789999999986 11 222211 111222211100000
Q ss_pred c-------c-----------------------------------------------------------------------
Q 001261 683 V-------V----------------------------------------------------------------------- 684 (1112)
Q Consensus 683 ~-------~----------------------------------------------------------------------- 684 (1112)
. .
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------cCCccEEEEe----------------cccchhHHHHHHHHHhhh---cC
Q 001261 685 -------------------------------NKDITQLVEV----------------RPESDRFLRLLELLGEWY---EK 714 (1112)
Q Consensus 685 -------------------------------~~~i~q~~~~----------------~~~~~k~~~ll~~l~~~~---~~ 714 (1112)
...+.+.+.. .....|+..|..+|.... ..
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000000000 013457777777777653 45
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC----CCeeee--------cCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHG----YPCLSL--------HGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g----~~~~~i--------hg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~ 781 (1112)
+++||||+++..++.|+..|...+ +.+..+ ||+|++.+|..+++.|++ |.++|||||+++++|||||
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 799999999999999999999987 888888 559999999999999998 9999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+|++||+||+|+++..|+||+|| ||. +.|.|++|++..+...
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999 998 6899999998766533
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.3e-43 Score=452.41 Aligned_cols=324 Identities=19% Similarity=0.300 Sum_probs=265.8
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 480 ETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
+.+. .+||. | |+|.++||.++.|+|+|++|+||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3343 48999 9 9999999999999999999999999998 99999888764 36899999999999999999
Q ss_pred HHHHHhhhcCc----eEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGV----RCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++ .+.+++||.+...+ ...+.. ++|+||||++|++++.. |.++++|||||||+|++
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh
Confidence 99999998888 89999999988764 444555 99999999999887632 66899999999999998
Q ss_pred cCChhHHHHHHHhc-----------CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 632 MGFEPQITRIVQNI-----------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 632 ~gf~~~i~~il~~~-----------~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|...+..++..+ +...|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhH
Confidence 567777777665 4568999999999877 5444455554544445544555556666554 3455
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe----cCcccc
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA----TSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa----T~v~~~ 776 (1112)
...|..++... ++++||||+++..|+.++..|... +.+..+||++. .+++.|++|.++|||| |+++++
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 56666666653 578999999999999999999988 99999999984 7889999999999999 999999
Q ss_pred cCCCCCc-cEEEEeCCC---------------------------------------------------------------
Q 001261 777 GLDVKEL-ELVINFDAP--------------------------------------------------------------- 792 (1112)
Q Consensus 777 GlDi~~v-~~VI~~d~p--------------------------------------------------------------- 792 (1112)
|||||+| ++||+|++|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999995 999999999
Q ss_pred --------CCHhHHHHHhcccCCCCCcc--EEEEEecCCccCchHHHHHHHhh
Q 001261 793 --------NHYEDYVHRVGRTGRAGRKG--CAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 793 --------~s~~~y~QriGR~gR~G~~g--~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
.+...|+||+|||||.|..| .+++|+...+...+..|.+.+..
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987766 48888888888888888888874
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2e-41 Score=431.38 Aligned_cols=332 Identities=20% Similarity=0.265 Sum_probs=213.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++||||||++|+.||+..+..++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999987643 2347789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~ 643 (1112)
...++.+..++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--cccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999877777777788999999999999988653 22367889999999999988765333322 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHHH------------------hcCCCeEEEEcCcccccCC---
Q 001261 644 NI----RPDRQTVLFSATFPR-----------QVEILARK------------------VLNKPVEIQVGGRSVVNKD--- 687 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~~------------------~~~~p~~i~i~~~~~~~~~--- 687 (1112)
.. .+..|+|+||||++. .+..+... ++..|....+.........
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 21 566899999999852 22222211 1122211110000000000
Q ss_pred ------------ccE---------E--E----------------------------------------------------
Q 001261 688 ------------ITQ---------L--V---------------------------------------------------- 692 (1112)
Q Consensus 688 ------------i~q---------~--~---------------------------------------------------- 692 (1112)
+.. . .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 0 0
Q ss_pred ------------------------------------------------EecccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 693 ------------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 693 ------------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
.......|+..|+.+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 00002346666667776532 457999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999873 5667778999999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+|+|+..|+||+|| ||. +.|.||+|++..+.
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999999 999 79999999987653
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4e-41 Score=438.38 Aligned_cols=370 Identities=19% Similarity=0.217 Sum_probs=287.9
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHc----CC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 472 TGLTSKIMETIR-KLNYEKPMPIQAQALPVIMS----GR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 472 ~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~----g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
++++..+...+. .++|. |||+|.++|+.++. |+ ++|++++||||||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 445566666554 57875 79999999999986 65 9999999999999999999987754 367999
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|||||++||.||+..+..++..+++.+..++|+.+.... +..+..| ++|||+||+.|.. ...+.++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~--------~~~~~~l~l 728 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS--------DVKFKDLGL 728 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS--------CCCCSSEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--------Cccccccce
Confidence 999999999999999999888888999998887766544 3445554 8999999986521 246789999
Q ss_pred EEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||||+ |......++..++...++|+||||+++....++...+.++..+. ..+.....+...+.... .
T Consensus 729 vIiDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~--~~~~~r~~i~~~~~~~~---~ 798 (1151)
T 2eyq_A 729 LIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA--TPPARRLAVKTFVREYD---S 798 (1151)
T ss_dssp EEEESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC--CCCCBCBCEEEEEEECC---H
T ss_pred EEEechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe--cCCCCccccEEEEecCC---H
Confidence 99999999 34566777888888899999999998777666666555543322 12222223333333222 2
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
......++.....++++||||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|.++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222233344445789999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCC-CCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001261 779 DVKELELVINFDA-PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 779 Di~~v~~VI~~d~-p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
|||++++||++++ ++++..|+||+||+||.|+.|.||+|+.+.+. ......+.+. .+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~-l~~~~~~rl~-------------------~i-- 936 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA-MTTDAQKRLE-------------------AI-- 936 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGG-SCHHHHHHHH-------------------HH--
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCccc-cCHHHHHHHH-------------------HH--
Confidence 9999999999998 56899999999999999999999998865432 2222222221 11
Q ss_pred hhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCC
Q 001261 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (1112)
Q Consensus 858 ~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~ 895 (1112)
.....-|.||.++..++++|++++.++..|+|+
T Consensus 937 -----~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~ 969 (1151)
T 2eyq_A 937 -----ASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 969 (1151)
T ss_dssp -----TTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -----HHhhccCCcchHHHHHhccCCCcccCCccccCC
Confidence 111223679999999999999999999999984
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.2e-43 Score=434.16 Aligned_cols=362 Identities=18% Similarity=0.236 Sum_probs=268.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|.++|+.|+.+ +++|++|+||||||++|++|++..+.. |.++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 345556678999 9999999999999876 699999999999999999999988754 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+..++..+++++.+++|+...... +..+..| ++|||+||+.|.+. ..+.++++|||||
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------~~~~~l~lVVIDE 498 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh--------hhccCCceEEecc
Confidence 9999999999999998889999999999887654 3445554 89999999977431 4678899999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
+|++... ....+.......++|+||||+++....+ .++.+.....+...+.....+... .....+...++
T Consensus 499 aHr~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~~l~ 568 (780)
T 1gm5_A 499 QHRFGVK-----QREALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTM---LVPMDRVNEVY 568 (780)
T ss_dssp CCCC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEEC---CCCSSTHHHHH
T ss_pred cchhhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEE---EeccchHHHHH
Confidence 9996321 1222333445789999999987665433 333333222222222112222221 12233445566
Q ss_pred HHHHhhh-cCCeEEEEeCCH--------HHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 706 ELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 706 ~~l~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
..+.... .+++++|||++. ..++.++..|.. .++.+..+||+|++.+|..+++.|++|.++|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 6665544 456899999965 457788888887 4789999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHH
Q 001261 774 AARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~ 852 (1112)
+++|||||++++||+|++|. +...|.||+||+||.|..|.||+|+++.+... ...++.+..
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~-~~rl~~l~~----------------- 710 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEA-MERLRFFTL----------------- 710 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHH-HHHHHHHHT-----------------
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHH-HHHHHHHHh-----------------
Confidence 99999999999999999996 68889999999999999999999987322111 111111100
Q ss_pred HHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 853 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...||.+++.++++|+.++.++.+|+|+..
T Consensus 711 ---------------~~dgf~iae~dL~~Rg~gd~lG~~qsg~~~ 740 (780)
T 1gm5_A 711 ---------------NTDGFKIAEYDLKTRGPGEFFGVKQHGLSG 740 (780)
T ss_dssp ---------------CCCSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred ---------------hhccchhhHhhHhccCcchhhhhhhcCCCc
Confidence 135788888899999999999999999744
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=424.70 Aligned_cols=312 Identities=19% Similarity=0.260 Sum_probs=252.1
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++|. |+|+|.++|+.++.|+++|+++|||||||++|+++++..+.. +.++||++||++|+.|++..+..+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHH
Confidence 35664 999999999999999999999999999999999999987643 678999999999999999999987
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+. .+..++|+.... .+++|+||||++|..++.... ..+.++++|||||||+|.++++...+..++.
T Consensus 153 ~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 153 FG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred hC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 65 567788877543 358999999999998887643 4678899999999999999999999999999
Q ss_pred hcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEEcCcccccCCccEEEEec---------cc---------------
Q 001261 644 NIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNKDITQLVEVR---------PE--------------- 697 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~--~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~---------~~--------------- 697 (1112)
.+++..|+|+||||+|+... .++......++.+....... ..+.+.+... ..
T Consensus 219 ~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred hcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 99999999999999987543 33334445666554432211 1122222110 00
Q ss_pred -------------------------------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC------
Q 001261 698 -------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP------ 740 (1112)
Q Consensus 698 -------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~------ 740 (1112)
...+..++..+.. ...+++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 1112223333332 13458999999999999999998765443
Q ss_pred ---------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE
Q 001261 741 ---------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (1112)
Q Consensus 741 ---------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI 787 (1112)
+.++||+|++.+|..++..|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 78899999999999999999999999999999999999999999999
Q ss_pred E----eCC----CCCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 788 N----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 788 ~----~d~----p~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
+ ||. |.++..|+||+||+||.|. .|.||+|+++.
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9 999 8999999999999999996 59999999865
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.3e-40 Score=393.42 Aligned_cols=321 Identities=22% Similarity=0.305 Sum_probs=251.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|.++++.++.+ ++|++++||+|||++++++++..+.. .+.++||||||++|+.||+.++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999999 99999999999999999999988762 356899999999999999999999874444
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
..+..++|+........ +..+++|+|+||+.|...+.... ..+..+++|||||||++.+......+...+....+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 58888888887665433 33458999999999998876532 467889999999999998665555566666666788
Q ss_pred CcEEEEeccccHH---HHHHHHHhcCCCeEEEEcCcccc----cCCccEEEE----------------------------
Q 001261 649 RQTVLFSATFPRQ---VEILARKVLNKPVEIQVGGRSVV----NKDITQLVE---------------------------- 693 (1112)
Q Consensus 649 ~q~il~SAT~~~~---~~~l~~~~~~~p~~i~i~~~~~~----~~~i~q~~~---------------------------- 693 (1112)
.++|+||||++.. +..+...+...++.+........ .......+.
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999743 33343333222211110000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001261 694 -------------------------------------------------------------------------------- 693 (1112)
Q Consensus 694 -------------------------------------------------------------------------------- 693 (1112)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ---------------------ecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC---
Q 001261 694 ---------------------VRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--- 746 (1112)
Q Consensus 694 ---------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg--- 746 (1112)
......|+..|..+|.... ..+++||||++...++.++..|...|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 0023456667777777653 5679999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 747 -----AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 747 -----~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+|+..+|..+++.|++|.++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+ |.+|+|+++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999876
Q ss_pred c
Q 001261 822 D 822 (1112)
Q Consensus 822 d 822 (1112)
+
T Consensus 476 t 476 (494)
T 1wp9_A 476 T 476 (494)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-40 Score=425.41 Aligned_cols=332 Identities=20% Similarity=0.274 Sum_probs=212.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++|||+||++|+.||+..+..++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999998876542 2336789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~ 643 (1112)
...++.+..++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++...+....+. .++.
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--ccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999777666666667999999999999988653 22367889999999999988765322222 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHH------------------HhcCCCeEEEEcCcccccCC---
Q 001261 644 NI----RPDRQTVLFSATFPR-----------QVEILAR------------------KVLNKPVEIQVGGRSVVNKD--- 687 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~------------------~~~~~p~~i~i~~~~~~~~~--- 687 (1112)
.. .+..|+|+||||++. .+..+.. .++..|....+.........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 21 566899999999852 2222211 12222221111000000000
Q ss_pred ---------------------ccEE--EE---------------------------------------------------
Q 001261 688 ---------------------ITQL--VE--------------------------------------------------- 693 (1112)
Q Consensus 688 ---------------------i~q~--~~--------------------------------------------------- 693 (1112)
+.+. ..
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00
Q ss_pred -------------------------------------------------ecccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 694 -------------------------------------------------VRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 694 -------------------------------------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
......|+..|..+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0002345566666776543 357999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5666677999999999999999998 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+|+|+..|+||+|| ||. ..|.||+|++..+.
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999 998 68999999987543
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=418.99 Aligned_cols=329 Identities=21% Similarity=0.297 Sum_probs=229.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~~~~~~~~ 566 (1112)
..|+|+|.++|+.++.|+++|++++||+|||++|++|++.++...+. .+.+..+|||+||++|+.|| +..+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36999999999999999999999999999999999999988765311 12346899999999999999 9999998765
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CcccccCCceEEEeccchhhhccCChhHHHH-HH
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITR-IV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~gf~~~i~~-il 642 (1112)
++.+..++|+.........+..+++|||+||++|...+.... .....+..+++|||||||++...++...+.. ++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 588999999987666556666789999999999998773221 1234678899999999999865444433333 22
Q ss_pred Hh----cC---------CCCcEEEEeccccHH-----------HHHHHHHhc------------------CCCeEEEEcC
Q 001261 643 QN----IR---------PDRQTVLFSATFPRQ-----------VEILARKVL------------------NKPVEIQVGG 680 (1112)
Q Consensus 643 ~~----~~---------~~~q~il~SAT~~~~-----------~~~l~~~~~------------------~~p~~i~i~~ 680 (1112)
.. .. +..++|+||||++.. +..+...+. ..|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 12 678999999999862 222222111 1221111000
Q ss_pred cccccC-----------------Cc---cEE-------------------------------------------------
Q 001261 681 RSVVNK-----------------DI---TQL------------------------------------------------- 691 (1112)
Q Consensus 681 ~~~~~~-----------------~i---~q~------------------------------------------------- 691 (1112)
...... .+ ...
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 000
Q ss_pred --------------------------EEec-------------------------ccchhHHHHHHHHHhhh---c-CCe
Q 001261 692 --------------------------VEVR-------------------------PESDRFLRLLELLGEWY---E-KGK 716 (1112)
Q Consensus 692 --------------------------~~~~-------------------------~~~~k~~~ll~~l~~~~---~-~~~ 716 (1112)
..+. ....|+..|+.+|...+ . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 01122223344444432 2 679
Q ss_pred EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCC--------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 717 ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGA--------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~--------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
+||||+++..++.|+..|... |+.+..+||+ |++.+|..++..|++|.++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|++||+||+|+|+..|+||+||+||.| .+++|+...+
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 999999999999999999999977654 4555554433
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.3e-39 Score=411.21 Aligned_cols=308 Identities=19% Similarity=0.244 Sum_probs=243.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++| .|+|+|.++|+.++.|+++|++++||||||++|+++++..+.. ++++||++||++|+.|++..+..++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 455 4899999999999999999999999999999999998876543 6789999999999999999998865
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
. ++.+..++|+.... ..++|+|+||++|..++.... ..+.++++|||||||++.+++|...+..++..
T Consensus 107 ~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp ----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred C--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 4 67888889887532 458999999999999887643 45788999999999999999999999999999
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEEc-CcccccCCccEEE----------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVG-GRSVVNKDITQLV---------------------------- 692 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~---~~p~~i~i~-~~~~~~~~i~q~~---------------------------- 692 (1112)
+++..|+|+||||+|+.. .++..+. ..++.+... .... .+.+.+
T Consensus 175 l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~---pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPV---PLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSS---CEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCc---cceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 999999999999998654 3444332 122222211 1110 011100
Q ss_pred -----------------------------------------------------------------EecccchhHHHHHHH
Q 001261 693 -----------------------------------------------------------------EVRPESDRFLRLLEL 707 (1112)
Q Consensus 693 -----------------------------------------------------------------~~~~~~~k~~~ll~~ 707 (1112)
.......++..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 001122334556666
Q ss_pred HHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------------------------CeeeecCCC
Q 001261 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGY---------------------------------------PCLSLHGAK 748 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~ihg~~ 748 (1112)
|... ..+++||||+++..|+.++..|...++ .+..+||+|
T Consensus 331 l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 331 LRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 6542 356999999999999999999977655 578999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC---------CHhHHHHHhcccCCCC--CccEEEEE
Q 001261 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------s~~~y~QriGR~gR~G--~~g~~i~~ 817 (1112)
++.+|..++..|.+|.++|||||+++++|||+|+ ..||++++|. ++..|+||+|||||.| ..|.||++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5555555555 9999999999999998 56777777
Q ss_pred ec
Q 001261 818 IS 819 (1112)
Q Consensus 818 ~~ 819 (1112)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.2e-38 Score=344.32 Aligned_cols=238 Identities=47% Similarity=0.838 Sum_probs=220.9
Q ss_pred cCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 441 MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 441 ~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
++.+++..++..+.+.+.|..+|.|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchH
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 600 (1112)
|++|++.++..++......++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987665555678999999999999999999999999999999999999999999988898999999999999
Q ss_pred HHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 601 L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
|.+++.... ..+.++.+|||||||+|++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.|.++.
T Consensus 163 l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 163 LIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999987643 46889999999999999999999999999999999999999999999999999999999999988865
Q ss_pred c
Q 001261 681 R 681 (1112)
Q Consensus 681 ~ 681 (1112)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 3
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.1e-40 Score=408.13 Aligned_cols=323 Identities=16% Similarity=0.172 Sum_probs=244.7
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 472 ~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+++++.+.+.|... +..|+|+|++++|.++.|+++|++++||||||++|++|++..+.. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34444444444332 478899999899999999999999999999999999999988765 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
||.|++..+.. +.+.. .+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +
T Consensus 227 La~Qi~~~l~~------~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 227 VAAEMEEALRG------LPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHTTT------SCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHhcC------CceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-C
Confidence 99999987752 23321 111100 001134577888988887766543 35888999999999998 7
Q ss_pred cCChhHHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHh
Q 001261 632 MGFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
++|...+..|+..++ +++|+|+||||++..+..++. .++..+.+... . ....+..++..|..
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~-------------~~~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I-------------PERSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C-------------CSSCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C-------------CHHHHHHHHHHHHh
Confidence 778888888887775 789999999999876443222 23333332211 0 00111223333433
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE----
Q 001261 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV---- 786 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V---- 786 (1112)
..+++||||+++..|+.++..|...++.+..+||. +|..+++.|++|..+|||||+++++||||| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999984 678899999999999999999999999997 8888
Q ss_pred ----------------EEeCCCCCHhHHHHHhcccCCCCC-ccEEEEEec---CCccCchHHHHHHHhhccCCCCh
Q 001261 787 ----------------INFDAPNHYEDYVHRVGRTGRAGR-KGCAITFIS---EEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 787 ----------------I~~d~p~s~~~y~QriGR~gR~G~-~g~~i~~~~---~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|+|++|.+.++|+||+||+||.|. .|.||+|++ +.+...+..|...+......+|.
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 778889999999999999999965 899999998 78888888888887766666654
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.1e-39 Score=385.60 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=218.5
Q ss_pred CCCCChHHHHHHHHHHHcCCCE-EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDC-IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dv-ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|+.+|+|+|. +||.++.++++ |++++||||||++|++|++.++.. .++++|||+||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6789999985 79999999988 888999999999999999987665 36789999999999999998774
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH-
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ- 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~- 643 (1112)
++.+....+.... ....+..|.|+|++.|...+... ..|.++++|||||||++ +.++...+..+..
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333222221111 11235679999999998877543 45788999999999976 4433333333322
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCC
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s 723 (1112)
...++.|+|+||||+|..+..+ +..++..+.+.. ..+... +..++..+.. ..+++||||++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~-------------~~~~~~~l~~--~~~~~lVF~~s 197 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS-------------WNTGFDWITD--YQGKTVWFVPS 197 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC-------------CSSSCHHHHH--CCSCEEEECSS
T ss_pred hcCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCchh-------------hHHHHHHHHh--CCCCEEEEcCC
Confidence 3456899999999998754322 233443333321 111000 0111223333 35799999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeC-------------
Q 001261 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD------------- 790 (1112)
Q Consensus 724 ~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d------------- 790 (1112)
+..|+.++..|...|+.+..+||.+. ..++..|++|..+|||||+++++|||||+ ++||||+
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~ 272 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPE 272 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccc
Confidence 99999999999999999999999765 57899999999999999999999999999 9999999
Q ss_pred -------CCCCHhHHHHHhcccCCCCC-ccEEEEEecC
Q 001261 791 -------APNHYEDYVHRVGRTGRAGR-KGCAITFISE 820 (1112)
Q Consensus 791 -------~p~s~~~y~QriGR~gR~G~-~g~~i~~~~~ 820 (1112)
+|.+..+|+||+||+||.|. .|.|++|+..
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888754
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.2e-39 Score=402.32 Aligned_cols=338 Identities=20% Similarity=0.261 Sum_probs=253.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
+.++..|..++|++.+.+.|...+ ..|+++|.++|+.++.+ ++++++|+||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456789999999999999999888 78999999999988854 679999999999998 45555222111 112367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
.++|++|+++||.|++..+... +++.+...+|+...... ....+++|+|+|||+|...+... ..+.++++|
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~l 212 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED----HDLSRYSCI 212 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEE
Confidence 7999999999999998766443 34333333332211100 11235799999999999887653 468899999
Q ss_pred Eeccch-hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 622 VMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 622 ViDEah-~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
||||+| ++++..+...+...+....++.|+|+||||++. ..+.. ++.++..+.+.+... .+.+.+......+.
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~~---pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRTY---PVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCCC---CEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCccc---ceEEEEecCCchhH
Confidence 999999 477755444444444455678999999999964 34444 444444455554432 34444433334444
Q ss_pred HHHHHHHHHhh---hcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCeeeecCCCCHHHHHHHHHHhh-----
Q 001261 701 FLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLK-----------HGYPCLSLHGAKDQTDRESTISDFK----- 761 (1112)
Q Consensus 701 ~~~ll~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~-----------~g~~~~~ihg~~~~~~R~~~~~~F~----- 761 (1112)
...++..+... ...+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 44444433332 2478999999999999999999975 4788999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 762 SNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
+|.++|||||+++++|||||+|.+||++++ |.+...|+||+|||||. ..|.||+|+++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999888 89999999999999999 7999999997643
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-37 Score=415.30 Aligned_cols=341 Identities=17% Similarity=0.209 Sum_probs=258.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
|.....+.|...+|..++|+|.++++.++. +.++|++||||||||++|.+||++++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 445667777778899999999999999985 56799999999999999999999998763 35689999999999
Q ss_pred HHHHHHHHHH-HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 553 VQQIHSDIRK-FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~-~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..|.. |...+|+++..++|+...... ...+++|+||||++|..++... .....+.++++|||||+|.|.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-ccccccceeeEEEeechhhcCC
Confidence 9999999976 556689999999987654322 2245899999999986666443 2334578999999999998876
Q ss_pred cCChhHHHHHHH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch---hH
Q 001261 632 MGFEPQITRIVQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD---RF 701 (1112)
Q Consensus 632 ~gf~~~i~~il~-------~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~---k~ 701 (1112)
. .+..+..++. .+++..|+|+||||+++ ...++.++...+..+..-.....+..+...+....... ++
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 3 5555554443 44678999999999986 45566665544322222222222223333333222221 11
Q ss_pred ----HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----------------------------------CCCeee
Q 001261 702 ----LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----------------------------------GYPCLS 743 (1112)
Q Consensus 702 ----~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----------------------------------g~~~~~ 743 (1112)
..+...+......+++||||+++..|+.++..|... ...+++
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 223445555556789999999999999888776431 245889
Q ss_pred ecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC------CCCCHhHHHHHhcccCCCCC--c
Q 001261 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD------APNHYEDYVHRVGRTGRAGR--K 811 (1112)
Q Consensus 744 ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d------~p~s~~~y~QriGR~gR~G~--~ 811 (1112)
+||+|++.+|..+...|++|.++|||||+++++|||+|...+||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999983 32 36789999999999999986 6
Q ss_pred cEEEEEecCCccCch
Q 001261 812 GCAITFISEEDAKYS 826 (1112)
Q Consensus 812 g~~i~~~~~~d~~~~ 826 (1112)
|.||+|+.+.+..++
T Consensus 1299 G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEEEEGGGHHHH
T ss_pred eEEEEEecchHHHHH
Confidence 999999887655443
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.4e-38 Score=386.10 Aligned_cols=311 Identities=16% Similarity=0.123 Sum_probs=238.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++|+.++.++++|++++||||||++|+++++..+... ++++||||||++|+.||+..+..++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999999999999999998877541 3489999999999999999999986666
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
++.+..++|+.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6788889998776554 456789999999976432 124577899999999999864 567888888888
Q ss_pred CCcEEEEeccccHHHHH-HHHHhcCCCeEEEEcCcc------cccCCccEEEEec---------------------ccch
Q 001261 648 DRQTVLFSATFPRQVEI-LARKVLNKPVEIQVGGRS------VVNKDITQLVEVR---------------------PESD 699 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~-l~~~~~~~p~~i~i~~~~------~~~~~i~q~~~~~---------------------~~~~ 699 (1112)
..++|+||||+++.... +....+..+..+.+.... .....+....... ....
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 89999999999766422 112222233322221110 0000111111100 1112
Q ss_pred hHHHHHHHHHhhhc-CC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Ccccc
Q 001261 700 RFLRLLELLGEWYE-KG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAAR 776 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~-~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~~ 776 (1112)
+...+..++..... .+ .+||||+ ...++.|+..|...+..+..+||+|+..+|..++..|.+|..+||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 33334555554432 23 5566665 999999999999988899999999999999999999999999999999 99999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
|||+|++++||++++|+++..|+|++||+||.|+.|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998775555554
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.9e-37 Score=411.35 Aligned_cols=338 Identities=24% Similarity=0.313 Sum_probs=255.7
Q ss_pred CCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC---CCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 486 NYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---AAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~---~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
||..|+++|.+++|.++ +++++|++||||||||++|.+||+..+...... ....+.++|||+|+++||.|++..|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 578999999999999999999999998764321 12347789999999999999999999
Q ss_pred HHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 562 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
+.+..+|++|..++|+...... ...+++|+||||+++..++ ........+..+++|||||+|.+.+ ..+..+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~ll-r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIIT-RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHT-TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHH-cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9999999999999998765332 1245899999999985444 3333334578999999999997765 566666555
Q ss_pred HH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEecccch---hHH----HHHH
Q 001261 642 VQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPESD---RFL----RLLE 706 (1112)
Q Consensus 642 l~-------~~~~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~~~---k~~----~ll~ 706 (1112)
+. .+++..|+|+||||+|+ +..++.++...+ ..+.+-.....+..+.+.+....... .+. .+..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 43 45678999999999986 455666554432 11111122222233444433222221 111 2233
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCCC
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAKD 749 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ihg~~~ 749 (1112)
.+......+++||||+++..|+.++..|... ...++++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 3444445679999999999999888887542 235789999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCC--ccEEEEE
Q 001261 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGR--KGCAITF 817 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~--~g~~i~~ 817 (1112)
+.+|..+...|++|.++|||||++++.|||+|.+.+||. |++ |.++.+|+||+|||||.|. .|.+|++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999995 544 5689999999999999874 6999999
Q ss_pred ecCCccCchHHH
Q 001261 818 ISEEDAKYSPDL 829 (1112)
Q Consensus 818 ~~~~d~~~~~~i 829 (1112)
.+..+......+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 888776655444
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=6.9e-39 Score=379.44 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=204.4
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
+++.|+++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+..+ ++ ....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----DV--KFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----CE--EEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----Ce--EEecccc-
Confidence 35789999999999999999999999988765 3678999999999999999887643 22 2211111
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhc-----CCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEE
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTS-----GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVL 653 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-----~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il 653 (1112)
-+|+||+++++++... ......+.++++|||||||+| +.+|...+..+...+ +...|+|+
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366776654332211 011234788999999999998 333333333333333 36799999
Q ss_pred EeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHH
Q 001261 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 654 ~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
||||+++.+..++.. ..++.... ...+. .....++..|.. ..+++||||+++..|+.++..
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~-~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPS-EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCS-SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEee--------------eccCh-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 999998764322211 11211110 00111 111112233333 267999999999999999999
Q ss_pred HHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE-------------------eCCCCC
Q 001261 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------------------FDAPNH 794 (1112)
Q Consensus 734 L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------------------~d~p~s 794 (1112)
|...++.+..+|| .+|..++..|++|.++|||||+++++||||| +++||+ |++|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999996 899999
Q ss_pred HhHHHHHhcccCCC-CCccEEEEEe---cCCccCchHHHHHHHhhccCCCCh
Q 001261 795 YEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G~~g~~i~~~---~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
..+|+||+||+||. |..|.||+|+ ++.+...+..+...+......+|.
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 99999999999997 6899999997 677888888887777666665554
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.7e-37 Score=375.91 Aligned_cols=289 Identities=21% Similarity=0.228 Sum_probs=221.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+.++|..+++.+..++++|++|+||||||++|++|++. .+.++|||+|||+||.|++..+.. .++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~---~~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSK---AHG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHH---HHS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHH---HhC
Confidence 344566666666678899999999999999999999885 256899999999999999886654 456
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
..+...+|+.. +..+++|+|+||++|+ .. ....+.++++||||||| +++++|...+..|+..++..
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 67777788764 4567899999999983 22 23567889999999995 56788888899999999877
Q ss_pred Cc--EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH
Q 001261 649 RQ--TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726 (1112)
Q Consensus 649 ~q--~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~ 726 (1112)
+| +++||||++..+. ...|....+... .... +........ ......+++||||+++..
T Consensus 349 ~~~llil~SAT~~~~i~------~~~p~i~~v~~~---~~~~---i~~~~~~~~--------l~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 349 GARLVVLATATPPGSVT------VPHPNIEEVALS---NTGE---IPFYGKAIP--------IEAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp TCSEEEEEESSCTTCCC------CCCTTEEEEECB---SCSS---EEETTEEEC--------GGGSSSSEEEEECSCHHH
T ss_pred CCceEEEECCCCCcccc------cCCcceEEEeec---ccch---hHHHHhhhh--------hhhccCCcEEEEeCCHHH
Confidence 77 7788999987321 112211111000 0000 111100000 112256899999999999
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE----------EeC------
Q 001261 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFD------ 790 (1112)
Q Consensus 727 ~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----------~~d------ 790 (1112)
++.++..|...++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~g 480 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFT 480 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCE
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccc
Confidence 99999999999999999999999864 5667779999999999999997 99998 677
Q ss_pred -----CCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc--h--HHHHHHHhh
Q 001261 791 -----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY--S--PDLVKALEL 835 (1112)
Q Consensus 791 -----~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~--~--~~i~~~l~~ 835 (1112)
+|.+.++|+||+||+|| |..|. |+|+++.+... + ..|.+.+..
T Consensus 481 l~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 481 IETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 89999 99999887765 4 666666543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.2e-37 Score=383.43 Aligned_cols=307 Identities=18% Similarity=0.222 Sum_probs=218.3
Q ss_pred HHHCCCC-----CChHHHH-----HHHHHHH------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 482 IRKLNYE-----KPMPIQA-----QALPVIM------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 482 l~~~~~~-----~pt~iQ~-----~ai~~il------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
|..+||. .|||+|. ++||.++ .|+++|++++||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3445666 8999999 9999988 89999999999999999999999988765 3678999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||++||.|++..+..+ ++. ...+.... ....+.-+.+++.+.+...+... ..+.++++|||||
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDE 340 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDE 340 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEES
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeC
Confidence 999999999999887653 332 11110000 00112234445555554433321 3678999999999
Q ss_pred chhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
||+| +..+...+..+...+ +...|+|+||||+++.+..+... ..|+. .+.. ..+ ...+..+
T Consensus 341 aH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~-------------~~~-~~~~~~~ 402 (673)
T 2wv9_A 341 AHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS-------------EIP-DRAWSSG 402 (673)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC-------------CCC-SSCCSSC
T ss_pred Cccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEee-------------ecC-HHHHHHH
Confidence 9997 222222333333333 36789999999998664322110 12221 1100 001 1111122
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+..|.. ..+++||||+++..++.++..|...++.+..+||. +|..++..|++|.++|||||+++++||||| ++
T Consensus 403 l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 403 FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 333333 46799999999999999999999999999999994 789999999999999999999999999999 99
Q ss_pred EEEE--------------------eCCCCCHhHHHHHhcccCCC-CCccEEEEEe---cCCccCchHHHHHHHhh
Q 001261 785 LVIN--------------------FDAPNHYEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 785 ~VI~--------------------~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~---~~~d~~~~~~i~~~l~~ 835 (1112)
+||| |++|.+.++|+||+||+||. |+.|.||+|+ ++.+..++..+...+..
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 9998 67899999999999999999 7899999996 46676676666555433
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-36 Score=365.16 Aligned_cols=292 Identities=22% Similarity=0.235 Sum_probs=222.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.++++|++++||+|||++|+++++.. +..+||||||++|+.||+..+..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 37999999999999999999999999999999999998864 457999999999999999988883
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
++. +..++|+... .++|+|+||+.|...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~- 216 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS- 216 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-
Confidence 777 7777777642 479999999998766532 12458999999999998876643 44444
Q ss_pred CCCcEEEEeccccHH-------------------HHHHHHHhcCCCeE--EEEcCccc----------------------
Q 001261 647 PDRQTVLFSATFPRQ-------------------VEILARKVLNKPVE--IQVGGRSV---------------------- 683 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~-------------------~~~l~~~~~~~p~~--i~i~~~~~---------------------- 683 (1112)
+..++|+||||++.. ...+...++..+.. +.+.....
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 467899999998731 22222222222211 11110000
Q ss_pred --ccCCccEEE---------------------EecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 684 --VNKDITQLV---------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 684 --~~~~i~q~~---------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
....+.+.+ .......|...|..+|.. ...+++||||++...++.++..| .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l-----~ 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF-----L 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT-----T
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh-----C
Confidence 000000000 011234566667777766 45679999999999999999987 3
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc-c--EEEEE
Q 001261 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-G--CAITF 817 (1112)
Q Consensus 741 ~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g--~~i~~ 817 (1112)
+..+||+++..+|..++..|++|.++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+. + .+|.|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999854 3 44556
Q ss_pred ecC
Q 001261 818 ISE 820 (1112)
Q Consensus 818 ~~~ 820 (1112)
++.
T Consensus 451 v~~ 453 (472)
T 2fwr_A 451 ISR 453 (472)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.3e-37 Score=366.30 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=205.5
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCC
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg 577 (1112)
..++..++++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999988764 36789999999999999998876 3333322221
Q ss_pred CChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh-----hhccCChhHHHHHHHhcCCCCcEE
Q 001261 578 SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-----MFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 578 ~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-----~~~~gf~~~i~~il~~~~~~~q~i 652 (1112)
.... -..+..|.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. ..++.|+|
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 1110 1234568889999887666542 4688999999999998 55554433322 23688999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
+||||+|..+..+.. ...|+..... ... ...+..++.+|.. ..+++||||+++..|+.++.
T Consensus 148 l~SAT~~~~~~~~~~--~~~pi~~~~~--~~~-------------~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 148 FMTATPPGTTDPFPD--SNAPIHDLQD--EIP-------------DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp EECSSCTTCCCSSCC--CSSCEEEEEC--CCC-------------SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EEEcCCCcchhhhcc--CCCCeEEecc--cCC-------------cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHH
Confidence 999999876432221 1334332111 000 0111112233333 26799999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE--------------------eCCC
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN--------------------FDAP 792 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------------------~d~p 792 (1112)
.|...++.+..+||. +|..++..|++|..+|||||+++++|||||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHhHHHHHhcccCCCCC-ccEEEEEecCC--ccCchHHH
Q 001261 793 NHYEDYVHRVGRTGRAGR-KGCAITFISEE--DAKYSPDL 829 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G~-~g~~i~~~~~~--d~~~~~~i 829 (1112)
.+..+|+||+||+||.|. .|.||+|+++. +...+..+
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 999999999999999997 99999999876 54444444
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1e-34 Score=318.74 Aligned_cols=236 Identities=39% Similarity=0.643 Sum_probs=201.0
Q ss_pred cCceeccCCCCC--cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 453 LELKIHGKDVPK--PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 453 ~~~~~~~~~~p~--pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+.+.+.|...|. ++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346678888887 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCC----CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH
Q 001261 531 DQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 531 ~~~~~----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~ 606 (1112)
..... ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12346799999999999999999999999888999999999999988888888899999999999999887
Q ss_pred hcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc
Q 001261 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682 (1112)
Q Consensus 607 ~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~ 682 (1112)
... ..+..+++|||||||+|++++|...+..++..+ +. ..|+|+||||+|+.+..++..++.+|+.+.++...
T Consensus 167 ~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 167 KNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp TTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred cCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 643 467889999999999999999999999999854 33 68999999999999999999999999999888766
Q ss_pred cccCCccEE
Q 001261 683 VVNKDITQL 691 (1112)
Q Consensus 683 ~~~~~i~q~ 691 (1112)
....+|.|.
T Consensus 244 ~~~~~i~q~ 252 (253)
T 1wrb_A 244 STSDSIKQE 252 (253)
T ss_dssp ---------
T ss_pred CCcCCceec
Confidence 666666654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.7e-35 Score=343.18 Aligned_cols=269 Identities=20% Similarity=0.207 Sum_probs=194.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|+++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999976654 36789999999999999987765 4455544443211
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~ 661 (1112)
.-..+..+.++|.+.+...+... ..+.++++|||||||++ +.++......+.... ++..|+|+||||+++.
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 11234667888999887666542 35788999999999996 333444444444332 5689999999999874
Q ss_pred HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 662 ~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
+..+... ..|+. .+. .......+..++..|.. ..+++||||+++..++.++..|...++.+
T Consensus 138 ~~~~~~~--~~~i~-~~~--------------~~~~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEAFPPS--NSPII-DEE--------------TRIPDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCSSCCC--SSCCE-EEE--------------CCCCSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhhhcCC--CCcee-ecc--------------ccCCHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 3211100 11111 110 00011112223344444 26799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE-----------------EEEeCCCCCHhHHHHHhcc
Q 001261 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL-----------------VINFDAPNHYEDYVHRVGR 804 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~-----------------VI~~d~p~s~~~y~QriGR 804 (1112)
..+||+ +|..++..|++|.++|||||+++++||||| +.+ ||+++.|.+..+|+||+||
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR 273 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGR 273 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTT
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhc
Confidence 999997 578899999999999999999999999999 544 6788999999999999999
Q ss_pred cCCCCC-ccEEEEEe
Q 001261 805 TGRAGR-KGCAITFI 818 (1112)
Q Consensus 805 ~gR~G~-~g~~i~~~ 818 (1112)
+||.|. .|.+++|.
T Consensus 274 ~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 274 IGRNPEKLGDIYAYS 288 (431)
T ss_dssp SSCCTTCCCCEEEEC
T ss_pred cCCCCCCCCeEEEEc
Confidence 999985 45555555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=309.83 Aligned_cols=216 Identities=40% Similarity=0.729 Sum_probs=187.5
Q ss_pred cCCCCCccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-C
Q 001261 459 GKDVPKPIKTWHQ-TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-A 536 (1112)
Q Consensus 459 ~~~~p~pi~~~~~-~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~ 536 (1112)
+...|.|+.+|.+ +++++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++..+... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567999999999 8999999999999999999999999999999999999999999999999999999988653211 1
Q ss_pred CCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccC
Q 001261 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 537 ~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
...++++|||+||++|+.|++..+..+. ..++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~ 166 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---CCCT
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cCcc
Confidence 2357899999999999999999999986 45889999999998888888888899999999999999886543 4678
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
++++|||||||+|++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999987753
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.7e-34 Score=351.23 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=207.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE
Q 001261 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
|.......+.|+++|++||||||||+.++. .+.. .+.+||++||++||.|++..+..+ |+.+..
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~al~----~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYHAIQ----KYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHHHHH----HHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHHHHH----HHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 333344567899999999999999984333 3332 134599999999999999998774 788888
Q ss_pred EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC-CCCcEE
Q 001261 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTV 652 (1112)
Q Consensus 574 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~-~~~q~i 652 (1112)
++|+..... ..-....+++++|++.+ ..+..+++|||||||+|++.+|...+..++..++ ...+++
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred EECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEE
Confidence 888864410 00001246777776533 2346789999999999999999999999998887 778999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
++|||.+ .+..++... ..++.+....... ........ +..+... ....||||+++..++.++.
T Consensus 276 ~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~------~l~~~~~~-------l~~l~~~--~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 276 GEPAAID-LVMELMYTT-GEEVEVRDYKRLT------PISVLDHA-------LESLDNL--RPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ECGGGHH-HHHHHHHHH-TCCEEEEECCCSS------CEEECSSC-------CCSGGGC--CTTEEEECSSHHHHHHHHH
T ss_pred eccchHH-HHHHHHHhc-CCceEEEEeeecc------hHHHHHHH-------HHHHHhc--CCCCEEEEcCHHHHHHHHH
Confidence 9999963 344444333 4444432211110 00000000 0111111 2345889999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCC--------------CCCHh
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDA--------------PNHYE 796 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~--------------p~s~~ 796 (1112)
.|...++.+..+||+|++.+|..++..|++ |.++|||||+++++|||| ++++||++++ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 889999999999999999 9999999999 78999
Q ss_pred HHHHHhcccCCCCCc---cEEEEEec
Q 001261 797 DYVHRVGRTGRAGRK---GCAITFIS 819 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~---g~~i~~~~ 819 (1112)
+|+||+|||||.|.. |.|++++.
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 999999999999964 77766544
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=306.06 Aligned_cols=210 Identities=40% Similarity=0.651 Sum_probs=193.6
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.++.+|.+++|++.+++.|..+||..|+++|.++|+.++.|+++|++++||||||++|++|++..+... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 4567899999999999999999999999999999999999999999999999999999999999988764 23678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++..+++.+.+++||.....+...+..+++|+|+||++|.+++.... ...+..+++||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lV 191 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLV 191 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEE
Confidence 9999999999999999999999989999999999999888888888899999999999999887532 24578899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|||||+|++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999987653
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=318.04 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=187.0
Q ss_pred eeccCCCCC---cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 456 KIHGKDVPK---PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 456 ~~~~~~~p~---pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+.+.+.+. ++.+|.+++|++.+++.|..+||..|||+|.++||.++.| +|+|++++||||||++|++|++.++.
T Consensus 78 ~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp EEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 344444433 4678999999999999999999999999999999999998 99999999999999999999999875
Q ss_pred cCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC
Q 001261 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (1112)
Q Consensus 531 ~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~ 609 (1112)
.. ..++++|||+||++||.|++..+..++..+ ++.+.+++||....... ..+++||||||++|++++...
T Consensus 158 ~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~- 228 (300)
T 3fmo_B 158 PA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL- 228 (300)
T ss_dssp TT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT-
T ss_pred cc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc-
Confidence 42 357899999999999999999999998765 68888888887653322 456899999999999998643
Q ss_pred CcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 610 ~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
....+.++.+|||||||+|++ ++|...+..|+..+++.+|+|+||||+|..+..++..++.+|+.|.+.
T Consensus 229 -~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 -KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp -CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred -CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 235688999999999999998 789999999999999999999999999999999999999999988764
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=308.50 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=200.1
Q ss_pred HHHHHHhhcCceeccCCCCCcccccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 445 EVSAYRKQLELKIHGKDVPKPIKTWHQT----GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~p~pi~~~~~~----~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
++..+++...+.+.|..+|.|+.+|.++ +|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH-HHHhcCCeEEEeCch
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI-SELKRGTEIVVCTPG 599 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~~~~IvV~Tp~ 599 (1112)
|++|++.++... ...++++|||+||++|+.|++..+..++...++.+.+++|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 235789999999999999999999999998898888877765333221 122346899999999
Q ss_pred HHHHHHHhcCCcccccCCceEEEeccchhhhc---cCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001261 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFD---MGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~---~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~ 675 (1112)
+|.+++.... ....+.++.+|||||||+|++ .+|...+..++..+ .+..|+++||||+|+.+..++..++.+|+.
T Consensus 159 ~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 159 RLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999887643 235688999999999999998 57888898888776 457899999999999999999999999999
Q ss_pred EEEcCc
Q 001261 676 IQVGGR 681 (1112)
Q Consensus 676 i~i~~~ 681 (1112)
+.++..
T Consensus 238 i~~~~~ 243 (245)
T 3dkp_A 238 VSIGAR 243 (245)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 988754
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.6e-34 Score=350.94 Aligned_cols=308 Identities=16% Similarity=0.145 Sum_probs=191.9
Q ss_pred CCChHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCCCCCCcEEEEccchhHHHHHH-HHH
Q 001261 488 EKPMPIQAQALPVIMS----G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPP-VAAGDGPVGLIMAPTRELVQQIH-SDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~-~~~~~~~~~LIl~PtreLa~Q~~-~~~ 560 (1112)
..|+|+|.++|+.++. + +++|++++||||||++++..+...+..... .....++++||||||++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3699999999999886 4 568999999999999976655554443211 01124789999999999999998 666
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CcccccCCceEEEeccchhhhccCChhHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
..| +..+..+.++. +..+.+|+|+||++|...+.... .....+..+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 33444444332 33568999999999987653211 112345678999999999987643 24556
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc-----ccCCccE------------------------
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-----VNKDITQ------------------------ 690 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~-----~~~~i~q------------------------ 690 (1112)
.++..++ ..++|+||||+..........+++.++....-.... ....+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6777765 467999999987543333333444443221000000 0000000
Q ss_pred --EEEeccc-------chhHHHHHH----HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------CeeeecCCCC
Q 001261 691 --LVEVRPE-------SDRFLRLLE----LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY--------PCLSLHGAKD 749 (1112)
Q Consensus 691 --~~~~~~~-------~~k~~~ll~----~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~--------~~~~ihg~~~ 749 (1112)
....... ..+...++. .+......+++||||+++..|+.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000000 011222222 233333457999999999999999999987543 3778999986
Q ss_pred HHHHHHHHHHhhcCCcc---EEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 750 QTDRESTISDFKSNVCN---LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~---VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
. +|..++..|++|... |||||+++++|||+|++++||+|++|+++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 89999999999999999999999999999999999999999874
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.1e-33 Score=305.14 Aligned_cols=213 Identities=32% Similarity=0.539 Sum_probs=179.4
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
..+.|.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567889999999999999999999999999999999999999999999999999999999999999886542 2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
.++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+ ++|+|+||++|.+++.... ..+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCccc
Confidence 4678999999999999999999999988899999999999888777777666 8999999999999886532 46788
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
+.+|||||||+|++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.|.++
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999887654
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=300.44 Aligned_cols=229 Identities=33% Similarity=0.502 Sum_probs=198.4
Q ss_pred HHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 443 ~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
.+++..++..+.. ..+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4556666666542 12567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH
Q 001261 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI 602 (1112)
Q Consensus 523 lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~ 602 (1112)
+|++..+..... ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998865321 1234788999999999999999999999988889999999999887776655 46999999999999
Q ss_pred HHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 603 ~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
.++.... ...+.++++|||||||+|++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.++.
T Consensus 159 ~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 159 QHMDETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHhcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8886542 245788999999999999999999999999999999999999999999999999999999999887653
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8e-33 Score=299.18 Aligned_cols=211 Identities=30% Similarity=0.471 Sum_probs=184.1
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
+...|.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567888999999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
.++++|||+||++|+.|++..+..++... ++.+.+++||.....+...+. +++|+|+||++|.+++.... ..+.+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~---~~~~~ 166 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDY---LNPGS 166 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTS---SCGGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCC---ccccc
Confidence 46899999999999999999999998765 889999999998877766554 69999999999999886532 46788
Q ss_pred ceEEEeccchhhhccC-ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 618 VTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 618 i~~vViDEah~~~~~g-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
+.+|||||||+++++| |...+..++..++...|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999998 999999999999989999999999999999999999999987654
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.4e-33 Score=358.55 Aligned_cols=357 Identities=15% Similarity=0.149 Sum_probs=243.0
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|+|+|.+++..++.. ..+|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47899999999998864 478999999999999998887776554 234479999999 99999999997754
Q ss_pred hcCceEEEEeCCCChHHHHHH---HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChh-HHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISE---LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~---l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~-~i~~i 641 (1112)
++.+..+.|+. ....... .....+|||+|++.|...... ........+++|||||||++.+.+... ....+
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 56655544322 2221111 112468999999987432100 011234578999999999997654321 12223
Q ss_pred HHhc-CCCCcEEEEeccccH----HHHHHHHHhcCC--------------------------------------------
Q 001261 642 VQNI-RPDRQTVLFSATFPR----QVEILARKVLNK-------------------------------------------- 672 (1112)
Q Consensus 642 l~~~-~~~~q~il~SAT~~~----~~~~l~~~~~~~-------------------------------------------- 672 (1112)
+..+ ....+++++|||+.. .+..+...+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 345679999999742 011111100000
Q ss_pred ------------------------------------CeEEEEcC---cccccCCccEEE---------------------
Q 001261 673 ------------------------------------PVEIQVGG---RSVVNKDITQLV--------------------- 692 (1112)
Q Consensus 673 ------------------------------------p~~i~i~~---~~~~~~~i~q~~--------------------- 692 (1112)
.+.+.... ..++...+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 00000000 000000000000
Q ss_pred ------------------------EecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCC
Q 001261 693 ------------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGA 747 (1112)
Q Consensus 693 ------------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~ 747 (1112)
.......|...|..+|.. ...+++||||+++..++.++..|.. .|+.+..+||+
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 112334577778888776 4577999999999999999999995 69999999999
Q ss_pred CCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 748 KDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
|++.+|..++..|++|. ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.|.|++++.......
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999997777665555555
Q ss_pred hHHHHHHHhh----ccCCCChhHHHHHHHHHHHHhhhh
Q 001261 826 SPDLVKALEL----SEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 826 ~~~i~~~l~~----~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
...|.+.+.. ....+|. ...+.+.+...+....
T Consensus 618 ee~i~~~~~~k~~~~~~~~~~-~~~i~~~~~~~l~~~l 654 (968)
T 3dmq_A 618 QSVLVRWYHEGLDAFEHTCPT-GRTIYDSVYNDLINYL 654 (968)
T ss_dssp HHHHHHHHHHTTCCSSSCCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceecCCCC-HHHHHHHHHHHHHHHH
Confidence 5566665532 2233443 3455555555554444
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.5e-33 Score=298.05 Aligned_cols=207 Identities=31% Similarity=0.518 Sum_probs=185.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999887542 3467899
Q ss_pred EEccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
||+||++|+.|++..+..++... ++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+..+++
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~ 153 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHI 153 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC---CCcCcceE
Confidence 99999999999999999998776 788999999987766655556678999999999999886532 46788999
Q ss_pred EEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|||||||++++++|...+..++..+++..|+|+||||+|..+..++..++.+|..+.+.
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999887654
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-32 Score=295.77 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=183.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
...|+++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467889999999999999999999999999999999999999999999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
++++|||+||++|+.|++..+..++...++.+..++||.....+...+.. ++|+|+||++|..++... ...+.+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR---RFRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC---CcchhhCc
Confidence 67999999999999999999999998889999999999887777665554 899999999999888764 24678899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~ 681 (1112)
+|||||||++++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.+...
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988776543
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-32 Score=288.94 Aligned_cols=202 Identities=31% Similarity=0.593 Sum_probs=185.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+... ..++++|||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886542 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+||++|+.|++..+..++..+ ++.+.+++||.....+...+..+++|+|+||++|..++.... ..+.++.+|||||
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~lViDE 154 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLDE 154 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC---cCcccCCEEEEEC
Confidence 999999999999999998877 789999999999988888888889999999999998886532 4678899999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i 676 (1112)
||++++.+|...+..++..+++..|+|+||||+|..+..++..++.+|+.+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999899999999999999999999999999765
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.2e-31 Score=318.01 Aligned_cols=321 Identities=21% Similarity=0.220 Sum_probs=238.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+.-++..|+ |....||+|||+++.+|++...+. |..|.||+||..||.|-+.++..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 564 68999999999998887 889999999999999999865443 6679999999999999999999999
Q ss_pred hhcCceEEEEeCC--------------------------------------------------CChHHHHHHHhcCCeEE
Q 001261 565 KVMGVRCVPVYGG--------------------------------------------------SGVAQQISELKRGTEIV 594 (1112)
Q Consensus 565 ~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~Iv 594 (1112)
..+|+.+.+++.. .+..+..... .|+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 9999999999882 1111111222 38999
Q ss_pred EeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-cc--------C-------ChhH-----------------
Q 001261 595 VCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DM--------G-------FEPQ----------------- 637 (1112)
Q Consensus 595 V~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~--------g-------f~~~----------------- 637 (1112)
++|..-|. |+|..+- ....-...+.|.||||+|.++ |. | +...
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998873 4554321 111124678899999999753 10 0 0000
Q ss_pred ---------------HHHH---------------------HHh---cCCC------------------------------
Q 001261 638 ---------------ITRI---------------------VQN---IRPD------------------------------ 648 (1112)
Q Consensus 638 ---------------i~~i---------------------l~~---~~~~------------------------------ 648 (1112)
+..+ +.. +..+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 0000 000 0000
Q ss_pred -------------------------------CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccE-EEEecc
Q 001261 649 -------------------------------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP 696 (1112)
Q Consensus 649 -------------------------------~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q-~~~~~~ 696 (1112)
..+.+||+|.......|...+ +-.+. .++. ..+...+.+ .+.+..
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~vv-~IPt-nkp~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GMEVV-VIPT-HKPMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCCEE-ECCC-SSCCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCeEE-EECC-CCCcceeecCcEEEec
Confidence 248999999988777665554 33332 3322 112222222 234566
Q ss_pred cchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 697 ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...|+..++..|.... .+.++||||+|+..++.|+..|...|+++.++||++.+.++..+...|+.| .|||||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 6789999999888754 456999999999999999999999999999999996655555555566555 6999999999
Q ss_pred ccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 776 RGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 776 ~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+||+ +..+||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 677999999999999999999999999999999999998874
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.3e-31 Score=284.50 Aligned_cols=204 Identities=41% Similarity=0.694 Sum_probs=185.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+.... ..+.++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999876432 123578999999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++|+.|++..+..++.. +.+.+++||.....+...+..+++|+|+||++|..++.... ..+..+++|||||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV---LDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS---SCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC---cchhhceEEEEEChh
Confidence 9999999999999998764 67888999998888888888889999999999999887632 467889999999999
Q ss_pred hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
++++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999987765
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-32 Score=298.02 Aligned_cols=205 Identities=33% Similarity=0.521 Sum_probs=183.0
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|..++ |++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566666 9999999999999999999999999999999999999999999999999999998876432 123478899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++||.|++..+..++...++.+.+++||.....+...+..+++||||||++|.+++.... ...+.++.+||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lViD 208 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVID 208 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEEc
Confidence 99999999999999999999999999999999999998888888889999999999999887643 2457889999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~ 674 (1112)
|||+|++++|...+..|+..++..+|+|+||||+|+.+..++..++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999987653
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.1e-31 Score=322.22 Aligned_cols=310 Identities=18% Similarity=0.209 Sum_probs=217.3
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.++++++. .+.++|++++||+|||++++..+...... +....+|||||+ .|+.||..++.+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 368999999999874 57899999999999999976655544322 234579999995 6889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+. ++.+..++|+... ......+|+|+||+.|..... .....+++|||||||++.+.+ ..+...+.
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 75 3455555555422 112357999999999865432 233468999999999997654 34555566
Q ss_pred hcCCCCcEEEEeccccHH----HHHHHHHhc--------------------------------CCCeEEEEcCcc-----
Q 001261 644 NIRPDRQTVLFSATFPRQ----VEILARKVL--------------------------------NKPVEIQVGGRS----- 682 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~----~~~l~~~~~--------------------------------~~p~~i~i~~~~----- 682 (1112)
.++ ..+.+++|||+..+ +..++..+. -.|+.+......
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 663 45789999998431 111111110 012211110000
Q ss_pred cccCCccEEEEe--------------------------------------------------------cccchhHHHHHH
Q 001261 683 VVNKDITQLVEV--------------------------------------------------------RPESDRFLRLLE 706 (1112)
Q Consensus 683 ~~~~~i~q~~~~--------------------------------------------------------~~~~~k~~~ll~ 706 (1112)
..+......+.+ .....|+..+..
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 001111111111 012345556666
Q ss_pred HHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEecCcccccCCCCC
Q 001261 707 LLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIATSVAARGLDVKE 782 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVaT~v~~~GlDi~~ 782 (1112)
+|.... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ... |||+|+++++|||++.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 666654 3569999999999999999999885 99999999999999999999999988 454 8999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecC
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISE 820 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~ 820 (1112)
+++||+|++|+++..|+|++||++|.|+.+.+ |.|++.
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 99999999999999999999999999987665 445554
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=1.5e-31 Score=287.09 Aligned_cols=207 Identities=28% Similarity=0.509 Sum_probs=182.8
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+....+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 4455679999999999999999999999999999999999999999999999999999999999886542 23568
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+|||+||++|+.|++..+..++..+ ++.+.+++||.....+...+.. .++|+|+||++|..++.... ..+..+++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcccCCE
Confidence 9999999999999999999998776 7899999999988887777665 46999999999999886532 46788999
Q ss_pred EEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001261 621 LVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 621 vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~ 677 (1112)
|||||||++++ .+|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999987 5788899999999988999999999999999999999999998765
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=6.2e-30 Score=326.21 Aligned_cols=336 Identities=15% Similarity=0.161 Sum_probs=228.5
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHHc--------------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 476 SKIMETIRKLN-------YEKPMPIQAQALPVIMS--------------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 476 ~~l~~~l~~~~-------~~~pt~iQ~~ai~~il~--------------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
..++..|..+- ...|+|+|..|++.++. ++++|++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555432 23599999999999875 378999999999999997 5666554431
Q ss_pred CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCccc
Q 001261 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 535 ~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~ 613 (1112)
+..+++|||||+++|+.||...+..|+.. .+.++.+.......+. .+.+|+|+||++|..++.... ...
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~ 397 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLP 397 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chh
Confidence 23468999999999999999999887642 2456666666666664 468999999999998876532 122
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHH----HHHHHhcCC-----------------
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE----ILARKVLNK----------------- 672 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~----~l~~~~~~~----------------- 672 (1112)
.+..+.+|||||||++... ..+..|+..++ ..++|+|||||..... .....+++.
T Consensus 398 ~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~ 473 (1038)
T 2w00_A 398 VYNQQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL 473 (1038)
T ss_dssp GGGSCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC
T ss_pred ccccccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC
Confidence 4567899999999997642 33555666664 5799999999874321 111222233
Q ss_pred CeEEEEcCcc-cc---c-C-C------ccEEEEecccchhHHHHHHHHHhhh-----------cCCeEEEEeCCHHHHHH
Q 001261 673 PVEIQVGGRS-VV---N-K-D------ITQLVEVRPESDRFLRLLELLGEWY-----------EKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 673 p~~i~i~~~~-~~---~-~-~------i~q~~~~~~~~~k~~~ll~~l~~~~-----------~~~~vLIF~~s~~~~~~ 729 (1112)
|+.+...... .. . . . +.+. .......++..++..|...+ ...++||||+++..|..
T Consensus 474 p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 474 KFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 3222111100 00 0 0 0 0000 00012223334444332211 23589999999999999
Q ss_pred HHHHHHhcC------------CCe-eeecCC----------C----------CH--------------------------
Q 001261 730 LFRDLLKHG------------YPC-LSLHGA----------K----------DQ-------------------------- 750 (1112)
Q Consensus 730 l~~~L~~~g------------~~~-~~ihg~----------~----------~~-------------------------- 750 (1112)
++..|...+ +.+ +++||+ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999998754 555 455542 2 22
Q ss_pred ---HHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc----cEEEEEecCCcc
Q 001261 751 ---TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 751 ---~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~----g~~i~~~~~~d~ 823 (1112)
..|..++..|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~---- 707 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD---- 707 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC----
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc----
Confidence 147889999999999999999999999999999 678899999999999999999998754 77777775
Q ss_pred CchHHHHHHHhh
Q 001261 824 KYSPDLVKALEL 835 (1112)
Q Consensus 824 ~~~~~i~~~l~~ 835 (1112)
....+..++..
T Consensus 708 -~~~~l~~Al~~ 718 (1038)
T 2w00_A 708 -LERSTIDAITL 718 (1038)
T ss_dssp -CHHHHHHHHHH
T ss_pred -cHHHHHHHHHH
Confidence 34445555543
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=320.01 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=226.7
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.+++.+++ .+.++|++.+||+|||++++..+...+... .....+||||| ..|+.||..+|.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 478999999999877 789999999999999998777665554332 12345799999 67889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHH------------hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISEL------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l------------~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+. ++.+++.+|+......+... ...++|+|+||+.|...... +....+.+|||||||++.+
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGGGGCC
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhhhhcC
Confidence 75 45666666665444443322 12468999999998664422 1223578999999999865
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEecccc----HHHHHHHHHhcCCC-----------------------------eEEEE
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFP----RQVEILARKVLNKP-----------------------------VEIQV 678 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~----~~~~~l~~~~~~~p-----------------------------~~i~i 678 (1112)
. ...+...+..++ ....+++|||+- ..+..++..+.... +.+..
T Consensus 382 ~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 382 A--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp S--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred c--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 3 345566666663 345788999972 22333333222211 11100
Q ss_pred cCccc---ccCCccEEEEe-------------------------------------------------------------
Q 001261 679 GGRSV---VNKDITQLVEV------------------------------------------------------------- 694 (1112)
Q Consensus 679 ~~~~~---~~~~i~q~~~~------------------------------------------------------------- 694 (1112)
....+ .+......+.+
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 00000 00000000000
Q ss_pred -------------cccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh
Q 001261 695 -------------RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760 (1112)
Q Consensus 695 -------------~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F 760 (1112)
.....|+..|..+|..+.. +.++||||.....++.|..+|...|+.+..|||+++..+|..++..|
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 0123456666677766544 45999999999999999999999999999999999999999999999
Q ss_pred hcCCc---cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecCC
Q 001261 761 KSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 761 ~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~~ 821 (1112)
+++.. .+||+|.+++.|||++.+++||+||+|||+..++|++||++|.|+...+ |.|++..
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 98654 5999999999999999999999999999999999999999999987554 4456543
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-28 Score=304.24 Aligned_cols=322 Identities=17% Similarity=0.215 Sum_probs=222.2
Q ss_pred CChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+|+|.+++.++. .+..+|+..+||+|||++++..+...+...+. .......+|||||+ .|+.||..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68899999999985 34678999999999999988777766554322 11223468999997 788999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHH--HHHHHhc------CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQ--QISELKR------GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~--~~~~l~~------~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+.+|+.. .+.++.++||..... .+..+.. .++|+|+||+.|..... ......+++|||||||++.+
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----HhhcCCccEEEEECceecCC
Confidence 9999865 566777777764321 2222221 36899999998865432 12335688999999999875
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEeccccHH----HH---------------HHHHHhc----------------------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFPRQ----VE---------------ILARKVL---------------------- 670 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~~~----~~---------------~l~~~~~---------------------- 670 (1112)
.. ......+..++ ....|++|||+-.+ +. .|...|.
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 43 34445555554 45689999996321 00 0100000
Q ss_pred -------CCCeEEEEcCcc---cccCCccEEEEe----------------------------------------------
Q 001261 671 -------NKPVEIQVGGRS---VVNKDITQLVEV---------------------------------------------- 694 (1112)
Q Consensus 671 -------~~p~~i~i~~~~---~~~~~i~q~~~~---------------------------------------------- 694 (1112)
-.|+.+.-.... ..+..+.+.+.+
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 000000000000 000000000000
Q ss_pred -------------------------------cccchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 695 -------------------------------RPESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 695 -------------------------------~~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
.....|+..|..++.... ...++||||++...++.|...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 011234444444444332 35799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCc---cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEE
Q 001261 742 LSLHGAKDQTDRESTISDFKSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~ 816 (1112)
..+||+++..+|..++..|++|.. .+||+|.++++|||++++++||+||+||++..|.|++||++|.|+... +|.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 999999999999999999999865 489999999999999999999999999999999999999999998764 444
Q ss_pred EecCC
Q 001261 817 FISEE 821 (1112)
Q Consensus 817 ~~~~~ 821 (1112)
|++..
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 56543
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=6.4e-27 Score=282.38 Aligned_cols=321 Identities=22% Similarity=0.273 Sum_probs=233.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .||++|..++|.++.|+ |+.+.||+|||++|++|++.+... |..|+||+||++||.|++.++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 898 99999999999999998 999999999999999999755442 5579999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccC---CceEEEeccchhhh-ccCCh-
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLR---RVTYLVMDEADRMF-DMGFE- 635 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~---~i~~vViDEah~~~-~~gf~- 635 (1112)
..+|+++.+++||.+... ..+..+++|+|+||++| .++|..+- .....++ .+.++||||||.|+ +.+..
T Consensus 145 ~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 999999999999988543 33445699999999999 88887652 1123567 89999999999886 32211
Q ss_pred --------------hHHHHHHHhcCCC-----------------------------------------------------
Q 001261 636 --------------PQITRIVQNIRPD----------------------------------------------------- 648 (1112)
Q Consensus 636 --------------~~i~~il~~~~~~----------------------------------------------------- 648 (1112)
..+..++..++.+
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 1112222221110
Q ss_pred ----------------------------------------------------------------------------CcEE
Q 001261 649 ----------------------------------------------------------------------------RQTV 652 (1112)
Q Consensus 649 ----------------------------------------------------------------------------~q~i 652 (1112)
..+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 1266
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF 731 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~ 731 (1112)
+||+|.......|... ++-.+.+.....+...... ...++.....|+..++..+...+. +.+|||+|.|++..+.|+
T Consensus 383 GMTGTA~tE~~Ef~~i-Y~l~Vv~IPTn~p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS 460 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEI-YGMDVVVVPTNRPVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLS 460 (997)
T ss_dssp EEESSCGGGHHHHHHH-HCCCEEECCCSSCCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred ecCCCchHHHHHHHHH-hCCCEEEcCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH
Confidence 7777776655555443 3333333222222222211 223345667889888888776654 559999999999999999
Q ss_pred HHHH----------------------------------------------------------------------------
Q 001261 732 RDLL---------------------------------------------------------------------------- 735 (1112)
Q Consensus 732 ~~L~---------------------------------------------------------------------------- 735 (1112)
..|.
T Consensus 461 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (997)
T 2ipc_A 461 QMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVL 540 (997)
T ss_dssp HHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHH
Confidence 9998
Q ss_pred hcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCc-------------------c-----------
Q 001261 736 KHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKEL-------------------E----------- 784 (1112)
Q Consensus 736 ~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v-------------------~----------- 784 (1112)
+.|++.-+++......+ ..|+. ..|. -.|-|||++|+||.||.=- .
T Consensus 541 ~~gI~H~VLNAK~he~E-AeIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (997)
T 2ipc_A 541 RQGIPHQVLNAKHHARE-AEIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617 (997)
T ss_dssp HHCCCCCEECSSSHHHH-HHHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHH
T ss_pred HcCCCeeeccccchHHH-HHHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccccc
Confidence 55777777776543222 23332 2343 4699999999999998532 1
Q ss_pred --------------------------------------------EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 785 --------------------------------------------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 785 --------------------------------------------~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+||--..+.|--.-.|-.||+||-|.+|.+..|++-
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSL 697 (997)
T 2ipc_A 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697 (997)
T ss_dssp HTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEES
T ss_pred ccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEEC
Confidence 677777788888888999999999999999988886
Q ss_pred Ccc
Q 001261 821 EDA 823 (1112)
Q Consensus 821 ~d~ 823 (1112)
+|.
T Consensus 698 eDd 700 (997)
T 2ipc_A 698 DDD 700 (997)
T ss_dssp SSH
T ss_pred ChH
Confidence 653
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=4.2e-27 Score=291.07 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=137.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~ 725 (1112)
...|+|+||||++...... ....+...+...... ...+.+.+...++..|+..|..+. .+.++||||+++.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4678999999998653211 111111111111111 112333444566677777776654 4569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC-----CCCHhHHHH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (1112)
.++.|+..|...|+.+..+||+|++.+|..++..|+.|.++|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 801 riGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
|+||+||.| .|.|++|+++.+..+...|.
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999996 89999999887665544443
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=248.35 Aligned_cols=181 Identities=35% Similarity=0.517 Sum_probs=148.5
Q ss_pred HHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001261 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 666 ~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ih 745 (1112)
...++.+|+.|.++.......+|.|.+.......|+..|+.+|... .+++||||+++..++.++..|...|+.+..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467888998988887788889999999999899999999988763 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccC
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAK 824 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~ 824 (1112)
|+|++.+|..++..|++|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 777
Q ss_pred chHHHHHHHhhccCCCChhHHHHH
Q 001261 825 YSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 825 ~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
++..|.+.|....+.+|+.|..+.
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 888999999999999999876543
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1e-26 Score=287.50 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=138.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~ 725 (1112)
...|+++||||+++..... ....+...+....... ..+.+.+...++..|+..|..+. .+.++||||+++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~----p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLD----PLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCC----CEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCC----CeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 4689999999998654222 1222222111111111 11333444566677777776655 4569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC-----CCCHhHHHH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (1112)
.++.|+..|...|+.+..+||++++.+|..++..|++|.+.|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 801 riGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
|+||+||. ..|.|++|+++.+..+...|.
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 689999999987665544433
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=238.97 Aligned_cols=168 Identities=40% Similarity=0.626 Sum_probs=143.3
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~ 761 (1112)
...+.+|.|.+..+....|+..|+.+|......+++||||++...++.++..|...|+.+..+||+|++.+|..++..|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999889999999999987656789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 001261 842 DDLKALAD 849 (1112)
Q Consensus 842 ~~l~~~~~ 849 (1112)
.+|..++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99888764
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=9.8e-25 Score=222.35 Aligned_cols=152 Identities=36% Similarity=0.621 Sum_probs=141.6
Q ss_pred ccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001261 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
...++.|.+.......|+..|..+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456888998888899999999988764 567999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..|.+.+...
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988888888877553
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=9.7e-25 Score=224.32 Aligned_cols=158 Identities=33% Similarity=0.603 Sum_probs=142.6
Q ss_pred CCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 686 ~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
..+.|.+...+...|+..|+.+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|..
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46788888888899999999988764 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChhH
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +...+..|.+.+......+|..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 55677788888877766777653
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=8.1e-25 Score=223.45 Aligned_cols=157 Identities=31% Similarity=0.562 Sum_probs=138.2
Q ss_pred CccEEEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 687 DITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+...+... |...|..++... ..+++||||++...++.++..|...++.+..+||+|++.+|..++..|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5677777777666 888888888764 56899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 9999999999999999999999999999999999999999999999999999999998888888888877766666543
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=221.51 Aligned_cols=156 Identities=29% Similarity=0.513 Sum_probs=136.2
Q ss_pred ccCCccEEEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001261 684 VNKDITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
...++.|.+..++... |+..|..++... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..++..|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3457888888777655 888888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCccEEEEeCCC------CCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 763 NVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|.++|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++.+...+..|.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999998877777877777654
Q ss_pred cCCC
Q 001261 837 EQVV 840 (1112)
Q Consensus 837 ~~~v 840 (1112)
...+
T Consensus 163 ~~~~ 166 (175)
T 2rb4_A 163 IKQL 166 (175)
T ss_dssp CEEE
T ss_pred cccc
Confidence 4333
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2.2e-23 Score=221.76 Aligned_cols=149 Identities=30% Similarity=0.517 Sum_probs=134.6
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.+.....+...|+..|..++.. ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 34455566778899999888875 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||||+++++|||||++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999999999999888888888876543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=4.1e-23 Score=230.09 Aligned_cols=149 Identities=30% Similarity=0.516 Sum_probs=133.8
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.+.+..+....|+..|..++... ..+++||||+++..++.|+..|...|+.+..+||+|++.+|..++..|++|.++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 566777788889999999888764 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||||+++++|||||++++||+|++|++...|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999888888888876543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=7e-24 Score=217.57 Aligned_cols=148 Identities=32% Similarity=0.483 Sum_probs=134.1
Q ss_pred CccEEEEeccc-chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 687 DITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+...+. ..|+..|..++.. ...+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666666 7788888887765 345799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999999999999999999999999999999888888777776644
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=213.18 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=123.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH-HHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ-IHSDIRKF 563 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q-~~~~~~~~ 563 (1112)
.....|+|+|.++++.++.++++|++++||+|||++|+++++..+..... ...++++||||||++|+.| +...+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999987654211 1236789999999999999 77888887
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---cccccCCceEEEeccchhhhccCChhHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+.. ++.+..++|+.........+..+++|+|+||+.|..++..... ....+..+.+|||||||++.+.++...+..
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 664 7888888888765544444445689999999999988865321 113567899999999999987777666543
Q ss_pred HHHhcC--------------CCCcEEEEecc
Q 001261 641 IVQNIR--------------PDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~--------------~~~q~il~SAT 657 (1112)
.+.... +..++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332221 67899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=4.2e-21 Score=232.80 Aligned_cols=304 Identities=19% Similarity=0.214 Sum_probs=170.0
Q ss_pred CCCCCChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.|| .|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+...+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 466 799999998654 4588999999999999999999999864 568999999999999999877
Q ss_pred HHHhhhcCceEEEEeCCCCh--------H-H-----------------------H---------------HHHHhcCCeE
Q 001261 561 RKFAKVMGVRCVPVYGGSGV--------A-Q-----------------------Q---------------ISELKRGTEI 593 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~--------~-~-----------------------~---------------~~~l~~~~~I 593 (1112)
..+ +++++.+.|.... . . . ...+..+++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 663 4555544432210 0 0 0 0111235799
Q ss_pred EEeCchHHHHHHHhcCCc----ccccCCceEEEeccchhhhccC--Ch-----h--------------------------
Q 001261 594 VVCTPGRMIDILCTSGGK----ITNLRRVTYLVMDEADRMFDMG--FE-----P-------------------------- 636 (1112)
Q Consensus 594 vV~Tp~~L~~~l~~~~~~----~~~l~~i~~vViDEah~~~~~g--f~-----~-------------------------- 636 (1112)
|||||..|++.+...... ...+....+|||||||+|.+.. |. .
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999998755432100 0124567899999999984310 00 0
Q ss_pred --------------------------------HHHHHHH--------------------h---------------cCCC-
Q 001261 637 --------------------------------QITRIVQ--------------------N---------------IRPD- 648 (1112)
Q Consensus 637 --------------------------------~i~~il~--------------------~---------------~~~~- 648 (1112)
.+..++. . +.|.
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 0000000 0 0000
Q ss_pred --------Cc----EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEE---eccc-ch---hHHHHHHHHH
Q 001261 649 --------RQ----TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE---VRPE-SD---RFLRLLELLG 709 (1112)
Q Consensus 649 --------~q----~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~---~~~~-~~---k~~~ll~~l~ 709 (1112)
.. +|++|||+++.+. +...| ...+.. .+ ...+.+. +... .. .+..+...|.
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~-~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNE-SY---GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCC-C----CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhh-ee---cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 11 3777777765100 00000 000000 00 0011111 0001 11 1133444444
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE--ecCcccccCCCCC---
Q 001261 710 EWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI--ATSVAARGLDVKE--- 782 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV--aT~v~~~GlDi~~--- 782 (1112)
... ..+.+||||+|...++.++..|.. +. +.++|.. ..+..+++.|+.+. .||+ ||..+++|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 332 357999999999999999988854 33 4556654 46788999999864 5776 8899999999998
Q ss_pred -ccEEEEeCCCCC-H-----------------------------hHHHHHhcccCCCCCccEEEEEecC
Q 001261 783 -LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 783 -v~~VI~~d~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+.+||++++|.. + ..+.|.+||+-|....--++++++.
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 899999999852 1 1235899999997544334555543
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=210.40 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=133.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+...+.......++++|.++++.+..|++++++|+||||||++|.++++..+..... +.+..+||++||++|+.|++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHH
Confidence 333344444456789999999999999999999999999999999999887765321 23568999999999999998
Q ss_pred HHHHHHhh-hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh-hccCCh
Q 001261 558 SDIRKFAK-VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM-FDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~-~~~gf~ 635 (1112)
..+..... ..+..+......... ....+++|+|||||+|++++.. .+.++++|||||||++ ++++|.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHH
Confidence 88776543 223333322211100 0013578999999999999864 4788999999999986 888887
Q ss_pred hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001261 636 PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 636 ~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~ 674 (1112)
..+...+....++.|+|+||||++... ++..+.+.|+
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 544444444457899999999999876 6666666665
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=1.7e-19 Score=219.52 Aligned_cols=309 Identities=17% Similarity=0.142 Sum_probs=200.9
Q ss_pred CChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998775 4579999999999999999999999972 6789999999999999999999987
Q ss_pred hhcCceEEEEeCCCC---------------------------------hHHHH------------------HHHhcCCeE
Q 001261 565 KVMGVRCVPVYGGSG---------------------------------VAQQI------------------SELKRGTEI 593 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~---------------------------------~~~~~------------------~~l~~~~~I 593 (1112)
..++++++++.|+.. ....+ ..+..+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 777888888777432 11222 223346899
Q ss_pred EEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC----------------------------------------
Q 001261 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---------------------------------------- 633 (1112)
Q Consensus 594 vV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---------------------------------------- 633 (1112)
||+||+.|++.+.... +..+....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 152 IALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765432 11224678999999998865 1
Q ss_pred ---------------ChhHHHHH----------------------------H----------------------------
Q 001261 634 ---------------FEPQITRI----------------------------V---------------------------- 642 (1112)
Q Consensus 634 ---------------f~~~i~~i----------------------------l---------------------------- 642 (1112)
+...+..+ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000000 0
Q ss_pred HhcCCC-CcEEEEeccccHHHHHHHHHhcCC-CeEEEE---c-CcccccCCccEEEEec--cc------chhHHHHHHHH
Q 001261 643 QNIRPD-RQTVLFSATFPRQVEILARKVLNK-PVEIQV---G-GRSVVNKDITQLVEVR--PE------SDRFLRLLELL 708 (1112)
Q Consensus 643 ~~~~~~-~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i---~-~~~~~~~~i~q~~~~~--~~------~~k~~~ll~~l 708 (1112)
..+... +.+|++|||+.+ ...+...+.-. +....+ . ..++ ..+. ..+... +. ......+...|
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSY-ECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEE-EEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCce-EEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 001122 678999999987 44444443333 232101 0 1111 1111 111111 10 11234455555
Q ss_pred Hhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCC---
Q 001261 709 GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVK--- 781 (1112)
Q Consensus 709 ~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~--- 781 (1112)
.... .+|.+|||++|...++.++.. .++.++.=..+++ +..+++.|+.....||+|| ..++.|||++
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 4433 367999999999999999873 3444443333455 3557778854445899998 7999999999
Q ss_pred C--ccEEEEeCCCCC---H----------------hH-----------HHHHhcccCCCCCccEEEEEecC
Q 001261 782 E--LELVINFDAPNH---Y----------------ED-----------YVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 782 ~--v~~VI~~d~p~s---~----------------~~-----------y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+ +.+||+..+|.. + .. ..|.+||+-|....--++++++.
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4 889999877641 0 11 24889999997655445555554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=8.5e-21 Score=211.36 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=127.7
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.+.+.|++++||+|||+++++++...+... +.++||||||++|+.||++.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999988999999999999999999888776531 2379999999999999999999987766
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
++.+..+++|..... ....+++|+|+||+.|.... ...+.++++|||||||++.+ ..+..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 778888888875432 22246899999999774321 13567899999999999874 478888888888
Q ss_pred CCcEEEEeccccHHH
Q 001261 648 DRQTVLFSATFPRQV 662 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~ 662 (1112)
..++|+||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 999999999998654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.76 E-value=3.8e-17 Score=200.36 Aligned_cols=318 Identities=14% Similarity=0.151 Sum_probs=194.2
Q ss_pred CChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|.|.+.+. .+..|+++|+.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58899998875 45689999999999999999999999998764 25789999999999999999999998
Q ss_pred hhcCceEEEEeCCCC----hH-----------H---HHHH----------------------------------------
Q 001261 565 KVMGVRCVPVYGGSG----VA-----------Q---QISE---------------------------------------- 586 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~----~~-----------~---~~~~---------------------------------------- 586 (1112)
...+++++.++|+.+ .. . .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 777777777666431 00 0 1110
Q ss_pred ----------------HhcCCeEEEeCchHHHHHHHhcCC--cccccCCceEEEeccchhhhcc----------------
Q 001261 587 ----------------LKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDM---------------- 632 (1112)
Q Consensus 587 ----------------l~~~~~IvV~Tp~~L~~~l~~~~~--~~~~l~~i~~vViDEah~~~~~---------------- 632 (1112)
....++|||+++..|++....... .......-.+|||||||.|.+.
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 011368999999887665432210 0001234579999999987320
Q ss_pred ----------CC------hhH--------HH-----------------------------------HH-------HH---
Q 001261 633 ----------GF------EPQ--------IT-----------------------------------RI-------VQ--- 643 (1112)
Q Consensus 633 ----------gf------~~~--------i~-----------------------------------~i-------l~--- 643 (1112)
.+ ... +. .+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred ----------------------h---cC------------------------------CCCcEEEEeccccHHHHHHHHH
Q 001261 644 ----------------------N---IR------------------------------PDRQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 644 ----------------------~---~~------------------------------~~~q~il~SAT~~~~~~~l~~~ 668 (1112)
. .. ....+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01235899999986 4445444
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecc--------cchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRP--------ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHG 738 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~--------~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g 738 (1112)
+.-.+..+.++. ++...+.. .+.... ...-...+...|.... .+|.+|||++|...++.++..|. .
T Consensus 395 lGl~~~~~~~~s-pf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~ 470 (620)
T 4a15_A 395 TGFEIPFKKIGE-IFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--F 470 (620)
T ss_dssp HCCCCCEEECCC-CSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--S
T ss_pred hCCCceeeecCC-CCCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--h
Confidence 433233333321 22222221 111111 1111233444443332 36889999999999999998876 2
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCCC--ccEEEEeCCCCC-------------------H
Q 001261 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH-------------------Y 795 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~~--v~~VI~~d~p~s-------------------~ 795 (1112)
+..- ...+++...+..+++.|+ +...||+|| ..++.|||+++ +.+||+..+|.. .
T Consensus 471 ~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~ 548 (620)
T 4a15_A 471 EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKG 548 (620)
T ss_dssp CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCH
T ss_pred cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCC
Confidence 2222 455566678999999999 888999997 49999999998 889999888752 1
Q ss_pred h----------HHHHHhcccCCCCCccEEEEEecC
Q 001261 796 E----------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 796 ~----------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
- ...|.+||+-|.-..--+++|++.
T Consensus 549 ~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 549 WEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred chHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 125999999997655445555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.72 E-value=2.5e-17 Score=178.01 Aligned_cols=139 Identities=22% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+++|.++++.++.+.++|++++||+|||++++.++... +..+||++||++|+.||+..+..|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998887642 457899999999999999988773
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+.+|||||||++.+.. +..++..++
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~----~~~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAES----YVQIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTT----HHHHHHTCC
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChH----HHHHHHhcc
Confidence 677 676766653 2579999999998765532 12458999999999987654 344555554
Q ss_pred CCCcEEEEeccccHH
Q 001261 647 PDRQTVLFSATFPRQ 661 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~ 661 (1112)
..++|+||||+++.
T Consensus 218 -~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 -APFRLGLTATFERE 231 (237)
T ss_dssp -CSEEEEEEESCC--
T ss_pred -CCEEEEEecCCCCC
Confidence 67899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.70 E-value=3.7e-17 Score=179.84 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=100.5
Q ss_pred cccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEe
Q 001261 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIA 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVa 770 (1112)
.....|+..|..+|.... .+.++||||++...++.|...|... |+.+..+||++++.+|..++..|++| .+. +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345789999999888764 4569999999999999999999885 99999999999999999999999998 666 7899
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecCC
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~~ 821 (1112)
|+++++|||++++++||+||+||++..|+|++||++|.|+.+.+ |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987765 5566643
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.74 E-value=1.4e-08 Score=124.46 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHH--HHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKT--LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT--~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
++.|..+++.++.++.+|+.|++||||| ++++++++..+.. ..+..+++++||..+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5677777765421 2367899999999999999998888776665
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+...... +... ....+ ..++-.+|+.. . +.... .....+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQKK-RIPE--DASTL---HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCCCC-SCSC--CCBTT---TSCC-------------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHHHh-ccch--hhhhh---HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 4321110 0000 00000 01122223221 0 11111 122368899999999 554 56778889999989
Q ss_pred CcEEEEecc
Q 001261 649 RQTVLFSAT 657 (1112)
Q Consensus 649 ~q~il~SAT 657 (1112)
.|+|++.-.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 999998766
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.09 E-value=0.0001 Score=91.09 Aligned_cols=66 Identities=23% Similarity=0.215 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+.+-|.+|+..++..++ .||.||.|||||.+.+-.+. ++.. .+.++||++||...+.++...+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~-------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK-------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 567999999999998765 57789999999987554444 4433 256899999999999888776654
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00019 Score=90.11 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+..+++.|..|+..++.+.-+||.|+.|||||.+... ++.++... .+.++||++||...+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999999877789999999999976443 33333321 2567999999999999888877664
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.01 E-value=0.00014 Score=85.90 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHCCCCCChHHHHHHHHHHHcC----C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSG----R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g----~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.-+.|..|++-|.+++..++.. . .++|.|+.|||||.+ +..++.++.... ...+++++||...|..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 3466788999999999977532 3 789999999999965 345555555421 136899999988876554
Q ss_pred HHHHHHhhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC
Q 001261 558 SDIRKFAKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 558 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g 633 (1112)
..+ ++.+..++ ..+ .+. .....+... ....+..+.+|||||++.+.
T Consensus 92 ~~~-------~~~~~T~h------~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~iiiDE~~~~~--- 141 (459)
T 3upu_A 92 KLS-------GKEASTIH------SIL-KINPVTYEENVLFEQK-------------EVPDLAKCRVLICDEVSMYD--- 141 (459)
T ss_dssp HHH-------SSCEEEHH------HHH-TEEEEECSSCEEEEEC-------------SCCCCSSCSEEEESCGGGCC---
T ss_pred hhh-------ccchhhHH------HHh-ccCcccccccchhccc-------------ccccccCCCEEEEECchhCC---
Confidence 433 22222111 000 000 000001000 11345678999999999643
Q ss_pred ChhHHHHHHHhcCCCCcEEEEecc
Q 001261 634 FEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 634 f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
...+..++..+....+++++.-.
T Consensus 142 -~~~~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 142 -RKLFKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp -HHHHHHHHHHSCTTCEEEEEECT
T ss_pred -HHHHHHHHHhccCCCEEEEECCH
Confidence 33555566666555566665533
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.97 E-value=0.00026 Score=87.59 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++-|.+++. .....++|.|+.|||||.+.+.-+...+.... .....+|+|++|+.++.++...+..++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 367899999997 34677999999999999876665655554321 1234799999999999999988887653
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.94 E-value=0.00027 Score=88.70 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
...+++.|..|+..++.+.-++|.|+.|+|||.+.. .++.++... .+..+|+++||...+.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 456789999999999988888999999999998643 444454432 356799999999999888777654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.86 E-value=3e-05 Score=93.86 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++.|..++..++.+..+++.|+.|+|||++ +..++..+.. .+..+++++||...+..+...+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 357899999999999999999999999999975 3334444433 2567899999998887665432
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH-hcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC-TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~-~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
+.....+ .+++.... ...........+++||||||+.+. ...+..++..++
T Consensus 253 ~~~a~Ti------------------------h~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTASTV------------------------HRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCEEEH------------------------HHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccHHHH------------------------HHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 2211111 11110000 000001233467899999999753 346667777777
Q ss_pred CCCcEEEEecc
Q 001261 647 PDRQTVLFSAT 657 (1112)
Q Consensus 647 ~~~q~il~SAT 657 (1112)
...++|++.-.
T Consensus 305 ~~~~lilvGD~ 315 (574)
T 3e1s_A 305 PGARVLLVGDT 315 (574)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEEecc
Confidence 77777776544
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.80 E-value=0.00014 Score=89.40 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+..+++.|..|+..++.+.-++|.||+|+|||.+.. .++.++... .+..+|+++||...+.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 456789999999999988888999999999998644 344444432 356899999999999988777654
No 102
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.71 E-value=4.7e-05 Score=72.71 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=62.3
Q ss_pred cCeEEEEEe--cCCC---ccchhhcccchhhhhHHhhhCCeEeccceeeCC-CC-CCC------CCCCceEEEEEeCCHH
Q 001261 1011 EHYEAELEI--NDFP---QNARWKVTHKETLGPISEWTGAAITTRGQYFPP-SR-IAG------PGERKLYLFIEGPTEQ 1077 (1112)
Q Consensus 1011 ~~~~~~~~I--Nd~p---q~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~-~~-~~~------~~~~~Lyl~ie~~~~~ 1077 (1112)
..+...|.| .+|| -.-+..=..+.|+.+|++.|||.|+++|+..-. ++ ... ...-+||++|.|++..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 345665555 5677 333777799999999999999999998864211 11 111 1245999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001261 1078 SVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1078 ~v~~A~~~i~~~~~e~ 1093 (1112)
.|++|+.+|+.||.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999763
No 103
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=68.67 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=60.6
Q ss_pred eEEEEEe--c-CCCc---cchhhcccchhhhhHHhhhCCeEeccce---eeCCCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 001261 1013 YEAELEI--N-DFPQ---NARWKVTHKETLGPISEWTGAAITTRGQ---YFPPSRIAGPGERKLYLFIEGPTEQSVKRAK 1083 (1112)
Q Consensus 1013 ~~~~~~I--N-d~pq---~~R~~~t~~~~~~~i~~~tg~~i~~kG~---~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~ 1083 (1112)
+...|.| . .||. ..+-.=..+.|+.+|++.|||.|.++|+ |+.+.... ...-+||++|.|++...|++|+
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~-e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGR-EAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSS-CCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccccccc-ccCCCcEEEEEeCCHHHHHHHH
Confidence 3444443 4 2563 3333346789999999999999999986 44443322 2346899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001261 1084 AELKRVLEDFTN 1095 (1112)
Q Consensus 1084 ~~i~~~~~e~~~ 1095 (1112)
.+|+.||.+.-.
T Consensus 91 ~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 91 KLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhchHH
Confidence 999999987653
No 104
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.58 E-value=0.00026 Score=77.92 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 696 PESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
..+.|+..|-.+|..+... .+||||++.....+.+..+|...++.+..+.|......+. -.++...|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 3578888888888776654 4999999999999999999999999999999986553221 124555665657766
Q ss_pred cccCC-----CCCccEEEEeCCCCCHhHH-HHHhcccCCCC----CccEEEEEecCCc
Q 001261 775 ARGLD-----VKELELVINFDAPNHYEDY-VHRVGRTGRAG----RKGCAITFISEED 822 (1112)
Q Consensus 775 ~~GlD-----i~~v~~VI~~d~p~s~~~y-~QriGR~gR~G----~~g~~i~~~~~~d 822 (1112)
.-|+| ...+++||.||..|++..= +|.+-|+.|.| +.-.+|.|++..-
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 66675 6789999999999998774 99998888873 2345777887644
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.14 E-value=0.003 Score=72.00 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.|+|+|...+..+...+-+++..+-+.|||.+++..++..+... .+..+++++||...|..++..+..++..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 67899999998776556788899999999998777666554432 35679999999999998888888877654
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.02 E-value=0.0041 Score=77.12 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+++-|.+++.. .+..++|.|..|||||.+.+--+...+.... -....+|+|+.|+..|.++...+...+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 3678899999999999876666655554311 1234789999999999999988887654
No 107
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.53 E-value=0.0015 Score=62.51 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=54.0
Q ss_pred EEEecCCCcc-chhhc--ccchhhhhHHhhhCCeEecccee--eCCCC------CCC--CCCCceEEEEEeCCHH-----
Q 001261 1016 ELEINDFPQN-ARWKV--THKETLGPISEWTGAAITTRGQY--FPPSR------IAG--PGERKLYLFIEGPTEQ----- 1077 (1112)
Q Consensus 1016 ~~~INd~pq~-~R~~~--t~~~~~~~i~~~tg~~i~~kG~~--~~~~~------~~~--~~~~~Lyl~ie~~~~~----- 1077 (1112)
.|.+++||-- ..-+| ..+.|+.+|++.|||.|.+||+= ....+ .|. ..+-+||++|+|.+..
T Consensus 7 ~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~ 86 (140)
T 2bl5_A 7 YVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEL 86 (140)
T ss_dssp ECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHH
T ss_pred EcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHH
Confidence 3456677732 22233 58999999999999999999852 10000 011 1356799999998874
Q ss_pred HHHHHHHHHHHHHH
Q 001261 1078 SVKRAKAELKRVLE 1091 (1112)
Q Consensus 1078 ~v~~A~~~i~~~~~ 1091 (1112)
.|++|+.+|+.+|.
T Consensus 87 ~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 87 KLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCC
Confidence 89999999999986
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.41 E-value=0.01 Score=60.57 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|+|||+.++-.+.+... .+..++|+.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--------TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEeec
Confidence 4666788999999999876555544432 24578888886
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.35 E-value=0.011 Score=59.84 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHH
Q 001261 491 MPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 491 t~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.|..++..+. .|..++++||+|+|||+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 46789999999999997533
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.34 E-value=0.0076 Score=61.78 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.+++|++|||||++++-.+.+... .+.+++|+.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--------~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEec
Confidence 3455778899999999876655555432 36789999886
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.32 E-value=0.029 Score=68.15 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+... .+..+++++||...|..++..++.++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 57899999998775567789999999999997776666555442 256799999999999999988888776543
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.0084 Score=63.00 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+++.|++|+|||++++-.+.+... .|.+++|+.|...- . ....++..+|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~--------~g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh--------cCCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 4556778899999999876665555432 35678888775421 0 0001122222110
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
..+.+.+...+...+... ..-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 123345566666655432 11235789999999964
No 113
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.035 Score=64.13 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||+.....+. ++.. .|.++++++ . .+.-+ ...+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d---- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN---- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC----
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC----
Confidence 467779999999986544333 2322 244565555 3 33333 23455555556665543332221
Q ss_pred HHHHhcCCeEEEeCchHHH-HHHHhcCCcccccCCceEEEeccchhhh---ccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 584 ISELKRGTEIVVCTPGRMI-DILCTSGGKITNLRRVTYLVMDEADRMF---DMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~-~~l~~~~~~~~~l~~i~~vViDEah~~~---~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
|..+. ..+.. .....+++||||.+-++. +..+...+..++..+.++.-+++++|+..
T Consensus 164 --------------p~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 164 --------------PIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------------HHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------------HHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 11111 12211 123468899999998643 33355667777777777777788888865
Q ss_pred HHHHHHHHHh
Q 001261 660 RQVEILARKV 669 (1112)
Q Consensus 660 ~~~~~l~~~~ 669 (1112)
......+..|
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5444444433
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.89 E-value=0.0077 Score=62.46 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|+-.+++|++|||||+.++--+.+... .+.++||+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEecc
Confidence 444567899999999887776666543 367899999864
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.53 E-value=0.023 Score=59.39 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|+-.+++|++|||||+.++--+.++.. .|.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCeEEEEeecC
Confidence 4666788899999999887777666533 367889998864
No 116
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.39 E-value=0.018 Score=66.35 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=60.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 585 (1112)
-.++.|+.|||||..+.- ++ . ....||++||++++..|.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~----~--------~~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RV----N--------FEEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HC----C--------TTTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHHHHH-Hh----c--------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 367789999999975432 11 1 124599999999998776655321 110
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 586 ~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
....+-|.|...++. +.. . ...-.+++||||||- |++.+ .+..++..++. .++|++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~-~-~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYG-K-GARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTT-S-SCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc---CCC-C-CCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 112334777766532 211 1 111247899999998 44433 33333444433 556666554
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.20 E-value=0.014 Score=57.34 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|..++++|++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.09 E-value=0.1 Score=52.15 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
...++++|++|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4578999999999997543
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.08 E-value=0.16 Score=58.56 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=70.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||+...-.+ .++.. .|.++++++ |.+.-+. ..+..++...++.+.....+......
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~i 170 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKL 170 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHHH
Confidence 46778999999998654333 33332 255666665 5554443 45566666677766544333221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
+ .+.+.. .....+++||||.+=++.. ......+..+.....++.-++++.||.....
T Consensus 171 ~-----------------~~al~~-----a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 171 A-----------------KEGVDY-----FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp H-----------------HHHHHH-----HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred H-----------------HHHHHH-----HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 1 111111 1112477888888865321 1133345556666677777778888865444
Q ss_pred HHHHHHh
Q 001261 663 EILARKV 669 (1112)
Q Consensus 663 ~~l~~~~ 669 (1112)
...+..|
T Consensus 229 ~~~a~~f 235 (443)
T 3dm5_A 229 YNQALAF 235 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 120
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.94 E-value=0.027 Score=58.30 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=28.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|.-.+++|++|||||+.++-.+.+... .+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH--------cCCceEEEEecc
Confidence 4566788999999999876655544432 256789998854
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.89 E-value=0.19 Score=51.50 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.|++|+|||..+. .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 679999999999997533 3444443
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.86 E-value=0.15 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
...++++|++|+|||..+ ..+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999753 3344443
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.83 E-value=0.098 Score=58.20 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.||+|+|||..+ -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 368999999999999753 3344443
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.83 E-value=0.067 Score=54.48 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|||||+-.+-.+-++... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 35667888999999997666555555443 4678999886
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.19 Score=55.53 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=20.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+..+++.|++|+|||++ +-.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 345799999999999975 4445555543
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.63 E-value=0.056 Score=65.39 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHc--CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~--g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+- .+.. .++|.+||.+-+..+. .|...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~~----------~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIAG----------RAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSSS----------CEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHHh----------CcEEECCCHHHHHHHH----HHhhC
Confidence 689999999998886 33468889999999965554443 3211 3689999988765432 22211
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
.|-+..|..++. .+..+++||||||=.+- .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~ll~~~- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQLVSRF- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHHHTTS-
T ss_pred -------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHHHhhC-
Confidence 144556765321 23458899999999753 56667776533
Q ss_pred CCCcEEEEecccc
Q 001261 647 PDRQTVLFSATFP 659 (1112)
Q Consensus 647 ~~~q~il~SAT~~ 659 (1112)
..|+||.|..
T Consensus 280 ---~~v~~~tTv~ 289 (671)
T 2zpa_A 280 ---PRTLLTTTVQ 289 (671)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CeEEEEecCC
Confidence 3688888864
No 127
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.50 E-value=0.067 Score=70.74 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.++|+-|.++|..- +.+++|.|.-|||||.+.+--++..+..... .-....+|+|++|+..|..+...+...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 35789999998763 8899999999999999887777777665321 0123479999999999999998887754321
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
... .... ......+..-..+-|+|...|+.-+.........+.. .+-|+||..
T Consensus 85 ~~~-----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~-~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LVQ-----RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDP-GFRIADQTE 137 (1232)
T ss_dssp HHH-----STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCT-TCEECCHHH
T ss_pred hhc-----Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCC-CCeeCCHHH
Confidence 000 0111 1111111112356789988876555443222222321 233778765
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.43 E-value=0.27 Score=53.01 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997543
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.41 E-value=0.12 Score=64.32 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred chhHHH-HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~-ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|... ++.++.....+.++||.+|+..-+..++..|... |+.+..+||+++..++..++..+.+|..+|||+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 344333 3333333334679999999999988888777653 79999999999999999999999999999999996
Q ss_pred c-ccccCCCCCccEEEEeCCCC
Q 001261 773 V-AARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 773 v-~~~GlDi~~v~~VI~~d~p~ 793 (1112)
. +...+.+.++.+||.-..-.
T Consensus 480 ~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp THHHHCCCCSCCCEEEEESCCC
T ss_pred HHHhhhhhccCCceEEecccch
Confidence 3 44568889999998655443
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.17 E-value=0.17 Score=55.92 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..+++.|++|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 131
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.10 E-value=0.15 Score=52.02 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=73.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCCh---
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGV--- 580 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~--- 580 (1112)
..+++...+|.|||.+++-.+++.+- .|.+|+|+--... .-. .+. .++..+++.+...--|-..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--------~G~rV~~vQF~Kg~~~~---gE~-~~l~~L~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--------HGKNVGVVQFIKGTWPN---GER-NLLEPHGVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--------TTCCEEEEESSCCSSCC---HHH-HHHGGGTCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEEeeCCCCCc---cHH-HHHHhCCcEEEEcccccccCCC
Confidence 46888899999999998888887754 4778888832211 000 000 1112223333222111110
Q ss_pred --HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEec
Q 001261 581 --AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 581 --~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SA 656 (1112)
..+.... -..|.... . ...-..+++|||||+-..+..++. ..+..++...+...-+|+++-
T Consensus 97 ~~~~~~~~a----------~~~l~~a~-~----~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 97 NREADTAAC----------MAVWQHGK-R----MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp GHHHHHHHH----------HHHHHHHH-H----HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CcHHHHHHH----------HHHHHHHH-H----HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 0011000 11111111 1 011256899999999877666644 456677777666777777777
Q ss_pred cccHHHHHHH
Q 001261 657 TFPRQVEILA 666 (1112)
Q Consensus 657 T~~~~~~~l~ 666 (1112)
-.|+.+..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 7777766554
No 132
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.09 E-value=0.054 Score=47.45 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
....|.|.. ..+...+ ..+.++.+|++.|||.|.+-. .+..+...++. +.|.| +...|..|+..|..++.
T Consensus 14 ~~~~i~Ip~--~~ig~IIGkgG~~Ik~I~~~tga~I~i~~----~~~~~~~~er~--v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPA--GKAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDKP--LRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECT--TTHHHHHTTTTHHHHHHHHHHTCEEEECS----SSCSSTTSCEE--EEEEE-CHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCh--hheeeeECCCCHHHHHHHHHHCCEEEEcC----CCCCCCCCceE--EEEEe-CHHHHHHHHHHHHHHhc
Confidence 455677653 2454444 568999999999999999854 22223334554 66779 99999999999999885
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 85 e 85 (85)
T 2opv_A 85 E 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.94 E-value=0.087 Score=65.64 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++-|.+++.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+.|+..|.++...+..++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4578999999875 4568999999999999887666665554321 1234789999999999999888887653
No 134
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.86 E-value=0.19 Score=58.46 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..+++.|++|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.69 E-value=0.05 Score=59.28 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=31.1
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ-~~ai~~i--l~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.++.-....++.|...-. .+.+ .+.+..+ ..++.+|+.|++|+|||..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344578887766666665553210 0111 1111111 24567999999999999743
No 136
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=93.67 E-value=0.23 Score=43.60 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=46.6
Q ss_pred cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q 001261 1032 HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQA 1097 (1112)
Q Consensus 1032 ~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~~~~~ 1097 (1112)
.+.++.+|++.|||.|.+-. ...+.+|...=.+.|.|. ..+|..|+..|..+|.+.-...
T Consensus 21 gG~~Ik~I~~~tga~I~I~~-----~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp GGHHHHHHHHHHCCEEEECC-----TTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHhCCEEEEcc-----CCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccc
Confidence 46999999999999998843 112223444556888997 8899999999999999876654
No 137
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.53 E-value=0.091 Score=44.88 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|..- .+...+- .+.++.+|++.|||.|.+-.. .++...=.+.|.|. ..+|+.|+..|..+|
T Consensus 4 ~~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 4 TTSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP--------VEGSTDRQVTITGS-AASISLAQYLINVRL 72 (76)
T ss_dssp CEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC--------CCCCCeEEEEEEeC-HHHHHHHHHHHHHHH
Confidence 35556666442 4444443 478999999999999999641 22333446778897 999999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.++
T Consensus 73 ~~E 75 (76)
T 2p2r_A 73 SSE 75 (76)
T ss_dssp TTC
T ss_pred Hcc
Confidence 765
No 138
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.44 E-value=0.11 Score=44.23 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=44.6
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
+...+ ..+.++.+|++.|||.|.+-. ...+.+|...-.+.|.|. ..+|+.|+..|..+|.|+
T Consensus 14 vg~IIGkgG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 14 VGAILGKGGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYE 76 (76)
T ss_dssp HHHHHCSTTHHHHHHHHHHCCEEEECC-----TTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC--
T ss_pred cceEECCCchHHHHHHHHhCCEEEECc-----CCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcC
Confidence 33333 357899999999999998843 212233445556888897 889999999999998653
No 139
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.30 E-value=0.17 Score=56.61 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 491 t~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+|..++..+. .|+ -+|+.|+.|+|||..+. .+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 467776665543 444 38999999999997544 3444443
No 140
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=93.29 E-value=0.18 Score=43.75 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|..- .+...+-+ +.++.+|++.|||.|.+-.. .++...-.+.|.| +..+|+.|+..|..++
T Consensus 6 ~~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 6 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITG-TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp CEEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT--------TSCSSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC--------CCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 56777777653 56666654 69999999999999998531 1233334678899 5999999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 75 ~~~ 77 (82)
T 1zzk_A 75 KQY 77 (82)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 141
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.28 E-value=0.25 Score=56.88 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=66.2
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc----ccCCCCCcc
Q 001261 712 YEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA----RGLDVKELE 784 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~----~GlDi~~v~ 784 (1112)
..++++||.+|++.-+..++..|.. .++.+..+||+.+..++...+..+..|...|+|+|.-.- .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 588999999999999998899999999999999994221 125667888
Q ss_pred EEEEeCC
Q 001261 785 LVINFDA 791 (1112)
Q Consensus 785 ~VI~~d~ 791 (1112)
+||.-.+
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886444
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.24 E-value=0.17 Score=49.06 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHcCCCEEEEcCCCChHHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~l 522 (1112)
...+..+++.|++|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467789999999999997543
No 143
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.20 E-value=0.29 Score=43.66 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=57.2
Q ss_pred cCeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
..+...|.|..- ..+..+=+ +.++..|++.|||.|.+- + ++++-=.+.|.|+ ...|.+|+..|..+
T Consensus 15 ~~~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~-----~~~~~~~V~I~G~-~e~v~~A~~~I~~i 81 (94)
T 2cte_A 15 TQASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQIP-----R-----PDDPSNQIKITGT-KEGIEKARHEVLLI 81 (94)
T ss_dssp SCEEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBCC-----C-----TTSSCCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CceEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEeC-----C-----CCCCCCeEEEEEC-HHHHHHHHHHHHHH
Confidence 357888888754 78888876 599999999999999882 1 1111126889999 99999999999999
Q ss_pred HHHHHHH
Q 001261 1090 LEDFTNQ 1096 (1112)
Q Consensus 1090 ~~e~~~~ 1096 (1112)
+.+....
T Consensus 82 ~~~~~~~ 88 (94)
T 2cte_A 82 SAEQDKR 88 (94)
T ss_dssp HHHHHTC
T ss_pred hhccccc
Confidence 9887644
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.08 E-value=0.3 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+.+++.|++|+|||..+ ..++..+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999753 3344433
No 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.85 E-value=0.19 Score=55.35 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHH-HH-HHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QAL-PV-IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~-~ai-~~-il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+++.|...-. .|+.. +.+ .. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44678888766666665543100 01000 000 00 124567999999999999753
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.80 E-value=0.78 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEec
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.+... ....+..++........+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999987532 23345555555555554554443
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.76 E-value=0.22 Score=56.36 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999743
No 148
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.31 Score=56.18 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 463 PKPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
..|-.+|.+.+--..+.+.|.. +.+..|--++...++ ..+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4567789999877777776653 112223222222211 246799999999999975
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.39 E-value=0.58 Score=51.85 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.++.-...+++.|...-. .|. ..|.++ ..+.+|+.||+|+|||+.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44578888777777666553210 000 001111 1356999999999999754
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.30 E-value=0.27 Score=55.82 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.++++|++|+|||... ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6899999999999753 3344443
No 151
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.28 E-value=0.18 Score=55.90 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEec
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.|........+..++...+....+|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999988622233445555555555555555443
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.22 E-value=0.89 Score=51.86 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.|++|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999754
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.08 E-value=0.31 Score=54.32 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.|++|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.03 E-value=1.7 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=16.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.|++|+|||... ..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5889999999999753 3334443
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.02 E-value=0.16 Score=53.17 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 156
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=91.95 E-value=0.17 Score=46.31 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=53.0
Q ss_pred EEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
...|.|..- .+...|= .+.++.+|++.|||.|.+-..- .+..+..--.+.|.| +.++|++|+..|..+|.+
T Consensus 8 ~~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-----~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQL-----PPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCC-----CTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCcc-----CCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 456666542 5666655 4689999999999999986432 122233345678889 999999999999999887
Q ss_pred HH
Q 001261 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
..
T Consensus 80 ~~ 81 (107)
T 2hh2_A 80 PL 81 (107)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 157
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=91.95 E-value=0.31 Score=42.96 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. .| +...=.+.|.|. .++|+.|+..|..+|
T Consensus 13 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~------~~--~~~~~~v~I~G~-~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 13 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP------LE--GSEDRIITITGT-QDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC------CS--SSSEEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC------CC--CCCccEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46667776432 455555 4579999999999999998531 12 233346778897 899999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 82 ~e~ 84 (89)
T 1j5k_A 82 KQY 84 (89)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
No 158
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.94 E-value=0.097 Score=57.68 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++|++|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.82 E-value=0.89 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.|++|+|||...- .++..+
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 5679999999999997533 344433
No 160
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=91.77 E-value=0.31 Score=43.21 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...|= .+.++.+|++.|||.|.+-..- ++...-.+.|.|. ...|+.|+.+|..+|
T Consensus 14 ~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--------~g~~~r~v~I~G~-~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 14 VMTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS--------GGLPERSCMLTGT-PESVQSAKRLLDQIV 82 (92)
T ss_dssp CEEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC--------TTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC--------CCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 45667777442 4555544 4789999999999999985421 2334456788897 899999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 83 ~~~ 85 (92)
T 1x4n_A 83 EKG 85 (92)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.48 E-value=0.64 Score=51.58 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=29.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+.+.|...-. .|.+ .|.++ ..+.+|+.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34688888766666665543100 0000 01111 1257999999999999753
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.19 Score=57.26 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=30.9
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|=-....+.|... .+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 456888887555555555431 1112211221111 12378999999999999753
No 163
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.25 E-value=1 Score=49.20 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++||||++-.+. +......+..+...+.++.-++++.++........+.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 467899999995432 2112334444455555655555677765444333333
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.19 E-value=0.32 Score=54.62 Aligned_cols=42 Identities=10% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|. ++......+..++...+....+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4577999999998 44444455666666665555555555443
No 165
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=91.06 E-value=0.42 Score=43.56 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred EEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
..+|.|..- .+...|= .+.++.+|++.|||.|.+... . ++.+--.+.|.|. .++|++|+..|..+|.+
T Consensus 12 ~~~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~~------~--~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 12 GIDVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQD------D--GTGPEKIAHIMGP-PDRCEHAARIINDLLQS 80 (106)
T ss_dssp CEEEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECSS------C--SSSSEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEecC------C--CCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 345666432 4555554 478999999999999998531 0 1223345778886 89999999999999987
Q ss_pred HH
Q 001261 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
.-
T Consensus 81 ~~ 82 (106)
T 2hh3_A 81 LR 82 (106)
T ss_dssp HC
T ss_pred cc
Confidence 63
No 166
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.45 E-value=1.4 Score=47.87 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=29.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH---------HcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI---------MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~i---------l~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.++.-...+++.|...- .+|.. ..++.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3457888766666666554311 01111 13568999999999999753
No 167
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=90.42 E-value=0.24 Score=44.19 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001261 1009 MPEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1009 ~~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~ 1087 (1112)
.|..+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. +......++ .+.|.| +...|+.|+..|.
T Consensus 11 ~p~~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~ 81 (94)
T 1x4m_A 11 GPGNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQD----GPQNTGADK--PLRITG-DPYKVQQAKEMVL 81 (94)
T ss_dssp CCCCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCS----CCCSSCSCE--EEEEEE-CTTTHHHHHHHHH
T ss_pred CCCcEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCC----CCCCCCCce--EEEEEe-CHHHHHHHHHHHH
Confidence 35667888888542 555555 4589999999999999987432 111111334 466789 8889999999999
Q ss_pred HHHHH
Q 001261 1088 RVLED 1092 (1112)
Q Consensus 1088 ~~~~e 1092 (1112)
.+|.+
T Consensus 82 ~~i~~ 86 (94)
T 1x4m_A 82 ELIRD 86 (94)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 99865
No 168
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.25 E-value=0.46 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.+.-++++|++|+|||+.....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678888999999998654433
No 169
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=90.15 E-value=0.49 Score=39.88 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.4
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+...|.|.. ..+...+= .+.++.+|++.|||.|.+-.. +.+.=.+.|.|. ..+|..|+.+|..+|.
T Consensus 5 ~~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----------~~~er~v~I~G~-~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----------CCSEEEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----------CCCcEEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 344444433 13444443 468999999999999998431 222335788898 9999999999999987
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 72 e 72 (73)
T 2axy_A 72 E 72 (73)
T ss_dssp C
T ss_pred c
Confidence 6
No 170
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=90.10 E-value=0.88 Score=41.27 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=50.9
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
....|.|..- .+...+= .+.++.+|++.|||.|.+-..- +..+..--.+.|.|..+ .|+.|+..|..+|.
T Consensus 15 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~------~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 15 VFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKES------EGTLLLSRLIKISGTQK-EVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSS------CCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCC------CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHh
Confidence 3556666432 5655554 5789999999999999985421 11111223577889887 79999999999997
Q ss_pred HHH
Q 001261 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 86 e~~ 88 (104)
T 1we8_A 86 EDE 88 (104)
T ss_dssp HHH
T ss_pred hCh
Confidence 654
No 171
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.00 E-value=1.2 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+++.|++|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.00 E-value=1.1 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-++++|++|+|||+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456788899999999975443
No 173
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.94 E-value=1.1 Score=39.94 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=56.0
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.|...|.|..- .++-.+=+ +.++..|++.|||.|.+- +...|. ...-.+.|.|+ ...|..|+..|..|+
T Consensus 16 ~~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~~~--~~~~~V~I~G~-~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 16 SFKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQFP-----DKDDGN--QPQDQITITGY-EKNTEAARDAILRIV 85 (97)
T ss_dssp TCEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEECC-----CTTTCS--SCSSEEEEESC-HHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEec-----CCCCCC--CCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 47888888754 77777765 899999999999999873 222222 23345778898 889999999999999
Q ss_pred HHHHH
Q 001261 1091 EDFTN 1095 (1112)
Q Consensus 1091 ~e~~~ 1095 (1112)
.+.-.
T Consensus 86 ~e~e~ 90 (97)
T 2ctl_A 86 GELEQ 90 (97)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
No 174
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.89 E-value=0.53 Score=41.97 Aligned_cols=70 Identities=26% Similarity=0.309 Sum_probs=54.1
Q ss_pred cCeEEEEEecCCCccchhhcccc-hhhhhHHhhh-CCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHK-ETLGPISEWT-GAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~-~~~~~i~~~t-g~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~ 1088 (1112)
+.....|.|+- ...|..+-.+ .++.+|++.| ||.|.+ |. .|...-.+.|.|+++ .|++|+.+|+.
T Consensus 15 ~~vt~~i~Ip~--~~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~-----~g~~~~~V~I~G~~~-~v~~A~~~I~~ 81 (95)
T 2ctj_A 15 NIAEVEVSIPA--KLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRGPSS-DVEKAKKQLLH 81 (95)
T ss_dssp SSCCEEEECCH--HHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEESCHH-HHHHHHHHHHH
T ss_pred hcEEEEEEECH--HHHhhhCCCCchhHHHHHHHcCCCEEEe-----CC-----CCCCcceEEEEcCHH-HHHHHHHHHHH
Confidence 34566777764 3777777655 9999999999 999965 32 234445789999988 99999999999
Q ss_pred HHHHH
Q 001261 1089 VLEDF 1093 (1112)
Q Consensus 1089 ~~~e~ 1093 (1112)
|+.+.
T Consensus 82 iv~e~ 86 (95)
T 2ctj_A 82 LAEEK 86 (95)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98774
No 175
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.85 E-value=0.55 Score=61.02 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=65.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----ccccCCCCCcc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARGLDVKELE 784 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~GlDi~~v~ 784 (1112)
.+.++||.+|++.-|.+++..|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. +++.++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 456899999999999999999998 4679999999999988888999999999999999942 222 5667899
Q ss_pred EEEEeCC
Q 001261 785 LVINFDA 791 (1112)
Q Consensus 785 ~VI~~d~ 791 (1112)
+||.-.+
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 9986433
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.81 E-value=0.6 Score=54.33 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.||+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 35899999999999753
No 177
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=89.45 E-value=0.37 Score=41.69 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=50.4
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+= .+.++.+|++.|||.|.+-.. .++...=.+.|.|.. .+|+.|+..|..+|
T Consensus 5 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i 73 (82)
T 1wvn_A 5 QTTHELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSA-ASISLAQYLINARL 73 (82)
T ss_dssp CEEEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECH-HHHHHHHHHHHHHT
T ss_pred cEEEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCH-HHHHHHHHHHHHHH
Confidence 45667777543 4555554 468999999999999998642 123333457778965 89999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 74 ~~~ 76 (82)
T 1wvn_A 74 SSE 76 (82)
T ss_dssp C--
T ss_pred Hhh
Confidence 876
No 178
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=89.31 E-value=0.73 Score=38.60 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.....|.|+.- .++..+ ..+.++.+|++.|||.|.+- + .|++.=.+.|.|+. ..|+.|+.+|..|+
T Consensus 4 ~~~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i~-----~-----~g~~~~~V~I~G~~-~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRIP-----P-----DSEKSNLIRIEGDP-QGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEECC-----C-----CCSSSEEEEEEESS-HHHHHHHHHHHHTC
T ss_pred eEEEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEEC-----C-----CCCcccEEEEEcCH-HHHHHHHHHHHHHh
Confidence 34567777754 788888 66889999999999999762 2 12233367888995 78999999998864
No 179
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.28 E-value=1 Score=58.88 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=71.0
Q ss_pred chhHHHHH-HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|....+ ..+.....+.++||.|++..-+.+.+..|... ++.+..++|..+..++..++..+..|..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45554333 23333334569999999999999888888753 67899999999999999999999999999999995
Q ss_pred -cccccCCCCCccEEEE
Q 001261 773 -VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 -v~~~GlDi~~v~~VI~ 788 (1112)
.+...+.+.++.+||.
T Consensus 715 ~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred HHHhCCccccccceEEE
Confidence 4455688888888885
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.24 E-value=1.3 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=16.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.|+.|+|||..+. .+...+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 37899999999997543 334443
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.18 E-value=1.1 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
++.+|+.||+|+|||..+- .+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHh
Confidence 3579999999999997533 334343
No 182
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.07 E-value=0.58 Score=52.73 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.01 E-value=2.3 Score=47.16 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=32.2
Q ss_pred ceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 618 VTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 618 i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
+.+++||-+-++- +..+...+..+...+.++..++++.+|....+...+..+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788776532 1223445555656666777778888887666555555443
No 184
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.87 E-value=1.5 Score=45.90 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=28.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-++++|++|+|||+.++..+...+. .+..++++.- .....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--------~~~~v~~~~~-e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--------MGEPGIYVAL-EEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--------TTCCEEEEES-SSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEc-cCCHHHHHHHHH
Confidence 4567888999999999754444333322 1335666653 233344444443
No 185
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.29 Score=56.53 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=30.4
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.+--....+.|.. +.+..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345678888755555555442 1111111111111 012367999999999999753
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.63 E-value=1.1 Score=51.45 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.1
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|--..+.+.|.. +.+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 345688887755555555442 11111111111111 12367999999999999753
No 187
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.30 E-value=1.6 Score=44.91 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=55.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.+...... .+..+...|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999998888765 788999999998765543 344567799999942 1 234677888
Q ss_pred cEEEEe
Q 001261 784 ELVINF 789 (1112)
Q Consensus 784 ~~VI~~ 789 (1112)
.+||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 888863
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.08 E-value=1.8 Score=45.86 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.|++|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
No 189
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.08 E-value=1 Score=52.48 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=23.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+++.|++|+|||+.++..+...... .|..|+|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-------~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-------TNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-------SSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 34567888999999996544444333222 144567765
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.01 E-value=3.1 Score=45.55 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.-++++|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4467889999999975443
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.00 E-value=0.44 Score=50.29 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCceEEEeccchhhhc-----cCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFD-----MGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~-----~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
....+|||||.-.+++ ......+..++..+...-.+|+++.....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4577999999998776 33333466666655433345666555433
No 192
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.79 E-value=3.1 Score=47.45 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++|+|+.|+|||+.+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568889999999997544
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.54 E-value=1 Score=54.44 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh--hcCCccEEEecCc-c----------cccCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF--KSNVCNLLIATSV-A----------ARGLD 779 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F--~~g~~~VLVaT~v-~----------~~GlD 779 (1112)
..+.+||++|++.-+......|...|+.+..++|+++..++..++..+ ..+..+|||+|+- + ...++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 367999999999999999999999999999999999999999888888 5788999999962 1 12234
Q ss_pred CCCccEEEE
Q 001261 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
...+.+||.
T Consensus 163 ~~~i~~iVi 171 (591)
T 2v1x_A 163 ARRFTRIAV 171 (591)
T ss_dssp TTCEEEEEE
T ss_pred ccCCcEEEE
Confidence 556777775
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.48 E-value=0.97 Score=50.39 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++........+|+++
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999987532 2334555555555544455544
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.16 E-value=0.77 Score=53.44 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+++.|++|+|||..++ -++.++... .+..|+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~s 236 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYS 236 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEE
Confidence 4457788999999996444 444443321 144567765
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.13 E-value=1.5 Score=45.00 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.|.-++++|++|+|||+.+...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35568889999999997544433
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.11 E-value=0.58 Score=52.78 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.|++|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 198
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.96 E-value=1.3 Score=39.44 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=54.0
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|+.- ..+..+ ..+.++..|++.|||.|.+- ++|. ...=.+.|.|+ .+.|+.|+..|..|+
T Consensus 16 ~vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i~----~~g~-----~~~~~V~I~G~-~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 16 MVSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRFP----QSGA-----PDPNCVTVTGL-PENVEEAIDHILNLE 83 (95)
T ss_dssp CCCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEECC----CTTC-----SCTTEEEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEec----CCCC-----CCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46677888754 666665 56789999999999999981 1111 12335778898 589999999999999
Q ss_pred HHHHHH
Q 001261 1091 EDFTNQ 1096 (1112)
Q Consensus 1091 ~e~~~~ 1096 (1112)
.+....
T Consensus 84 ~e~~~~ 89 (95)
T 2ctm_A 84 EEYLAD 89 (95)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 887653
No 199
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.60 E-value=2.8 Score=49.76 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCCccEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~v~~V 786 (1112)
..+.+||++|++.-+......|...|+.+..+||+.+..++..++..+..|..+|||+|.- + ...+...++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3589999999999999999999999999999999999999999999999999999999942 1 122444567777
Q ss_pred EE
Q 001261 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 200
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.59 E-value=1.1 Score=52.13 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++++|++|||||+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 3457788999999997543
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.55 E-value=1.7 Score=47.73 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35679999999987532 2334455555544444444443
No 202
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.50 E-value=1.1 Score=40.51 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=52.3
Q ss_pred eEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+...|.|+.- .++..+=+ +.++.+|++.|||.|.+-- +|. ..=.+.|.|+. ..|+.|+..|..++.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I~~----~g~------~~~~V~I~G~~-e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHVPA----PEL------QSDIIAITGLA-ANLDRAKAGLLERVK 83 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEECCC----TTT------TCCEEEEEECH-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEecC----CCC------CcceEEEEcCH-HHHHHHHHHHHHHHh
Confidence 5667777643 67777655 8999999999999998721 222 11278888986 889999999999998
Q ss_pred HHH
Q 001261 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 84 e~e 86 (104)
T 2ctk_A 84 ELQ 86 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 765
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.43 E-value=0.72 Score=53.27 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=32.7
Q ss_pred CcccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLN---YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~---~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.+--..+.+.|...= +..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 45578999887777776665421 11111111111 113467999999999999743
No 204
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.40 E-value=2.6 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
+..|.-++++|++|+|||+.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34677789999999999975544433
No 205
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=86.33 E-value=1.1 Score=43.99 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|.. ..+.+.+= .+.++.+|++.|||.|.+-+..+| ..++ =.+.|.| +..+|..|+..|..+|
T Consensus 88 ~~~~~i~vp~--~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~-----~~~~--~~v~I~G-~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 88 PVTLRLVVPA--SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP-----NSTE--RAITIAG-IPQSIIECVKQICVVM 157 (160)
T ss_dssp SEEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCST-----TCCE--EEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECh--hheeeEECCCCHHHHHHHHHhCCeEEECCCCCC-----CCCc--eEEEEEc-CHHHHHHHHHHHHHHH
Confidence 3566777753 35666654 578999999999999999764332 2233 3567889 8999999999999998
Q ss_pred HH
Q 001261 1091 ED 1092 (1112)
Q Consensus 1091 ~e 1092 (1112)
.|
T Consensus 158 ~e 159 (160)
T 2jzx_A 158 LE 159 (160)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.32 E-value=0.8 Score=52.36 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|=-..+.+.|.. +.+..|--++...+ --.+.+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345678887655555554442 11122222222111 12367999999999999743
No 207
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.29 E-value=2.7 Score=46.06 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
...++++|++|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
No 208
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.15 E-value=4.4 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
+.-++++|++|+|||+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345677799999999754433
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.12 E-value=1.2 Score=51.89 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999753
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.77 E-value=1.3 Score=56.18 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
..+++++|++|+|||..+-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997533
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.56 E-value=1.8 Score=50.91 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=25.8
Q ss_pred ceEEEeccchhhhccC----------ChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 618 VTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 618 i~~vViDEah~~~~~g----------f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.++|+|||+|.|.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999886421 11234444555555556777777744
No 212
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=85.42 E-value=4.8 Score=40.62 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=50.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
++++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCc
Confidence 45799999999999887776655 478899999998766543 33333 478999993 23222 577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 77887776
No 213
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.27 E-value=1.5 Score=48.05 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=22.7
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.|.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999875422 233445555544455555544
No 214
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.23 E-value=3.6 Score=43.49 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc--ccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~--~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ .+...|+|+|. .+. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999999888877664 88999999999876554433 24678999993 122 3567788
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888875
No 215
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.20 E-value=3.1 Score=45.60 Aligned_cols=17 Identities=6% Similarity=-0.261 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
..|+.||.|+|||..+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58889999999997544
No 216
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.18 E-value=2.3 Score=47.25 Aligned_cols=38 Identities=16% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEE
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~ 654 (1112)
....++||||+|.|... ....+..++...+....+|++
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999987532 233455555555554444443
No 217
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.87 E-value=0.62 Score=50.90 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.5
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578889999999974
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.63 E-value=1.2 Score=46.77 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=28.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-+++.|++|+|||..++-.+++.+.. .+..++|+.-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCCceeeccc-CCHHHHHHHHH
Confidence 35668889999999996544444443332 13346666532 22344444443
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.43 E-value=1.4 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
.|.-++++|++|+|||+.+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456788899999999975544333
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.31 E-value=5.3 Score=46.90 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=30.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc--chhHHHHHHHHHHHHhhhcCceEEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP--TRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P--treLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
.++++|.+|+|||+.+...+. ++.. .|.+++++.. .+..+..+. ..+....++.+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~-------~G~kVllVd~D~~r~aa~~qL---~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR-------KGWKTCLICADTFRAGAFDQL---KQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH-------TTCCEEEEEECCSSSHHHHHH---HHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEeccccchhHHHHH---HHHhhccCceEEc
Confidence 477789999999986544333 3322 2455666663 344444332 2233334555444
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.25 E-value=0.66 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=16.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++++|++|+|||+.+...+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688899999999976544333
No 222
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.17 E-value=1.7 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-++++|++|+|||+.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 566788899999999975443
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.11 E-value=1.4 Score=59.71 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred HHHHHc------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 498 LPVIMS------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 498 i~~il~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
+..++. ++.++++||+|+|||..++..+..... .|..|+|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEccc
Confidence 556665 678999999999999876665554432 366788877543
No 224
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.09 E-value=0.77 Score=51.15 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|++|+|||..++ -++.++.. .+..|+|++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~-------~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN-------DDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH-------TTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEe
Confidence 34557778999999996444 44444332 245677776
No 225
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.99 E-value=2.5 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCceEEEeccchhhhccC--ChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g--f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|.|.... +...+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345799999999886432 22344444443 334577777764
No 226
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.54 E-value=6.2 Score=47.70 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
...+..|..++++||+|+|||+.+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567899999999999999743
No 227
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.49 E-value=7 Score=40.80 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
...+||.|+++.-+..++..+.. .++.+..++|+.+.......+.. ..+|||+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999888777765 38899999999998766554432 478999994 222 34577888
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88885
No 228
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.38 E-value=5 Score=41.67 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----ccc--cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AAR--GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~--GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999999888775 47899999998765544333 45789999941 112 356677
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.25 E-value=4.5 Score=46.62 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=31.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
.++++|++|+|||+...-.+... ... .|.+++++. |.+..+... +..+....++.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~------~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~ 160 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK------HKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFF 160 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT------SCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh------cCCeEEEEecCCCCccHHHH---HHhhcccCCeeEE
Confidence 46677999999998655444332 221 145666665 555544432 2233334455543
No 230
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=83.17 E-value=2 Score=42.27 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=54.6
Q ss_pred cCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
..+.+.|.|.. ..+.+.+- .+.++.+|++.|||.|.+-+. ..|.. ...-.+.|.| +...|+.|+..|..+
T Consensus 83 ~~~~~~i~vp~--~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-----~~~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 83 VKLETHIRVPA--SAAGRVIGKGGKTVNELQNLTAAEVVVPRD-----QTPDE-NDQVIVKIIG-HFYASQMAQRKIRDI 153 (163)
T ss_dssp CCEEEEEEEET--TTHHHHHCGGGHHHHHHHHHHCCEEECCTT-----CCCCT-TSEEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCh--hheeeEEcCCChHHHHHHHHhCCeEEECCC-----CCCCC-CCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 35677888864 25666664 478899999999999987432 12222 2234688999 788999999999999
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
|.+.-
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98763
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.14 E-value=4.5 Score=44.11 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
+.-++++|++|+|||+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34566789999999975443
No 232
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.88 E-value=2.7 Score=49.16 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=38.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.|....+.|-||||||+++.. ++.. .+..+|||+|+..+|.|++..+..|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355678899999999975332 2222 123479999999999999999998864
No 233
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.56 E-value=1.6 Score=49.68 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.4
Q ss_pred CCEEE--EcCCCChHHHHH
Q 001261 505 RDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii--~a~TGsGKT~~~ 521 (1112)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999753
No 234
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=82.27 E-value=3 Score=40.80 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AAR----GIDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTT----TCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hhc----CCch
Confidence 45789999999998887776665 478899999998766543 33333 4689999942 221 1577
Q ss_pred CCceEEEec
Q 001261 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.-
T Consensus 102 ~~~~~Vi~~ 110 (163)
T 2hjv_A 102 ENISLVINY 110 (163)
T ss_dssp SCCSEEEES
T ss_pred hcCCEEEEe
Confidence 778887763
No 235
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.21 E-value=2.9 Score=43.47 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 358999999999999999888764 67889999999876654433 25789999942 1 13456667
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777774
No 236
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.97 E-value=1.8 Score=37.39 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001261 1010 PEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1010 ~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~ 1088 (1112)
+..+...|.|.+ ..++..+ ..+.++.+|++.|||.|.+-. . ..++ .+.|.|.. +.|++|+.+|..
T Consensus 7 ~~~~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~----~~~~--~v~ItG~~-e~v~~A~~~I~~ 72 (83)
T 2dgr_A 7 GGQTTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R----DKEP--VFAVTGMP-ENVDRAREEIEA 72 (83)
T ss_dssp CCSEEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S----SSCC--EEEEEECT-TTHHHHHHHHHH
T ss_pred CCceEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C----CCCC--eEEEEcCH-HHHHHHHHHHHH
Confidence 345677787765 4666666 467899999999999999821 1 1233 37788876 799999999988
Q ss_pred HH
Q 001261 1089 VL 1090 (1112)
Q Consensus 1089 ~~ 1090 (1112)
++
T Consensus 73 ~i 74 (83)
T 2dgr_A 73 HI 74 (83)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.24 E-value=3.7 Score=45.35 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=24.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|++|+|||..++..+. .+..... ..+.+..++++.-
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~~~-~gg~~~~vlyi~~ 149 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLPPE-KGGLSGKAVYIDT 149 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSCGG-GTCCSCEEEEEES
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhcccc-cCCCCCeEEEEEC
Confidence 356788899999999975444333 3221100 0112446777764
No 238
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=81.16 E-value=5.6 Score=38.84 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----G~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR----GIDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT----TCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hhc----CCCc
Confidence 45799999999998877776655 478889999998766543 33333 4689999942 211 1567
Q ss_pred CCceEEEec
Q 001261 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.-
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
No 239
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.08 E-value=1.5 Score=51.36 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 240
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.02 E-value=2.9 Score=43.74 Aligned_cols=72 Identities=14% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+..... .+..+..+...|+|+|. .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999998888765 567888888876433 23445567789999993 3333 3667778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88775
No 241
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=80.92 E-value=33 Score=37.41 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEEeccchhhhc---cCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 618 VTYLVMDEADRMFD---MGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 618 i~~vViDEah~~~~---~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
--+|||||+|.+.. ..+...+..++... +... ++++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcC
Confidence 35899999999864 34555565555543 2333 444444
No 242
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.74 E-value=4.5 Score=45.46 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888765 7889999999987665443 44567899999942 1 23467788
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888885
No 243
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.60 E-value=2.6 Score=46.47 Aligned_cols=51 Identities=12% Similarity=-0.008 Sum_probs=28.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.|.-+|+.|++|+|||..++. ++.++..+ +..+|+++.- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 455688889999999964444 44333321 3456776632 223444444433
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.32 E-value=3.2 Score=46.74 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|.-++|.|++|+|||.. ++.++..+... +..|+|+..
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEEC
Confidence 45688889999999964 44444444331 345666664
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.20 E-value=3 Score=46.70 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=24.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|+.|+|||+.++..+... .. .+..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA-------AGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH-------TTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-------CCCeEEEEEC
Confidence 35668889999999997544444333 32 1445666653
No 246
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=80.16 E-value=4 Score=40.40 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +. .-.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~----~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA----RGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC----TTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh----cCCCc
Confidence 45899999999998877766654 578899999998876553 33333 4689999942 11 22577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 78888884
No 247
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.16 E-value=5.1 Score=40.50 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... + .+...|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999999988888764 6788999999886554322 2 34678999994 1222 346677
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 248
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.11 E-value=11 Score=38.04 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCccE
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKELEL 785 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v~~ 785 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+. ....|+|+|. .+. ..+++.++.+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999876 467889999887654443332 2478999994 222 3466777888
Q ss_pred EEE
Q 001261 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 249
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.07 E-value=3.7 Score=51.17 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.++|++|++|+|||..+-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35679999999999997543
No 250
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.93 E-value=22 Score=37.08 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=51.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCcc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v~ 784 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.+.......+ .....|+|+|.- +. ..+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 48999999999999988887664 57788899988765543332 345789999941 11 235777888
Q ss_pred EEEE
Q 001261 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.82 E-value=1.7 Score=48.74 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|.-++|.|++|+|||+. ++.++..+.. .+..++++..-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeccc
Confidence 45688889999999964 4444444433 244577776543
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.64 E-value=2.5 Score=52.47 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=33.7
Q ss_pred CCcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
..|-.+|...+.-..+.+.|... .+..|.-++... +...+.+|+.||.|+|||+.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 34557899998888877777642 112221111100 012357999999999999643
No 253
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.58 E-value=9.7 Score=45.35 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=65.5
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH
Q 001261 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL 587 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l 587 (1112)
.+....+....+..++..+... ..+.++||.|+|+.-|..++..+...+. .++.+..++|+.+..... ..+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKER-----DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHT-----TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHH
T ss_pred CchhHhhHHHHHHHHHHHHhhc-----CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHH
Confidence 3334445444454555554432 2356899999999999998888877543 367888999998876553 233
Q ss_pred h-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 588 K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 588 ~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
. ....|||||.- +.. -.++..+.+||.-.
T Consensus 389 ~~g~~~vLvaT~~-----~~~----GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 389 KKDESGILVCTDV-----GAR----GMDFPNVHEVLQIG 418 (563)
T ss_dssp HHCSSEEEEECGG-----GTS----SCCCTTCCEEEEES
T ss_pred hcCCCCEEEEcch-----hhc----CCCcccCCEEEEEC
Confidence 3 35799999952 222 15778888887543
No 254
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=78.53 E-value=11 Score=38.64 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=50.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++. ..+.. ...|+|||.- +. .-.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~----~Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA----RGLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT----CSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh----cCCCC
Confidence 45789999999988877776655 478899999998876654 33333 4689999942 22 22577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 78888774
No 255
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.44 E-value=1.4 Score=42.34 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=18.0
Q ss_pred HHHHcCCCEEEEcCCCChHHHH
Q 001261 499 PVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 499 ~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.++..+..+++.|++|+|||..
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3445678999999999999964
No 256
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.32 E-value=4.7 Score=41.62 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cc-cccCCCCCcc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VA-ARGLDVKELE 784 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~-~~GlDi~~v~ 784 (1112)
..++||.++++.-+..++..+... ++.+..++|+.+.......+ . ...+|||+|. .+ ...+++.++.
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 457999999999999999988874 77889999988765443332 2 3478999994 11 2356677888
Q ss_pred EEEE
Q 001261 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 257
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.57 E-value=32 Score=33.65 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +. .-.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~----~Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG----RGMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS----TTCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh----cCcch
Confidence 45799999999998887776655 478899999998776553 33333 4689999942 11 12567
Q ss_pred CCceEEEecc
Q 001261 616 RRVTYLVMDE 625 (1112)
Q Consensus 616 ~~i~~vViDE 625 (1112)
..+.+||.=.
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 7788887633
No 258
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.54 E-value=5.6 Score=39.89 Aligned_cols=72 Identities=13% Similarity=0.285 Sum_probs=43.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh-cCCeEEEeCchHHHHHHHhcCCcccc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK-RGTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.+.++||.|+++.-+..++..+.. .++.+..++|+.+..+. +..+. ....|+|+|.- +..+ .+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G----ld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----AARG----LD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-----hhcC----CC
Confidence 356799999999988877776655 47889999998765443 33333 35689999942 2211 46
Q ss_pred cCCceEEEe
Q 001261 615 LRRVTYLVM 623 (1112)
Q Consensus 615 l~~i~~vVi 623 (1112)
+..+.+||.
T Consensus 112 i~~~~~VI~ 120 (185)
T 2jgn_A 112 ISNVKHVIN 120 (185)
T ss_dssp CCSBSEEEE
T ss_pred cccCCEEEE
Confidence 777887775
No 259
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.07 E-value=3.2 Score=42.72 Aligned_cols=70 Identities=9% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc------cccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~------~~GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +. ..+|+|+|.-. ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999999988888764 6788999998876544332 22 27899999421 235566777
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77775
No 260
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.27 E-value=12 Score=44.72 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=55.9
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHh-cCCeEEEeCchHHHHHHHhcCCcccc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELK-RGTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.+.++||.|+|+.-|..++..+...+. .++.+..++|+.+..+.. ..+. ....|||||.- +.. -.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~~----GiD 356 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GAR----GMD 356 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GTS----SCC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hhc----CCC
Confidence 356899999999999998888877543 267888999998776553 3333 35789999952 222 157
Q ss_pred cCCceEEEeccc
Q 001261 615 LRRVTYLVMDEA 626 (1112)
Q Consensus 615 l~~i~~vViDEa 626 (1112)
+..+.+||.-..
T Consensus 357 ip~v~~VI~~~~ 368 (579)
T 3sqw_A 357 FPNVHEVLQIGV 368 (579)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEcCC
Confidence 788888885443
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.19 E-value=4.4 Score=41.76 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++|++|||||+.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668889999999997543
No 262
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.60 E-value=12 Score=39.67 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc--ccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~--~GlDi~~ 782 (1112)
..++||.++++.-+..++..|... ++.+..++|+......... +..+ .+|||+|. .+. .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999998888764 5678889999886554433 3344 88999993 222 2467888
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.49 E-value=2.8 Score=56.89 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.|+.++++|++|+|||+.++..+...+.. |..|+|+. .-++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEE-ccccHHHHH
Confidence 56789999999999998766666655432 56677775 344555554
No 264
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.43 E-value=3.1 Score=49.67 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..++++||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999743
No 265
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.41 E-value=7.2 Score=42.96 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
++-++++|++|+|||+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577789999999975443
No 266
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=74.62 E-value=3.7 Score=40.29 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=47.7
Q ss_pred EEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
..+|.|..- .+.+.+ ..+.++.+|++.|||.|.+- +.+ +.++..--.+.|.| +...|..|+..|..+|.+
T Consensus 3 ~~~~~Vp~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~----~~~--~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 3 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILI----QDG--SQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 73 (164)
T ss_dssp EEEEEECTT--CHHHHTCTTTHHHHHHHHTSCSEEEEC----CCT--TSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTC
T ss_pred EEEEEechh--heeEEECCChHHHHHHHHHhCCeEEEe----cCC--CCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 344555432 455554 45789999999999999772 111 11222233567889 789999999999998875
Q ss_pred H
Q 001261 1093 F 1093 (1112)
Q Consensus 1093 ~ 1093 (1112)
.
T Consensus 74 ~ 74 (164)
T 2jvz_A 74 R 74 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.55 E-value=1.5 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.5
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|.-++++||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677788999999999974
No 268
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.97 E-value=11 Score=43.25 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHhh--hcCCeEEEEeCCHHHHHHHHHHHHhc-CC---CeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 698 SDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKH-GY---PCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~-g~---~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
..|....+..+... ...+++||.||+..-+...+..|... ++ .+..+||+.....+..... ...|+|+|
T Consensus 34 ~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T 108 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVAT 108 (494)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEec
Confidence 44554444443333 24679999999999999999888875 55 8999999999887655443 36799999
Q ss_pred C-ccc-----ccCCCCCccEEEE
Q 001261 772 S-VAA-----RGLDVKELELVIN 788 (1112)
Q Consensus 772 ~-v~~-----~GlDi~~v~~VI~ 788 (1112)
. .+. ..+....+++||.
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 109 PQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HHHHHHHHHTTSCCTTSCSEEEE
T ss_pred HHHHHHHHhcCCcchhhceEEEE
Confidence 3 222 2466778888886
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.93 E-value=4.4 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.033 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-+.++|+.|||||+.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688899999999975443
No 270
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.87 E-value=3.3 Score=47.97 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=23.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+|+.|++|+|||..++-.+. ++..+ |..|+|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~-~~a~~-------g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHH-HHHHT-------TCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHH-HHHHc-------CCEEEEEE
Confidence 44577889999999965444444 43331 44677776
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.70 E-value=4.6 Score=44.97 Aligned_cols=45 Identities=11% Similarity=-0.059 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|.-+++.|++|+|||..++ .++..+... ....+.+..++++.-.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~-~la~~~~~~-~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSH-TLCVTAQLP-GAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHH-HHHHHTTSC-BTTTBCCCEEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHhcc-cccCCCCCeEEEEECC
Confidence 34567889999999997544 333332211 0111234567777643
No 272
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.49 E-value=3 Score=51.96 Aligned_cols=17 Identities=35% Similarity=0.243 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.+|++||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997543
No 273
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=73.39 E-value=4.1 Score=53.50 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
-||.|..|||||.+.+--+...+...+ .+..+|+|||.. +..++...+ ...++..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q-~TFt~~~rl---~~~l~~~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQ-MTFLMEYEL---AKTPDMG---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGG-GHHHHHHHH---TCCSSCS----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCc-ccHHHHHHH---HHhhhhc----------------
Confidence 378899999999887766666555421 346789999965 333322222 2212110
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
....|-|+|..+|...+....+ ...+.|+|+.+
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g------~~~~~ild~~~ 91 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG------GMSRPFLTSTG 91 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS------CTTSCEECHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC------CCcccCcCHHH
Confidence 0136888998888655543221 12345677766
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.00 E-value=3.7 Score=46.69 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.+.+++++|+||||||+..-. ++..+.. .+..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcCH
Confidence 567899999999999975443 3333322 25667787787654
No 275
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=72.74 E-value=4.7 Score=40.03 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
....|.|.. ..+...+= .+.++.+|++.|||.|.+-... .|.++...=.+.|.| +...|..|+..|..+|
T Consensus 104 ~~~~i~vp~--~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 104 QEFNFIVPT--GKTGLIIGKGGETIKSISQQSGARIELQRNP-----PPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CEEEEEEET--TTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-----TTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred EEEEEEECh--HHcCeeECCCchHHHHHHHHHCCEEEECCCC-----CCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 455666643 34555553 5789999999999999875431 122222223577889 8999999999998875
No 276
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.31 E-value=11 Score=42.57 Aligned_cols=72 Identities=13% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCcccc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 467899999999999887776665 478899999998866553 33333 468999994 33332 57
Q ss_pred cCCceEEEe
Q 001261 615 LRRVTYLVM 623 (1112)
Q Consensus 615 l~~i~~vVi 623 (1112)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 778888875
No 277
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.26 E-value=3.1 Score=48.07 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
...+++++|+||||||..+ .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 3468999999999999864 444444443 2456788889888753
No 278
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.08 E-value=9.7 Score=43.78 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=52.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCCcc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~v~ 784 (1112)
.++||.|+++.-+.+++..+... ++.+..++|+.+.......+ .....|||+|. .+.+ .+++..+.
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~ 205 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTR 205 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCC
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCC
Confidence 48999999999999998888764 57888999999876554433 23578999993 2223 35677888
Q ss_pred EEEE
Q 001261 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 206 ~lVl 209 (434)
T 2db3_A 206 FVVL 209 (434)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8885
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.10 E-value=6.1 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
|.-+++.|++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999975444333
No 280
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=70.30 E-value=7.4 Score=38.03 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=44.7
Q ss_pred cchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1025 NARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
.+...+- .+.++.+|++.|||.|.+-.. .+ +...=.+.|.|. ...|+.|+..|..+|.+.
T Consensus 101 ~~g~iIGk~G~~I~~i~~~tg~~I~i~~~------~~--~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 101 SVGVVIGRSGEMIKKIQNDAGVRIQFKQD------DG--TGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp THHHHHCSSSHHHHHHHHHTCCEEEECCC------CT--TSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCCcHhHHHHHHHHCCeEEEeCC------CC--CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 4555554 578999999999999987432 11 222345788897 889999999999998764
No 281
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=70.17 E-value=14 Score=40.23 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=50.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++.. .+.. ...|+|||.- +. .-.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~----~Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA----RGLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT----CSTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh----cCccc
Confidence 45789999999988776665544 5889999999988766543 3333 4689999942 22 22577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 88888874
No 282
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=70.12 E-value=8.8 Score=38.66 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhccCCcCeEEEEEecCC-C------ccchhhc--ccchhhhhHHhhhCCeEeccceee
Q 001261 984 GAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDF-P------QNARWKV--THKETLGPISEWTGAAITTRGQYF 1054 (1112)
Q Consensus 984 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~INd~-p------q~~R~~~--t~~~~~~~i~~~tg~~i~~kG~~~ 1054 (1112)
+...|..+.-++...-.......-..++.|...|+|+|| + .+.+-.| -++.|+..|...|||.|.+-|+
T Consensus 59 ~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-- 136 (191)
T 1tua_A 59 NLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY-- 136 (191)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS--
T ss_pred HHHHHHHHHHHHHcCCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC--
Confidence 445565555555442222111111124568888999998 3 2334444 3567999999999999999663
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1055 PPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1055 ~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
.++|-| +...|+.|..-|..+|.
T Consensus 137 -------------~v~i~G-~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 137 -------------EVAIIG-DYERAMAAKQAIEMLAE 159 (191)
T ss_dssp -------------EEEEEE-EHHHHHHHHHHHHHHHT
T ss_pred -------------EEEEEe-ChHHHHHHHHHHHHHHc
Confidence 588888 56667888888888875
No 283
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.05 E-value=10 Score=48.97 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=57.7
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CC----CeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCC-CCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----GY----PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLD-VKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g~----~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlD-i~~ 782 (1112)
.+.++||.+|++.-|.+++..|... ++ .+..+||+.+...+...+..+.+ .+|||+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3468999999999999988888753 56 78999999999888888888877 89999994 2222222 567
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.80 E-value=10 Score=47.51 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+..++++|++|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999974
No 285
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=69.72 E-value=10 Score=42.39 Aligned_cols=70 Identities=9% Similarity=0.157 Sum_probs=52.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.........+. ...|+|+|.- + ...+.+..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999999888887653 688999999998766555443 3679999932 1 124556778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 164 ~~vIi 168 (394)
T 1fuu_A 164 KMFIL 168 (394)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 286
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=69.57 E-value=7.6 Score=38.50 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=41.9
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
..+.++.+|++.|||.|.+-.. .+ +..--.+.|.|+ ...|.+|+..|..++.+.
T Consensus 20 kgG~~Ik~i~~~tg~~I~i~~~------~~--~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 20 RNGEMIKKIQNDAGVRIQFKPD------DG--TTPERIAQITGP-PDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp GGGHHHHHHHHHHCCEEEEECC------TT--SCSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhCCEEEEecC------CC--CCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 4578999999999999998531 11 222335678898 889999999999999875
No 287
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.49 E-value=13 Score=33.26 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=53.1
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHh-hhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISE-WTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~-~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
+...|.|.- ...|..+- ++.++.+|.+ ++++.| .||.+ +. .+-|+|+ ...|.+|+.+|..++
T Consensus 27 ~t~~i~vp~--~~h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~~------~~--~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 27 TVSSVAAPS--WLHRFIIGKKGQNLAKITQQMPKVHI-----EFTEG------ED--KITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp EEEEEECCS--TTHHHHHTTTTCHHHHHHHHCSSSEE-----EECSS------SC--EEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeCH--HHHhhhcCCCCccHHHHHHHcCCcEE-----EeCCC------CC--EEEEECC-HHHHHHHHHHHHHHH
Confidence 567777774 37888875 5689999999 578877 36651 22 6899999 888999999999999
Q ss_pred HHHHHHh
Q 001261 1091 EDFTNQA 1097 (1112)
Q Consensus 1091 ~e~~~~~ 1097 (1112)
++...+.
T Consensus 91 ~el~~~~ 97 (102)
T 2ctf_A 91 KDLINRS 97 (102)
T ss_dssp HHHHHHS
T ss_pred HHHHhhc
Confidence 8876654
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.43 E-value=3.8 Score=45.92 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+.-++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445688899999999974
No 289
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=69.27 E-value=18 Score=37.21 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=49.5
Q ss_pred CcCeEEEEEecCC--Cc------cchhhc--ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHH
Q 001261 1010 PEHYEAELEINDF--PQ------NARWKV--THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSV 1079 (1112)
Q Consensus 1010 ~~~~~~~~~INd~--pq------~~R~~~--t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v 1079 (1112)
++.|..-|+|.++ +- .++-.| -.+.|+..|++.|||.|.+-| . .++|-| +...|
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------------~--~v~i~G-~~~~i 178 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG-------------K--TVAIIG-NPIQI 178 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-------------T--EEEEEE-CHHHH
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-------------e--EEEEEe-CHHHH
Confidence 3467777888887 42 233333 357899999999999999954 1 288888 56677
Q ss_pred HHHHHHHHHHHHH
Q 001261 1080 KRAKAELKRVLED 1092 (1112)
Q Consensus 1080 ~~A~~~i~~~~~e 1092 (1112)
+.|...|..+|..
T Consensus 179 ~~A~~~i~~li~g 191 (219)
T 2e3u_A 179 EIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999854
No 290
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.10 E-value=12 Score=44.21 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~ 782 (1112)
.+++||.||++.-+..++..|... ++.+..+||+.+...+...+. ....|||+|. .+..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999998888887764 899999999997655433222 1367999993 22222 4 6778
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888886
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.00 E-value=6.1 Score=49.08 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999974
No 292
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.67 E-value=4.4 Score=47.77 Aligned_cols=37 Identities=24% Similarity=0.061 Sum_probs=24.4
Q ss_pred HHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHH
Q 001261 482 IRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~ 520 (1112)
|..+|. +++.+...+.. +..|..++++|+||||||+.
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344552 23444444443 45788899999999999974
No 293
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.39 E-value=8.1 Score=45.62 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~ 782 (1112)
.+++||+||++.-+..++..|... ++.+..+||+.+...+...+. +...|||+|. .+..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888888777765 899999999996554432221 1378999993 22222 3 5667
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888886
No 294
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.73 E-value=4.8 Score=41.34 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLD 779 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~--------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlD 779 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+..... ..+ .....|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999988877654 67888899988643321 111 23578999994 2222 356
Q ss_pred CCCccEEEE
Q 001261 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777775
No 295
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.63 E-value=4.7 Score=42.15 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=48.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc---cCCCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR---GLDVKE 782 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~---GlDi~~ 782 (1112)
.++||.++++.-+..++..+... ++.+..++|+..... .......+...|||+|. .+.. ++++.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 37999999999999999888775 677777776532211 11122355678999993 2222 477888
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 176 ~~~lVi 181 (245)
T 3dkp_A 176 VEWLVV 181 (245)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888885
No 296
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=66.41 E-value=13 Score=46.37 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cccc-C-CCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~G-l-Di~~ 782 (1112)
.+++||+||++.-+..++..|... ++.+..+||+.+...+...+. +...|||+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 578999999999998888877765 899999999997655433221 24789999932 2222 3 5667
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=66.40 E-value=4.7 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-+.-|..++..+..|.-+.++|+.|||||+.+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34556778888888999999999999999743
No 298
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.81 E-value=23 Score=43.06 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..|..+...+.. .|+.+.+++|+.+..+.... +.. ...|+|||.- +.. -+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~~----GlDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LRE----GLDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----CST----TCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----hhC----Cccc
Confidence 56899999999988877666655 57888888988776555333 333 4789999952 221 1578
Q ss_pred CCceEEEeccchhh
Q 001261 616 RRVTYLVMDEADRM 629 (1112)
Q Consensus 616 ~~i~~vViDEah~~ 629 (1112)
..+++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 88999999998863
No 299
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.78 E-value=6.7 Score=36.57 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcC-CeEEEEe-CCHHHHHHHHHHHHhcCCCeeeecCCCCH
Q 001261 703 RLLELLGEWYEK-GKILIFV-HSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 703 ~ll~~l~~~~~~-~~vLIF~-~s~~~~~~l~~~L~~~g~~~~~ihg~~~~ 750 (1112)
.+...+...... .++|||| .+-..+..++..|...|+++..|.||+..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444444445 6899999 57777888999999999999999999864
No 300
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=65.53 E-value=57 Score=39.62 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..|..+...+.. .|+.+.+++|+.+..+... .+.. ..+|+|||.- +.. -+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~~----GlDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LRE----GLDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CCT----TCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hhc----CccC
Confidence 56899999999988877666655 5788888898877665533 3443 4689999942 211 1577
Q ss_pred CCceEEEeccchh
Q 001261 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
..+++||+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 8899999888875
No 301
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.90 E-value=6.6 Score=43.01 Aligned_cols=41 Identities=12% Similarity=-0.097 Sum_probs=26.5
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
-+++.|+.|+|||...+..+...... +.+..|+++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH------CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeccchh
Confidence 47888999999997655444443321 125578888765544
No 302
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=64.17 E-value=30 Score=38.68 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+......... ..+...|+|+|. .+. ..+++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999999888888764 6789999999886543322 245678999993 222 34667888
Q ss_pred cEEEEe
Q 001261 784 ELVINF 789 (1112)
Q Consensus 784 ~~VI~~ 789 (1112)
.+||.-
T Consensus 165 ~~vIiD 170 (400)
T 1s2m_A 165 SLFIMD 170 (400)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 888853
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.09 E-value=5.7 Score=53.28 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
|+-+.+.||.|||||+.++..+... .. .|..|+++.+-.+|...
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~-~~-------~g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA-QR-------EGKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HH-------TTCCEEEECTTSCCCHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEecCCCCCHH
Confidence 4678899999999998655444333 32 36678888886666543
No 304
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=63.87 E-value=9 Score=38.06 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=48.7
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccc--eeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRG--QYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG--~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~ 1088 (1112)
.|...|.|..- .+...+ ..+.++.+|++.|||.|.+-. -++ |...++ .+.|.|. ...|.+|+..|.+
T Consensus 5 ~~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----~~~~er--~v~I~G~-~~~v~~A~~~I~~ 74 (178)
T 2anr_A 5 QYFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----PGTTER--VCLIQGT-IEALNAVHGFIAE 74 (178)
T ss_dssp CEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----TTSSEE--EEEEEEC-HHHHHHHHHHHHH
T ss_pred CEEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----CCCCCc--eEEEEeC-HHHHHHHHHHHHH
Confidence 45556666542 455555 356899999999999998732 222 222334 4678896 7889999999988
Q ss_pred HHHH
Q 001261 1089 VLED 1092 (1112)
Q Consensus 1089 ~~~e 1092 (1112)
++.+
T Consensus 75 ~~~~ 78 (178)
T 2anr_A 75 KIRE 78 (178)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8765
No 305
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=63.73 E-value=7.7 Score=38.60 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=48.9
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+...|.|.. ..+...+ ..+.++.+|++.|||.|.+-..- ..|...+ =.+.|.|.. .+|..|+..|..+|.
T Consensus 104 ~~~~i~Vp~--~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~----~~~~~~~--~~v~I~G~~-~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 104 NQVKIIVPN--STAGLIIGKGGATVKAIMEQSGAWVQLSQKP----DGINLQN--RVVTVSGEP-EQNRKAVELIIQKIQ 174 (178)
T ss_dssp GEEEEEEEH--HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------CCE--EEEEEESSH-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEch--hheeeeECCCcHHHHHHHHHHCCEEEEeCCC----CCCCCCc--eEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 455666654 2566666 46789999999999999874311 1122223 356788876 799999999999987
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
+
T Consensus 175 e 175 (178)
T 2anr_A 175 E 175 (178)
T ss_dssp S
T ss_pred h
Confidence 5
No 306
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=63.59 E-value=5.8 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCH
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~ 750 (1112)
...+.......+++|||.+-..+...+..|...|+++..+.||+..
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 3344444345689999999888999999999999999999998753
No 307
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.18 E-value=19 Score=40.60 Aligned_cols=73 Identities=12% Similarity=0.295 Sum_probs=54.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~ 782 (1112)
...++||.|+++.-+..++..+... ++.+..++|+...... +..+..+...|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3568999999999999988888764 6788888888875443 3455567789999993 222 3356777
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888875
No 308
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=63.00 E-value=1.7e+02 Score=31.61 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
.....|||.+-..+..+...|...|+.
T Consensus 204 ~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 204 PKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 357889999999999999999998865
No 309
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=62.92 E-value=12 Score=36.45 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred EEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
...|.|..- .+...+ ..+.++.+|++.|||.|.+-.. +.+.-.+.|.|+ ...|..|+..|..+|.+
T Consensus 6 ~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~----------~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e 72 (160)
T 2jzx_A 6 TIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (160)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC----------TTTEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC----------CCCceEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 344444332 344444 4578999999999999998431 223346778897 88999999999999988
Q ss_pred HH
Q 001261 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
..
T Consensus 73 ~~ 74 (160)
T 2jzx_A 73 DI 74 (160)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.80 E-value=3.7 Score=40.89 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|+-++++||+|||||+.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999743
No 311
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.59 E-value=29 Score=40.85 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=24.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|.-+++.|++|+|||+.+... +..+.. .|..++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l-~g~~~~-------~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRF-VENACA-------NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHH-HHHHHT-------TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHH-HHHHHh-------CCCCEEEEEEe
Confidence 4567888999999999754433 222221 24456676654
No 312
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=62.50 E-value=42 Score=36.67 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
..++||.|++..-+..++..+... ++.+..++|+.........+. ..+|+|+|.- + ...+++..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccC
Confidence 458999999999999988888763 678899999988765544432 4789999942 1 123567778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 149 ~~iIi 153 (367)
T 1hv8_A 149 KYFIL 153 (367)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 313
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=61.95 E-value=12 Score=42.24 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++.-|..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||.- +.. -.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gidi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CAR----GIDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTS----SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----ccc----CCCc
Confidence 45799999999999888777765 477888999998876553 33333 4689999952 222 2578
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 88888884
No 314
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=61.13 E-value=16 Score=45.13 Aligned_cols=80 Identities=5% Similarity=-0.081 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV----- 773 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v----- 773 (1112)
.++-++.....+.+++|.|+|..-|.+.+..+.. .|+.+.++.|+++...+.... .+.|+|+|+-
T Consensus 104 f~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fD 177 (853)
T 2fsf_A 104 ATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFD 177 (853)
T ss_dssp HHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHH
Confidence 3344443334456899999999988777766644 489999999999986554432 3789999952
Q ss_pred -cccc-------CCCCCccEEEE
Q 001261 774 -AARG-------LDVKELELVIN 788 (1112)
Q Consensus 774 -~~~G-------lDi~~v~~VI~ 788 (1112)
+..+ +...++.++|.
T Consensus 178 yLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 178 YLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHhhhhccHhHhcccCCcEEEE
Confidence 1222 45577887774
No 315
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.71 E-value=5 Score=45.05 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.3
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|..++++|+||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999973
No 316
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=60.68 E-value=42 Score=37.60 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=53.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
...++||.|+++.-+..++..|... ++.+..++|+.........+. ....|+|+|. .+.. .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3568999999999999998888764 578889999998766544332 2458999993 2333 466777
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888885
No 317
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.91 E-value=10 Score=41.27 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=47.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc--ccCCCCCc
Q 001261 716 KILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA--RGLDVKEL 783 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~--~GlDi~~v 783 (1112)
++||.|+++.-|..++..+... ++.+..++|+...... .....+|||||.- +. ..+++.++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 7999999999999988887764 4677778877653221 1345689999942 21 35778889
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 237 ~~lVl 241 (300)
T 3fmo_B 237 KVFVL 241 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 99885
No 318
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.64 E-value=5.1 Score=40.65 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|+-++++||+|+|||+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999743
No 319
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.13 E-value=34 Score=36.98 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-----c-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA-----A-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~-----~-~GlDi~~v 783 (1112)
..++||.||++.-+..++..|... ++.+..+||+.+....... +. ...|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 578999999999999999888753 5789999999987654433 22 37899999421 1 23456677
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77775
No 320
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.03 E-value=13 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+|+.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999753
No 321
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.71 E-value=5.8 Score=42.09 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=16.3
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999964
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=58.61 E-value=7.1 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
|.-++++||||||||+. +..++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 44578899999999974 33344443
No 323
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.49 E-value=10 Score=38.24 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=34.7
Q ss_pred CCeEEEEeCCHHHHHH-HHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 714 KGKILIFVHSQEKCDA-LFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~-l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
.+++||+|++..-+.. +...+.. .++.+..++|+.....+...+. +...|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988877 5555544 3678999999765432221111 1467999883
No 324
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=58.27 E-value=4 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+.-++++|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.22 E-value=5.3 Score=40.43 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.++.++++|++|||||+..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56778999999999998543
No 326
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=57.99 E-value=16 Score=35.50 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=44.4
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
+...+ ..+.++.+|++.|||.|.+--.. . ++..--.+.|.| +...|..|...|..+|.+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-----~--~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPE-----T--PDSKVRMVIITG-PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCS-----S--TTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCC-----C--CCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Confidence 44444 35789999999999999874321 1 233444678889 7899999999999988765
No 327
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.63 E-value=5.1 Score=44.31 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++|+||||||||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357888999999997544
No 328
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.55 E-value=11 Score=44.23 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
+-..++..+..+..+|++||+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3345566677889999999999999974
No 329
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=57.41 E-value=20 Score=40.10 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-+.++|++|||||+.+-
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4457788999999997543
No 330
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.22 E-value=24 Score=43.74 Aligned_cols=79 Identities=6% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cc----
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VA---- 774 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~---- 774 (1112)
++-++.....+..++|.|+|..-|.+.+..+.. .|+.+.++.|+++...+.... .++|+|+|+ -+
T Consensus 114 ~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~ 187 (844)
T 1tf5_A 114 TLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDY 187 (844)
T ss_dssp HHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHH
Confidence 333333334456899999999988877766644 489999999999987665432 378999995 11
Q ss_pred -c-------ccCCCCCccEEEE
Q 001261 775 -A-------RGLDVKELELVIN 788 (1112)
Q Consensus 775 -~-------~GlDi~~v~~VI~ 788 (1112)
. ..+....+.++|.
T Consensus 188 L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 188 LRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp HHHTTCSSGGGCCCCCCCEEEE
T ss_pred HHHhhhcchhhhcccCCCEEEE
Confidence 1 2366677888774
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.95 E-value=4.1 Score=40.36 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.3
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
+.+..++++|++|||||++.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998544
No 332
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.67 E-value=5.8 Score=40.53 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566888899999999753
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=56.64 E-value=21 Score=44.26 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh-------cCceEEEEeCCCChHHHHHHHh---------cCCeEEEeCchHHHH
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------MGVRCVPVYGGSGVAQQISELK---------RGTEIVVCTPGRMID 603 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~-------~~i~~~~~~gg~~~~~~~~~l~---------~~~~IvV~Tp~~L~~ 603 (1112)
+..+||.||++.-+..++..+...+.. .++.+..++|+.+..++...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 457999999999999988888764322 4788999999998877754432 2358999994
Q ss_pred HHHhcCCcccccCCceEEEe
Q 001261 604 ILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 604 ~l~~~~~~~~~l~~i~~vVi 623 (1112)
.+..+ .++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 33332 57778887774
No 334
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.49 E-value=1.8e+02 Score=30.27 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=85.5
Q ss_pred CcEEEEccc--hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH----hcCCeEEEeCch---HH---HHHHHhc
Q 001261 541 PVGLIMAPT--RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL----KRGTEIVVCTPG---RM---IDILCTS 608 (1112)
Q Consensus 541 ~~~LIl~Pt--reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IvV~Tp~---~L---~~~l~~~ 608 (1112)
..+.|++|. .....++...+...+...|+.+..+..+.....+...+ ..+++-||..|. .. +..+...
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ 85 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDA 85 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC
Confidence 345555663 22344566667777777788877776655544433222 234554443322 12 2222221
Q ss_pred CCccccc-----CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH-----HHHHHHHhcCCC-eEEE
Q 001261 609 GGKITNL-----RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ-----VEILARKVLNKP-VEIQ 677 (1112)
Q Consensus 609 ~~~~~~l-----~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~-----~~~l~~~~~~~p-~~i~ 677 (1112)
+..+..+ ..+.+|.+|...-. ......++..+...+.+.+++...... ..-+...+-..+ +.+
T Consensus 86 ~iPvV~~~~~~~~~~~~V~~D~~~~g-----~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~- 159 (291)
T 3l49_A 86 GIPLFTVDTATPHAINNTTSNNYSIG-----AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKI- 159 (291)
T ss_dssp TCCEEEESCCCTTCSEEEEECHHHHH-----HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEE-
T ss_pred CCcEEEecCCCCCcCceEecChHHHH-----HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE-
Confidence 1111111 12344444444421 223344555445667788886543221 122222222232 211
Q ss_pred EcCcccccCCccEEEEec--ccchhHHHHHHHHHhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001261 678 VGGRSVVNKDITQLVEVR--PESDRFLRLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 678 i~~~~~~~~~i~q~~~~~--~~~~k~~~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~g~ 739 (1112)
+... .+... ....-...+..+|.. .+ .....|||.+-..+..+...|...|+
T Consensus 160 ~~~~---------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 160 IEPE---------LRDVIPNTIQSAYSNVTDMLTK-YPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp CSSC---------BCCCSSSHHHHHHHHHHHHHHH-CCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred Eeee---------ccCCCCCCHHHHHHHHHHHHHh-CCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 0000 00011 111222333444443 22 15678899999999999999998887
No 335
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.43 E-value=4.9 Score=43.95 Aligned_cols=18 Identities=33% Similarity=0.189 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++|+||||||||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346778999999997544
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.38 E-value=5.5 Score=40.26 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=16.4
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~ 521 (1112)
+..|.-++++|++|||||+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345777889999999999753
No 337
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.36 E-value=7.1 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 497 ALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
++..+..+..+++.|++|+|||..+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3444556889999999999999643
No 338
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.21 E-value=15 Score=38.61 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=27.7
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 466 IKTWHQTGLTSKIMETIRKLN--YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~--~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-.+|.++.-...+.+.|...- +..|..++... +...+.++++|++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 357888776666665544210 00000000000 012356999999999999743
No 339
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=60.67 E-value=2.4 Score=41.84 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDI 96 (170)
Confidence 45789999999988877776655 377888888887655433 23332 357999993 22211 466
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||+
T Consensus 97 ~~~~~Vi~ 104 (170)
T 2yjt_D 97 PDVSHVFN 104 (170)
Confidence 66777665
No 340
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.75 E-value=5.6 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-+.++||+|||||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677888999999999743
No 341
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=55.73 E-value=5 Score=40.81 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|+-++++|+||+|||..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35668999999999996543
No 342
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.67 E-value=4.9 Score=39.97 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|++|||||++.-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35668899999999998533
No 343
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=55.53 E-value=52 Score=36.37 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++.-|..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gidi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----LAR----GIDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----GSS----SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----hhc----CCCc
Confidence 56899999999998887776665 477888999998766543 33443 4689999952 221 2678
Q ss_pred CCceEEEeccch
Q 001261 616 RRVTYLVMDEAD 627 (1112)
Q Consensus 616 ~~i~~vViDEah 627 (1112)
..+.+||.-...
T Consensus 310 p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 PTVSMVVNYDLP 321 (395)
T ss_dssp TTEEEEEESSCC
T ss_pred ccCCEEEEcCCC
Confidence 889998875544
No 344
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=55.37 E-value=19 Score=38.35 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCCCChHHHH-HHHHHHHcCC-----CEEEEcCCCChHHHHHH
Q 001261 477 KIMETIRKLNYEKPMPIQA-QALPVIMSGR-----DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~-~ai~~il~g~-----dvii~a~TGsGKT~~~l 522 (1112)
.+.+.|+..||. |++. .++-.++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 567778878876 5553 3355556554 48889999999997554
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.36 E-value=6 Score=40.25 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~ 521 (1112)
+.|+-++++||+|+|||+.+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46778899999999999753
No 346
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=55.18 E-value=16 Score=44.76 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=50.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCCc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~v 783 (1112)
+++||+++++.-+......|... ++.+..+||+.+...+...+ . ...+|||+|. .+..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888888765 78999999998643322222 1 2478999993 22233 3 56778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88886
No 347
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=54.68 E-value=6.2 Score=43.66 Aligned_cols=19 Identities=47% Similarity=0.622 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCChHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~ 519 (1112)
+..|..++++|+||||||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478899999999999997
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=54.64 E-value=6.6 Score=38.95 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
++.++++|++|||||++.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999998544
No 349
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.45 E-value=5.2 Score=38.89 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998543
No 350
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.65 E-value=6.5 Score=42.91 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36778999999997543
No 351
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=53.59 E-value=34 Score=42.64 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=49.1
Q ss_pred cchhHH-HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~-~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
.+.|.. .++-++.....+.+++|.++|..-|.+.+..+.. .|+.|.++.|+++...+.... .++|+|+|
T Consensus 102 GeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGT 175 (997)
T 2ipc_A 102 GEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVT 175 (997)
T ss_dssp THHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEE
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEEC
Confidence 344433 3333433344556899999999888777666544 599999999999977666543 37899999
Q ss_pred C
Q 001261 772 S 772 (1112)
Q Consensus 772 ~ 772 (1112)
+
T Consensus 176 p 176 (997)
T 2ipc_A 176 N 176 (997)
T ss_dssp H
T ss_pred c
Confidence 4
No 352
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.31 E-value=14 Score=48.03 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=51.8
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----CcccccC-CCCCccE
Q 001261 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARGL-DVKELEL 785 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~Gl-Di~~v~~ 785 (1112)
..++++||.+|++.-+...+..|......+..++|+++ .++...|||+| +.+..+- .+.++.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 34678999999999999999999887668999999987 35678999999 3444443 3567788
Q ss_pred EEE
Q 001261 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
||.
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.01 E-value=8.1 Score=39.79 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=16.0
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..|.-+.++||+|||||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999974
No 354
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.85 E-value=15 Score=32.11 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=47.6
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCe-EeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAA-ITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~-i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
.|...|.|+- ...+-.+- .+.++.+|.+.|||. |.+-- ++. .+.|.|++.+++++|+..|+.+
T Consensus 14 ~~i~~i~I~~--dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------ddG--~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 14 AFHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------DTG--TFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SEEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------TTT--EEEEEESSHHHHHHHHHHHSCC
T ss_pred ceEEEEEECh--HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------CCC--EEEEEECCHHHHHHHHHHHHhh
Confidence 4777888773 35665554 678999999999997 98831 112 4678899999999999988654
No 355
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.63 E-value=14 Score=37.66 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHH
Q 001261 477 KIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|.+.|+-.++ .+... ...+..++.+ +.+|+.||.|+|||..+ +.++..
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 45555554443 33333 4445555554 24888999999999643 444444
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=52.43 E-value=7 Score=41.36 Aligned_cols=16 Identities=31% Similarity=0.146 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++++|+||||||+.+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6788999999997533
No 357
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=52.18 E-value=8.4 Score=43.04 Aligned_cols=27 Identities=22% Similarity=0.419 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDCI--GVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~l 522 (1112)
..+..++.|.++. ..|.||||||..++
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 3567778898754 45899999997643
No 358
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.87 E-value=24 Score=44.99 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cccc-C-CCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~G-l-Di~~ 782 (1112)
.+++||.||++.-+..++..|... ++.+..+||+.+...+...+. +..+|||+|.- +..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999999988888877764 899999999987654322221 13679999931 2222 3 5666
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788885
No 359
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=51.72 E-value=8.6 Score=38.35 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.6
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+-++++||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999974
No 360
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.29 E-value=15 Score=38.17 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.++.|+|||..++.-+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 477889999999987665555443
No 361
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=51.25 E-value=4.4 Score=42.73 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=29.5
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~ 520 (1112)
.|-.+|.++.....+...+..+-.. . -...++..+- -.+.++++||+|+|||+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3456788887666665555432110 0 0011122111 123489999999999964
No 362
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=50.77 E-value=9.6 Score=41.97 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||.+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 345567788874 445899999998643
No 363
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.65 E-value=11 Score=42.92 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=20.2
Q ss_pred HHHHHHcCCCEE--EEcCCCChHHHHHH
Q 001261 497 ALPVIMSGRDCI--GVAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dvi--i~a~TGsGKT~~~l 522 (1112)
.+..++.|.++. ..|.||||||.+++
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 677788998854 45899999998753
No 364
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=50.61 E-value=32 Score=42.83 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=54.7
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c----
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A---- 774 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~---- 774 (1112)
++-++.....+..++|.|+|..-|.+.+..+.. .|+.|.++.|+++...+.... .++|+++|+- +
T Consensus 142 ~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDy 215 (922)
T 1nkt_A 142 VLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDY 215 (922)
T ss_dssp HHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHH
Confidence 333433334456899999999888776666544 599999999999987665443 3789999951 1
Q ss_pred -cc-------cCCCCCccEEEE
Q 001261 775 -AR-------GLDVKELELVIN 788 (1112)
Q Consensus 775 -~~-------GlDi~~v~~VI~ 788 (1112)
.. .+...++.++|.
T Consensus 216 LrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 216 LRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp HHHTTCSSGGGCCCCCCCEEEE
T ss_pred HHhhhhccHhhhccCCCCEEEE
Confidence 11 356667777774
No 365
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.38 E-value=9.4 Score=37.24 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..++++|+.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467889999999999743
No 366
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.16 E-value=5.9 Score=39.03 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++|++|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567889999999997544
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=50.11 E-value=6.8 Score=44.16 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.8
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..|.-++++|+||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 368
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.99 E-value=9.6 Score=38.60 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~ 521 (1112)
+..|+-++++|++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999743
No 369
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.96 E-value=2.5e+02 Score=29.41 Aligned_cols=27 Identities=7% Similarity=-0.102 Sum_probs=23.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
.....|||.+-..+..+...|...|+.
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 186 PNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred CCceEEEECCCcchhhHHHHHHhcCCC
Confidence 457899999999999999999988763
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.85 E-value=3.2 Score=44.68 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=25.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--HcCCCEEEEcCCCChHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QALPVI--MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~-~ai~~i--l~g~dvii~a~TGsGKT~~ 520 (1112)
|-.+|.+.+....+.+.|...=. .|+.. .++..+ .-.+.++++||.|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888776666666553110 11111 112111 1123499999999999974
No 371
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.78 E-value=9.1 Score=41.75 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5678999999999999743
No 372
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=49.74 E-value=7.1 Score=38.85 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-++++|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566788899999999974
No 373
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.61 E-value=16 Score=42.85 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+.+++|.|.||||||.+.-.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 357899999999999975433
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.53 E-value=11 Score=39.98 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHcCCCEEEEcCCCChHHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.|..++++|++|||||+++-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3458999999999999998543
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.46 E-value=7.3 Score=38.80 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 376
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.26 E-value=6.6 Score=38.90 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|..++++|+.|||||++.-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45568889999999998544
No 377
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.12 E-value=10 Score=43.00 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||.++.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 345667788774 445899999998754
No 378
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=48.93 E-value=11 Score=41.92 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..|..++.|.++ +..|.||||||..+
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 345566788874 44589999999864
No 379
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=48.93 E-value=13 Score=33.22 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCH
Q 001261 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQ 750 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~ 750 (1112)
+.......+++|||.+-..+..++..|...|+. +..+.||+..
T Consensus 52 ~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 52 MRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 333334568999999988889999999999995 8889998754
No 380
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.87 E-value=9.3 Score=38.84 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHcCCCEEEEcCCCChHHHH
Q 001261 500 VIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~ 520 (1112)
.+..|.-+.++||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566788889999999999974
No 381
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=48.83 E-value=11 Score=41.69 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|+||||||..+
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356677888874 44589999999764
No 382
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=48.54 E-value=11 Score=41.99 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|.||||||..+
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345566788874 44589999999764
No 383
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=48.53 E-value=8.2 Score=38.84 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 384
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=48.50 E-value=8.6 Score=42.26 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997543
No 385
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.44 E-value=7.5 Score=37.80 Aligned_cols=17 Identities=12% Similarity=-0.257 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998544
No 386
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.43 E-value=10 Score=42.45 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
..+..++.|.++. ..|.||||||..+
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455677888754 4589999999764
No 387
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=48.34 E-value=1.2e+02 Score=33.29 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|.+|+|||+.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47778999999997544
No 388
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=48.32 E-value=11 Score=42.08 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|+||||||..+
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 345667788874 44589999999764
No 389
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=48.03 E-value=11 Score=42.17 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
..+..++.|.++. ..|.||||||.++
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4566778888754 4589999999764
No 390
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=47.88 E-value=11 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
.+..++.|.++ +..|.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 45566788874 44589999999764
No 391
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=47.85 E-value=81 Score=30.80 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=57.5
Q ss_pred ccchhHHHHHHHHHhh-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 696 PESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
+..+-...+...|... ...+.+.|.|.+...+..+...|...|+++..+.++.. .| ...|.|.|--.
T Consensus 42 ~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~ 109 (174)
T 3dmn_A 42 NFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFL 109 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccc
Confidence 3344445555555431 12468999999999999999999999999887776442 12 24699999999
Q ss_pred cccCCCCCccEEEEeCCC
Q 001261 775 ARGLDVKELELVINFDAP 792 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p 792 (1112)
+.|+-+ +.||.+++.
T Consensus 110 ~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 110 AKGLEF---DAVIVWNAN 124 (174)
T ss_dssp CTTCCE---EEEEEETCB
T ss_pred cCCcCC---CEEEEecCC
Confidence 999876 556665553
No 392
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=47.80 E-value=11 Score=42.18 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|.||||||..+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345667788874 44589999999764
No 393
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=47.73 E-value=12 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|.||||||.++
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 345567788874 44589999999864
No 394
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=47.72 E-value=11 Score=49.91 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.++||||+=.-+|..-...+...+..+..++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999998888777777777777665555444443
No 395
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=47.57 E-value=7.9 Score=37.95 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 001261 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-++++|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999854
No 396
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=47.35 E-value=11 Score=42.02 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|.||||||..+
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 355667788875 44589999999864
No 397
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=47.26 E-value=1.2e+02 Score=30.57 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=13.2
Q ss_pred EEEcCCCChHHHHHHHHHH
Q 001261 508 IGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l 526 (1112)
|+.+.-|+|||+..+..+.
T Consensus 5 v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHH
Confidence 4457899999986554443
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=47.26 E-value=17 Score=40.66 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=24.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|+.|+|||+.++..+. .+... +..|+++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~-~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA-AAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHC-------CCeEEEEeC
Confidence 356688899999999975544443 33321 345777764
No 399
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=47.15 E-value=6.9 Score=38.41 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++++|+.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568889999999997543
No 400
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=47.05 E-value=10 Score=42.43 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||..++
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 345667788874 445899999997643
No 401
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=47.05 E-value=14 Score=42.69 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
++.+|+.||+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999997543
No 402
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=46.82 E-value=5.9 Score=42.46 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=29.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHH--cCCCEEEEcCCCChHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVIM--SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ-~~ai~~il--~g~dvii~a~TGsGKT~~ 520 (1112)
|-.+|.++.....+...+..+-. .+. ...+..+- -.+.++++||+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 45678888777766665554211 000 11121111 123489999999999974
No 403
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=46.60 E-value=11 Score=42.36 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||..++
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 445567788874 445899999997643
No 404
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=46.51 E-value=11 Score=41.95 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
.+..++.|.++ +..|.||||||..+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45667788874 44589999999864
No 405
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=46.48 E-value=13 Score=41.18 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
.+..++.|.++ +..|+||||||..+
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 45567788875 44589999999764
No 406
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=46.09 E-value=38 Score=44.30 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=44.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCC----CCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+|.|.-|||||.+...-++..|...... ..-.-..+|+|+=|+..|..+...|...+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999998888888887642100 001124799999999999998888876543
No 407
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=45.99 E-value=9.8 Score=42.67 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=19.1
Q ss_pred HHHHHHcCCCEE--EEcCCCChHHHHH
Q 001261 497 ALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
.+..++.|.++. ..|.||||||.++
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 566778888744 4589999999764
No 408
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=45.98 E-value=9.3 Score=35.40 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHhhhcCCeEEEEeCCHHH--HHHHHHHHHhcCCCeeeecCCCCH
Q 001261 706 ELLGEWYEKGKILIFVHSQEK--CDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~--~~~l~~~L~~~g~~~~~ihg~~~~ 750 (1112)
..+.......++||||.+-.. +..++..|...|+.+..|.||+..
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 344443345689999998766 788999999999998899998753
No 409
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=45.88 E-value=3.4e+02 Score=29.83 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=46.8
Q ss_pred CcEEEEccc-h---hHHHHHHHHHHHHhhhcC--ceEEEEeCCCChH---HHHHH-HhcCCeEEEeCchHHHHHHHhcCC
Q 001261 541 PVGLIMAPT-R---ELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVA---QQISE-LKRGTEIVVCTPGRMIDILCTSGG 610 (1112)
Q Consensus 541 ~~~LIl~Pt-r---eLa~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~---~~~~~-l~~~~~IvV~Tp~~L~~~l~~~~~ 610 (1112)
.++-+|+|. . ..-..++.-+.++.+.+| +.+..+....... ..+.. ...++++||++...+.+.+..-.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA- 105 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVA- 105 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHH-
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH-
Confidence 345555563 2 344556677778888888 7766554433221 22332 34689999998766655553321
Q ss_pred cccccCCceEEEecc
Q 001261 611 KITNLRRVTYLVMDE 625 (1112)
Q Consensus 611 ~~~~l~~i~~vViDE 625 (1112)
..+.++.++++|-
T Consensus 106 --~~~Pdv~fv~id~ 118 (356)
T 3s99_A 106 --KKFPDVKFEHATG 118 (356)
T ss_dssp --TTCTTSEEEEESC
T ss_pred --HHCCCCEEEEEec
Confidence 1234567777774
No 410
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=45.83 E-value=10 Score=42.23 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||..++
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 366777888875 445899999998754
No 411
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=45.83 E-value=19 Score=35.45 Aligned_cols=24 Identities=21% Similarity=-0.018 Sum_probs=16.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
-++++|+.|||||+. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 366789999999964 334444443
No 412
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.82 E-value=10 Score=41.98 Aligned_cols=17 Identities=35% Similarity=0.210 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++|+|+||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999997543
No 413
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.82 E-value=7.5 Score=38.65 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|++|||||+++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457889999999998644
No 414
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=45.74 E-value=19 Score=47.65 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=27.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.+||||||=.-+|..-...+...+.....++-+|+.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45567899999987777666666777776666665444443
No 415
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=45.61 E-value=2.8e+02 Score=28.75 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=22.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~ 739 (1112)
.....|||.+-..+..+...|...|+
T Consensus 194 ~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 194 IPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCchHHHHHHHHHHhCCC
Confidence 34678999999999999999998887
No 416
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=45.49 E-value=11 Score=37.96 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++|+.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667888999999999753
No 417
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=45.12 E-value=10 Score=33.46 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=32.6
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999999865
No 418
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=45.02 E-value=42 Score=34.78 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
...|....+.++... ..++||+|++..-+..+...|...++. +..++|+.. ....|+|+|
T Consensus 118 G~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp STTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 345555555444442 579999999999999999998888888 888888764 256788888
No 419
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.92 E-value=13 Score=42.30 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..|..++.|.++ +..|.||||||.++
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 356777888875 44589999999764
No 420
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=44.89 E-value=31 Score=40.30 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC----CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-cccc--CCCCCccEE
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-AARG--LDVKELELV 786 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g----~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~~~G--lDi~~v~~V 786 (1112)
.+++||.||+..-+...+..|...+ ..+..+||+.+...+ ..+...|+|+|.- +... ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 4599999999999999999998752 367889998876543 3577899999942 2222 345667777
Q ss_pred EEeCC
Q 001261 787 INFDA 791 (1112)
Q Consensus 787 I~~d~ 791 (1112)
|.=.+
T Consensus 230 IiDE~ 234 (510)
T 2oca_A 230 MNDEC 234 (510)
T ss_dssp EEETG
T ss_pred EEECC
Confidence 76433
No 421
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=44.86 E-value=11 Score=42.07 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=19.3
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 497 ALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
.+..++.|.++ +..|.||||||..++
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 55666788874 445899999998754
No 422
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=44.76 E-value=39 Score=32.19 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=46.4
Q ss_pred EEEEecCCCccchhhcc-cchhhhhHHhhhCC-eEeccceeeCCCCCCCCC-CCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1015 AELEINDFPQNARWKVT-HKETLGPISEWTGA-AITTRGQYFPPSRIAGPG-ERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1015 ~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~-~i~~kG~~~~~~~~~~~~-~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
++|.|.+. .+-..+- ++.++..|++.||| .|.+.+. .....+. ++.-=+.|.| +..+|+.|+.+|..+|.
T Consensus 69 ~~v~Vp~~--~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~----~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 69 DVIQVPRN--LVGKVIGKNGKLIQEIVDKSGVVRVRIEAE----NEKNVPQEEGMVPFVFVG-TKDSIANATVLLDYHLN 141 (144)
T ss_dssp EEEEEEGG--GHHHHHCGGGHHHHHHHHHHTCSEEEEEEE----CTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred EEEEECHH--HcCeeECCCCHHHHHHHHHHCCEEEEEcCC----CCCCccccCCeeEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 56666554 4444444 48899999999997 7876542 1111122 2322367778 66799999999998875
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
.
T Consensus 142 ~ 142 (144)
T 2qnd_A 142 Y 142 (144)
T ss_dssp T
T ss_pred h
Confidence 3
No 423
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=44.62 E-value=30 Score=29.19 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=29.2
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988888999999999986 5555 7754
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.49 E-value=12 Score=38.71 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|.-++++||.|||||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677889999999999974
No 425
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=44.38 E-value=10 Score=42.73 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=17.8
Q ss_pred HHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 498 LPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 498 i~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
+..++.|.++ +..|.||||||.++
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4556788774 44589999999764
No 426
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=44.21 E-value=13 Score=42.63 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|.||||||..+
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 455667788874 44589999999764
No 427
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.03 E-value=13 Score=39.37 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997543
No 428
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=43.84 E-value=20 Score=35.79 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
++|+|.+|||||.-+. -+. . . +..+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~-~la----~------~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-ALI----G------D-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH-HHH----C------S-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHH-HHH----h------c-CCCeEEEecCCC
Confidence 6889999999996433 222 1 1 334678876443
No 429
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.81 E-value=7.8 Score=39.02 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|+.|||||++.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668889999999998543
No 430
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=43.50 E-value=14 Score=41.58 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHHH
Q 001261 496 QALPVIMSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..+..++.|.++ +..|.||||||.++.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 345667788774 445899999998754
No 431
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.50 E-value=8.1 Score=39.06 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|+.|||||+..-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 45568889999999998543
No 432
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.39 E-value=16 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888899875
No 433
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.26 E-value=9.9 Score=38.32 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++++|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998543
No 434
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=43.17 E-value=24 Score=40.63 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=43.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
+.++||.||++.-|..++..+... ++.+.+++|. .....+..+.. ...|+|||.- +..+ .++. +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v-----~e~G----iDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI-----AEMG----ANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESSS-----TTCC----TTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh-----hhee----eccC-c
Confidence 457999999999999888777664 7888888884 33334444544 4699999952 2221 4666 7
Q ss_pred eEEE
Q 001261 619 TYLV 622 (1112)
Q Consensus 619 ~~vV 622 (1112)
++||
T Consensus 242 ~~VI 245 (440)
T 1yks_A 242 ERVL 245 (440)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7766
No 435
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.10 E-value=13 Score=36.69 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 001261 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-.+|+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999743
No 436
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=43.03 E-value=25 Score=40.30 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=39.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp 598 (1112)
+.++||.||++.-+..++..+... ++.+..++|+. ....+..+.. ..+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 347899999999999888877664 78888888763 3333444443 469999995
No 437
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=43.02 E-value=22 Score=31.77 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=32.5
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCH
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQ 750 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~ 750 (1112)
...++||||.+-..+..++..|...|+. +..|.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3568999999998899999999999995 8889998753
No 438
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.75 E-value=25 Score=49.65 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHH----HHHHHHHcCCCEEEEcCCCChHHHHHHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQA----QALPVIMSGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~----~ai~~il~g~dvii~a~TGsGKT~~~ll 523 (1112)
|...+.+.+...++. +++.+. |....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344566677777764 555542 2333445678899999999999986543
No 439
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.71 E-value=38 Score=37.77 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
...+|++|++|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 440
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.59 E-value=14 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
..+.-++++|+.|||||++.-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678889999999998543
No 441
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.55 E-value=18 Score=51.64 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHHH---HHHcCCCEEEEcCCCChHHHHHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQA-QALP---VIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~-~ai~---~il~g~dvii~a~TGsGKT~~~l 522 (1112)
|...|...+...|+. |++.+. .++. .+...+.++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566677778874 455443 3333 34466779999999999998754
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.15 E-value=12 Score=42.47 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++|+||||||||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6778999999997543
No 443
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.97 E-value=15 Score=37.32 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l 526 (1112)
-.+++|+.|||||+.++.-++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 468899999999986544333
No 444
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=41.89 E-value=10 Score=33.62 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=32.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
...++||||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999988899999999999999999999864
No 445
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=41.82 E-value=11 Score=37.56 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|+.|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999998543
No 446
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.78 E-value=14 Score=36.78 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|++|||||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46788999999997433
No 447
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.57 E-value=11 Score=38.30 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
++.+... ..+..|.-++++|++|||||+.+-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3444444 334566778889999999997543
No 448
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=41.46 E-value=12 Score=37.66 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++|++|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566788899999999754
No 449
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.38 E-value=1.2e+02 Score=34.14 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH---cCCCEEEEcCCCChHHHHHH
Q 001261 492 PIQAQALPVIM---SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 492 ~iQ~~ai~~il---~g~dvii~a~TGsGKT~~~l 522 (1112)
..=..+|..++ .|+.+.++|++|+|||....
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34445666655 68899999999999997543
No 450
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=41.34 E-value=69 Score=35.65 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=51.2
Q ss_pred cCeEEEEEecCCCccchhhcccc---hhhhhHHhhhCCeEeccceeeCCCCCCCC-CCCceEEEEEeCCHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHK---ETLGPISEWTGAAITTRGQYFPPSRIAGP-GERKLYLFIEGPTEQSVKRAKAEL 1086 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~---~~~~~i~~~tg~~i~~kG~~~~~~~~~~~-~~~~Lyl~ie~~~~~~v~~A~~~i 1086 (1112)
..|..+|+|+ |+.....+-++ .++..|.+.|||.|. ||....+.. .+.+--+.|.| +...|..|...|
T Consensus 184 ~~~s~~v~V~--~~~H~~IIGk~G~n~~IkkIr~eTGv~I~-----FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I 255 (376)
T 3n89_A 184 NNFTLHFTLS--TYYVDQVLGSSSTAQLMPVIERETTTIIS-----YPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYI 255 (376)
T ss_dssp SCEEEEEEEE--GGGHHHHTCCTTSCCHHHHHHHHHTCEEE-----CC---------CCEEEEEEES-CHHHHHHHHHHH
T ss_pred cceEEEEEeC--HHHHHHhhcCCCcchHHHHHHHhhCCEEE-----CCCCCCcccccCCceEEEEEe-CHHHHHHHHHHH
Confidence 4588888887 45677777776 467999999999998 454332221 23456788999 999999999999
Q ss_pred HHHH
Q 001261 1087 KRVL 1090 (1112)
Q Consensus 1087 ~~~~ 1090 (1112)
..+|
T Consensus 256 ~~lL 259 (376)
T 3n89_A 256 MDLL 259 (376)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 8875
No 451
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=41.12 E-value=11 Score=33.77 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=31.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...||.++.+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4568999999888888899999999999988888864
No 452
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.87 E-value=16 Score=35.12 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.8
Q ss_pred CEEEEcCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
-.+|+|++|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999975
No 453
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=40.82 E-value=21 Score=38.78 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-+.++|++|||||+.+-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567788999999997433
No 454
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=40.77 E-value=3.1e+02 Score=27.94 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=21.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~ 739 (1112)
.....|||.+-..+..+...|...|+
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 186 PTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp SCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCceEEEECCchhhhHHHHHHHHcCC
Confidence 34678999999999999999988875
No 455
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.73 E-value=11 Score=39.11 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=11.7
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-+.++||+|||||+.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667888999999999753
No 456
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=40.64 E-value=21 Score=43.45 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
+.++||.||++.-+..++..+.. .++.+..++|. .....+..+.. ..+|||||. .+... .++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-C
Confidence 56899999999998887776655 37888888884 34444444444 468999994 22222 4566 6
Q ss_pred eEEE
Q 001261 619 TYLV 622 (1112)
Q Consensus 619 ~~vV 622 (1112)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6655
No 457
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.58 E-value=12 Score=37.42 Aligned_cols=20 Identities=20% Similarity=0.141 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|++|||||++.-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35568889999999998543
No 458
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=40.46 E-value=15 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.7
Q ss_pred CEEEEcCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
.+.++|+.|||||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 459
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=40.40 E-value=16 Score=40.70 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=15.4
Q ss_pred cCCC--EEEEcCCCChHHHHHH
Q 001261 503 SGRD--CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~d--vii~a~TGsGKT~~~l 522 (1112)
.|.+ ++..|.||||||.+++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 4667999999997654
No 460
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=40.37 E-value=25 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=18.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
..++||.|.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999975444344333
No 461
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=40.36 E-value=13 Score=41.70 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=19.2
Q ss_pred HHHHHHcCCCEE--EEcCCCChHHHHHH
Q 001261 497 ALPVIMSGRDCI--GVAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dvi--i~a~TGsGKT~~~l 522 (1112)
.+..++.|.++. ..|.||||||..++
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 566677888744 45899999997643
No 462
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=40.33 E-value=6.8 Score=48.11 Aligned_cols=70 Identities=19% Similarity=0.433 Sum_probs=47.4
Q ss_pred CeEEEEeCCHHHHHHH-HHHHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-ccc-----------ccC
Q 001261 715 GKILIFVHSQEKCDAL-FRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAA-----------RGL 778 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l-~~~L~~~g---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~-----------~Gl 778 (1112)
+++||.+|++.-+... +..|.... +.+..+||+.+...+...+. +..+|||+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 78777653 89999999987554333222 5688999993 222 235
Q ss_pred CCCCccEEEE
Q 001261 779 DVKELELVIN 788 (1112)
Q Consensus 779 Di~~v~~VI~ 788 (1112)
.+..+.+||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6777888886
No 463
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=40.27 E-value=43 Score=40.76 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=52.0
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH---HHHHHHhc---CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKR---GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~---~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..+|+|+|+.-+..++..+.. .++.+..++|+.+.. .+...+.. ..+|||||.- +..+ .++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-----~e~G----lDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-----IGMG----LNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-----GGSS----CCC
T ss_pred CCEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-----HHCC----cCc
Confidence 346778988877776666655 478899999999877 45555664 3699999952 2222 567
Q ss_pred CCceEEEeccchhh
Q 001261 616 RRVTYLVMDEADRM 629 (1112)
Q Consensus 616 ~~i~~vViDEah~~ 629 (1112)
.+.+||+-...+.
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 7888888777653
No 464
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=39.87 E-value=16 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..++++||+|+|||+.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997543
No 465
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=39.81 E-value=39 Score=38.94 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCHHHHHHHHHHhhcCCccEEEecC-ccc
Q 001261 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~ 775 (1112)
..|....+..+... ..++||+||++.-+...+..|...++. +..+||+... ...|+|+|. .+.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~ 183 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAY 183 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHH
Confidence 45555544444443 579999999999999999999888999 9999998752 467999994 222
Q ss_pred ccCC-C-CCccEEEE
Q 001261 776 RGLD-V-KELELVIN 788 (1112)
Q Consensus 776 ~GlD-i-~~v~~VI~ 788 (1112)
.-++ + ..+.+||.
T Consensus 184 ~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 184 VNAEKLGNRFMLLIF 198 (472)
T ss_dssp HTHHHHTTTCSEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 2221 1 34777775
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.63 E-value=98 Score=30.54 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=35.8
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh
Q 001261 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK 588 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~ 588 (1112)
+.-|+|||+..+..+.... . .|.+++++= |...+.. |.. ....++.+... +.......+..+.
T Consensus 9 ~kgG~GKTt~a~~la~~la-~-------~g~~vlliD~D~~~~~~~-~~~-----~~~~~~~~~~~-~~~~l~~~l~~l~ 73 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALS-R-------SGYNIAVVDTDPQMSLTN-WSK-----AGKAAFDVFTA-ASEKDVYGIRKDL 73 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHH-H-------TTCCEEEEECCTTCHHHH-HHT-----TSCCSSEEEEC-CSHHHHHTHHHHT
T ss_pred CCCCccHHHHHHHHHHHHH-H-------CCCeEEEEECCCCCCHHH-HHh-----cCCCCCcEEec-CcHHHHHHHHHhc
Confidence 6789999986554443322 2 245566654 4333322 111 11223443332 2222233345555
Q ss_pred cCCeE-EEeCchHH
Q 001261 589 RGTEI-VVCTPGRM 601 (1112)
Q Consensus 589 ~~~~I-vV~Tp~~L 601 (1112)
..+++ ||=||+.+
T Consensus 74 ~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL 87 (206)
T ss_dssp TTSSEEEEECCSSS
T ss_pred CCCCEEEEECCCCC
Confidence 56654 45577654
No 467
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=39.39 E-value=88 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=42.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001261 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
.+||...-+....+...++..|+.++.++++.+...|..-+..|...-.+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 46788888888889999999999999999999999999999999865443
No 468
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=39.21 E-value=12 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.222 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999997543
No 469
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=39.07 E-value=25 Score=42.58 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=40.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp 598 (1112)
+.++||.|+|+.-+..++..+.. .++.+..++|+.+..+ ....+..|||||.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~e---r~~~~~~VLVATd 447 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSV---IPTIGDVVVVATD 447 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGG---SCSSSCEEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHH---HHhCCCcEEEECC
Confidence 56799999999999887776665 4788999999987653 1234669999995
No 470
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=39.03 E-value=16 Score=37.32 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.+|+.||+||||++++-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999986554
No 471
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.03 E-value=18 Score=36.35 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=25.4
Q ss_pred cCCceEEEeccchhh--hccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 615 LRRVTYLVMDEADRM--FDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~--~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+....+|||||+..| .+..|...+..++... ..+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 466789999998876 4444555555555432 2345446664
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.52 E-value=11 Score=37.28 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-+.++|++|||||+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999997543
No 473
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=38.26 E-value=12 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++|..|||||++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999753
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.26 E-value=15 Score=37.94 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+..++++|++|||||++.-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688899999999986443
No 475
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=38.03 E-value=14 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
+-++++|+.|||||++.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999998543
No 476
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.95 E-value=25 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++|++|+|||+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34557788999999997433
No 477
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=37.75 E-value=16 Score=40.83 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++|+|+||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999997653
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.46 E-value=17 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
.+-+|+.||+||||++++-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34577789999999986543
No 479
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=37.46 E-value=14 Score=38.49 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHH
Q 001261 503 SGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~ 519 (1112)
.|.-+.++||+|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678889999999996
No 480
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=37.37 E-value=12 Score=40.33 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-+|++|++|||||+.+-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999997533
No 481
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.20 E-value=17 Score=37.15 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+.++|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999997543
No 482
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=37.19 E-value=17 Score=37.45 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|++|||||++.-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999998543
No 483
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=37.11 E-value=19 Score=35.16 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|+.|||||+..-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997544
No 484
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=37.08 E-value=17 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
+.++++|..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468889999999998644
No 485
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=37.07 E-value=4.9e+02 Score=29.23 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=45.8
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEe--cccchhHHHHHHHHHhhhcCCeEEEEeC
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV--RPESDRFLRLLELLGEWYEKGKILIFVH 722 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~--~~~~~k~~~ll~~l~~~~~~~~vLIF~~ 722 (1112)
+...+-+|+|+.-.... .+.+.++..+-.+.+.+....... +...+ .+...-...|+.++... + ++++.-.
T Consensus 329 ~~~~~n~ii~~gyq~~g--t~g~~l~~~~~~v~~~g~~~~v~a--~v~~~~~~saHad~~~l~~~~~~~-~--~v~lvHg 401 (431)
T 3iek_A 329 LSDPRNALVFVGYQPQG--GLGAEIIARPPAVRILGEEVPLRA--SVHTLGGFSGHAGQDELLDWLQGE-P--RVVLVHG 401 (431)
T ss_dssp TTCTTCEEEECSCCCTT--SHHHHHHTCCSEEEETTEEEECCS--EEEECGGGCSSCCHHHHHHHHTTC-S--EEEEESS
T ss_pred cCCCCCeEEEECCCCCC--ChHHHhhcCCcEEEECCEEEEEEE--EEEEECCccccCCHHHHHHHHHhC-C--eEEEECC
Confidence 33344566666543222 134555555545566554332111 11122 22233445677777643 2 5555555
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 001261 723 SQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g~~ 740 (1112)
-...+..|+..|...+..
T Consensus 402 e~~~~~~l~~~l~~~~~~ 419 (431)
T 3iek_A 402 EEEKLLALGKLLALRGQE 419 (431)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHhCCc
Confidence 667788888888776553
No 486
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=37.06 E-value=17 Score=36.82 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|+.|||||++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 487
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.98 E-value=21 Score=35.19 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++++|++|||||++.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 488
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=36.98 E-value=14 Score=37.48 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.5
Q ss_pred CCCEEEEcCCCChHHHH
Q 001261 504 GRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~ 520 (1112)
|.-+.|+|++|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44567789999999974
No 489
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.85 E-value=18 Score=36.99 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++|++|||||++.-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999998644
No 490
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=36.84 E-value=58 Score=39.89 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh--------------------------------cCceEEEEeCCCChHHHHHH-
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKV--------------------------------MGVRCVPVYGGSGVAQQISE- 586 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~--------------------------------~~i~~~~~~gg~~~~~~~~~- 586 (1112)
+..+||.||++.-+..++..+...+.. +...+..++||.+..++...
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567899999999999888887764321 12347788999887766432
Q ss_pred --Hh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 587 --LK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 587 --l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+. ....|||||.- +..+ .++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~~-----l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATPT-----LAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECGG-----GGGS----SCCCBSEEEECC
T ss_pred HHHHcCCCeEEEEChH-----Hhcc----cCCCceEEEEeC
Confidence 23 34689999942 2222 577788776654
No 491
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=36.72 E-value=17 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||++.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998543
No 492
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=36.70 E-value=87 Score=28.11 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=38.5
Q ss_pred HHHHhhhcCCeEEEEe------CCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 706 ELLGEWYEKGKILIFV------HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~------~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
..+.......+++||+ ++...|..+...|...|+.+..+.=..+...+..+..
T Consensus 7 ~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 7 LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 4455555678999999 5788999999999999988776654455555554433
No 493
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=36.65 E-value=20 Score=36.71 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++|++|||||++.-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998644
No 494
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.53 E-value=15 Score=37.13 Aligned_cols=15 Identities=33% Similarity=0.149 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHHH
Q 001261 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
+.++|+.|||||++.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999753
No 495
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=36.41 E-value=18 Score=39.76 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..++++||+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999743
No 496
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=36.35 E-value=22 Score=35.20 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
-++++|+.|||||+. +..++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 467789999999963 44444444
No 497
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=36.29 E-value=15 Score=36.90 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.3
Q ss_pred CEEEEcCCCChHHHHH
Q 001261 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-++++|+.|||||++.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999854
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=36.28 E-value=22 Score=38.85 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.2
Q ss_pred EEEEcCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLA 520 (1112)
Q Consensus 507 vii~a~TGsGKT~~ 520 (1112)
++++|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999974
No 499
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.27 E-value=1e+02 Score=27.47 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCeEEEEeC------CHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 702 LRLLELLGEWYEKGKILIFVH------SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~------s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
..+...+.......+++||.. ..-.|..+...|...|+.+..+.=......+..+........+.+|+--...-
T Consensus 5 ~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 84 (109)
T 3ipz_A 5 PQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFF 84 (109)
T ss_dssp HHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTEEE
T ss_pred HHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEE
Q ss_pred ccCC
Q 001261 776 RGLD 779 (1112)
Q Consensus 776 ~GlD 779 (1112)
-|.|
T Consensus 85 GG~d 88 (109)
T 3ipz_A 85 GGCD 88 (109)
T ss_dssp ECHH
T ss_pred eCHH
No 500
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=36.18 E-value=14 Score=37.07 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHH
Q 001261 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
+.++|++|||||+..
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Done!