Query 001262
Match_columns 1112
No_of_seqs 888 out of 5482
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0334 RNA helicase [RNA proc 100.0 8E-122 2E-126 1088.8 55.7 846 203-1112 141-997 (997)
2 KOG0339 ATP-dependent RNA heli 100.0 9.8E-86 2.1E-90 716.2 33.4 440 407-849 163-603 (731)
3 KOG0331 ATP-dependent RNA heli 100.0 4.5E-78 9.8E-83 687.1 34.7 426 422-850 16-477 (519)
4 KOG0336 ATP-dependent RNA heli 100.0 2.3E-75 5E-80 620.1 32.8 436 416-855 161-606 (629)
5 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-74 7.4E-79 630.4 34.0 406 436-845 214-649 (673)
6 KOG0341 DEAD-box protein abstr 100.0 2.2E-74 4.9E-79 608.7 19.8 451 422-877 125-586 (610)
7 PTZ00110 helicase; Provisional 100.0 6.5E-71 1.4E-75 665.2 50.2 436 412-850 74-513 (545)
8 KOG0330 ATP-dependent RNA heli 100.0 2.7E-70 5.8E-75 581.8 32.4 365 466-838 60-424 (476)
9 PLN00206 DEAD-box ATP-dependen 100.0 5.1E-66 1.1E-70 621.3 45.8 432 413-848 65-502 (518)
10 KOG0338 ATP-dependent RNA heli 100.0 1.3E-66 2.9E-71 568.0 29.5 362 467-833 181-545 (691)
11 COG0513 SrmB Superfamily II DN 100.0 6.5E-65 1.4E-69 607.1 41.4 363 467-836 29-396 (513)
12 KOG0335 ATP-dependent RNA heli 100.0 3E-65 6.5E-70 571.6 31.7 391 455-848 62-471 (482)
13 KOG0328 Predicted ATP-dependen 100.0 7.6E-64 1.6E-68 510.4 27.2 373 463-844 23-396 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 1.7E-62 3.6E-67 538.0 32.7 362 466-830 81-446 (543)
15 KOG0340 ATP-dependent RNA heli 100.0 6.6E-62 1.4E-66 512.0 28.2 366 466-836 6-376 (442)
16 KOG0345 ATP-dependent RNA heli 100.0 1.1E-60 2.4E-65 519.3 33.7 359 467-827 4-370 (567)
17 KOG0326 ATP-dependent RNA heli 100.0 6.2E-62 1.3E-66 503.9 18.9 368 467-844 85-452 (459)
18 PRK04837 ATP-dependent RNA hel 100.0 1.6E-59 3.5E-64 555.0 41.5 369 465-837 6-378 (423)
19 KOG0343 RNA Helicase [RNA proc 100.0 2.9E-60 6.2E-65 522.6 31.1 363 465-832 67-434 (758)
20 PRK04537 ATP-dependent RNA hel 100.0 8.5E-59 1.8E-63 561.5 42.1 368 466-836 8-379 (572)
21 PRK11634 ATP-dependent RNA hel 100.0 1.9E-58 4.2E-63 560.9 42.3 363 466-837 5-368 (629)
22 PRK10590 ATP-dependent RNA hel 100.0 2.4E-58 5.2E-63 548.5 41.8 365 468-836 2-367 (456)
23 KOG0348 ATP-dependent RNA heli 100.0 2.5E-59 5.5E-64 514.0 29.7 368 463-832 132-565 (708)
24 PRK11776 ATP-dependent RNA hel 100.0 5.2E-58 1.1E-62 548.0 41.8 359 467-835 4-363 (460)
25 KOG0347 RNA helicase [RNA proc 100.0 4.1E-59 8.8E-64 513.8 22.5 373 463-837 177-586 (731)
26 PRK11192 ATP-dependent RNA hel 100.0 1.7E-56 3.7E-61 531.8 42.9 362 468-834 2-365 (434)
27 KOG0346 RNA helicase [RNA proc 100.0 1.7E-57 3.7E-62 489.7 29.6 367 467-835 19-424 (569)
28 PRK01297 ATP-dependent RNA hel 100.0 5.1E-55 1.1E-59 523.5 44.2 370 464-837 84-458 (475)
29 PTZ00424 helicase 45; Provisio 100.0 4.7E-53 1E-57 498.5 40.8 368 465-841 26-394 (401)
30 KOG0337 ATP-dependent RNA heli 100.0 2.3E-54 5E-59 463.7 19.4 363 466-835 20-382 (529)
31 KOG0332 ATP-dependent RNA heli 100.0 6.4E-53 1.4E-57 446.4 28.9 372 464-846 87-470 (477)
32 KOG0344 ATP-dependent RNA heli 100.0 4.6E-53 9.9E-58 474.9 26.2 402 445-848 110-522 (593)
33 KOG0327 Translation initiation 100.0 6.6E-53 1.4E-57 452.2 24.6 368 466-844 25-393 (397)
34 KOG4284 DEAD box protein [Tran 100.0 1.2E-51 2.6E-56 460.4 22.8 351 463-823 21-381 (980)
35 KOG0350 DEAD-box ATP-dependent 100.0 2.7E-49 5.9E-54 432.8 29.1 354 475-835 145-554 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 2.6E-48 5.7E-53 481.3 37.6 348 473-835 20-402 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 4.9E-47 1.1E-51 463.1 37.9 344 468-830 436-796 (1195)
38 TIGR00580 mfd transcription-re 100.0 8.5E-46 1.8E-50 461.9 35.2 369 475-897 437-819 (926)
39 KOG0924 mRNA splicing factor A 100.0 1.1E-47 2.4E-52 430.6 16.0 496 247-821 168-697 (1042)
40 PRK10689 transcription-repair 100.0 1.7E-45 3.7E-50 468.5 35.9 367 477-897 589-968 (1147)
41 TIGR00614 recQ_fam ATP-depende 100.0 7E-45 1.5E-49 434.2 37.2 328 484-831 6-343 (470)
42 PRK10917 ATP-dependent DNA hel 100.0 7.4E-44 1.6E-48 440.4 37.0 361 479-898 252-634 (681)
43 PRK11057 ATP-dependent DNA hel 100.0 3.2E-43 7E-48 430.4 38.0 331 476-830 11-352 (607)
44 TIGR00643 recG ATP-dependent D 100.0 2.2E-43 4.8E-48 433.7 35.5 364 476-897 223-610 (630)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.9E-43 1.3E-47 423.3 34.9 317 485-820 12-390 (844)
46 PRK13767 ATP-dependent helicas 100.0 1.8E-42 3.8E-47 437.8 37.1 343 474-820 18-397 (876)
47 PRK02362 ski2-like helicase; P 100.0 1.8E-42 4E-47 434.4 36.2 370 468-858 2-436 (737)
48 TIGR01389 recQ ATP-dependent D 100.0 5E-42 1.1E-46 421.5 34.8 326 481-830 4-340 (591)
49 KOG0329 ATP-dependent RNA heli 100.0 8.5E-44 1.8E-48 358.5 14.3 333 467-843 42-378 (387)
50 PRK00254 ski2-like helicase; P 100.0 3.7E-41 8.1E-46 421.6 35.7 338 468-822 2-389 (720)
51 PHA02653 RNA helicase NPH-II; 100.0 3.2E-39 7E-44 390.2 31.7 310 492-822 167-515 (675)
52 PRK01172 ski2-like helicase; P 100.0 3.9E-39 8.4E-44 401.9 32.8 334 468-821 2-378 (674)
53 COG1200 RecG RecG-like helicas 100.0 7E-39 1.5E-43 370.5 30.0 362 478-898 252-636 (677)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-38 2.2E-43 394.7 32.2 303 493-822 6-337 (819)
55 PRK09401 reverse gyrase; Revie 100.0 1.5E-38 3.2E-43 406.0 33.1 297 485-807 77-430 (1176)
56 KOG0349 Putative DEAD-box RNA 100.0 6E-40 1.3E-44 351.7 15.4 316 541-859 287-685 (725)
57 PRK11664 ATP-dependent RNA hel 100.0 2.9E-38 6.4E-43 391.9 29.7 306 493-823 9-341 (812)
58 COG1201 Lhr Lhr-like helicases 100.0 1.6E-37 3.5E-42 374.0 33.7 343 473-820 7-361 (814)
59 PRK09751 putative ATP-dependen 100.0 1.1E-37 2.5E-42 397.6 33.9 307 509-819 1-383 (1490)
60 PRK12898 secA preprotein trans 100.0 1.6E-37 3.4E-42 369.0 30.9 322 485-823 100-588 (656)
61 PRK14701 reverse gyrase; Provi 100.0 9.4E-38 2E-42 405.8 30.9 322 478-823 68-458 (1638)
62 COG0514 RecQ Superfamily II DN 100.0 3.7E-37 8.1E-42 358.6 30.7 328 480-832 7-348 (590)
63 TIGR01054 rgy reverse gyrase. 100.0 1.1E-35 2.3E-40 380.6 33.5 291 479-794 68-410 (1171)
64 TIGR01587 cas3_core CRISPR-ass 100.0 5E-36 1.1E-40 347.9 27.8 304 506-823 1-338 (358)
65 PRK09200 preprotein translocas 100.0 1.6E-35 3.4E-40 359.2 31.4 324 485-824 75-544 (790)
66 PHA02558 uvsW UvsW helicase; P 100.0 2.3E-35 5E-40 354.1 31.5 301 487-812 112-443 (501)
67 TIGR03714 secA2 accessory Sec 100.0 4.3E-35 9.2E-40 351.9 31.9 321 491-824 70-540 (762)
68 COG1197 Mfd Transcription-repa 100.0 1.8E-34 3.9E-39 351.1 32.9 368 476-897 581-962 (1139)
69 TIGR00963 secA preprotein tran 100.0 1.7E-34 3.7E-39 344.3 31.3 324 485-825 53-521 (745)
70 COG1111 MPH1 ERCC4-like helica 100.0 2.4E-33 5.3E-38 311.4 32.9 324 486-823 12-483 (542)
71 PRK11131 ATP-dependent RNA hel 100.0 1E-33 2.2E-38 355.4 30.1 299 493-823 78-413 (1294)
72 COG1202 Superfamily II helicas 100.0 6.6E-34 1.4E-38 315.9 24.5 338 468-822 195-554 (830)
73 PRK13766 Hef nuclease; Provisi 100.0 1.9E-32 4E-37 348.4 37.0 324 486-822 12-480 (773)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 2.6E-32 5.5E-37 313.8 31.8 292 493-806 1-357 (357)
75 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5E-33 1.1E-37 350.6 27.2 303 496-823 74-406 (1283)
76 KOG0351 ATP-dependent DNA heli 100.0 9.3E-33 2E-37 339.7 26.6 335 478-831 252-602 (941)
77 COG1204 Superfamily II helicas 100.0 2.2E-32 4.7E-37 335.2 29.3 333 472-819 14-406 (766)
78 KOG0352 ATP-dependent DNA heli 100.0 1.7E-32 3.7E-37 294.8 23.1 333 478-831 7-372 (641)
79 COG1205 Distinct helicase fami 100.0 4.6E-31 1E-35 328.1 32.6 337 474-819 55-420 (851)
80 KOG0354 DEAD-box like helicase 100.0 4.4E-31 9.6E-36 310.5 27.3 323 487-822 60-530 (746)
81 TIGR00603 rad25 DNA repair hel 100.0 1.3E-30 2.7E-35 313.7 30.7 309 488-823 254-609 (732)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 3.6E-30 7.8E-35 304.1 27.8 362 484-858 105-525 (1230)
83 PRK04914 ATP-dependent helicas 100.0 5.6E-29 1.2E-33 309.6 37.2 356 488-859 151-644 (956)
84 KOG0353 ATP-dependent DNA heli 100.0 6.1E-30 1.3E-34 270.7 21.5 344 470-830 74-476 (695)
85 PRK05580 primosome assembly pr 100.0 1.2E-28 2.5E-33 304.0 35.1 309 489-820 144-548 (679)
86 KOG0923 mRNA splicing factor A 100.0 8.9E-30 1.9E-34 287.1 19.5 309 491-821 267-606 (902)
87 KOG0922 DEAH-box RNA helicase 100.0 2.6E-29 5.6E-34 288.1 20.5 309 492-823 54-392 (674)
88 PRK12899 secA preprotein trans 100.0 7.2E-28 1.6E-32 290.1 32.5 183 436-630 32-228 (970)
89 PRK09694 helicase Cas3; Provis 100.0 1.4E-27 3.1E-32 295.5 36.0 314 485-810 282-664 (878)
90 PRK13104 secA preprotein trans 100.0 6E-28 1.3E-32 291.9 29.6 321 485-824 79-590 (896)
91 cd00268 DEADc DEAD-box helicas 100.0 6.3E-28 1.4E-32 256.9 24.4 202 469-676 1-202 (203)
92 COG1643 HrpA HrpA-like helicas 100.0 2.1E-28 4.7E-33 297.8 21.8 308 492-822 53-388 (845)
93 PRK12906 secA preprotein trans 100.0 1.3E-27 2.9E-32 287.9 27.2 323 485-824 77-556 (796)
94 PRK12904 preprotein translocas 100.0 7.2E-27 1.6E-31 282.7 30.1 323 485-824 78-576 (830)
95 TIGR00595 priA primosomal prot 100.0 1.3E-26 2.9E-31 275.9 29.9 288 508-818 1-378 (505)
96 KOG0951 RNA helicase BRR2, DEA 100.0 4.7E-27 1E-31 280.3 25.8 361 485-858 305-736 (1674)
97 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-26 3E-31 272.7 28.2 298 488-813 35-382 (442)
98 PLN03142 Probable chromatin-re 99.9 8.5E-25 1.8E-29 273.1 31.6 317 489-821 169-599 (1033)
99 PRK13107 preprotein translocas 99.9 2.9E-25 6.2E-30 267.7 26.3 322 485-823 79-593 (908)
100 PRK11448 hsdR type I restricti 99.9 1E-24 2.2E-29 277.8 29.3 306 488-809 412-801 (1123)
101 KOG0926 DEAH-box RNA helicase 99.9 2.1E-25 4.5E-30 255.9 18.0 307 495-821 262-704 (1172)
102 COG4098 comFA Superfamily II D 99.9 1.4E-23 3.1E-28 221.9 28.4 298 489-818 97-413 (441)
103 KOG0947 Cytoplasmic exosomal R 99.9 1E-23 2.2E-28 246.8 26.7 324 484-833 293-734 (1248)
104 COG4581 Superfamily II RNA hel 99.9 3.4E-23 7.3E-28 253.4 26.2 314 483-820 114-536 (1041)
105 KOG0948 Nuclear exosomal RNA h 99.9 4.9E-24 1.1E-28 243.6 17.5 308 489-821 129-539 (1041)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-23 4.2E-28 215.4 19.1 165 491-664 1-168 (169)
107 KOG0920 ATP-dependent RNA heli 99.9 8.1E-23 1.8E-27 247.7 25.3 313 490-821 174-544 (924)
108 KOG0385 Chromatin remodeling c 99.9 1.7E-22 3.7E-27 232.4 25.3 314 489-821 167-599 (971)
109 KOG0950 DNA polymerase theta/e 99.9 5E-23 1.1E-27 243.7 21.4 343 473-831 206-621 (1008)
110 KOG0925 mRNA splicing factor A 99.9 6.6E-23 1.4E-27 224.7 19.6 329 465-821 23-387 (699)
111 TIGR00631 uvrb excinuclease AB 99.9 9.6E-21 2.1E-25 230.9 33.9 131 695-826 422-558 (655)
112 COG1203 CRISPR-associated heli 99.9 1.6E-21 3.4E-26 243.2 25.2 337 489-832 195-561 (733)
113 PRK12900 secA preprotein trans 99.9 4.3E-21 9.3E-26 232.3 23.8 127 696-824 579-714 (1025)
114 COG1110 Reverse gyrase [DNA re 99.9 6.3E-20 1.4E-24 218.3 30.6 280 485-792 79-416 (1187)
115 TIGR01407 dinG_rel DnaQ family 99.9 2E-19 4.3E-24 229.2 34.9 344 475-834 232-829 (850)
116 KOG2340 Uncharacterized conser 99.9 4.6E-21 1E-25 212.5 16.9 346 485-831 212-678 (698)
117 PRK05298 excinuclease ABC subu 99.9 2.5E-19 5.5E-24 220.4 32.2 147 697-844 428-589 (652)
118 KOG0384 Chromodomain-helicase 99.9 5.7E-21 1.2E-25 230.0 17.0 367 432-822 316-812 (1373)
119 COG0556 UvrB Helicase subunit 99.9 3.3E-19 7.2E-24 199.0 29.2 164 649-820 387-556 (663)
120 KOG0387 Transcription-coupled 99.8 6.5E-20 1.4E-24 212.7 23.9 311 489-820 205-657 (923)
121 PRK12326 preprotein translocas 99.8 3.6E-19 7.9E-24 210.4 30.0 321 485-823 75-549 (764)
122 COG1198 PriA Primosomal protei 99.8 6.9E-19 1.5E-23 212.2 28.5 308 488-818 197-600 (730)
123 PF06862 DUF1253: Protein of u 99.8 1.6E-18 3.5E-23 197.8 26.2 292 540-832 37-426 (442)
124 TIGR00348 hsdR type I site-spe 99.8 3.6E-18 7.8E-23 211.1 29.7 322 490-834 239-659 (667)
125 PRK13103 secA preprotein trans 99.8 2.8E-18 6E-23 207.8 26.0 322 485-824 79-594 (913)
126 COG4096 HsdR Type I site-speci 99.8 1.4E-18 3E-23 204.6 19.3 299 487-808 163-525 (875)
127 smart00487 DEXDc DEAD-like hel 99.8 4.4E-18 9.4E-23 179.4 21.3 188 484-680 3-192 (201)
128 KOG0390 DNA repair protein, SN 99.8 1.4E-17 3E-22 199.4 27.7 320 489-818 238-702 (776)
129 PRK12903 secA preprotein trans 99.8 4E-17 8.6E-22 195.5 30.7 322 485-824 75-542 (925)
130 PRK07246 bifunctional ATP-depe 99.8 8.2E-17 1.8E-21 202.2 34.5 328 485-834 242-798 (820)
131 KOG0392 SNF2 family DNA-depend 99.8 1.4E-17 2.9E-22 200.1 24.0 322 489-821 975-1454(1549)
132 KOG0389 SNF2 family DNA-depend 99.8 1.6E-17 3.6E-22 192.6 21.1 319 490-822 400-889 (941)
133 KOG1000 Chromatin remodeling p 99.8 1.4E-16 3E-21 175.9 25.1 326 488-833 197-617 (689)
134 KOG1123 RNA polymerase II tran 99.7 1.2E-17 2.7E-22 183.9 15.3 312 488-825 301-657 (776)
135 KOG1002 Nucleotide excision re 99.7 1.1E-16 2.3E-21 176.2 21.8 122 700-821 621-749 (791)
136 CHL00122 secA preprotein trans 99.7 4E-16 8.7E-21 188.5 25.7 280 485-781 73-491 (870)
137 KOG4150 Predicted ATP-dependen 99.7 7.5E-17 1.6E-21 179.6 16.2 348 480-836 277-657 (1034)
138 KOG0949 Predicted helicase, DE 99.7 8.6E-16 1.9E-20 181.2 22.6 162 489-660 511-673 (1330)
139 PRK08074 bifunctional ATP-depe 99.7 9.2E-15 2E-19 187.2 33.0 133 702-834 738-908 (928)
140 cd00079 HELICc Helicase superf 99.7 3E-16 6.4E-21 154.2 14.5 120 698-817 11-131 (131)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 2E-14 4.3E-19 172.8 32.9 107 713-821 469-616 (636)
142 PRK12902 secA preprotein trans 99.7 1.8E-14 3.8E-19 173.8 31.4 279 485-781 82-506 (939)
143 COG4889 Predicted helicase [Ge 99.7 2.9E-16 6.3E-21 182.4 11.2 335 468-818 141-585 (1518)
144 KOG0953 Mitochondrial RNA heli 99.7 2E-15 4.3E-20 169.5 16.9 267 504-820 191-476 (700)
145 KOG0386 Chromatin remodeling c 99.6 2.9E-15 6.4E-20 178.1 14.6 323 489-830 394-845 (1157)
146 PF00271 Helicase_C: Helicase 99.6 1.4E-15 3E-20 135.3 9.0 78 732-809 1-78 (78)
147 cd00046 DEXDc DEAD-like helica 99.6 2.8E-14 6E-19 141.3 16.7 144 505-658 1-144 (144)
148 KOG0391 SNF2 family DNA-depend 99.6 1.5E-13 3.3E-18 163.7 25.1 108 714-821 1276-1387(1958)
149 KOG0388 SNF2 family DNA-depend 99.5 2.7E-13 5.8E-18 155.1 21.0 123 698-820 1027-1153(1185)
150 PRK11747 dinG ATP-dependent DN 99.5 2.6E-12 5.5E-17 159.9 30.5 128 702-833 521-688 (697)
151 TIGR00604 rad3 DNA repair heli 99.5 2.6E-12 5.6E-17 161.2 30.7 74 485-563 6-83 (705)
152 KOG4439 RNA polymerase II tran 99.5 3.2E-13 6.8E-18 155.4 19.8 119 698-816 728-851 (901)
153 PF04851 ResIII: Type III rest 99.5 5.5E-14 1.2E-18 146.7 12.4 156 489-660 3-184 (184)
154 TIGR02562 cas3_yersinia CRISPR 99.5 8.7E-13 1.9E-17 161.6 22.2 313 488-810 407-881 (1110)
155 COG1199 DinG Rad3-related DNA 99.5 7.8E-12 1.7E-16 156.9 31.3 104 714-820 479-616 (654)
156 PRK12901 secA preprotein trans 99.5 1.2E-12 2.6E-17 159.6 22.5 126 696-824 609-744 (1112)
157 PRK14873 primosome assembly pr 99.5 2.5E-12 5.4E-17 157.1 25.2 271 512-818 168-536 (665)
158 KOG0951 RNA helicase BRR2, DEA 99.5 3.2E-13 6.9E-18 163.4 15.9 335 491-856 1145-1526(1674)
159 smart00490 HELICc helicase sup 99.4 3.8E-13 8.3E-18 120.3 9.0 81 729-809 2-82 (82)
160 COG0553 HepA Superfamily II DN 99.4 1.2E-11 2.6E-16 161.2 24.5 133 699-831 692-830 (866)
161 KOG1015 Transcription regulato 99.4 9.8E-12 2.1E-16 146.3 20.0 131 700-830 1127-1284(1567)
162 KOG0921 Dosage compensation co 99.3 1.1E-11 2.5E-16 145.6 12.3 307 496-819 385-772 (1282)
163 PF02399 Herpes_ori_bp: Origin 99.3 1.9E-10 4.1E-15 138.3 22.1 288 507-821 52-388 (824)
164 COG0610 Type I site-specific r 99.2 6.8E-09 1.5E-13 132.8 29.0 309 505-835 274-662 (962)
165 PF00176 SNF2_N: SNF2 family N 99.2 2.1E-10 4.5E-15 129.9 13.7 160 493-659 1-173 (299)
166 KOG1960 Predicted RNA-binding 99.1 8.8E-12 1.9E-16 134.0 0.2 84 1011-1094 91-175 (531)
167 COG0653 SecA Preprotein transl 99.0 6.3E-09 1.4E-13 126.3 19.4 314 495-822 84-546 (822)
168 PF07652 Flavi_DEAD: Flaviviru 99.0 6.8E-10 1.5E-14 107.2 7.7 135 504-662 4-140 (148)
169 smart00488 DEXDc2 DEAD-like he 98.9 8.6E-09 1.9E-13 115.2 14.6 76 485-563 5-84 (289)
170 smart00489 DEXDc3 DEAD-like he 98.9 8.6E-09 1.9E-13 115.2 14.6 76 485-563 5-84 (289)
171 PF07517 SecA_DEAD: SecA DEAD- 98.9 6.1E-08 1.3E-12 105.4 17.2 133 485-630 74-210 (266)
172 KOG1016 Predicted DNA helicase 98.8 2.4E-07 5.2E-12 108.0 20.2 111 715-825 720-851 (1387)
173 PRK15483 type III restriction- 98.5 1E-06 2.2E-11 109.9 14.5 73 764-836 501-583 (986)
174 TIGR00596 rad1 DNA repair prot 98.3 9.6E-06 2.1E-10 101.4 16.0 65 591-658 8-72 (814)
175 KOG0952 DNA/RNA helicase MER3/ 98.2 4E-07 8.6E-12 110.6 1.9 254 491-765 929-1206(1230)
176 COG3587 Restriction endonuclea 98.2 0.00011 2.4E-09 88.5 20.5 73 763-835 482-567 (985)
177 KOG1001 Helicase-like transcri 98.2 8.6E-06 1.9E-10 99.7 11.7 101 716-816 541-643 (674)
178 PF13086 AAA_11: AAA domain; P 98.1 2.5E-05 5.4E-10 84.7 12.4 72 490-562 2-75 (236)
179 KOG1131 RNA polymerase II tran 98.1 0.00059 1.3E-08 77.8 22.9 146 714-861 530-728 (755)
180 PF02562 PhoH: PhoH-like prote 98.0 8.9E-06 1.9E-10 85.2 7.0 146 488-657 3-155 (205)
181 PF13872 AAA_34: P-loop contai 98.0 3.4E-05 7.4E-10 84.3 11.1 175 470-663 24-225 (303)
182 TIGR00376 DNA helicase, putati 97.9 0.00053 1.1E-08 85.0 20.6 67 488-562 156-223 (637)
183 PF13604 AAA_30: AAA domain; P 97.9 4E-05 8.6E-10 80.9 8.9 124 489-658 1-131 (196)
184 KOG1802 RNA helicase nonsense 97.9 0.00022 4.8E-09 83.3 15.2 83 481-574 402-484 (935)
185 PF12340 DUF3638: Protein of u 97.9 0.00018 3.8E-09 76.1 12.9 154 468-631 4-186 (229)
186 PRK10536 hypothetical protein; 97.8 0.00022 4.9E-09 76.8 13.8 144 485-656 55-211 (262)
187 PF13307 Helicase_C_2: Helicas 97.8 4.7E-05 1E-09 78.2 8.2 105 714-820 9-149 (167)
188 TIGR01447 recD exodeoxyribonuc 97.6 0.00037 8E-09 85.2 12.7 146 491-657 147-295 (586)
189 PF09848 DUF2075: Uncharacteri 97.5 0.00025 5.5E-09 82.1 9.3 107 507-644 4-117 (352)
190 PRK10875 recD exonuclease V su 97.5 0.00053 1.2E-08 84.0 12.0 146 490-657 153-301 (615)
191 PRK12723 flagellar biosynthesi 97.5 0.0022 4.7E-08 74.3 15.9 171 504-724 174-349 (388)
192 KOG1132 Helicase of the DEAD s 97.4 0.00061 1.3E-08 82.7 10.6 141 489-631 21-261 (945)
193 TIGR01448 recD_rel helicase, p 97.4 0.00099 2.1E-08 83.9 12.9 129 488-657 322-452 (720)
194 KOG1803 DNA helicase [Replicat 97.4 0.00033 7.2E-09 81.9 7.9 63 489-559 185-248 (649)
195 COG3421 Uncharacterized protei 97.3 0.0013 2.9E-08 76.4 11.6 143 509-661 2-168 (812)
196 PRK14722 flhF flagellar biosyn 97.3 0.0024 5.2E-08 73.3 12.8 178 503-725 136-319 (374)
197 PF00448 SRP54: SRP54-type pro 97.2 0.0028 6.1E-08 66.7 12.2 171 507-725 4-178 (196)
198 PRK11889 flhF flagellar biosyn 97.2 0.0087 1.9E-07 68.4 16.0 170 504-724 241-414 (436)
199 PRK05703 flhF flagellar biosyn 97.2 0.01 2.2E-07 70.0 17.2 170 503-725 220-395 (424)
200 COG1419 FlhF Flagellar GTP-bin 97.1 0.0079 1.7E-07 68.6 14.8 173 503-725 202-376 (407)
201 KOG1805 DNA replication helica 97.1 0.0025 5.3E-08 78.3 11.3 146 463-631 647-810 (1100)
202 KOG0383 Predicted helicase [Ge 97.1 5.2E-05 1.1E-09 91.7 -3.4 78 699-777 615-696 (696)
203 PRK14974 cell division protein 97.1 0.0053 1.1E-07 69.8 12.6 132 505-670 141-276 (336)
204 PRK13889 conjugal transfer rel 97.0 0.0035 7.6E-08 80.4 12.2 124 488-657 345-470 (988)
205 PF13245 AAA_19: Part of AAA d 97.0 0.0023 5E-08 56.1 7.4 54 503-560 8-62 (76)
206 PRK06526 transposase; Provisio 97.0 0.0039 8.5E-08 68.4 10.7 30 499-528 93-122 (254)
207 PF13401 AAA_22: AAA domain; P 97.0 0.0034 7.3E-08 61.3 9.1 22 504-525 4-25 (131)
208 PRK04296 thymidine kinase; Pro 96.9 0.0017 3.8E-08 68.1 6.9 110 504-657 2-114 (190)
209 PRK13826 Dtr system oriT relax 96.9 0.081 1.7E-06 68.7 22.9 124 488-657 380-505 (1102)
210 PRK08181 transposase; Validate 96.9 0.013 2.7E-07 64.8 13.4 110 500-661 102-212 (269)
211 TIGR02768 TraA_Ti Ti-type conj 96.9 0.011 2.3E-07 75.1 14.4 124 488-657 351-476 (744)
212 PRK12727 flagellar biosynthesi 96.8 0.07 1.5E-06 63.5 19.5 169 503-724 349-521 (559)
213 COG1875 NYN ribonuclease and A 96.7 0.017 3.8E-07 64.2 12.8 163 484-675 223-415 (436)
214 cd02395 SF1_like-KH Splicing f 96.6 0.0049 1.1E-07 59.0 6.6 69 1025-1093 17-96 (120)
215 PRK12726 flagellar biosynthesi 96.6 0.038 8.2E-07 63.1 14.7 25 503-527 205-229 (407)
216 PF00580 UvrD-helicase: UvrD/R 96.6 0.0055 1.2E-07 69.6 8.2 125 490-627 1-125 (315)
217 TIGR02760 TraI_TIGR conjugativ 96.5 0.095 2.1E-06 73.0 20.3 210 489-736 429-648 (1960)
218 PF05970 PIF1: PIF1-like helic 96.4 0.0081 1.8E-07 69.9 8.6 60 489-556 1-66 (364)
219 smart00492 HELICc3 helicase su 96.4 0.021 4.6E-07 56.6 10.3 78 742-819 25-136 (141)
220 PF13871 Helicase_C_4: Helicas 96.4 0.0073 1.6E-07 66.1 7.6 65 755-819 52-125 (278)
221 cd00009 AAA The AAA+ (ATPases 96.4 0.021 4.5E-07 56.3 10.3 25 504-529 19-43 (151)
222 PRK14721 flhF flagellar biosyn 96.4 0.058 1.3E-06 63.2 14.8 173 503-725 190-364 (420)
223 PRK06835 DNA replication prote 96.3 0.053 1.1E-06 61.8 13.8 48 615-662 244-293 (329)
224 PF14617 CMS1: U3-containing 9 96.3 0.008 1.7E-07 65.0 6.6 86 539-628 125-212 (252)
225 KOG0119 Splicing factor 1/bran 96.2 0.0075 1.6E-07 68.6 6.3 64 1031-1094 161-232 (554)
226 PRK06731 flhF flagellar biosyn 96.2 0.097 2.1E-06 57.8 14.8 170 503-724 74-248 (270)
227 PRK14723 flhF flagellar biosyn 96.2 0.039 8.5E-07 68.7 12.6 130 504-669 185-317 (767)
228 PRK06995 flhF flagellar biosyn 96.2 0.1 2.2E-06 62.2 15.5 63 504-574 256-319 (484)
229 TIGR01073 pcrA ATP-dependent D 96.1 0.24 5.2E-06 63.3 20.1 72 488-565 3-74 (726)
230 PRK07952 DNA replication prote 96.1 0.051 1.1E-06 59.1 11.9 48 615-662 160-209 (244)
231 PRK12724 flagellar biosynthesi 96.1 0.12 2.7E-06 60.0 15.4 167 504-724 223-396 (432)
232 PRK00771 signal recognition pa 96.1 0.057 1.2E-06 63.8 13.1 130 505-669 96-228 (437)
233 KOG0298 DEAD box-containing he 96.1 0.014 3.1E-07 73.7 8.4 155 503-663 373-555 (1394)
234 PRK06921 hypothetical protein; 96.1 0.075 1.6E-06 58.9 13.2 45 503-555 116-160 (266)
235 smart00491 HELICc2 helicase su 96.0 0.035 7.5E-07 55.2 9.1 93 727-819 4-137 (142)
236 KOG1133 Helicase of the DEAD s 96.0 0.23 5.1E-06 59.5 17.0 122 696-820 609-779 (821)
237 TIGR01547 phage_term_2 phage t 95.9 0.028 6E-07 66.4 9.5 135 506-660 3-142 (396)
238 COG2805 PilT Tfp pilus assembl 95.9 0.012 2.6E-07 63.9 5.6 53 460-532 99-152 (353)
239 PF03354 Terminase_1: Phage Te 95.9 0.016 3.5E-07 70.0 7.6 150 492-654 1-159 (477)
240 smart00382 AAA ATPases associa 95.9 0.015 3.3E-07 56.7 6.1 19 504-522 2-20 (148)
241 cd01120 RecA-like_NTPases RecA 95.9 0.083 1.8E-06 53.3 11.7 20 507-526 2-21 (165)
242 PRK08116 hypothetical protein; 95.8 0.16 3.5E-06 56.3 14.5 48 615-663 176-226 (268)
243 PRK09183 transposase/IS protei 95.7 0.088 1.9E-06 58.1 11.9 26 500-525 98-123 (259)
244 PHA02533 17 large terminase pr 95.7 0.061 1.3E-06 65.3 11.3 148 489-658 59-210 (534)
245 TIGR00064 ftsY signal recognit 95.6 0.15 3.2E-06 56.7 13.4 133 505-670 73-214 (272)
246 TIGR01425 SRP54_euk signal rec 95.5 0.15 3.3E-06 59.8 13.2 127 506-669 102-235 (429)
247 cd01124 KaiC KaiC is a circadi 95.4 0.11 2.3E-06 54.2 10.9 48 507-563 2-49 (187)
248 PRK12377 putative replication 95.4 0.15 3.3E-06 55.7 12.0 47 615-661 161-209 (248)
249 PRK10867 signal recognition pa 95.4 0.15 3.2E-06 60.2 12.7 59 506-574 102-162 (433)
250 PRK14712 conjugal transfer nic 95.3 0.084 1.8E-06 70.7 11.3 62 489-556 835-900 (1623)
251 PRK06893 DNA replication initi 95.2 0.048 1E-06 59.1 7.6 46 616-661 90-137 (229)
252 TIGR01075 uvrD DNA helicase II 95.1 0.06 1.3E-06 68.6 9.3 71 488-564 3-73 (715)
253 TIGR03499 FlhF flagellar biosy 95.1 0.14 2.9E-06 57.4 11.1 26 503-528 193-218 (282)
254 PF05127 Helicase_RecD: Helica 95.1 0.012 2.5E-07 60.4 2.2 124 508-659 1-124 (177)
255 PRK10919 ATP-dependent DNA hel 95.1 0.063 1.4E-06 67.6 9.2 70 489-564 2-71 (672)
256 PRK05642 DNA replication initi 95.1 0.063 1.4E-06 58.4 8.0 45 616-660 96-141 (234)
257 PRK13709 conjugal transfer nic 95.0 0.13 2.9E-06 69.8 12.2 129 488-657 966-1099(1747)
258 PRK08727 hypothetical protein; 95.0 0.098 2.1E-06 56.9 9.3 47 616-662 92-140 (233)
259 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.12 2.6E-06 55.7 10.0 21 503-523 37-57 (226)
260 PRK10917 ATP-dependent DNA hel 94.9 0.1 2.2E-06 65.9 10.4 93 698-790 293-391 (681)
261 COG1444 Predicted P-loop ATPas 94.9 0.24 5.1E-06 61.4 12.7 149 482-659 207-357 (758)
262 TIGR00959 ffh signal recogniti 94.8 0.26 5.7E-06 58.1 12.4 133 506-670 101-236 (428)
263 PHA03333 putative ATPase subun 94.7 0.47 1E-05 57.9 14.3 135 500-658 183-332 (752)
264 KOG0989 Replication factor C, 94.7 0.13 2.8E-06 56.2 8.8 44 614-658 126-169 (346)
265 PRK07764 DNA polymerase III su 94.6 0.22 4.7E-06 63.5 12.2 42 616-659 119-160 (824)
266 COG1484 DnaC DNA replication p 94.6 0.19 4.1E-06 55.3 10.2 49 503-560 104-152 (254)
267 PF05621 TniB: Bacterial TniB 94.6 0.17 3.7E-06 56.0 9.6 54 505-562 62-118 (302)
268 TIGR01074 rep ATP-dependent DN 94.5 0.12 2.7E-06 65.4 9.7 69 490-564 2-70 (664)
269 PRK05580 primosome assembly pr 94.5 0.26 5.7E-06 62.1 12.4 92 698-790 173-266 (679)
270 PRK11054 helD DNA helicase IV; 94.5 0.13 2.8E-06 64.4 9.7 73 485-563 192-264 (684)
271 PRK08084 DNA replication initi 94.5 0.13 2.9E-06 55.9 8.6 43 618-660 98-142 (235)
272 PRK05707 DNA polymerase III su 94.4 0.21 4.5E-06 57.1 10.3 40 490-530 4-47 (328)
273 PRK12323 DNA polymerase III su 94.4 0.2 4.3E-06 61.1 10.4 40 615-655 122-161 (700)
274 PRK11773 uvrD DNA-dependent he 94.4 0.12 2.5E-06 66.0 9.0 70 489-564 9-78 (721)
275 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.39 8.5E-06 48.5 10.9 53 615-667 93-147 (159)
276 PRK07003 DNA polymerase III su 94.3 0.34 7.4E-06 60.0 12.3 41 616-658 118-158 (830)
277 PTZ00293 thymidine kinase; Pro 94.3 0.21 4.6E-06 52.7 9.3 38 504-549 4-41 (211)
278 PRK00149 dnaA chromosomal repl 94.3 0.2 4.3E-06 60.2 10.3 48 616-663 210-259 (450)
279 PHA02544 44 clamp loader, smal 94.3 0.18 3.8E-06 57.6 9.5 39 617-655 100-138 (316)
280 cd03115 SRP The signal recogni 94.2 0.89 1.9E-05 46.8 13.8 54 617-670 82-136 (173)
281 PRK08903 DnaA regulatory inact 94.2 0.18 4E-06 54.4 9.0 43 617-660 90-133 (227)
282 PRK12422 chromosomal replicati 94.2 0.31 6.7E-06 58.1 11.5 50 616-665 201-252 (445)
283 COG0552 FtsY Signal recognitio 94.1 0.66 1.4E-05 51.9 13.0 129 507-669 142-280 (340)
284 PRK14087 dnaA chromosomal repl 94.1 0.26 5.6E-06 58.9 10.7 48 615-662 204-253 (450)
285 TIGR00643 recG ATP-dependent D 94.1 0.17 3.7E-06 63.4 9.5 92 698-789 267-364 (630)
286 PRK10416 signal recognition pa 94.0 0.72 1.6E-05 52.4 13.6 134 504-670 114-256 (318)
287 TIGR02760 TraI_TIGR conjugativ 94.0 0.21 4.5E-06 69.8 10.7 62 488-556 1018-1084(1960)
288 PRK05986 cob(I)alamin adenolsy 93.9 0.22 4.7E-06 51.7 8.3 140 502-668 20-168 (191)
289 COG2256 MGS1 ATPase related to 93.9 0.28 6.1E-06 55.8 9.6 19 505-523 49-67 (436)
290 TIGR00362 DnaA chromosomal rep 93.9 0.37 8E-06 57.1 11.4 47 617-663 199-247 (405)
291 PTZ00112 origin recognition co 93.9 0.5 1.1E-05 59.1 12.4 23 507-530 784-806 (1164)
292 TIGR00595 priA primosomal prot 93.9 0.29 6.3E-06 59.4 10.6 92 698-790 8-101 (505)
293 PRK08533 flagellar accessory p 93.9 0.61 1.3E-05 50.5 12.1 51 503-562 23-73 (230)
294 TIGR02640 gas_vesic_GvpN gas v 93.8 0.45 9.8E-06 52.7 11.1 28 495-522 12-39 (262)
295 COG3973 Superfamily I DNA and 93.7 0.26 5.6E-06 58.4 9.2 71 493-569 213-285 (747)
296 PF13173 AAA_14: AAA domain 93.7 0.44 9.5E-06 46.4 9.7 38 617-657 61-98 (128)
297 PRK08939 primosomal protein Dn 93.6 0.55 1.2E-05 53.1 11.7 49 615-663 215-266 (306)
298 PRK14086 dnaA chromosomal repl 93.6 0.34 7.3E-06 59.2 10.4 49 615-663 375-425 (617)
299 TIGR00580 mfd transcription-re 93.6 0.26 5.6E-06 63.8 9.9 93 698-790 483-581 (926)
300 PRK12402 replication factor C 93.5 0.35 7.5E-06 55.7 10.2 39 616-655 124-162 (337)
301 PRK13833 conjugal transfer pro 93.5 0.23 5.1E-06 56.2 8.4 64 482-553 123-187 (323)
302 TIGR00708 cobA cob(I)alamin ad 93.5 0.28 6.1E-06 50.2 8.2 52 616-667 96-149 (173)
303 TIGR03015 pepcterm_ATPase puta 93.4 0.74 1.6E-05 51.0 12.3 33 490-522 24-61 (269)
304 TIGR02785 addA_Gpos recombinat 93.4 0.37 8E-06 65.0 11.3 126 489-628 1-126 (1232)
305 COG1474 CDC6 Cdc6-related prot 93.3 0.63 1.4E-05 53.9 11.6 26 505-531 43-68 (366)
306 KOG0670 U4/U6-associated splic 93.2 0.12 2.6E-06 60.0 5.3 43 522-574 496-538 (752)
307 PRK14873 primosome assembly pr 93.2 0.52 1.1E-05 58.9 11.3 93 697-790 170-265 (665)
308 PRK11331 5-methylcytosine-spec 93.2 0.29 6.3E-06 57.4 8.6 33 490-522 180-212 (459)
309 PRK07994 DNA polymerase III su 93.1 0.94 2E-05 56.1 13.4 19 507-525 41-59 (647)
310 PRK14956 DNA polymerase III su 93.1 0.41 9E-06 56.8 9.8 19 507-525 43-61 (484)
311 COG1435 Tdk Thymidine kinase [ 93.1 0.65 1.4E-05 48.0 9.8 91 504-629 4-94 (201)
312 PRK13894 conjugal transfer ATP 93.0 0.28 6E-06 55.8 8.1 66 480-553 125-191 (319)
313 PRK08769 DNA polymerase III su 93.0 0.57 1.2E-05 53.2 10.5 43 488-531 3-52 (319)
314 TIGR03877 thermo_KaiC_1 KaiC d 92.9 0.34 7.5E-06 52.8 8.4 52 503-563 20-71 (237)
315 PRK08691 DNA polymerase III su 92.9 0.76 1.6E-05 56.8 11.9 40 615-655 117-156 (709)
316 PF00004 AAA: ATPase family as 92.9 0.28 6.1E-06 47.5 6.9 16 618-633 59-74 (132)
317 PRK14960 DNA polymerase III su 92.8 0.69 1.5E-05 56.7 11.3 43 616-660 117-159 (702)
318 PRK14949 DNA polymerase III su 92.8 0.55 1.2E-05 59.4 10.6 43 616-660 118-160 (944)
319 PRK13342 recombination factor 92.8 0.78 1.7E-05 54.5 11.7 37 617-658 92-128 (413)
320 COG4626 Phage terminase-like p 92.7 0.71 1.5E-05 55.0 10.9 148 489-656 61-223 (546)
321 cd01122 GP4d_helicase GP4d_hel 92.7 0.27 5.8E-06 54.8 7.4 39 502-547 28-66 (271)
322 PF00308 Bac_DnaA: Bacterial d 92.7 0.31 6.8E-06 52.4 7.5 48 615-662 95-144 (219)
323 TIGR03689 pup_AAA proteasome A 92.7 0.63 1.4E-05 56.0 10.7 52 466-520 178-232 (512)
324 PRK13341 recombination factor 92.6 0.69 1.5E-05 58.3 11.4 40 617-661 109-148 (725)
325 PF05496 RuvB_N: Holliday junc 92.6 0.41 8.9E-06 50.8 7.9 17 506-522 52-68 (233)
326 PRK14964 DNA polymerase III su 92.6 0.35 7.5E-06 58.0 8.3 43 615-659 114-156 (491)
327 TIGR02881 spore_V_K stage V sp 92.4 0.3 6.5E-06 54.1 7.2 18 505-522 43-60 (261)
328 PRK00411 cdc6 cell division co 92.4 0.58 1.3E-05 55.2 10.1 25 505-530 56-80 (394)
329 TIGR02928 orc1/cdc6 family rep 92.4 0.74 1.6E-05 53.6 10.9 25 505-530 41-65 (365)
330 PRK04195 replication factor C 92.4 0.61 1.3E-05 56.5 10.4 18 504-521 39-56 (482)
331 COG2109 BtuR ATP:corrinoid ade 92.2 0.88 1.9E-05 46.6 9.3 53 617-669 122-176 (198)
332 TIGR02782 TrbB_P P-type conjug 92.1 0.46 9.9E-06 53.6 8.3 66 480-553 109-175 (299)
333 PRK06645 DNA polymerase III su 92.1 0.8 1.7E-05 55.3 10.7 20 506-525 45-64 (507)
334 PRK09111 DNA polymerase III su 92.1 1 2.2E-05 55.7 11.8 41 614-655 129-169 (598)
335 cd00984 DnaB_C DnaB helicase C 91.9 0.29 6.3E-06 53.4 6.3 47 503-556 12-61 (242)
336 PRK09112 DNA polymerase III su 91.9 0.77 1.7E-05 53.0 9.9 40 615-655 139-178 (351)
337 PRK14961 DNA polymerase III su 91.9 0.33 7.1E-06 56.6 7.0 38 616-654 118-155 (363)
338 PF06745 KaiC: KaiC; InterPro 91.8 0.41 8.8E-06 51.7 7.3 53 503-563 18-70 (226)
339 PRK14957 DNA polymerase III su 91.7 1.4 3E-05 53.7 12.2 40 615-655 117-156 (546)
340 PHA03368 DNA packaging termina 91.7 0.86 1.9E-05 55.5 10.2 137 501-660 251-392 (738)
341 PRK14088 dnaA chromosomal repl 91.7 1.3 2.7E-05 53.0 11.8 49 617-665 194-244 (440)
342 PF03969 AFG1_ATPase: AFG1-lik 91.6 1.5 3.2E-05 50.9 11.8 46 616-662 126-172 (362)
343 PLN03025 replication factor C 91.5 1.4 3E-05 50.4 11.5 40 617-658 99-138 (319)
344 PRK07471 DNA polymerase III su 91.5 0.92 2E-05 52.7 10.0 42 615-657 139-180 (365)
345 PF05876 Terminase_GpA: Phage 91.4 0.39 8.4E-06 59.0 7.2 70 489-565 16-88 (557)
346 PRK06067 flagellar accessory p 91.4 3.8 8.2E-05 44.5 14.3 51 504-563 25-75 (234)
347 COG1110 Reverse gyrase [DNA re 91.4 0.52 1.1E-05 59.2 8.1 63 713-775 124-192 (1187)
348 PF05707 Zot: Zonular occluden 91.4 0.44 9.6E-06 50.1 6.7 51 617-668 79-135 (193)
349 PRK14958 DNA polymerase III su 91.4 1.4 3E-05 53.6 11.7 39 616-655 118-156 (509)
350 PRK11823 DNA repair protein Ra 91.3 0.96 2.1E-05 54.1 10.2 50 504-562 80-129 (446)
351 PRK14969 DNA polymerase III su 91.3 0.93 2E-05 55.4 10.3 40 615-655 117-156 (527)
352 PF01695 IstB_IS21: IstB-like 91.3 0.43 9.3E-06 49.5 6.4 47 501-556 44-90 (178)
353 PRK14963 DNA polymerase III su 91.3 0.76 1.6E-05 55.7 9.4 23 507-530 39-61 (504)
354 PRK10689 transcription-repair 91.3 0.78 1.7E-05 60.9 10.2 76 713-788 648-728 (1147)
355 PRK14959 DNA polymerase III su 91.3 0.97 2.1E-05 55.5 10.2 20 506-525 40-59 (624)
356 PF05872 DUF853: Bacterial pro 91.2 0.46 1E-05 55.0 7.0 29 494-522 9-37 (502)
357 PF13177 DNA_pol3_delta2: DNA 91.2 1.8 3.9E-05 44.1 10.8 42 616-658 101-142 (162)
358 cd03239 ABC_SMC_head The struc 91.1 0.18 3.9E-06 52.3 3.3 42 616-657 115-157 (178)
359 PRK07940 DNA polymerase III su 91.1 1.2 2.5E-05 52.3 10.4 45 615-661 115-159 (394)
360 COG0470 HolB ATPase involved i 91.1 0.59 1.3E-05 53.3 8.0 27 504-531 23-50 (325)
361 PRK14962 DNA polymerase III su 91.1 1.2 2.6E-05 53.5 10.8 18 507-524 39-56 (472)
362 PRK14951 DNA polymerase III su 91.1 0.94 2E-05 55.9 10.0 44 616-661 123-166 (618)
363 KOG0738 AAA+-type ATPase [Post 90.9 1 2.2E-05 51.0 8.9 17 505-521 246-262 (491)
364 PRK11034 clpA ATP-dependent Cl 90.9 1.7 3.6E-05 55.3 12.2 45 618-662 279-327 (758)
365 CHL00181 cbbX CbbX; Provisiona 90.8 1.1 2.3E-05 50.4 9.4 21 504-524 59-79 (287)
366 KOG0670 U4/U6-associated splic 90.8 0.16 3.6E-06 58.9 2.9 9 508-516 435-443 (752)
367 TIGR03878 thermo_KaiC_2 KaiC d 90.7 1.5 3.3E-05 48.4 10.4 37 503-547 35-71 (259)
368 COG0541 Ffh Signal recognition 90.7 2.8 6E-05 48.6 12.4 131 507-670 103-236 (451)
369 PRK14952 DNA polymerase III su 90.6 1.3 2.8E-05 54.5 10.6 44 615-660 116-159 (584)
370 TIGR02639 ClpA ATP-dependent C 90.6 2.9 6.2E-05 53.5 14.2 22 504-525 203-224 (731)
371 COG0513 SrmB Superfamily II DN 90.4 0.93 2E-05 55.3 9.1 68 717-788 102-180 (513)
372 PRK14950 DNA polymerase III su 90.4 3.2 6.9E-05 51.6 13.9 41 615-657 118-158 (585)
373 PF02572 CobA_CobO_BtuR: ATP:c 90.4 2.1 4.5E-05 43.9 10.1 52 615-666 94-147 (172)
374 COG4962 CpaF Flp pilus assembl 90.3 0.42 9.1E-06 53.6 5.4 62 485-555 153-215 (355)
375 COG2255 RuvB Holliday junction 90.2 0.71 1.5E-05 50.2 6.9 27 597-630 90-116 (332)
376 KOG2543 Origin recognition com 90.2 1.7 3.6E-05 49.3 10.0 46 616-661 114-161 (438)
377 TIGR02880 cbbX_cfxQ probable R 90.2 1.6 3.6E-05 48.8 10.3 19 504-522 58-76 (284)
378 PRK14965 DNA polymerase III su 90.2 1.2 2.5E-05 55.2 9.8 45 615-661 117-161 (576)
379 TIGR02524 dot_icm_DotB Dot/Icm 90.2 0.44 9.5E-06 55.1 5.8 28 503-531 133-160 (358)
380 PRK14955 DNA polymerase III su 90.2 1.7 3.7E-05 51.2 10.9 20 506-525 40-59 (397)
381 PF03237 Terminase_6: Terminas 90.1 2.3 4.9E-05 49.3 11.9 145 508-673 1-154 (384)
382 TIGR03346 chaperone_ClpB ATP-d 90.0 2.7 5.8E-05 54.7 13.3 20 504-523 194-213 (852)
383 PRK06964 DNA polymerase III su 90.0 1.8 3.9E-05 49.7 10.4 40 491-531 3-47 (342)
384 COG1200 RecG RecG-like helicas 90.0 1.3 2.9E-05 53.8 9.7 89 700-788 297-390 (677)
385 KOG2028 ATPase related to the 90.0 1.1 2.4E-05 50.1 8.2 17 506-522 164-180 (554)
386 PTZ00454 26S protease regulato 89.9 1.1 2.3E-05 52.7 8.8 54 465-521 140-196 (398)
387 COG1198 PriA Primosomal protei 89.9 1.2 2.6E-05 55.7 9.5 93 695-788 225-319 (730)
388 PF05729 NACHT: NACHT domain 89.9 3.4 7.4E-05 41.5 11.6 25 506-531 2-26 (166)
389 PRK04328 hypothetical protein; 89.8 1.4 3E-05 48.4 9.1 52 503-563 22-73 (249)
390 PF10593 Z1: Z1 domain; Inter 89.8 0.7 1.5E-05 50.2 6.7 90 738-832 110-204 (239)
391 TIGR02525 plasmid_TraJ plasmid 89.8 0.56 1.2E-05 54.4 6.2 48 465-531 128-175 (372)
392 KOG1133 Helicase of the DEAD s 89.7 0.43 9.4E-06 57.4 5.2 42 489-530 15-60 (821)
393 COG2804 PulE Type II secretory 89.6 0.6 1.3E-05 55.0 6.2 40 491-531 243-284 (500)
394 TIGR00767 rho transcription te 89.5 1 2.3E-05 52.1 8.0 27 502-529 166-192 (415)
395 KOG1513 Nuclear helicase MOP-3 89.5 0.38 8.1E-06 58.3 4.5 79 758-836 851-941 (1300)
396 PRK05563 DNA polymerase III su 89.4 1.7 3.6E-05 53.6 10.2 21 505-525 39-59 (559)
397 TIGR01642 U2AF_lg U2 snRNP aux 89.3 0.028 6E-07 68.8 -5.2 7 813-819 494-500 (509)
398 cd01121 Sms Sms (bacterial rad 89.3 2 4.4E-05 49.9 10.4 50 504-562 82-131 (372)
399 COG3972 Superfamily I DNA and 89.3 0.98 2.1E-05 52.4 7.4 69 490-565 163-231 (660)
400 PRK13900 type IV secretion sys 89.2 1 2.2E-05 51.6 7.6 45 500-553 156-200 (332)
401 PRK13851 type IV secretion sys 89.2 0.56 1.2E-05 53.8 5.6 46 499-553 157-202 (344)
402 PHA00729 NTP-binding motif con 89.2 2.2 4.7E-05 45.7 9.5 74 592-668 60-138 (226)
403 PRK08699 DNA polymerase III su 89.1 2.4 5.2E-05 48.4 10.6 35 491-525 3-42 (325)
404 PHA00350 putative assembly pro 89.1 3.4 7.4E-05 48.1 11.8 25 507-531 4-29 (399)
405 TIGR03880 KaiC_arch_3 KaiC dom 89.0 1.9 4.1E-05 46.5 9.3 51 504-563 16-66 (224)
406 KOG0339 ATP-dependent RNA heli 89.0 1.9 4.2E-05 50.1 9.4 70 715-788 296-376 (731)
407 PF00265 TK: Thymidine kinase; 88.9 0.72 1.6E-05 47.6 5.7 36 507-550 4-39 (176)
408 KOG0331 ATP-dependent RNA heli 88.9 3 6.6E-05 49.8 11.4 88 716-807 167-272 (519)
409 PRK06871 DNA polymerase III su 88.9 2.6 5.6E-05 48.0 10.5 40 615-655 105-144 (325)
410 TIGR03345 VI_ClpV1 type VI sec 88.8 3.5 7.6E-05 53.4 12.9 18 505-522 209-226 (852)
411 COG2909 MalT ATP-dependent tra 88.7 0.69 1.5E-05 57.4 6.1 43 617-659 129-171 (894)
412 TIGR00635 ruvB Holliday juncti 88.6 1.1 2.4E-05 50.7 7.6 18 505-522 31-48 (305)
413 PRK04841 transcriptional regul 88.6 1.8 4E-05 57.0 10.7 44 617-660 121-164 (903)
414 KOG0739 AAA+-type ATPase [Post 88.4 5.8 0.00013 43.5 12.0 125 498-676 155-296 (439)
415 cd01128 rho_factor Transcripti 88.4 1.1 2.5E-05 48.9 7.1 19 501-519 13-31 (249)
416 PRK05896 DNA polymerase III su 88.4 0.85 1.9E-05 55.7 6.6 21 505-525 39-59 (605)
417 KOG2036 Predicted P-loop ATPas 88.4 5.7 0.00012 48.1 12.9 136 491-659 255-412 (1011)
418 PRK14954 DNA polymerase III su 88.2 0.91 2E-05 56.2 6.8 20 506-525 40-59 (620)
419 PRK07414 cob(I)yrinic acid a,c 88.1 6.9 0.00015 40.3 11.9 51 616-666 114-166 (178)
420 PF12846 AAA_10: AAA-like doma 88.0 1.4 2.9E-05 49.6 7.7 43 504-554 1-43 (304)
421 PRK13764 ATPase; Provisional 87.9 0.98 2.1E-05 55.4 6.8 27 503-530 256-282 (602)
422 PRK14948 DNA polymerase III su 87.8 2.6 5.7E-05 52.4 10.6 21 505-525 39-59 (620)
423 PF01637 Arch_ATPase: Archaeal 87.7 0.58 1.3E-05 50.3 4.3 40 619-658 120-165 (234)
424 TIGR00665 DnaB replicative DNA 87.5 2.2 4.9E-05 51.0 9.6 37 504-547 195-231 (434)
425 TIGR02237 recomb_radB DNA repa 87.4 6 0.00013 42.0 11.9 38 503-548 11-48 (209)
426 KOG0742 AAA+-type ATPase [Post 87.4 1.7 3.7E-05 49.3 7.6 16 505-520 385-400 (630)
427 KOG0741 AAA+-type ATPase [Post 87.4 5 0.00011 47.3 11.5 69 471-549 493-573 (744)
428 PRK03992 proteasome-activating 87.3 1.6 3.4E-05 51.4 7.9 17 505-521 166-182 (389)
429 KOG0701 dsRNA-specific nucleas 87.3 0.42 9.1E-06 63.7 3.3 93 717-809 295-399 (1606)
430 KOG0740 AAA+-type ATPase [Post 87.2 1.9 4.1E-05 50.3 8.2 97 615-734 243-352 (428)
431 KOG0344 ATP-dependent RNA heli 87.2 8.7 0.00019 45.9 13.5 98 512-627 365-466 (593)
432 KOG0733 Nuclear AAA ATPase (VC 87.2 3 6.5E-05 50.0 9.7 54 465-521 506-562 (802)
433 KOG2227 Pre-initiation complex 87.2 3.3 7.1E-05 48.3 9.9 18 503-520 174-191 (529)
434 PRK11634 ATP-dependent RNA hel 87.0 2 4.4E-05 53.6 9.1 71 714-788 74-155 (629)
435 TIGR00678 holB DNA polymerase 87.0 2.8 6.1E-05 43.7 8.9 41 615-657 94-134 (188)
436 KOG0060 Long-chain acyl-CoA tr 87.0 0.98 2.1E-05 53.7 5.7 48 595-646 570-617 (659)
437 COG5008 PilU Tfp pilus assembl 86.7 0.55 1.2E-05 50.3 3.2 44 465-528 106-150 (375)
438 TIGR03881 KaiC_arch_4 KaiC dom 86.7 3.9 8.5E-05 44.1 10.1 50 503-561 19-68 (229)
439 PRK07993 DNA polymerase III su 86.6 2.9 6.4E-05 47.9 9.4 41 490-531 3-50 (334)
440 TIGR02858 spore_III_AA stage I 86.6 2.9 6.4E-05 46.3 9.0 24 497-520 101-127 (270)
441 KOG0780 Signal recognition par 86.6 5.9 0.00013 45.1 11.1 131 507-670 104-237 (483)
442 TIGR01243 CDC48 AAA family ATP 86.4 1.7 3.6E-05 55.8 8.0 55 464-521 447-504 (733)
443 KOG0745 Putative ATP-dependent 86.3 2 4.3E-05 49.4 7.5 21 502-522 224-244 (564)
444 PRK10865 protein disaggregatio 86.3 3.6 7.9E-05 53.4 11.0 20 505-524 200-219 (857)
445 PRK06090 DNA polymerase III su 86.2 2.5 5.4E-05 48.0 8.4 34 490-523 4-44 (319)
446 PF01443 Viral_helicase1: Vira 86.2 0.93 2E-05 49.0 4.9 19 507-526 1-19 (234)
447 PF06733 DEAD_2: DEAD_2; Inte 86.2 0.59 1.3E-05 48.2 3.2 48 583-631 112-159 (174)
448 TIGR02012 tigrfam_recA protein 86.2 1.5 3.2E-05 49.8 6.5 42 503-552 54-95 (321)
449 PRK08451 DNA polymerase III su 86.2 2.9 6.3E-05 50.7 9.4 40 615-655 115-154 (535)
450 PF00013 KH_1: KH domain syndr 86.1 1.3 2.9E-05 36.6 4.7 44 1031-1086 17-60 (60)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 85.9 3.6 7.8E-05 40.9 8.6 41 615-658 86-126 (144)
452 PF02534 T4SS-DNA_transf: Type 85.9 0.86 1.9E-05 55.1 4.9 46 505-560 45-90 (469)
453 CHL00095 clpC Clp protease ATP 85.9 3.6 7.8E-05 53.4 10.7 23 504-526 200-222 (821)
454 cd01130 VirB11-like_ATPase Typ 85.8 1.4 2.9E-05 46.1 5.7 32 489-520 9-41 (186)
455 cd00268 DEADc DEAD-box helicas 85.8 4.3 9.3E-05 42.7 9.6 71 714-788 69-149 (203)
456 TIGR00614 recQ_fam ATP-depende 85.7 3.4 7.5E-05 49.9 9.9 76 713-788 50-133 (470)
457 KOG1132 Helicase of the DEAD s 85.7 11 0.00024 47.2 13.9 105 715-820 562-721 (945)
458 PRK00440 rfc replication facto 85.6 7.2 0.00016 44.3 12.1 38 617-655 102-139 (319)
459 PHA00012 I assembly protein 85.4 7.3 0.00016 43.7 11.1 25 507-531 4-28 (361)
460 PRK07413 hypothetical protein; 85.4 1.7 3.6E-05 50.1 6.5 201 441-666 143-357 (382)
461 TIGR02868 CydC thiol reductant 85.4 2.6 5.5E-05 51.9 8.7 41 615-655 486-526 (529)
462 COG3267 ExeA Type II secretory 85.3 7.9 0.00017 41.9 10.9 24 499-522 45-69 (269)
463 PRK00080 ruvB Holliday junctio 85.3 1.6 3.5E-05 50.1 6.5 18 505-522 52-69 (328)
464 PRK14953 DNA polymerase III su 85.2 3.2 7E-05 50.1 9.2 19 507-525 41-59 (486)
465 TIGR02655 circ_KaiC circadian 85.2 4.3 9.3E-05 49.3 10.3 59 496-563 250-313 (484)
466 PRK05973 replicative DNA helic 85.1 1.4 3E-05 47.8 5.4 65 489-563 50-114 (237)
467 KOG0298 DEAD box-containing he 85.0 1.3 2.9E-05 56.9 5.9 96 714-813 1221-1316(1394)
468 KOG0741 AAA+-type ATPase [Post 85.0 2.4 5.2E-05 49.8 7.4 55 464-521 213-273 (744)
469 PRK09354 recA recombinase A; P 84.8 2.5 5.4E-05 48.4 7.6 42 504-553 60-101 (349)
470 PRK14701 reverse gyrase; Provi 84.8 4 8.6E-05 56.2 10.7 61 713-773 121-187 (1638)
471 COG1197 Mfd Transcription-repa 84.8 3.8 8.2E-05 53.1 9.7 90 699-788 627-722 (1139)
472 TIGR01420 pilT_fam pilus retra 84.8 2.2 4.7E-05 49.3 7.3 27 503-530 121-147 (343)
473 PRK14971 DNA polymerase III su 84.8 6.4 0.00014 49.0 11.7 43 614-658 118-160 (614)
474 TIGR01243 CDC48 AAA family ATP 84.7 3.6 7.8E-05 52.7 9.9 18 503-520 211-228 (733)
475 PRK05416 glmZ(sRNA)-inactivati 84.7 3.1 6.8E-05 46.5 8.2 27 722-749 258-284 (288)
476 COG1219 ClpX ATP-dependent pro 84.6 0.69 1.5E-05 51.0 2.8 21 502-522 95-115 (408)
477 COG0630 VirB11 Type IV secreto 84.6 1.3 2.9E-05 50.2 5.3 56 488-552 126-182 (312)
478 cd00983 recA RecA is a bacter 84.5 2.4 5.2E-05 48.2 7.2 43 504-554 55-97 (325)
479 cd01126 TraG_VirD4 The TraG/Tr 84.5 0.76 1.6E-05 54.0 3.4 42 506-557 1-42 (384)
480 cd01129 PulE-GspE PulE/GspE Th 84.5 2.4 5.2E-05 47.0 7.1 37 492-529 66-104 (264)
481 PRK06647 DNA polymerase III su 84.4 3.2 7E-05 51.0 8.9 19 506-524 40-58 (563)
482 TIGR03600 phage_DnaB phage rep 84.4 3.5 7.5E-05 49.1 9.0 38 503-547 193-230 (421)
483 PF03266 NTPase_1: NTPase; In 84.4 0.36 7.8E-06 49.5 0.5 118 506-643 1-123 (168)
484 PF02606 LpxK: Tetraacyldisacc 84.3 21 0.00045 40.8 14.7 232 506-772 36-287 (326)
485 COG2874 FlaH Predicted ATPases 84.2 17 0.00038 38.3 12.5 144 506-674 30-186 (235)
486 PRK07133 DNA polymerase III su 84.1 3.7 8E-05 51.4 9.1 27 1068-1094 663-689 (725)
487 PRK05342 clpX ATP-dependent pr 84.0 2 4.4E-05 50.6 6.6 20 503-522 107-126 (412)
488 TIGR01389 recQ ATP-dependent D 83.8 4.6 0.0001 50.4 10.1 76 713-788 52-133 (591)
489 PRK09435 membrane ATPase/prote 83.8 18 0.00038 41.5 13.7 22 507-529 59-80 (332)
490 COG3598 RepA RecA-family ATPas 83.7 4.9 0.00011 44.7 8.7 77 493-570 77-156 (402)
491 PRK06305 DNA polymerase III su 83.7 6.6 0.00014 47.1 10.9 20 506-525 41-60 (451)
492 KOG0347 RNA helicase [RNA proc 83.6 1.9 4.1E-05 50.7 5.8 53 716-772 265-321 (731)
493 PRK10436 hypothetical protein; 83.5 1.9 4E-05 51.6 6.1 37 492-529 204-242 (462)
494 cd02393 PNPase_KH Polynucleoti 83.5 2.3 5E-05 35.5 4.9 43 1031-1087 19-61 (61)
495 cd03247 ABCC_cytochrome_bd The 83.4 4.6 0.0001 41.7 8.4 42 615-657 114-155 (178)
496 COG1660 Predicted P-loop-conta 83.3 6.9 0.00015 42.3 9.4 241 507-748 4-283 (286)
497 PRK07413 hypothetical protein; 83.2 8.8 0.00019 44.4 11.0 197 507-720 22-240 (382)
498 PF03796 DnaB_C: DnaB-like hel 82.9 2.6 5.6E-05 46.5 6.7 157 486-655 1-177 (259)
499 COG1485 Predicted ATPase [Gene 82.8 5.4 0.00012 45.1 8.8 110 504-662 65-175 (367)
500 KOG1513 Nuclear helicase MOP-3 82.8 3.1 6.7E-05 50.9 7.3 236 489-754 264-532 (1300)
No 1
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-122 Score=1088.75 Aligned_cols=846 Identities=54% Similarity=0.819 Sum_probs=687.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHhhhcCCCCccCCcCCCCcccCcCCCCCccCCcCC-CCCCCCCCCCCCCC
Q 001262 203 DEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTG-KSETDMDADEEPKP 281 (1112)
Q Consensus 203 ~~~r~~~eE~~~r~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~r~~~~~~e~~ed~~~~~~~-~~e~~~~~~~~~~~ 281 (1112)
..+..+.++.++++++.+.|.+..++++.......-............|++.+++++++.+|... .++... ..
T Consensus 141 ~~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~t~~~~~~~~~~s~k~~~l~~~~d~~~~~~~~~~~s~q~~------~~ 214 (997)
T KOG0334|consen 141 SIQARLAEELRKRRERVEKWKELKRKEEKEKVVTLMLNVSDEKNSKKLWELEDEDDDDSANPAELGWSEQDV------PE 214 (997)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcchHHhhhhhhcccccccccccceEecCCCCccccCccccchhhccc------hh
Confidence 45667889999999999999998887776666554444455667778899999988777664321 111110 00
Q ss_pred CCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChhhHHhhhccCCCCCCCCCccccccccccCCCCCCCC
Q 001262 282 SENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGE 361 (1112)
Q Consensus 282 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~~~ 361 (1112)
.|.+ | +. ...++++||+|+||..+..+-+... .+...+ + ......+.
T Consensus 215 ~~~~----p---------~~-----~~~dd~~d~ld~~m~~~~~~~~~~~----~~~~~~---------~--~~~~~~s~ 261 (997)
T KOG0334|consen 215 LMKA----P---------NL-----MLVDDEEDPLDAFMEQMVGKVLAKF----SNSSHS---------K--AQVVEVSK 261 (997)
T ss_pred hccC----c---------cc-----cccccccchHHHHHHHHHHHHHHHh----cCCCcc---------c--ccccccch
Confidence 1100 0 00 2345679999999999743322221 111111 0 00011122
Q ss_pred CCCccccc-ccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHHHHhhhccCCcCCCcccccccccccccccchHhhh
Q 001262 362 QPKKSSNK-SLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIAR 440 (1112)
Q Consensus 362 ~~~~~~~~-~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~f~k~f~~~~~~~~~ 440 (1112)
+..++... ..+.+++..+...|..+.+.+++ ++...+.+..+....+.+..++|+.+.|.||+++||++..++..
T Consensus 262 ~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~di~~ 337 (997)
T KOG0334|consen 262 DARKGLNPKLSGFVIEPGLVNGDNEEVELNGS----FDNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRDIKR 337 (997)
T ss_pred hhhccCCccccceeccCCcCCcchhhhhhccc----cchHHHHHHhccccccceeecccccccchhhhhcccccchhHHH
Confidence 22333322 45666766655555444443333 44555666666566668899999999999999999999999999
Q ss_pred cCHHHHHHHHhhcC-ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHH
Q 001262 441 MTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 441 ~~~~~~~~~r~~~~-~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~ 519 (1112)
|+..++..|+..+. |.+.|..||.||++|.++|++..|+..|+++||.+|||||.+|||+||+|+|||++|.||||||+
T Consensus 338 ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~ 417 (997)
T KOG0334|consen 338 MSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTL 417 (997)
T ss_pred HHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccch
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCch
Q 001262 520 AFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPG 599 (1112)
Q Consensus 520 ~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~ 599 (1112)
+|+|||+.|++.|++...+.||.+|||+|||+||.||++++.+|++.++++++|+|||..+..|+..+++|+.|+|||||
T Consensus 418 af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpG 497 (997)
T KOG0334|consen 418 AFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPG 497 (997)
T ss_pred hhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001262 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
+++++++.+.+++++|.++.|||+||||+|++|+|.+++..|+.++++++|+++||||||..++.++...++.|+.++++
T Consensus 498 RmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~ 577 (997)
T KOG0334|consen 498 RMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG 577 (997)
T ss_pred hhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCceEEEEecc-cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001262 680 GRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 680 ~~~~~~~~i~q~~~~~~-~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 758 (1112)
+.++++..+.|.+.++. ...||..|+++|..+...+++||||..++.|+.|...|.+.||+|..|||+.++.+|..+++
T Consensus 578 ~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 578 GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHH
Confidence 99999999999999988 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccC
Q 001262 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~ 838 (1112)
+|++|.+.+||||+++++|||++.+.+||||++|+++++|+||+|||||+|++|.||+|+++.+..++.+|+++|..+++
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~ 737 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQ 737 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhccCCC-CCCCCcCCChhHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhhhccCC-Cc
Q 001262 839 VVPDDLKALADSFMAKVNQGLEQAHGTG-YGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGG-DI 916 (1112)
Q Consensus 839 ~vp~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~ 916 (1112)
.+|..|+.|+..|+.+++.+....+++| |+|+||.|.+...+.++..+.++.+.+|+.+...+++.+.+....++. ..
T Consensus 738 ~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~~~ 817 (997)
T KOG0334|consen 738 PVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEEELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPRE 817 (997)
T ss_pred CCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHHHHHHHHhhccccCcCCCCCCcccccccccchhhccccc
Confidence 9999999999999999999877767766 999999999998899999999999999998765554444332222211 11
Q ss_pred hhhhHHHHHHHHHHhhhhccCCCCCchhhhcCCCCCCCCCCCCccCcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHH
Q 001262 917 SQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAIN 996 (1112)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~ 996 (1112)
+.+.... . ... +.+..+.+.+...+...+++.+.+...++. ..+ ....+...|-..|..+|
T Consensus 818 s~~~~~~-------~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~r~~a~~~A~~~~ 878 (997)
T KOG0334|consen 818 SIQNPTF-------L---QVE-AESKTQEKTLLLGGELNAARPMVPYPVPGT-------AEF-QVIAARDDAEIKALLLN 878 (997)
T ss_pred cccCccc-------c---ccc-ccccchhhhhhccccccccccccccccccc-------ccc-cccchhhhHHHHHhhcc
Confidence 1111100 0 000 001112222221111111121111111111 000 00112222333334444
Q ss_pred HhhhHHHhhhccCCcC-----eEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEE
Q 001262 997 LQHNLAKIQADAMPEH-----YEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFI 1071 (1112)
Q Consensus 997 ~~~~~~~~~~~~~~~~-----~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~i 1071 (1112)
++++.. .....++. |.++++||||||.+||++|+++++..|.+.||++|||||+|||+|+.|++||++|||+|
T Consensus 879 ~~l~~~--~~~~s~d~~~~~~y~~~~~inD~Pq~~r~~vt~~~~L~~i~e~~~~~it~rg~f~~~gk~p~~gErklyl~v 956 (997)
T KOG0334|consen 879 AQLNYQ--LIDTSSDLILQFIYEAELEINDFPQNARWRVTYKEALLRISEPTAAGITTRGKFNPPGKEPKPGERKLYLLV 956 (997)
T ss_pred ccceee--cccCCccccccceeeeeccccccchhcceeeechhhhhhccCccccceeeccccCCCCCCCCCcchhhhhhh
Confidence 444322 22333444 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeC
Q 001262 1072 EGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112 (1112)
Q Consensus 1072 e~~~~~~v~~a~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 1112 (1112)
||+++..|++|+.+|+++|++++.+++.+.+...+|||.||
T Consensus 957 e~~~e~~vqra~~e~~r~l~e~~~~~~~~~~~~~~~~y~~~ 997 (997)
T KOG0334|consen 957 EGPDELSVQRAIEELERLLEEEVVNLFSSLQPSCKGRYLVV 997 (997)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccceeecC
Confidence 99999999999999999999999999887665559999997
No 2
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-86 Score=716.19 Aligned_cols=440 Identities=49% Similarity=0.810 Sum_probs=427.0
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHhhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001262 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~ 486 (1112)
.+++.+.+++++|++++|.||.++||.+++.|..|+..++..++..++++|.|..+|+|+++|.++|+...|+..+.+..
T Consensus 163 ~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 163 DKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSE 242 (731)
T ss_pred ccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
|.+|||+|+++||..++|+|||.+|.||||||.+|++|++-||++++.+..++||.+|||||||+||.||+.++++|++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
+|++++|+|||.+..+|+..|+.|+.|||||||+|++++.... ++|.+++|||||||++|++|||.+++..|..+++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998744 7899999999999999999999999999999999
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc-chhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+++|+|+|||||+..++.+++.+|.+|+.+..+.....+..|+|.+.++.. ..|+.+|+..|..+...|++|||+....
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999999999999999999999999999999888899999999987765 5799999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccc
Q 001262 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~ 805 (1112)
.++.++..|...+++|..+||+|+|.+|..+|..|+.+...|||||+++++||||+.+..|||||+-.+++.|+|||||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHH
Q 001262 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849 (1112)
Q Consensus 806 gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~ 849 (1112)
||+|.+|++|+|+|+.|..++..|++.|+..+|.||..|.+|+-
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999999999999999987763
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-78 Score=687.07 Aligned_cols=426 Identities=47% Similarity=0.855 Sum_probs=394.4
Q ss_pred cccccccccccccchHhhhcCHHHHHHHHhhcCceeccCC-CCCcccccc-----------------------------c
Q 001262 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD-VPKPIKTWH-----------------------------Q 471 (1112)
Q Consensus 422 ~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~-~p~pi~~~~-----------------------------~ 471 (1112)
.++.+|.++||.+.+....+...+...++....+.+.+.. +|.|+.+|. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677899999998887777777777778877777777755 777665554 4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc-CCCCCCCCCCcEEEEccch
Q 001262 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD-QPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 472 ~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~-~~~~~~~~~~~~LIl~Ptr 550 (1112)
++|+..+...|+..||..|||||+++||.+|+|+|+|++|.||||||++|++|++.|+.. ++....+.+|.+|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 566677777788999999999999999999999999999999999999999999999998 6777888899999999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh
Q 001262 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|||.|+..++..|+..++++++|+|||.++..|+..|.+|++|+|+|||+|++++..+. .+|++++|+||||||+|+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998754 789999999999999999
Q ss_pred cCCCchhHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcc--ccccCceEEEEecccchhHHHHHHH
Q 001262 631 DMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 631 ~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~--~~~~~i~q~~~~~~~~~k~~~ll~~ 707 (1112)
+|||.+++..|+..+ ++++|+|+||||||..+..|+..|+++|+.+.++... ..+.+|.|++.+++...|...|..+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~l 332 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKL 332 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHH
Confidence 999999999999999 7788999999999999999999999999999998664 6778899999999988999999999
Q ss_pred Hhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 708 LGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|.... ..+++||||+|+..|+.|...|...++++.+|||+++|.+|..+|+.|++|++.|||||+||+||||||+|++
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 98876 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHH
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 850 (1112)
|||||+|.+.++|+||+|||||+|++|.+++|++..+...+..+++.|....+.||+.|..+...
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988776543
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-75 Score=620.15 Aligned_cols=436 Identities=42% Similarity=0.711 Sum_probs=403.4
Q ss_pred cCCCcccccccccccccccchHhhhcCHHHHHHHHhhcC-ceec------cCCCCCccccccc-CCCCHHHHHHHHHCCC
Q 001262 416 IVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIH------GKDVPKPIKTWHQ-TGLTSKIMETIRKLNY 487 (1112)
Q Consensus 416 ~~~~~~~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~-~~v~------~~~~p~pi~~~~~-~~l~~~l~~~l~~~~~ 487 (1112)
.....|...+|+.++||.++.+.+.|++.++..++++.. |.+. ...+|+|..+|.+ |.-.+.++..|.+.||
T Consensus 161 ~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GF 240 (629)
T KOG0336|consen 161 DEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGF 240 (629)
T ss_pred hhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccC
Confidence 345567788999999999999999999999999998765 5543 2357999999987 6788999999999999
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+|||||.||||.+|+|.|+|++|.||+|||++||+|.+-|+..++.. ....+|.+|+++||++||.|+.-++.++. +
T Consensus 241 qKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-y 319 (629)
T KOG0336|consen 241 QKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-Y 319 (629)
T ss_pred CCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-h
Confidence 999999999999999999999999999999999999999999887643 34468999999999999999988888764 4
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
.|+..+|+|||.+..+|+..|++|.+|+|+||++|.++...+ +.+|..++||||||||+|+||||.+++.+|+-.++
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC
Confidence 689999999999999999999999999999999999998764 47899999999999999999999999999999999
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcccc-ccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~-~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
|++|+++.|||||..+..|+..|+.+|+.+.++....+ ...+.|.+.+..+..|+..+-.++....+..++||||..+.
T Consensus 397 PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKV 476 (629)
T ss_pred CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 99999999999999999999999999999999887654 56788988888888888777777777777889999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccc
Q 001262 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~ 805 (1112)
.|+.|...|.-.|+.+..|||+-.|.+|+..++.|++|.++|||||++++|||||++|++|+|||+|.+++.|+||+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 001262 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKV 855 (1112)
Q Consensus 806 gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~ 855 (1112)
||+|++|++++|++..|..++..|++.|..++|.||++|..|++.|..+.
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q 606 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQ 606 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998773
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.4e-74 Score=630.37 Aligned_cols=406 Identities=42% Similarity=0.730 Sum_probs=382.9
Q ss_pred hHhhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCC
Q 001262 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGS 515 (1112)
Q Consensus 436 ~~~~~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGs 515 (1112)
..+..|++.+|.-|+..+.|.+.|..+|.|+.+|.+.+||..+++.|...||..|||||.++||..++++|+|++++|||
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCC----CCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCC
Q 001262 516 GKTLAFVLPMLRHIKDQPPVAA----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591 (1112)
Q Consensus 516 GKT~~~llp~l~~l~~~~~~~~----~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~ 591 (1112)
|||++|++|++-.|...|+... ..||.++||+|||+||+||..+..+|++.+|++++.++||.+..+|-..+..||
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gc 373 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGC 373 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccc
Confidence 9999999999999998886543 359999999999999999999999999999999999999999999988999999
Q ss_pred eEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC-----------------------
Q 001262 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD----------------------- 648 (1112)
Q Consensus 592 ~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~----------------------- 648 (1112)
+|+|+|||+|++.|.+. .+-|++|.+||+||||+|+||||.+++..||.+++..
T Consensus 374 eiviatPgrLid~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 374 EIVIATPGRLIDSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred eeeecCchHHHHHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 99999999999999874 4678999999999999999999999999999988531
Q ss_pred --CcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHH
Q 001262 649 --RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726 (1112)
Q Consensus 649 --~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~ 726 (1112)
+|+++||||||+.++.+++.||..|+.++++..+.+...+.|.++....+.++..|+++|... ...++|||+|++..
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~ 529 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKG 529 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhh
Confidence 799999999999999999999999999999999999999999999999999999999999886 35699999999999
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHcccc
Q 001262 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 727 ~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~g 806 (1112)
|+.|++.|.+.||.|+.|||+.+|++|+.+|..|++|..+|||||++++||||||+|++|||||++.++++|+|||||||
T Consensus 530 ~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 530 ADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred HHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCccCchHHHHHHHhh-ccCCCChhHH
Q 001262 807 RAGRKGCAITFISEEDAKYSPDLVKALEL-SEQVVPDDLK 845 (1112)
Q Consensus 807 R~G~~g~~~~~~~~~d~~~~~~i~~~l~~-~~~~vp~~l~ 845 (1112)
|+|+.|+|++|+++.|...+.+|+.+|.. .....|++|.
T Consensus 610 RAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 610 RAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred ccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999999999999999998863 3455676654
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-74 Score=608.70 Aligned_cols=451 Identities=39% Similarity=0.662 Sum_probs=410.3
Q ss_pred cccccccccccccchHhhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH
Q 001262 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI 501 (1112)
Q Consensus 422 ~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~i 501 (1112)
+.|+.--+..|.++--+..||.++....|+.+.|.+.|..+|+||.+|.++.+|..+++.|++.|+..|||||.|.||.+
T Consensus 125 i~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv 204 (610)
T KOG0341|consen 125 ITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV 204 (610)
T ss_pred CcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE
Confidence 45665566778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcC---CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc------CceEE
Q 001262 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ---PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM------GVRCV 572 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~---~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~------~i~~~ 572 (1112)
++|+|+|++|-||||||++|.||++...+.+ .++..+.||.+|||||+|+||.|++..+..|+..+ .+++.
T Consensus 205 LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 205 LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 9999999999999999999999999877655 45677889999999999999999999999987765 36788
Q ss_pred EEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEE
Q 001262 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 573 ~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~i 652 (1112)
++.||.+..+|+..++.|.+|+|+|||+|.++|.. +..+|+-|.|+++||||||+||||...+..|+.++...+|++
T Consensus 285 LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 285 LCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred hhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 99999999999999999999999999999999976 457899999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHH
Q 001262 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
+||||||..++.|++..+-.|+.++++..+..+-++.|.+.++....|+.+|++.|... ..++||||..+.+++.++.
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999874 4589999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCcc
Q 001262 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 733 ~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|.-.|+.++.||||.+|++|...++.|+.|+.+|||||+|++.|||+|++.+|||||+|..+++|+||||||||.|++|
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC-ccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhhccCCCCC-CCCcCCChh
Q 001262 813 CAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYG-GSGFKFNEE 877 (1112)
Q Consensus 813 ~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~g~~~~~~ 877 (1112)
.+.+|+.+. +...+.+|...|....|.+|+.|..++......--.+.....|..|+ |-|..+.+-
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdC 586 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDC 586 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccC
Confidence 999999975 55667788888999999999998887754443222222223455554 458877654
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.5e-71 Score=665.21 Aligned_cols=436 Identities=46% Similarity=0.788 Sum_probs=405.3
Q ss_pred ccCCcCCCcccccccccccccccchHhhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001262 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 412 ~~~~~~~~~~~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v-~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p 490 (1112)
..+..+++....+.||.++||.+++.+..++.+++..++....+.+ .|..+|.|+.+|.+++|++.|++.|..+||..|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 3566788888889999999999999999999999999999998875 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++||.+++|+|+|++++||||||++|++|++.++..++....+.+|.+|||+||++||.|++..+..|+...+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766666678999999999999999999999999989999
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCc
Q 001262 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q 650 (1112)
+++++||.....+...+..+++|||+||++|++++... ..+|.++.+|||||||+|++++|..++..|+..+++++|
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999764 367899999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHhcC-CCeEEEecCcc-ccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHH
Q 001262 651 TVLFSATFPRQVEILARKVLN-KPVEIQVGGRS-VVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~-~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~ 727 (1112)
+|+||||||..+..++..++. .|+.+.++... .....+.+.+.+.....|...|..+|.... ...++||||+++..|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999999999999999886 68888776544 344677888887777888888888887765 567999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccC
Q 001262 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 728 ~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR 807 (1112)
+.|+..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++||||++|++|||||+|.++.+|+||+|||||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHH
Q 001262 808 AGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850 (1112)
Q Consensus 808 ~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 850 (1112)
+|..|.||+|+++.+...+..|++.|....+.||++|..|+..
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~ 513 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNE 513 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988653
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-70 Score=581.83 Aligned_cols=365 Identities=36% Similarity=0.614 Sum_probs=347.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.++++.+.++++++.+||..||+||.++||.++.|+|+|+.|+||||||.+|+||++++++.++. .+.+||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lV 134 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALV 134 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999998653 489999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||||||.||...|..++..+|+++++++||.+...|...+.+.++|||+|||+|++++.+. +.++|..+.|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLDE 212 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999864 347899999999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHH
Q 001262 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++||.|.+.+..|+..++..+|+++||||||..+..+....+.+|+.+.+...-.....+.|.|.+.+...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.... ++.+||||++...+..++-.|...|+.+..+||+|++..|.-.++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 9998754 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccC
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~ 838 (1112)
|||||+|.+..+|+||+||+||+|..|.+|+|++..|...+..|..++.....
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998898888876543
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.1e-66 Score=621.28 Aligned_cols=432 Identities=31% Similarity=0.539 Sum_probs=393.4
Q ss_pred cCCcCCCccccc-ccccccccccchHhhh-cCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001262 413 KLSIVDHSKIDY-QPFRKNFYIEVKEIAR-MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 413 ~~~~~~~~~~~~-~~f~k~f~~~~~~~~~-~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p 490 (1112)
....++|....+ .+|.++||...+.... ++..++..+++.++|.+.|..+|.|+.+|.+++|++.+++.|...||..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p 144 (518)
T PLN00206 65 SRVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP 144 (518)
T ss_pred ccCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC
Confidence 355677776665 7789999998777654 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC--CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP--VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~--~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
||+|.++||.++.|+|+|++++||||||++|++|++.++..... .....++++|||+||++||.|++..+..+...++
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999998875421 1223689999999999999999999999998889
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001262 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
+.+++++||.....++..+..+++|||+||++|++++... ...+.++.+|||||||+|+++||..++..|+..+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~ 300 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQ 300 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CC
Confidence 9999999999999999899999999999999999999764 3678999999999999999999999999999888 46
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHH
Q 001262 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~ 727 (1112)
.|+|+||||++..+..++..++.+++.+.++........+.+.+.+.....+...|+.+|..... .+++||||+++..+
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGA 380 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhH
Confidence 89999999999999999999999999998887777777788888888777788888888865432 35899999999999
Q ss_pred HHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHcccc
Q 001262 728 DALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 728 ~~l~~~L~~-~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~g 806 (1112)
+.|+..|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++|||||+|.++.+|+||+||||
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaG 460 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRAS 460 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccc
Confidence 999999975 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHH
Q 001262 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 807 R~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
|.|..|.|++|++..+...+..|++.|..+++.+|++|..+.
T Consensus 461 R~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 461 RMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred cCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999999999999999999999887544
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-66 Score=568.05 Aligned_cols=362 Identities=37% Similarity=0.573 Sum_probs=335.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|+..|+++|..+||..|||||..+||..+-|+|++.||.||||||.+|++|+|..|+..|.. ....+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999987643 235789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||||+||.|++.++++++.+..|.+++++||.+...|-..|...++|||+|||+|+|+|.+.. .++|++|.++|||||
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLDEA 336 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEechH
Confidence 999999999999999999999999999999999999999999999999999999999997654 368999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEe-cc--cchhHHH
Q 001262 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-RP--ESDRFLR 703 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~-~~--~~~k~~~ 703 (1112)
|||++.||..++..|+..++..+|++||||||+..+..|+...|+.|+.|.+.........+.|-|+. .+ +..+-..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999888877788776643 22 2345555
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC
Q 001262 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
|..++...+ ...+|||+.++..|..+.-.|--.|+.+.-|||.++|.+|...++.|+++.++|||||++++|||||++|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 556665544 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHH
Q 001262 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 784 ~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l 833 (1112)
.+||||++|.++..|+||+|||+|+|+.|.+++|+...+..++..|++.-
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998874
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-65 Score=607.11 Aligned_cols=363 Identities=44% Similarity=0.740 Sum_probs=336.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|..++|++.+++.|..+||..|||||.++||.++.|+|+|++|+||||||++|++|++.++..... ....+ +|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999774311 11112 9999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+|||+||.|+++++..++... ++.+++++||.+...|...|..|++|||+|||+|++++... .+++.++.+|||||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDE 182 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDE 182 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEecc
Confidence 999999999999999999998 79999999999999999999999999999999999999875 47899999999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccc--cccCceEEEEecccch-hHH
Q 001262 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESD-RFL 702 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~-k~~ 702 (1112)
||+|++|||...+..|+..++.++|+++||||||..+..++..++.+|+.+.+..... ....|.|.+..+.... |+.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888875554 7788999998888765 888
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001262 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..+|... ...++||||+++..|+.|+..|...|+.+..|||+|+|.+|..++..|++|...||||||+++|||||++
T Consensus 263 ~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 263 LLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 888888764 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC-ccCchHHHHHHHhhc
Q 001262 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELS 836 (1112)
Q Consensus 783 v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~~~~~i~~~l~~~ 836 (1112)
|++|||||+|.+++.|+||+|||||+|..|.+++|+++. +...+..|.+.+...
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 888888888887554
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-65 Score=571.60 Aligned_cols=391 Identities=42% Similarity=0.711 Sum_probs=366.8
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001262 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+.+.|.++|.++.+|..-.|.+.+...++..+|..|||+|+.+||.|..|+|+++||+||||||.+||+|++.+++...+
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCC----C-CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC
Q 001262 535 VAA----G-DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (1112)
Q Consensus 535 ~~~----~-~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~ 609 (1112)
... + ..|.+|||+|||+||.|+|.++.+|.-..++.++.+|||.+...+...+.++|+|+|||||+|.+++...
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 221 1 3599999999999999999999999988999999999999999999999999999999999999999764
Q ss_pred CCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCC----CCcEEEEeccccHHHHHHHHHhcCC-CeEEEecCccc
Q 001262 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRP----DRQTVLFSATFPRQVEILARKVLNK-PVEIQVGGRSV 683 (1112)
Q Consensus 610 ~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~----~~q~il~SAT~~~~~~~l~~~~l~~-p~~i~~~~~~~ 683 (1112)
.+.|+.+.||||||||+|+| |+|.++|..|+....- .+|++|||||+|..+..++..|+.+ .+.+.++..+.
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 36889999999999999999 9999999999988754 6899999999999999999999886 88899999999
Q ss_pred cccCceEEEEecccchhHHHHHHHHhhhh---cCC-----eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHH
Q 001262 684 VNKDITQLVEVRPESDRFLRLLELLGEWY---EKG-----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~-----~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~ 755 (1112)
...++.|.+.++....|...|+++|.... ..+ +++|||.++..|+.|...|...++++..|||...+.+|..
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999998655 344 8999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001262 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
++..|++|.+.|||||+|++||||||+|.+|||||+|.+..+|+||||||||.|+.|.++.|+...+...+..|++.|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHH
Q 001262 836 SEQVVPDDLKALA 848 (1112)
Q Consensus 836 ~~~~vp~~l~~~~ 848 (1112)
+++.||.||.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998743
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-64 Score=510.43 Aligned_cols=373 Identities=34% Similarity=0.581 Sum_probs=347.4
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001262 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
-.++.+|+++||...+++.+...||.+|+.||+.|||.|+.|+|+|+++..|+|||.+|.+.+|..+.-. ....+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 4678899999999999999999999999999999999999999999999999999999999988765432 23468
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001262 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||.|||+||.|+.+.+..++.++++.+..+.||.+..+++..+.-|+++|.+|||++++++.... .....+.+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlV 174 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLV 174 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 4667899999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc-hhH
Q 001262 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRF 701 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~-~k~ 701 (1112)
+||||.|++.||..++..|+..++|+.|++++|||+|..+.....+|+.+|+.+.+.....+...|.|++...... -|+
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988766554 488
Q ss_pred HHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|+++... ..-.+++|||||+..++.|.+.|...++.+.++||+|++.+|+.++..|++|..+|||+|++.+||+|++
T Consensus 255 dtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 255 DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 888877654 3457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001262 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|++|||||+|.+.+.|+|||||.||.|++|.++-|+...|...+.+|.+.+.......|-.+
T Consensus 334 qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred eeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 999999999999999999999999999999999999999999999999999988777777654
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-62 Score=537.95 Aligned_cols=362 Identities=33% Similarity=0.567 Sum_probs=337.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..+.|++.++++|..+||..+|++|+.+||.++.|+|+|+.|.||||||++|++|+++++...+... .++..+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999998876443 37888999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||||+||+|++.+++.++++. ++.+..+.||+........+.++|+|+|+|||+|+|+|.+..+ +.+..+.++|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlD 237 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLD 237 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEee
Confidence 9999999999999999999998 9999999999999988889999999999999999999988765 345667899999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC-CeEEEecC--ccccccCceEEEEecccchhH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK-PVEIQVGG--RSVVNKDITQLVEVRPESDRF 701 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~-p~~i~~~~--~~~~~~~i~q~~~~~~~~~k~ 701 (1112)
|||+++++||...+..|+..++..+|+++||||.|..+..+++-.+.. |+++.+.. .......+.|.+++.+...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999988865 87777654 345667889999999999999
Q ss_pred HHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..++.+|.+.....++||||+|...+..++..|....++|..|||+++|..|..++..|.+.+..|||||+|++||+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 99999999987778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
+|++||.||+|.++.+|+||+|||||.|..|.+++|+.+++..++..|.
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998887776
No 15
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-62 Score=512.03 Aligned_cols=366 Identities=36% Similarity=0.574 Sum_probs=334.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..|||++++.+.|+.+|+.+|||+|..|||.|+.|+|+|++|.||||||++|.+|+|+.+...| +|-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999988764 6889999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC-CccccCCceEEEec
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-KITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~-~~~~l~~i~~vViD 624 (1112)
++|||+||.|+.+.|..+.+.+++++..++||.+.-.|...|...++|||+|||+|.+++..+.+ -...++++.|+|||
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999987643 22457899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCC--eEEEecCccccccCceEEEEecccchhHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP--VEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p--~~i~~~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++.+|...+.-|+..++..+|+++||||+...+..+.......+ ..+.......+...+.|.+.+++...+-.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999998877766655553 33333334445667888899999999999
Q ss_pred HHHHHHhhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001262 703 RLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+|+.+|..+.. .+.++||+++..+|+.|+..|...++.+..+||.|+|.+|...+..|+++..+|||||+|++|||||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999988765 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001262 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|.|.+|||||+|.++.+|+||+||++|+|+.|.+++|+++.|...+..|...++..
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998888887776544
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-60 Score=519.30 Aligned_cols=359 Identities=34% Similarity=0.563 Sum_probs=322.9
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|+.++ |+++|+.+|..+||...||+|..+||.++.++||++.++||||||++|++|++..|........+...-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677665 55999999999999999999999999999999999999999999999999999998654322222224589
Q ss_pred EEccchhHHHHHHHHHHHHhhh-cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001262 545 IMAPTRELVQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||+||||||.||.+++..|... .++.+.+++||.+..+++..+.. ++.|+|||||+|.+++..... .+++.++.+||
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999999988 68999999999999999887764 788999999999999976442 34577999999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccc--cccCceEEEEecccchh
Q 001262 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~k 700 (1112)
|||||++++|||..++..|+..+|.++.|=|||||....+..+++..+.||+.+.+...+. .+..+...+.++....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987765 55567778888999999
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001262 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
+..|+.+|.. ....++|||++|...++.....|... .+.++.|||.|.+..|..++..|.+....||+||||++|||
T Consensus 243 ~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999987 45679999999999999999888765 67899999999999999999999998899999999999999
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchH
Q 001262 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 779 Di~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~ 827 (1112)
|||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+..+..
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999999999999999999999996655433
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-62 Score=503.92 Aligned_cols=368 Identities=31% Similarity=0.576 Sum_probs=345.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|++++|...++..+...||..|+|+|.++||.+++|+|+|+-|..|+|||.+|++|+|+.+... .+.-+++||
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987643 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||||+||.|+...++.+++.+++.+...+||++..+++-.+..+.+++|+|||++++++.. .+..++++.++|||||
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K---gVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK---GVADLSDCVILVMDEA 236 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc---ccccchhceEEEechh
Confidence 9999999999999999999999999999999999999999999999999999999999976 4578999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHH
Q 001262 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|.|++..|.+.+..++..+++.+|+++||||||-.+..|...++.+|..|.+- .......++|++.++.+..|+..|-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999988764 34556678999999999999888877
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEE
Q 001262 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++... .-.+.|||||+...++.|++.+.+.||+|+.+|+.|-|+.|..++..|++|.++.||||+.+.|||||+.+++|
T Consensus 316 LfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 77664 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001262 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 787 I~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
||||+|.+.++|+|||||.||.|..|.||.|++-+|...+..|...|.....++|..+
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999999999999999999998888888643
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-59 Score=555.03 Aligned_cols=369 Identities=34% Similarity=0.560 Sum_probs=333.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCc
Q 001262 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~ 542 (1112)
+-.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...+... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999987654321 134689
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001262 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++||.|++..+..++..+++.+.+++||.....+...+..+++|||+||++|++++... ...+.++.+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lV 162 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVV 162 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEE
Confidence 999999999999999999999999999999999999998888888889999999999999998653 35788999999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchh
Q 001262 623 MDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.......+
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 9999999999999999999999874 56789999999999999999999999888877666556667776666666677
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001262 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...|..++... ...++||||+++..|+.|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++||||
T Consensus 243 ~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 243 MRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 77777777653 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001262 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|+|++|||||+|.++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998888888877776543
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-60 Score=522.61 Aligned_cols=363 Identities=33% Similarity=0.537 Sum_probs=333.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+..|.+|+|+..+++.|+..+|..||.||+++||..+.|+|+|+.|.||||||++|++|+|.+|... .+....|.-||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCceeE
Confidence 45789999999999999999999999999999999999999999999999999999999999998753 24456788899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||.|||+||.|++.++.++++..++.+.++.||.........+. +++|+|||||+|+.++..+.. ++..++.+||||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLD 222 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLD 222 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCC--CCCCcceEEEec
Confidence 99999999999999999999999999999999998776666655 499999999999999987643 566789999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCc--cccccCceEEEEecccchhHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR--SVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~--~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++|||...+..|+.++++.+|++|||||.+..+..+++..+.+|.+|.+... ...+.++.|.|++++..+|+.
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 999999999999999999999999999999999999999999999999998888743 456778999999999999999
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001262 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
.|..+|..+. ..++|||+.|...+..++..+... |++++.+||.|+|..|..++..|......||+||++++||||+
T Consensus 303 ~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 9999998754 578999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCc-cCchHHHHHH
Q 001262 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d-~~~~~~i~~~ 832 (1112)
|.|++||.||||.++.+|+||+||++|.+..|.|++|+++.+ ..++..|.+.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 5555555544
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.5e-59 Score=561.53 Aligned_cols=368 Identities=36% Similarity=0.598 Sum_probs=333.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCcE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPVG 543 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~~ 543 (1112)
..+|.+|+|++.|++.|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++.++...+... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34799999999999999999999999999999999999999999999999999999999999987643221 1236899
Q ss_pred EEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEe
Q 001262 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 544 LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
|||+||++||.|++..+..|+..+++.+..++||.....+...+..+++|||+||++|++++... ....+..+.+|||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lVi 165 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICVL 165 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeEe
Confidence 99999999999999999999999999999999999999888888888999999999999988653 2356888999999
Q ss_pred ccchhhhcCCCchhHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhH
Q 001262 624 DEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701 (1112)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~ 701 (1112)
||||+|++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....++
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQ 245 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHH
Confidence 999999999999999999999876 789999999999999999999999998777766666666778888777777788
Q ss_pred HHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|+.++.. ....++||||+++..|+.|+..|...++.+..|||+|++.+|..+++.|++|.++|||||+++++||||+
T Consensus 246 ~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 246 TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 877777754 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001262 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
+|++||||++|.+..+|+||+||+||.|..|.|++|+++.+...+..|.+.+...
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999998888888887776543
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-58 Score=560.89 Aligned_cols=363 Identities=38% Similarity=0.639 Sum_probs=333.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887542 24689999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||||++||.|++..+..|...+ ++.++.++||.....++..+..+++|||+||++|++++.... ..|+++.+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlD 156 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLD 156 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEec
Confidence 9999999999999999998876 799999999999999999999999999999999999987643 568899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|++++|...+..|+..++..+|+++||||+|..+..++..++.+|..+.+.........+.+.+.......|...|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999998888877666667778877777777788888
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001262 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+|... ...++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|+
T Consensus 237 ~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 237 VRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 8777653 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001262 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 785 ~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+|||||+|.+++.|+||+|||||+|+.|.|++|+++.+...+..|.+.+....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999988888888887766543
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.4e-58 Score=548.49 Aligned_cols=365 Identities=38% Similarity=0.674 Sum_probs=329.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC-CCCCcEEEE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA-GDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~-~~~~~~LIl 546 (1112)
+|.+++|++.|++.|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++..+........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875432211 234689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..++..+++.+..++||.+...+...+..+++|||+||++|++++.... ..|+++.+||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~---~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA---VKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC---cccccceEEEeecH
Confidence 999999999999999999999999999999999999988888899999999999999886542 57889999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHH
Q 001262 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|+|++++|...+..++..++..+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+...+..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877666666778888777766666555555
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEE
Q 001262 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++.. ....++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|
T Consensus 239 l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 4443 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001262 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 787 I~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|||++|.++.+|+||+||+||+|..|.|++|++..+...+..|.+.|...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988888888877543
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-59 Score=513.97 Aligned_cols=368 Identities=34% Similarity=0.580 Sum_probs=322.9
Q ss_pred CCcccccccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCC
Q 001262 463 PKPIKTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDG 540 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~ 540 (1112)
|-.-..|..+||++.+...|+ .++|..||.+|.++||.|+.|+|++|-++||||||++|++|++++|....+. ....|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 344467999999999999998 5999999999999999999999999999999999999999999999876443 34579
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCce
Q 001262 541 PVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+.+||||||||||.|+|+.+.++.+.+. |..+.+.||.........|.+|++|+|+|||+|+|+|.+. ..+.++++.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~LR 289 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRLR 289 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeeee
Confidence 9999999999999999999999988764 4556788999998889999999999999999999999764 346678899
Q ss_pred EEEeccchhhhcCCCchhHHHHHHhcC-------------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecC------
Q 001262 620 YLVMDEADRMFDMGFEPQITRIVQNIR-------------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 620 ~vViDEah~~~~~~f~~~i~~il~~~~-------------~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~------ 680 (1112)
+|||||||+++++||...|..|+..+. +..|.+|+|||+...+..|+...|.+|+.|..+.
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 999999999999999999999998772 2478999999999999999999999999887221
Q ss_pred -------------------ccccccCceEEEEecccchhHHHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhc-
Q 001262 681 -------------------RSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH- 737 (1112)
Q Consensus 681 -------------------~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~- 737 (1112)
...++..+.|.+.+++..-++..|..+|.... ...++|||+.+.+.++.-+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 02234457788888998888888888887654 3458999999999999888877653
Q ss_pred ---------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHH
Q 001262 738 ---------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 738 ---------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~ 796 (1112)
+..++-+||+|.|++|..+++.|......||+||||++||||+|+|.+||.||+|.+.+
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 35688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccCCCCccEEEEEecCCccCchHHHHHH
Q 001262 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~ 832 (1112)
+|+||||||+|+|.+|.+++|+.+.+..++..|.+.
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999988765555443
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.2e-58 Score=548.05 Aligned_cols=359 Identities=36% Similarity=0.617 Sum_probs=328.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|..++|++.+++.|..+||..|||+|.+|||.++.|+|+|++||||||||++|++|++.++... ..++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987542 235789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|||++||.|++..+..++..+ ++.+..++||.+...++..+..+++|+||||++|.+++.... ..+.++++|||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~lViDE 155 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT---LDLDALNTLVLDE 155 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC---ccHHHCCEEEEEC
Confidence 999999999999999988765 789999999999999999999999999999999999987643 5688999999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHH
Q 001262 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+|++++|...+..++..+++.+|+|+||||+|+.+..++..++.+|..+.+.... ....+.+.+.......++..|.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876544 3445777777777777888888
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||++++
T Consensus 235 ~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLH-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHh-cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 77764 34578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||++|.++..|+||+|||||+|..|.||+|+++.+...+..|.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999888777777776654
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-59 Score=513.76 Aligned_cols=373 Identities=32% Similarity=0.528 Sum_probs=326.8
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCC------
Q 001262 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV------ 535 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~------ 535 (1112)
+..++.|.+|+|+..++.+|..+||..||+||.-.||+++.| .|+|+.|.||||||++|.+||+..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 566889999999999999999999999999999999999999 7999999999999999999999854432111
Q ss_pred --CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCcc
Q 001262 536 --AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 536 --~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~ 613 (1112)
.....|.+||++|||+||.|+...|..++...++++..++||.....|-.-|...++|||+|||+|+.++...+..+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 111234599999999999999999999999999999999999999999999998899999999999999998887778
Q ss_pred ccCCceEEEeccchhhhcCCCchhHHHHHHhcC-----CCCcEEEEeccccH---------------------HHHHHHH
Q 001262 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-----PDRQTVLFSATFPR---------------------QVEILAR 667 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~-----~~~q~il~SAT~~~---------------------~~~~l~~ 667 (1112)
+|..+.+|||||||||+..|+...+..|+..+. ..+|+++||||++- .++.++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 899999999999999999999999999988775 45899999999752 1333443
Q ss_pred H--hcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001262 668 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 668 ~--~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ih 745 (1112)
. |...|..|.+.....+...+....+.|+...|-.+|+.+|..+ +|++|||||++..+..|+.+|...+++.+.||
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 3 3356666666655555555555555667677777777666654 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCc
Q 001262 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
+.|.|.+|.+.++.|++....|||||+||+||||||+|.+||||-.|.+.+.|+||.|||+|++..|..+.|+.|.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcc
Q 001262 826 SPDLVKALELSE 837 (1112)
Q Consensus 826 ~~~i~~~l~~~~ 837 (1112)
+..|++-|....
T Consensus 575 ~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 575 LKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHhhcc
Confidence 999999987654
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.7e-56 Score=531.80 Aligned_cols=362 Identities=36% Similarity=0.586 Sum_probs=324.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|++++|++.+++.|..+||..||++|.++||.++.|+|+|+++|||+|||++|++|++.++...+.. ...++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999998765322 23357899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001262 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++||.|++..+..++..+++.+..++||.....+...+..+++|||+||++|++++.... +.+.++.+|||||||
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah 157 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEAD 157 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHH
Confidence 99999999999999999999999999999999998888888889999999999999987643 567889999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCcEEEEeccccH-HHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc-chhHHHHH
Q 001262 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLL 705 (1112)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~-~~k~~~ll 705 (1112)
+|++++|...+..+...++...|+++||||++. .+..++..++.+|+.+.+.........+.+.+...+. ..+...|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999985 5788999999999988877666666677777666554 44555555
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.. ...+++||||+++..|+.|+..|...++.+..+||+|++.+|..++..|++|.++|||||+++++|||||++++
T Consensus 238 ~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 55543 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHh
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
||||++|.+...|+||+||+||+|..|.|++|++..|...+..|.+++.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888877777766553
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-57 Score=489.71 Aligned_cols=367 Identities=31% Similarity=0.519 Sum_probs=332.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LI 545 (1112)
.+|++|||.+.|++++.++||.+||-||..|||.++.|+|+++.|.||||||.+|++|+++.|+..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 3445899999
Q ss_pred EccchhHHHHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEe
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
|+||++||.|+|..+.++....+ ++++-+....+....-..|...++|||+||+.|+.++.... +..+..++++||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEe
Confidence 99999999999999999877653 56666666666666667777889999999999999987643 367889999999
Q ss_pred ccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcccc-ccCceEEEEecccchhHH
Q 001262 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~-~~~i~q~~~~~~~~~k~~ 702 (1112)
||||.|+..||...+..+..++++..|+++||||+..++..+-..+|++|+.+.+.....+ ...+.|++..+.+.+|+.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999998888766554 456888888899999999
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC----------
Q 001262 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS---------- 772 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~---------- 772 (1112)
.++.+|.-..-.|++|||+|++..|..|.-+|...|+..+++.|.||...|..+++.|..|-++|||||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 9999998777789999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------cccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchH
Q 001262 773 -------------------------VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 773 -------------------------v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~ 827 (1112)
-++||||+.+|.+|||||+|.+...|+||+|||+|++++|.+++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 1458999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHhh
Q 001262 828 DLVKALEL 835 (1112)
Q Consensus 828 ~i~~~l~~ 835 (1112)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 66666654
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.1e-55 Score=523.53 Aligned_cols=370 Identities=35% Similarity=0.580 Sum_probs=330.7
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC--CCCC
Q 001262 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA--GDGP 541 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~--~~~~ 541 (1112)
.....|..++|++.|++.|..+||..||++|.++|+.++.|+|+|++++||||||++|++|++..+...+.... ...+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34468999999999999999999999999999999999999999999999999999999999999876542211 1257
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001262 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
++|||+||++||.|++..+..++..+++.+.+++||.....+...+.. .++|||+||++|++++... ...|+++.+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 999999999999999999999999999999999999988888777754 5899999999999887653 357889999
Q ss_pred EEeccchhhhcCCCchhHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc
Q 001262 621 LVMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 698 (1112)
|||||||++++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+......
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 999999999999999999999998854 579999999999999999999999998887776666666777777777777
Q ss_pred hhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001262 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
.+...|..++.. ....++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++||
T Consensus 321 ~k~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 321 DKYKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred hHHHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 777777766654 2346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001262 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 779 Di~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||+++++||+|++|.+...|+||+||+||.|..|.+|+|++..|..++..+.+.+....
T Consensus 400 Di~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred cccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999998888888888887654
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.7e-53 Score=498.52 Aligned_cols=368 Identities=33% Similarity=0.570 Sum_probs=324.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.|+|+|+++|||||||++|++|++.++... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2467899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.|++..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..++++++||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViD 177 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILD 177 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEe
Confidence 99999999999999999999888899999999998888888888889999999999999887543 468899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc-hhHHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLR 703 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~-~k~~~ 703 (1112)
|||++++.+|...+..++..+++..|+|+||||+|+.+..+...++.+|..+.+.........+.+.+...... .+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777665555555666666555432 34444
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC
Q 001262 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 258 l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 258 LCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 4444433 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001262 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 784 ~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
++||+|++|.+...|+||+||+||.|..|.|++|+++.+...+..+.+.+.......|
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999999888888887777665444443
No 30
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-54 Score=463.74 Aligned_cols=363 Identities=33% Similarity=0.553 Sum_probs=342.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
-.+|..+||+..++++|.+.||..|||||+..||.||.++|++..+.||||||.||++||++++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 35799999999999999999999999999999999999999999999999999999999999988742 35789999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+.||++||.|..+.++.+++..++++++++||....+|+..|..++|||++|||+++.+.... ...|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 999999999999999999999999999999999999999999999999999999997765432 25688999999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHH
Q 001262 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++.|||.+++..++..++.++|+++||||+|+.+..+++..+.+|+.+.+.....++..+...+..+...+|...|+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888999999999
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.......++||||.+..+++.+...|...|+.+..|+|.|++.-|...+..|..++..+||.|++++||+|||.++.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
|||||+|.+...|+||+||+.|+|+.|++|.|+.+.+..++.+|.-.|..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999888887755
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-53 Score=446.36 Aligned_cols=372 Identities=31% Similarity=0.529 Sum_probs=322.6
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001262 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
-.+++|.+|+|.+.+++.|..++|.+|+.||..|+|.+|.. +++|.++..|+|||.+|.|.||..+.-. ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45678999999999999999999999999999999999976 7899999999999999999999876542 2468
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001262 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+++.|+|||+||.|+.+.+.+.++..++.+...+.|.... .-..+ ..+|+|+|||.+.+++..- +..++..+.++
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~kl--k~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKL--KCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHH--HhhChhhceEE
Confidence 9999999999999999999999998888888777765111 00011 1489999999999998652 44678899999
Q ss_pred EeccchhhhcC-CCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc-ch
Q 001262 622 VMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~~-~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
|+||||.|++. ||.++-..|...++++.|+|+||||+...+..|+..++.++..+.+........+|.|++..|.. .+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999998875 69999999999999999999999999999999999999999999999999999999998877765 57
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001262 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
|+..|.. |.....-|+.||||.++..+..|+..|...|+.+.++||.|...+|..++..|+.|..+|||+|+|++||||
T Consensus 317 K~~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 317 KYQALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred HHHHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 8888777 444456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCC------CHHHHHHHHccccCCCCccEEEEEecCC-ccCchHHHHHHHhhcc-CCCChhHHH
Q 001262 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSE-QVVPDDLKA 846 (1112)
Q Consensus 780 i~~v~~VI~~~~p~------s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~~~~~i~~~l~~~~-~~vp~~l~~ 846 (1112)
++.|++|||||+|. +++.|+||||||||.|++|.+|.|+... ....+..|.+..+... ...|.++.+
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 99999999999997 5899999999999999999999999754 4445557777765443 334554443
No 32
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-53 Score=474.92 Aligned_cols=402 Identities=33% Similarity=0.547 Sum_probs=349.5
Q ss_pred HHHHHHhhcCceeccCCCCCccccccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001262 445 EVSAYRKQLELKIHGKDVPKPIKTWHQ----TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~v~~~~~p~pi~~~~~----~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.....|+.+.+.+.|.++|+|+.+|.+ +..+..|++.+...+|..|+|+|.+|||.++.+++++.|+|||||||++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 355678888899999999999999997 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh--hhcCceEEEEeCCCChH-HHHHHHhcCCeEEEeC
Q 001262 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA--KVMGVRCVPVYGGSGVA-QQISELKRGTEIVVCT 597 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~--~~~~i~~~~~~gg~~~~-~~~~~l~~g~~IiV~T 597 (1112)
|++|++.+|..........|-+++|+.||++||.|++.++.++. ...++++.......... .........++|+|+|
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~T 269 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIST 269 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcC
Confidence 99999999987543333457899999999999999999999998 55555554433221111 1111122347999999
Q ss_pred chHHHHHHHhcCCCccccCCceEEEeccchhhhcC-CCchhHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001262 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 598 p~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-~f~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~ 675 (1112)
|-+|..++.... -..+|..+.++|+||||++++. .|..++..|+..+. ++..+-+||||++..++.++...+.+++.
T Consensus 270 P~ri~~~~~~~~-~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 270 PMRIVGLLGLGK-LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred HHHHHHHhcCCC-ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 999998886542 2247899999999999999998 89999999988774 56677899999999999999999999999
Q ss_pred EEecCccccccCceEEEEe-cccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCeeeecCCCCHHHH
Q 001262 676 IQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDR 753 (1112)
Q Consensus 676 i~~~~~~~~~~~i~q~~~~-~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L-~~~~~~~~~ihg~~~~~~R 753 (1112)
+.++..+.....|.|-..+ .....|+..+..++.... ..++|||+.+.+.|..|+..| .-.++++.+|||..++.+|
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 9999988888888876554 456688888888888754 469999999999999999999 6678999999999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHH
Q 001262 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l 833 (1112)
..+++.|+.|++.|||||++++||||+.++++|||||+|.+...|+|||||+||+|+.|.||+||+..|..++..|...+
T Consensus 428 de~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCChhHHHHH
Q 001262 834 ELSEQVVPDDLKALA 848 (1112)
Q Consensus 834 ~~~~~~vp~~l~~~~ 848 (1112)
..++.+||+++..|.
T Consensus 508 ~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 508 EQSGCEVPEKIMGIK 522 (593)
T ss_pred HHcCCcchHHHHhhh
Confidence 999999999876554
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-53 Score=452.17 Aligned_cols=368 Identities=34% Similarity=0.580 Sum_probs=340.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+.+|++++|++.|+..|...||.+|+.||+.||+.+..|.|+++.+++|+|||.+|+++++.++.. .....++||
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 358999999999999999999999999999999999999999999999999999999999988743 123568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
++|||+||.|+......++..+++++..++||.....+...+.. +++|+|+|||++.+++... ....+.+.++|+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLD 176 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeec
Confidence 99999999999999999999999999999999998866655554 6899999999999999654 2456779999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|+..||..++..|+.+++++.|+++||||+|.++..+...|+.+|+.+.+.........+.|++.......|+..|
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999998877777788888
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001262 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+.. ...+.+||||+...+..|...|..+++.+..+||.|.+.+|..++..|+.|..+|||.|+.+++||||..+.
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 88887 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001262 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 785 ~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
+||||++|...++|+||+||+||.|.+|.++.|++..+...+.++.+++.......|...
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 999999999999999999999999999999999999999999999999887766677544
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-51 Score=460.36 Aligned_cols=351 Identities=30% Similarity=0.510 Sum_probs=316.1
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001262 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
|.-...|+++.|...++..|+..+|..||+||..|||+++++.|+||++..|+|||++|.+.++..+.. ....++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~q 95 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHIQ 95 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcce
Confidence 555678999999999999999999999999999999999999999999999999999999888876543 235789
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001262 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+|||+||.||...+.+++..| |++|...+||+....+...|+. |.|+|+|||+|..++... .++..++.++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~---~~n~s~vrlf 171 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG---AMNMSHVRLF 171 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc---CCCccceeEE
Confidence 9999999999999999999999864 8999999999999988888776 899999999999998764 4788999999
Q ss_pred EeccchhhhcCC-CchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc--
Q 001262 622 VMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-- 698 (1112)
Q Consensus 622 ViDEah~~~~~~-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~-- 698 (1112)
||||||.|++.+ |...|..|+..++..+|++.||||.|..+..++.+||.+|..|...........|.|++......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc
Confidence 999999999854 99999999999999999999999999999999999999999999888888888899988665432
Q ss_pred ------hhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 699 ------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 699 ------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
.|+..|-.++.. ++-.+.||||+.+..|+-++.+|...|+.|.+|.|.|.|.+|..++..+++-.++|||+|+
T Consensus 252 sveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred hHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 133344444433 3456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
.-+||||-++|++|||.|+|.+.++|.|||||+||.|..|.+++|+.....
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999976543
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-49 Score=432.75 Aligned_cols=354 Identities=29% Similarity=0.492 Sum_probs=292.6
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001262 475 TSKIMETIRKLNYEKPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...+.+.|.++++...+|+|.+.+|+++ .++|++|.||||||||++|.+|+++.+...+- +.-+|||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEE
Confidence 3445667899999999999999999996 26899999999999999999999998876532 3468999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-----CeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001262 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-----TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g-----~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|+||++|+.|++.+|..++...|+.|+.+.|..+.......|... .+|+|+|||||.++|... +-++|+++.|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 999999999999999999999999988888888777776666542 389999999999999753 4478999999
Q ss_pred EEeccchhhhcCCC---chhHHHHHHhc-------------------------------CCCCcEEEEeccccHHHHHHH
Q 001262 621 LVMDEADRMFDMGF---EPQITRIVQNI-------------------------------RPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 621 vViDEah~~~~~~f---~~~i~~il~~~-------------------------------~~~~q~il~SAT~~~~~~~l~ 666 (1112)
+||||||||++..| .+.++..+... .+..+.++||||+......+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 99999999987543 33333332211 222357899999988778888
Q ss_pred HHhcCCCeEEEec----CccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHH----hcC
Q 001262 667 RKVLNKPVEIQVG----GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL----KHG 738 (1112)
Q Consensus 667 ~~~l~~p~~i~~~----~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~----~~~ 738 (1112)
..-++.|-.+.+. +.-..+..+.+...+.....+...+..+|..+ ...++|||+++...+..|+..|. ..+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 8888888444433 33344455555555666556667777777653 45699999999999999999887 235
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe
Q 001262 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
+.+-.+.|++....|...+..|..|.+.|||||++++||+||.+++.|||||+|.+...|+||+|||+|+|+.|.||+++
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll 537 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLL 537 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEee
Confidence 67777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCchHHHHHHHhh
Q 001262 819 SEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 819 ~~~d~~~~~~i~~~l~~ 835 (1112)
+..+...+..+++....
T Consensus 538 ~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccchHHHHHHHHhcc
Confidence 99999998888887654
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.6e-48 Score=481.26 Aligned_cols=348 Identities=19% Similarity=0.255 Sum_probs=276.7
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001262 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|++.|.+.|..+||..||++|.++||.++.|+|+|+++|||||||++|++|++..+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 36789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCCccccCCceEEEeccchhhhc
Q 001262 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..+..+. ..++++..+.|+++. .+...+..+++|||+||++|...+.. ...+...|+++.+|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 457888777777664 44466777899999999998754322 111223478999999999999876
Q ss_pred CCCchhHHHHHHh-------cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc-------
Q 001262 632 MGFEPQITRIVQN-------IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------- 697 (1112)
Q Consensus 632 ~~f~~~i~~il~~-------~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~------- 697 (1112)
.|..++..++.. .+..+|+|+||||+++... ++..+++.|+.+ +.....+.... +++.+.+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~-~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGAR-TVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCce-EEEEecCCccccccc
Confidence 377766555544 3567899999999998765 677788888654 33222222222 22211111
Q ss_pred ----------chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCCeeeecCCCCHHHHHHHHHH
Q 001262 698 ----------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISD 759 (1112)
Q Consensus 698 ----------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~R~~~~~~ 759 (1112)
..+...+..++. ...++||||+|+..|+.++..|... +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 122333333333 2569999999999999999998764 5678999999999999999999
Q ss_pred hhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC--CccCchHHHHHHHhh
Q 001262 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE--EDAKYSPDLVKALEL 835 (1112)
Q Consensus 760 F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~--~d~~~~~~i~~~l~~ 835 (1112)
|++|+++|||||+++++||||+++++||||++|.+...|+||+|||||.|+.|.+++|++. .|..++..+.+.+..
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999873 455555555555543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.9e-47 Score=463.08 Aligned_cols=344 Identities=20% Similarity=0.309 Sum_probs=269.6
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 468 TWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~--~~l~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.. +.....+...++. +||..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4664 5555667666664 99999999999999999999999999999999999999999853 35799
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh------cCCeEEEeCchHHHH--HHHhcCCCccccC
Q 001262 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK------RGTEIVVCTPGRMID--ILCTSGGKITNLR 616 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~g~~IiV~Tp~~L~~--~l~~~~~~~~~l~ 616 (1112)
||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+......+....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999854343333 5899999999998877654443 357999999999852 2221111112234
Q ss_pred CceEEEeccchhhhcCC--CchhHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe-EEEecCccccccCceEE
Q 001262 617 RVTYLVMDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVLNKPV-EIQVGGRSVVNKDITQL 691 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~-~i~~~~~~~~~~~i~q~ 691 (1112)
.+.+|||||||+|++|| |.+.+..+ +...-+..++++||||++..+...+...+.... .+.. .++...++...
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr--~Sf~RpNL~y~ 658 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR--QSFNRPNLWYS 658 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee--cccCccceEEE
Confidence 58999999999999998 77776653 455557889999999999988776665554321 1222 12333344322
Q ss_pred EEecccch-hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001262 692 VEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 692 ~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
+..... .+..+..+|.........||||.++..|+.|+..|...|+.+..|||+|++.+|..+++.|..|.++||||
T Consensus 659 --Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 659 --VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred --EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 222222 23455666654444568899999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
|+++++|||+|+|++||||++|.+++.|+|++|||||.|..|.|++||+..|...+..++
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987765555444
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.5e-46 Score=461.85 Aligned_cols=369 Identities=19% Similarity=0.213 Sum_probs=286.2
Q ss_pred CHHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 475 TSKIMETI-RKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 475 ~~~l~~~l-~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+..+...+ ..++| .|||+|.+||+.|+.+ +|+|++|+||||||++|++|++..+.. +++++|||
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 34444444 45788 5999999999999975 799999999999999999999988753 57899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEe
Q 001262 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||++||.|++..|.+++..+++++..++|+.+..++ +..+..| ++|||+||..| . ....++++++|||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~----~~v~f~~L~llVI 579 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q----KDVKFKDLGLLII 579 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h----CCCCcccCCEEEe
Confidence 999999999999999998899999999988775443 3445554 89999999532 2 1246789999999
Q ss_pred ccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHH
Q 001262 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||+|++ .......+..++...|+|+||||+++....++...+.++..+..... ....+.+.+.......-...
T Consensus 580 DEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~~~i~~~ 652 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDPELVREA 652 (926)
T ss_pred eccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCHHHHHHH
Confidence 999993 44556677788888999999999877766666666667765543322 12234433322211111112
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
++.....+++++|||+++..++.++..|... ++.|..+||+|++.+|..++..|.+|+++|||||+++++|||||
T Consensus 653 ---i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 653 ---IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred ---HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 2223335689999999999999999999885 78999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCC-CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhh
Q 001262 782 ELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLE 860 (1112)
Q Consensus 782 ~v~~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~ 860 (1112)
++++||++++|. ....|+||+||+||.|+.|.||+|+...... ...-.+.| ..+. +
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l-~~~~~~RL-----------~~~~--------~--- 786 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKAL-TEDAQKRL-----------EAIQ--------E--- 786 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccC-CHHHHHHH-----------HHHH--------H---
Confidence 999999999986 5779999999999999999999998764421 11111111 1111 1
Q ss_pred hccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001262 861 QAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 861 ~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..--|.||.+++.|+++||+|+.+|..|+|+-.
T Consensus 787 ----~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~~ 819 (926)
T TIGR00580 787 ----FSELGAGFKIALHDLEIRGAGNLLGEEQSGHIE 819 (926)
T ss_pred ----hhcchhhHHHHHHHHHhcCCcCCCCCcccCchh
Confidence 112378999999999999999999999999743
No 39
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=430.56 Aligned_cols=496 Identities=21% Similarity=0.266 Sum_probs=377.8
Q ss_pred CCCCcccCcCCCCCccCCcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChh
Q 001262 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLP 326 (1112)
Q Consensus 247 ~~r~~~~~~e~~ed~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~ 326 (1112)
.+|+||+.+|+.|+.+|||...+. + ...-+....++.|++.|++++|.+||++..-++.+ .|... .+.
T Consensus 168 edR~WYdnde~~d~~~npf~~~~~-----E----~~l~~~~~ki~~dn~~we~nrl~~sgvv~~~e~~~--~f~~~-e~~ 235 (1042)
T KOG0924|consen 168 EDREWYDNDEGGDEVHNPFSELSR-----E----AELLEKIQKINNDNALWETNRLLTSGVVQRMEVIS--DFLSD-EAR 235 (1042)
T ss_pred cchhhhhcCCccccccCchhcchh-----H----HHHHHHHHhhcchhhhhhhhcccchhhhhcccccC--ccchh-hHH
Confidence 369999999999999999976431 1 01112233489999999999999999999877775 45444 333
Q ss_pred hHHhhhccCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHH
Q 001262 327 EVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRV 406 (1112)
Q Consensus 327 ~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~ 406 (1112)
+ +|||+++|+|+||+.+++||..+ +++..|.++|++..+..++.+ ++..
T Consensus 236 ~--llv~~i~~~fld~r~~~~k~~~~---------------------v~pv~d~~sd~a~~a~~gs~l--------v~~~ 284 (1042)
T KOG0924|consen 236 E--LLVHNIVPPFLDGREVFTKQAEP---------------------VIPVRDPTSDLAISARRGSKL--------VRER 284 (1042)
T ss_pred H--hhhhcccCCccccceeeeccccc---------------------ccccCCCchhhhhhhhccccH--------HHHH
Confidence 3 99999999999999999999887 999999999999999988876 7777
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHhhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001262 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~ 486 (1112)
+.+.....+..+||++.++.+++.+..+.+.- +..-..|+....+..+.... .....|.. ... ......
T Consensus 285 r~~~~~~k~~~~~~~~~~~~lgn~~glek~~~----ed~~~~~~~~~~~a~h~k~~-~a~~~fa~---~k~---i~eqrq 353 (1042)
T KOG0924|consen 285 REKEERKKAQKKHWKLAGTALGNVMGLEKKND----EDGKVAYRGSVKFASHMKKS-EAVSEFAS---KKS---IREQRQ 353 (1042)
T ss_pred HHhhhhhhhhhhhhhhcchhhccccccccCcc----cccccccccchhhhhccccc-cccccccc---cch---HHHHHh
Confidence 77777788889999999999999988765432 11111222222111221110 01111211 111 123355
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHh
Q 001262 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~ 564 (1112)
|...+.++.+.+..|..++-+||+|+||||||++....++.. |.+..++|.| |.|..|+. +++.+.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed---------GY~~~GmIGcTQPRRvAAiS---VAkrVa 421 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED---------GYADNGMIGCTQPRRVAAIS---VAKRVA 421 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc---------ccccCCeeeecCchHHHHHH---HHHHHH
Confidence 666778899999999999999999999999999866555532 4444456666 99998884 556677
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~ 643 (1112)
..++....+-+|++..++++.. ..+.|-++|.|.|+...... .+|..+++||||||| |.++.+....+.+.+.
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~l 495 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVL 495 (1042)
T ss_pred HHhCCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHH
Confidence 7888888899999888887765 55899999999998766543 478999999999999 8888888888888888
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhh---hcCCeEEEE
Q 001262 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW---YEKGKILIF 720 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~---~~~~~vLIF 720 (1112)
.-+.+..+|++|||| +.+.|+..|.+-|. +++.++.++... .+...+..+.+...+...... ...|.+|||
T Consensus 496 arRrdlKliVtSATm--~a~kf~nfFgn~p~-f~IpGRTyPV~~---~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIf 569 (1042)
T KOG0924|consen 496 ARRRDLKLIVTSATM--DAQKFSNFFGNCPQ-FTIPGRTYPVEI---MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIF 569 (1042)
T ss_pred HhhccceEEEeeccc--cHHHHHHHhCCCce-eeecCCccceEE---EeccCchHHHHHHHHhhheEeeccCCCCCEEEe
Confidence 888999999999999 67788887776666 566666665432 233334445555544443332 245799999
Q ss_pred eCCHHHHHHHHHHHHhc----------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeC
Q 001262 721 VHSQEKCDALFRDLLKH----------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790 (1112)
Q Consensus 721 ~~s~~~~~~l~~~L~~~----------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~ 790 (1112)
++.++.++..+..+... ++.++.|++.||+..+.++++....|..+|||||++|+..|.||++.+||+.+
T Consensus 570 mtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 570 MTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTG 649 (1042)
T ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecC
Confidence 99999887777666542 67899999999999999999999999999999999999999999999999854
Q ss_pred C------------------CCCHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 791 A------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 791 ~------------------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
+ |.|.+...||.|||||+| +|+||.+||..
T Consensus 650 y~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 650 YCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 4 667888899999999998 99999999974
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.7e-45 Score=468.51 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=287.5
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001262 477 KIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
........++| .||++|.+||+.++.+ +|+|++|+||||||.+|+++++..+. .++++||||||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~ 659 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcH
Confidence 34455677898 7999999999999987 89999999999999999988887653 378899999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH---h-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL---K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||.|++..|..++..+++.+.+++|+.+..++...+ . ..++|||+||+.|. . ...+.++++|||||+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~----~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S----DVKWKDLGLLIVDEE 731 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C----CCCHhhCCEEEEech
Confidence 9999999999998888889999999998887775443 3 35899999997432 1 145778999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHH
Q 001262 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|+| |+ ....++..++.+.|+|+||||+++.+..++...+.++..+...... ...+.+.+....... ....
T Consensus 732 hrf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~---~k~~ 801 (1147)
T PRK10689 732 HRF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLV---VREA 801 (1147)
T ss_pred hhc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHH---HHHH
Confidence 996 33 3356677888899999999999888878888888888766543321 123444333222211 1122
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001262 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
++..+..+++++||||++..++.++..|... ++.+..+||+|++.+|..++..|.+|+++|||||+++++|||||+++
T Consensus 802 il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3334445689999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC-CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhhcc
Q 001262 785 LVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAH 863 (1112)
Q Consensus 785 ~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~ 863 (1112)
+||+++... +...|+|++||+||.|+.|.||+++..... ....-.+-| ..+..
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~-~~~~~~~rl-------------------~~~~~------ 935 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA-MTTDAQKRL-------------------EAIAS------ 935 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcc-cCHHHHHHH-------------------HHHHH------
Confidence 999665543 567899999999999999999987754321 111111111 11111
Q ss_pred CCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001262 864 GTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 864 ~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..--|.||.+++.|+++||+|+.+|..|+|+-.
T Consensus 936 -~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~ 968 (1147)
T PRK10689 936 -LEDLGAGFALATHDLEIRGAGELLGEEQSGQME 968 (1147)
T ss_pred -hcCCcchHHHHHHHHHhcCCccCCCCccCCCcc
Confidence 122478999999999999999999999999743
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-45 Score=434.23 Aligned_cols=328 Identities=20% Similarity=0.341 Sum_probs=260.4
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||..|+|+|.++|+.++.|+|+|+++|||||||++|++|++.. +..+|||+||++|+.|+...+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH-
Confidence 589999999999999999999999999999999999999999842 45789999999999998887764
Q ss_pred hhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC--Cchh
Q 001262 564 AKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQ 637 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~--f~~~ 637 (1112)
+++.+..+.++....++. ..+.. ..+|+|+||++|........ .+..+.++.+|||||||++++|| |.+.
T Consensus 74 ---~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 ---SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 578888888777655432 23333 47999999998753210000 01146789999999999999987 6666
Q ss_pred HHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc
Q 001262 638 ITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 638 i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
+..+ +....++.++++||||+++.+...+...+ .+|..+.. ++...++...+. ......+..++.+|.....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~-~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR-RKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE-eCCccHHHHHHHHHHHhcC
Confidence 6554 33344778999999999998766555554 34543322 222233332222 1222455667777765445
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~ 793 (1112)
...+||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++||||++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHH
Q 001262 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988776666554
No 42
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.4e-44 Score=440.39 Aligned_cols=361 Identities=18% Similarity=0.258 Sum_probs=274.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001262 479 METIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
...+..++| .||++|.++|+.|+.+ .++|++|+||||||++|++|++..+. +|.++|||+||++|
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~L 322 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHH
Confidence 344556888 6999999999999877 48999999999999999999998764 37889999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh
Q 001262 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|.|++..+.+++..+++++.+++|+....+ ++..+..| ++||||||+.|.+. ..+.++++|||||+|+
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEechhh
Confidence 999999999999999999999999998543 44555554 89999999977432 3578899999999999
Q ss_pred hhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHH
Q 001262 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708 (1112)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l 708 (1112)
+. ......+.......++|+||||+.+....+. .+.+.....+...+.....+.+.+... .....++..+
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~---~~~~~~~~~i 464 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPD---SRRDEVYERI 464 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCc---ccHHHHHHHH
Confidence 53 2333444445556899999999876544333 233322222222222233344433322 2233444444
Q ss_pred hhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001262 709 GEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 709 ~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
.... ...+++|||+.+ ..+..++..|... ++.|..+||+|++.+|..+++.|++|..+|||||+++++|
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 4433 356999999964 3456677777765 5789999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCC-HHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHh
Q 001262 778 LDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN 856 (1112)
Q Consensus 778 lDi~~v~~VI~~~~p~s-~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~ 856 (1112)
||||++++||+|++|.. ...|.|++||+||.|..|.||+|+...........++.+..
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~--------------------- 603 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE--------------------- 603 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH---------------------
Confidence 99999999999999985 67788899999999999999999963322212222222211
Q ss_pred hhhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCCC
Q 001262 857 QGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEED 898 (1112)
Q Consensus 857 ~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~ 898 (1112)
...||.+++.|+++|+.|+.+|.+|+|+++-
T Consensus 604 -----------~~dgf~iae~dl~~rg~g~~~g~~q~g~~~~ 634 (681)
T PRK10917 604 -----------TNDGFVIAEKDLELRGPGELLGTRQSGLPEF 634 (681)
T ss_pred -----------hcchHHHHHHhHhhCCCccccCceecCCCCe
Confidence 1368999999999999999999999997653
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.2e-43 Score=430.43 Aligned_cols=331 Identities=21% Similarity=0.336 Sum_probs=259.4
Q ss_pred HHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001262 476 SKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 476 ~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
......|+ .+||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 33344554 389999999999999999999999999999999999999999853 346899999999999
Q ss_pred HHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh
Q 001262 555 QIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 555 Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|+...+.. +|+.+.++.++........ .+.. ..+|+|+||++|....... .....++++|||||||+++
T Consensus 80 dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 80 DQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeCccccc
Confidence 98887765 4788888888777665433 2333 3689999999986321111 1234578999999999999
Q ss_pred cCC--CchhHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001262 631 DMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 631 ~~~--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
+|| |.+.+..+ +....++.++|+||||++..+...+...+ .+|..+ +.. +...++. +.+.........+
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl~--~~v~~~~~~~~~l 227 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YTLVEKFKPLDQL 227 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcce--eeeeeccchHHHH
Confidence 987 66665544 23334678999999999988765444443 455432 222 2222332 2222333445556
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001262 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+.++.. ....++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+++++|||+|+|+
T Consensus 228 ~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 666544 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 785 ~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
+||||++|.+.+.|+||+||+||.|..|.|++||++.|...+..++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765544443
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.2e-43 Score=433.65 Aligned_cols=364 Identities=20% Similarity=0.273 Sum_probs=271.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001262 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|..||+.|+.+ .++|++|+||||||++|++|++..+.. |+++|||+||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 344566778999 7999999999999876 368999999999999999999987653 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+.+++..+++++.+++|+..... ++..+.. .++|||+||+.|.+. ..+.++++|||||
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDE 365 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEec
Confidence 999999999999999999999999999987665 3444544 479999999977432 3578899999999
Q ss_pred chhhhcCCCchhHHHHHHhcC--CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHH
Q 001262 626 ADRMFDMGFEPQITRIVQNIR--PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~--~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
+|++... +...++.... ...++|+||||+.+....+. .+.+.....+...+.....+...+. ... ....
T Consensus 366 aH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~--~~~-~~~~ 436 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLI--KHD-EKDI 436 (630)
T ss_pred hhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEe--Ccc-hHHH
Confidence 9985321 2222222222 26789999999766443332 2222111112211221223333332 222 2244
Q ss_pred HHHHHhhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 704 LLELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 704 ll~~l~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
++..+.... .+.+++|||+.. ..+..++..|... ++.|..+||+|++.+|..+++.|++|..+|||||+
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 555555443 456899999976 4566777777653 78899999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEeCCCC-CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHH
Q 001262 773 VAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~ 851 (1112)
++++|||+|++++||+|++|. ....|.|++||+||.|..|.||+++...........++.+.
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~----------------- 579 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMA----------------- 579 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHH-----------------
Confidence 999999999999999999997 57778889999999999999999984322211111111110
Q ss_pred HHHHhhhhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001262 852 MAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 852 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
. ..+||.+++.|+++|+.|+.+|.+|+|++.
T Consensus 580 -----~----------~~dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 580 -----D----------TLDGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred -----h----------hcccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 0 136899999999999999999999999754
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.9e-43 Score=423.32 Aligned_cols=317 Identities=20% Similarity=0.272 Sum_probs=251.8
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE-EccchhHHHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI-MAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI-l~PtreLa~Q~~~~~~~ 562 (1112)
.||. |||||.++||.++.|+ ++++.+|||||||.+|.++++.. .. ....++.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 6887 9999999999999998 57778999999999776655532 11 123566776 66999999999999999
Q ss_pred Hhhhc-----------------------CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---------
Q 001262 563 FAKVM-----------------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------- 610 (1112)
Q Consensus 563 ~~~~~-----------------------~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~--------- 610 (1112)
+++.+ ++++.+++||.+...|+..+..+++|||+|+. ++.+...
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccc
Confidence 99866 48899999999999999999999999999954 4433211
Q ss_pred ----CccccCCceEEEeccchhhhcCCCchhHHHHHHhc--CCC---CcEEEEeccccHHHHHHHHHhcCCCeEEEecCc
Q 001262 611 ----KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 611 ----~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~--~~~---~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 681 (1112)
..-.|.++++||||||| ++++|...+..|+..+ ++. +|+++||||+|..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 00136889999999999 7899999999999975 332 699999999999888888888888877666555
Q ss_pred cccccCceEEEEecccchhHHHHHHHHhhh--hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH-----
Q 001262 682 SVVNKDITQLVEVRPESDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE----- 754 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~----- 754 (1112)
......+.+.+. .....++..++..+... ...+++||||||+..|+.|+..|...++ ..|||+|++.+|.
T Consensus 239 ~l~a~ki~q~v~-v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLAAKKIVKLVP-PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cccccceEEEEe-cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 555555566433 23334444444433222 2357899999999999999999998876 8999999999999
Q ss_pred HHHHHhhc----CC-------ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCc-cEEEEEecC
Q 001262 755 STISDFKS----NV-------CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISE 820 (1112)
Q Consensus 755 ~~~~~F~~----g~-------~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~-g~~~~~~~~ 820 (1112)
.+++.|++ |. ..|||||+++++||||+. ++||++.+| .+.|+||+||+||.|.. +.++++++.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999987 889988877 68999999999999985 444666643
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-42 Score=437.83 Aligned_cols=343 Identities=22% Similarity=0.311 Sum_probs=254.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC-CCCCCcEEEEccchhH
Q 001262 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA-AGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~-~~~~~~~LIl~PtreL 552 (1112)
|++.+.+.+.. +|..|||+|.+|||.++.|+++|++||||||||++|++|++.++....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 789999999999999999999999999999999999999999887532111 1346889999999999
Q ss_pred HHHHHHHHHH-------Hhh----hc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001262 553 VQQIHSDIRK-------FAK----VM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 553 a~Q~~~~~~~-------~~~----~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+.|++..+.. ++. .+ ++.+.+.+|+++..+....+...++|+||||++|..++.... ....|.++.+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~-~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK-FREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh-HHHHHhcCCE
Confidence 9999886653 221 22 678889999999888877788889999999999987764321 1235789999
Q ss_pred EEeccchhhhcCCCchhHHHHH----HhcCCCCcEEEEeccccHHHHHHHHHhcC-------CCeEEEecCccccccCce
Q 001262 621 LVMDEADRMFDMGFEPQITRIV----QNIRPDRQTVLFSATFPRQVEILARKVLN-------KPVEIQVGGRSVVNKDIT 689 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il----~~~~~~~q~il~SAT~~~~~~~l~~~~l~-------~p~~i~~~~~~~~~~~i~ 689 (1112)
|||||+|.|++..+..++..++ ....+..|+|+||||+++ ...++..+.. .++.+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 9999999999876665554443 333467899999999976 2334433322 122221 11110000111
Q ss_pred EEEE-----ecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHH
Q 001262 690 QLVE-----VRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 690 q~~~-----~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~R~~~~ 757 (1112)
.... ..........++..|.... ..+++||||||+..|+.++..|... +..+.++||+|++.+|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0000 0111112233334443332 3568999999999999999999873 46899999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC-CCccEEEEEecC
Q 001262 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFISE 820 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~-G~~g~~~~~~~~ 820 (1112)
+.|++|.++|||||+++++|||||++++||+|++|.+...|+||+||+||. |..+.+++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999986 434445555443
No 47
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-42 Score=434.42 Aligned_cols=370 Identities=24% Similarity=0.356 Sum_probs=274.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.|.+++|++.+++.|...||..|+|+|.+||+. +++|+++|+++|||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7799999999999999999999999998752 5689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..|..+. .+|+++..++|+...... ....++|+||||+++..++.... ..++++++|||||+
T Consensus 74 ~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~ 146 (737)
T PRK02362 74 VPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEV 146 (737)
T ss_pred eChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECc
Confidence 999999999999999865 358999999998754332 23457999999999988876432 34788999999999
Q ss_pred hhhhcCCCchhHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCC-------CeEEEec--Ccc-ccccCceEEEE
Q 001262 627 DRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNK-------PVEIQVG--GRS-VVNKDITQLVE 693 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~l~~-------p~~i~~~--~~~-~~~~~i~q~~~ 693 (1112)
|.|.+.+++..+..++..+ .+..|+|+||||+++. ..++.++... |+.+..+ ... .....-...+.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 9999988888888776655 5778999999999853 3344333211 2111110 000 00000000000
Q ss_pred ecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------------
Q 001262 694 VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------------ 737 (1112)
Q Consensus 694 ~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------------ 737 (1112)
..........++..+ ..++++||||+++..|+.++..|...
T Consensus 226 ~~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 226 VPSKDDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CccchHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 001111222222222 24679999999999999998888643
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eC-----CCCCHHHHHHHHccccCC
Q 001262 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-----APNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 738 ~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~-----~p~s~~~y~QriGR~gR~ 808 (1112)
...+.++||+|++.+|..++..|++|.++|||||+++++|||+|.+.+||+ |+ .|.+..+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 588999999999999999
Q ss_pred CCc--cEEEEEecCCccCchHHH-HHHHhhccCCCChhH---HHHHHHHHHHHhhh
Q 001262 809 GRK--GCAITFISEEDAKYSPDL-VKALELSEQVVPDDL---KALADSFMAKVNQG 858 (1112)
Q Consensus 809 G~~--g~~~~~~~~~d~~~~~~i-~~~l~~~~~~vp~~l---~~~~~~~~~~~~~~ 858 (1112)
|.. |.||+|+...+. ...+ .+++......+...| ..+...+++.+..+
T Consensus 383 g~d~~G~~ii~~~~~~~--~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~ 436 (737)
T PRK02362 383 GLDPYGEAVLLAKSYDE--LDELFERYIWADPEDVRSKLATEPALRTHVLSTIASG 436 (737)
T ss_pred CCCCCceEEEEecCchh--HHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhC
Confidence 865 899998865432 2222 333332222332333 23555566655444
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5e-42 Score=421.52 Aligned_cols=326 Identities=22% Similarity=0.353 Sum_probs=260.8
Q ss_pred HHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 481 TIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 481 ~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+ .+||..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.|+...
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 499999999999999999999999999999999999999999842 34689999999999998887
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHH---HHh-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC--
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVAQQIS---ELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-- 633 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-- 633 (1112)
+.. +|+.+..+.++....+... .+. ...+|+|+||++|....... .....++++|||||||++.+||
T Consensus 73 l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCc
Confidence 765 4788888888877665432 222 35799999999985432211 1345679999999999999887
Q ss_pred CchhHHHHHHh--cCCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEecCccccccCceEEEEecccchhHHHHHHHHh
Q 001262 634 FEPQITRIVQN--IRPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709 (1112)
Q Consensus 634 f~~~i~~il~~--~~~~~q~il~SAT~~~~~~~l~~~~l~--~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~ 709 (1112)
|.+.+..+... .-+..++|+||||++..+...+..++. ++..+ +. ++...++. +.+.....+...++.+|.
T Consensus 146 frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~--~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLR--FSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcE--EEEEeCCCHHHHHHHHHH
Confidence 66666555332 224556999999999988766666654 33322 21 22223332 233334456667777776
Q ss_pred hhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEe
Q 001262 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 710 ~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
... ..++||||+++..|+.++..|...|+++..+||+|+..+|..+++.|.+|.++|||||+++++|||+|+|++||+|
T Consensus 221 ~~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 221 KHR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred hcC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 533 5689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 790 ~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
++|.+.+.|+|++||+||.|..|.|++||++.|...+..++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999988876555444
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-44 Score=358.48 Aligned_cols=333 Identities=32% Similarity=0.541 Sum_probs=286.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+.|.++-|.+.|+.++-..||..|+.+|.++||..+-|.|+|++|..|.|||.+|.+..|+.|.-- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 568899999999999999999999999999999999999999999999999999999999876432 124578999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001262 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|.||+||.||.++..+|.+++ ++++...+||.++..+...|++.++|+|+|||+++.+.... .++|+++..+||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLDE 193 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehhh
Confidence 999999999999999999987 68899999999999888888888899999999999888764 47899999999999
Q ss_pred chhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcc-ccccCceEEEEecccchhHHH
Q 001262 626 ADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 626 ah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~-~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||.|+. .+.+..+..|+...+...|+++||||++..+.-.+++|+.+|..|.+.... .....+.|++....+..|...
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrk 273 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRK 273 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhh
Confidence 998875 346778899999999999999999999999999999999999998887643 445567777777777777777
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC
Q 001262 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+.++|.. ..-++++||+.+... | . | ..+ ||||++++||+||..+
T Consensus 274 l~dLLd~-LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdierv 317 (387)
T KOG0329|consen 274 LNDLLDV-LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERV 317 (387)
T ss_pred hhhhhhh-hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccc
Confidence 7777654 345799999988765 1 0 3 122 8999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChh
Q 001262 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 784 ~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+.|||||+|.+..+|+||+||+||.|.+|.+|+|++. ++...+..+..........+|+.
T Consensus 318 Ni~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 318 NIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999999999975 56666667766666666666654
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-41 Score=421.60 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=262.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.|.+++|++.+.+.|...||..|+|+|.++|+. +++|+++|+++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577899999999999999999999999999986 7899999999999999999999999998764 25689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..|. .+++++..++|+...... +...++|+|+||+++..++.... ..++++++|||||+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~ 147 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEI 147 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCc
Confidence 999999999999998864 478999999998765432 23458999999999988775432 35788999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcccccc--CceEEEEecccc--hhH-
Q 001262 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK--DITQLVEVRPES--DRF- 701 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~--~i~q~~~~~~~~--~k~- 701 (1112)
|.+.+.++...+..++..+....|+|+||||+++ ...++. |++.+.. .....++... .+.+.+...... .++
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 9999999999999999999999999999999986 355555 4433221 1111111110 011111111111 111
Q ss_pred HHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCeeeecCC
Q 001262 702 LRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLHGA 747 (1112)
Q Consensus 702 ~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~ihg~ 747 (1112)
..+...+.... .++++||||+++..|+.++..|... ...|.++||+
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 11122222211 3579999999999998877666421 2358999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE-------eCCCC-CHHHHHHHHccccCCC--CccEEEEE
Q 001262 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------FDAPN-HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------~~~p~-s~~~y~QriGR~gR~G--~~g~~~~~ 817 (1112)
|++.+|..+++.|++|.++|||||+++++|||+|.+.+||. |+.|. +..+|+||+|||||.| ..|.||+|
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 55544 5679999999999975 57999999
Q ss_pred ecCCc
Q 001262 818 ISEED 822 (1112)
Q Consensus 818 ~~~~d 822 (1112)
++..+
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87644
No 51
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.2e-39 Score=390.19 Aligned_cols=310 Identities=16% Similarity=0.213 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHH---------HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLA---------FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~---------~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+|.++++.++.|+++|++|+||||||++ |++|.+..+.... ....+++++|++||++||.|+...+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999997 4444554432211 122356899999999999999999887
Q ss_pred Hhhh---cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH
Q 001262 563 FAKV---MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 563 ~~~~---~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
.... .++.+.+.+||... .+.....++++|||+|++.. ...|.++++|||||||.+..++ +.+.
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHHH
Confidence 6544 36677888999873 22233334689999998631 1357889999999999887665 4455
Q ss_pred HHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc---------chhHHHHHHHHh
Q 001262 640 RIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---------SDRFLRLLELLG 709 (1112)
Q Consensus 640 ~il~~~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~---------~~k~~~ll~~l~ 709 (1112)
.++..+. ..+|+|+||||++..+..+ ..++++|..+.+.+. ....+.+.+..... ......++..+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 5555443 3469999999999888877 578888888877643 22345554432210 111122334443
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHh-hcCCccEEEecCcccccCCCCCCc
Q 001262 710 EWY--EKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDF-KSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F-~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
... ..+++||||+++..|+.++..|... ++.+..+||+|++. ..++..| ++|+.+|||||++|++|||||+|.
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 322 3468999999999999999999887 79999999999975 4677777 689999999999999999999999
Q ss_pred EEEEeC---CCC---------CHHHHHHHHccccCCCCccEEEEEecCCc
Q 001262 785 LVINFD---APN---------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 785 ~VI~~~---~p~---------s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
+||+++ .|. |.+.|+||+|||||. ++|.||.|+++.+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 565 888999999999999 6999999999876
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-39 Score=401.89 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=253.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|++++|++.+++.+...+|. |+|+|.++++.+.+|+++|+++|||||||++|.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577899999999999999987 999999999999999999999999999999999999988753 46799999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001262 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
|+++||.|++..+.++. .+|+.+..++|+...... +...++|+|+||+++..++.... ..+.++++|||||||
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH 145 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP---YIINDVGLIVADEIH 145 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh---hHHhhcCEEEEecch
Confidence 99999999999999864 468888888887654322 23468999999999988775532 457889999999999
Q ss_pred hhhcCCCchhHHHHHHh---cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcccccc-Cce--EEEEecccchhH
Q 001262 628 RMFDMGFEPQITRIVQN---IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DIT--QLVEVRPESDRF 701 (1112)
Q Consensus 628 ~~~~~~f~~~i~~il~~---~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~-~i~--q~~~~~~~~~k~ 701 (1112)
.+.+.++...+..++.. ++++.|+|+||||+++ ...++.+ ++.+. +.....+.+.. .+. ..+.+.......
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCc-cCCCCCCCCeEEEEEecCeeeeccccccc
Confidence 99988888877777554 4578899999999975 3445543 33221 11111111100 000 000111111111
Q ss_pred HHHHHHHhhh-hcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------CCCeeeecCCCCHHHHHH
Q 001262 702 LRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKH-------------------------GYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 702 ~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~ihg~~~~~~R~~ 755 (1112)
..+..++... ..++++||||+++..|+.++..|... ...+..+||+|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1123333332 24679999999999999999888653 124788999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC---------CCCHHHHHHHHccccCCCC--ccEEEEEecCC
Q 001262 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~---------p~s~~~y~QriGR~gR~G~--~g~~~~~~~~~ 821 (1112)
+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++|+...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999865544 443 5578899999999999984 57788776543
No 53
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7e-39 Score=370.54 Aligned_cols=362 Identities=21% Similarity=0.294 Sum_probs=290.3
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001262 478 IMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+.+.+..+.| +||..|.++|..|... .+-|++|..|||||+++++.|+..+.. |.++.+|+||--
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEI 322 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEI 322 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHH
Confidence 3344567887 6999999999999854 468999999999999999999988654 789999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChH---HHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001262 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||.|++..+.+++..+|+++..++|..... +....+..| .+|||+|+..+.+- ..|+++.+||+||-|
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQH 394 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc--------eeecceeEEEEeccc
Confidence 999999999999999999999999976543 445666676 79999999876554 478899999999999
Q ss_pred hhhcCCCchhHHHHHHhcCC-CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHH
Q 001262 628 RMFDMGFEPQITRIVQNIRP-DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
| |+.+....+..... ...+++||||+-|. .++...+++-....+...+.....|...+... .++..+++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~---~~~~~v~e 464 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH---ERRPEVYE 464 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc---ccHHHHHH
Confidence 9 67777777777777 68999999997544 35566666655445555555555666554432 44555555
Q ss_pred HHhhhh-cCCeEEEEeCCHHH--------HHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001262 707 LLGEWY-EKGKILIFVHSQEK--------CDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~~--------~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.... .+.++.|.|+-+++ +..++..|... ++.+..+||.|+..+++.+|..|++|+++|||||.|++
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 555444 45699999987654 55667777743 57799999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHH-ccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 001262 776 RGLDVKELELVINFDAPNHYEDYVHRV-GRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK 854 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~~p~s~~~y~Qri-GR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~ 854 (1112)
.|||+|+++++|++++-...-.-+|++ ||+||.+.+++|++++.+........-++.+..
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~------------------- 605 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE------------------- 605 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh-------------------
Confidence 999999999999999988766666665 999999999999999987654443333333322
Q ss_pred HhhhhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCCC
Q 001262 855 VNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEED 898 (1112)
Q Consensus 855 ~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~ 898 (1112)
..+||.+++.|+++|++|+.+|.+|+|+++.
T Consensus 606 -------------t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f 636 (677)
T COG1200 606 -------------TTDGFVIAEEDLKLRGPGELLGTRQSGLPEF 636 (677)
T ss_pred -------------cCCcceehhhhHhccCCccccCCcccCCcce
Confidence 2489999999999999999999999998764
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-38 Score=394.75 Aligned_cols=303 Identities=20% Similarity=0.277 Sum_probs=238.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcCceE
Q 001262 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~i~~ 571 (1112)
+-.+.+..|.+++++|++|+||||||++|.++++..+. .++++||+.|||++|.|++..+.. +....|..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34456677778899999999999999999999997752 246899999999999999998754 333456666
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhH-HHHHHhcCCCC
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQI-TRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i-~~il~~~~~~~ 649 (1112)
.+.+++.. .+...+.|+|+|||+|++++... ..|.++++|||||+| ++++.+|...+ ..+...++++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 66655542 23456899999999999988653 468999999999999 78888876554 44556678899
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHH-----HHHHHHhhhhcCCeEEEEeCCH
Q 001262 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL-----RLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~-----~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
|+|+||||++... + ..++.++..+.+.+..++ +.+++.......++. .+..++.. ..|++||||+++
T Consensus 148 qlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p---Ve~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER--L-SSLLPDAPVVESEGRSFP---VEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH--H-HHHcCCCcEEEecCccee---eeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 9999999998653 3 456666555666554432 444444333333322 22222222 358999999999
Q ss_pred HHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC--------
Q 001262 725 EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN-------- 793 (1112)
Q Consensus 725 ~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~-------- 793 (1112)
.+++.++..|.. .++.++.+||+|++.+|..++..|.+|..+|||||+++++||||++|++|||+++|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred ----------CHHHHHHHHccccCCCCccEEEEEecCCc
Q 001262 794 ----------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 794 ----------s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
|.++|+||+||+||. .+|.||.||++.+
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 345699999999999 6999999999754
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.5e-38 Score=405.98 Aligned_cols=297 Identities=24% Similarity=0.307 Sum_probs=244.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+||.++.|+|++++||||||||+ |+++++..+.. .++++|||+||++||.|++..++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 577 8999999999999999999999999999996 66666655432 37889999999999999999999999
Q ss_pred hhcCceEEEEeCCCCh-----HHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-------
Q 001262 565 KVMGVRCVPVYGGSGV-----AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~-----~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...++.+..++|+.+. ..+...+.. +++|+|+||++|.+++.. ..+..+++|||||||+|++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchhh
Confidence 9889888888877642 334455554 589999999999988752 3556799999999999986
Q ss_pred ----CCCc-hhHHHHHHhcCC------------------------CCcEEEEeccccHH-HHHHHHHhcCCCeEEEecCc
Q 001262 632 ----MGFE-PQITRIVQNIRP------------------------DRQTVLFSATFPRQ-VEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 632 ----~~f~-~~i~~il~~~~~------------------------~~q~il~SAT~~~~-~~~l~~~~l~~p~~i~~~~~ 681 (1112)
+||. ..+..++..++. ..|+|+||||+++. +.. .++..++.+.++..
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP 299 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc
Confidence 7886 678888877764 68999999999864 332 23455666777766
Q ss_pred cccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001262 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 758 (1112)
.....++.+.+.... .+...|+.++... +.++||||++... |+.|+..|...|++|..+||+| ...++
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 666677888776554 5666777777653 3579999999776 9999999999999999999999 23469
Q ss_pred HhhcCCccEEEe----cCcccccCCCCC-CcEEEEeCCCC------CHHHHHHHHccccC
Q 001262 759 DFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPN------HYEDYVHRVGRTGR 807 (1112)
Q Consensus 759 ~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~~~p~------s~~~y~QriGR~gR 807 (1112)
.|++|+++|||| |++++||||||+ |.+||||++|. ....|.|++||+..
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999999999999 699999999999 89999999999 57889999999963
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=351.70 Aligned_cols=316 Identities=32% Similarity=0.546 Sum_probs=251.8
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhc---CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCC
Q 001262 541 PVGLIMAPTRELVQQIHSDIRKFAKVM---GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~---~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
|.+||+-|.++|+.|.++.|++|-... .++..++.||.....|+..+..|++|||+||++|.+.+... +..|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeee
Confidence 788999999999999999888876544 35667889999999999999999999999999999998653 367889
Q ss_pred ceEEEeccchhhhcCCCchhHHHHHHhcCC------CCcEEEEeccccH-HHHHHHHHhcCCCeEEEecCccccccCceE
Q 001262 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRP------DRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 618 i~~vViDEah~~~~~~f~~~i~~il~~~~~------~~q~il~SAT~~~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q 690 (1112)
+.|+|+|||+.++..++...|.++...++. ..|.++.|||+.. .+..+...+++.|..+.+.+...+...+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999999998888764 3689999999753 456677888899988888887777666665
Q ss_pred EEEecccc--hhHHHH----------------------------HHHHhh--------hhcCCeEEEEeCCHHHHHHHHH
Q 001262 691 LVEVRPES--DRFLRL----------------------------LELLGE--------WYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 691 ~~~~~~~~--~k~~~l----------------------------l~~l~~--------~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
++....+. .-+..| ..+|.. .....++||||.++.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 55433211 111111 112211 0123589999999999999999
Q ss_pred HHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCC
Q 001262 733 DLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 733 ~L~~~~---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G 809 (1112)
+|.+.| |+|+++||+..+.+|...++.|+.+..++||||++++|||||.++-+|||..+|..-..|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCcc--------------------------------CchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001262 810 RKGCAITFISEEDA--------------------------------KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 810 ~~g~~~~~~~~~d~--------------------------------~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
+-|.+|+|+...-. .++..+...|+...++|...|.--.+.|-.++..
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~y 683 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVY 683 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEe
Confidence 99999998854322 2344555556666666655555445555555544
Q ss_pred hh
Q 001262 858 GL 859 (1112)
Q Consensus 858 ~~ 859 (1112)
|.
T Consensus 684 gq 685 (725)
T KOG0349|consen 684 GQ 685 (725)
T ss_pred cc
Confidence 43
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-38 Score=391.90 Aligned_cols=306 Identities=20% Similarity=0.296 Sum_probs=238.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH-hhhcCceE
Q 001262 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF-AKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~-~~~~~i~~ 571 (1112)
+-.+.+..+.+++++|++|+||||||++|.++++.... .+.++||++|||++|.|++..+... ....|..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 34466677778999999999999999999999986521 1347999999999999999988543 44467777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchh-HHHHHHhcCCCC
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQ-ITRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~-i~~il~~~~~~~ 649 (1112)
...+++... ....+.|+|+|||+|++++... ..|+++++|||||+| ++++.++... +..++..++++.
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 777776532 2345789999999999988653 468999999999999 5676664333 345667788999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHH-HHHHHhhhh--cCCeEEEEeCCHHH
Q 001262 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~-ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|+|+||||++.. .+ ..++.++..+.+.+..+ .+.+++.......++.. +...|.... ..+.+||||+++.+
T Consensus 151 qlilmSATl~~~--~l-~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDND--RL-QQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHH--HH-HHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999999865 23 45666655566555433 35555544444444431 111222221 35899999999999
Q ss_pred HHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC----------
Q 001262 727 CDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 727 ~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~---------- 793 (1112)
++.++..|.. .++.++.+||+|++.+|..++..|.+|..+|||||+++++||||++|++|||++++.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred --------CHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 794 --------HYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 794 --------s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
|-++|+||+||+||. ..|.||.||++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 336899999999999 59999999997543
No 58
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=374.00 Aligned_cols=343 Identities=24% Similarity=0.334 Sum_probs=271.5
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001262 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
-|++.+.+.+... |..|||.|.+|||.|.+|+++|++||||||||++++||++..|..........+-.||+|+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3678888888887 999999999999999999999999999999999999999999988642233457889999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC
Q 001262 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~ 632 (1112)
...+...+..++..+|+.+...+|.++..+....+++.++|+|+||+.|.-+|... .....|.++.+|||||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999999999999999999998888888888999999999997776543 23346889999999999988765
Q ss_pred CCchhHH----HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC--CeEEEecCccccccCceEEEEecc---cchhHHH
Q 001262 633 GFEPQIT----RIVQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQLVEVRP---ESDRFLR 703 (1112)
Q Consensus 633 ~f~~~i~----~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~--p~~i~~~~~~~~~~~i~q~~~~~~---~~~k~~~ 703 (1112)
.-+.++. ++..... +.|.|++|||..+ ....++++.+. ++.|..... .....+.-...... ...-...
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHH
Confidence 5444433 3333333 8999999999873 44456665554 444332211 11111111111111 0112233
Q ss_pred HHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 704 LLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 704 ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
++..|..... ...+|||+||+..++.|+..|.+.+ ..+..+||.++.+.|..+.+.|++|..+++|||+.++-||||.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 3444433332 3489999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccC-CCCccEEEEEecC
Q 001262 782 ELELVINFDAPNHYEDYVHRVGRTGR-AGRKGCAITFISE 820 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR-~G~~g~~~~~~~~ 820 (1112)
++++||+|+.|.+...++||+||+|. .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999996 4555666666655
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-37 Score=397.63 Aligned_cols=307 Identities=21% Similarity=0.261 Sum_probs=229.2
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCC-----CCCCCCcEEEEccchhHHHHHHHHHHHHhh------------hcCceE
Q 001262 509 GVAKTGSGKTLAFVLPMLRHIKDQPPV-----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK------------VMGVRC 571 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~-----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~------------~~~i~~ 571 (1112)
|++|||||||++|+||+|..+..++.. ....+.++|||+||++|+.|++..++..+. .+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 113468999999999999999998875322 247899
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchh----HHHHHHhcCC
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ----ITRIVQNIRP 647 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~----i~~il~~~~~ 647 (1112)
...+|+++..++...+.+.++|||+||++|..+|... ....|+++.+|||||+|.|++..++.+ +.+|...+..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999998887777778999999999998887642 224689999999999999987654444 4455555567
Q ss_pred CCcEEEEeccccHHHHHHHHHhcC-CCeEEEecCccccccCceEEEEecccc-------------------hhHHHH-HH
Q 001262 648 DRQTVLFSATFPRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPES-------------------DRFLRL-LE 706 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~l~-~p~~i~~~~~~~~~~~i~q~~~~~~~~-------------------~k~~~l-l~ 706 (1112)
..|+|+||||+++ ...++..+.. .|+.+.. ........+...+...+.. .....+ ..
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 7899999999987 4556655443 3555432 2111111222122111100 000111 12
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcC---------------------------------CCeeeecCCCCHHHH
Q 001262 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHG---------------------------------YPCLSLHGAKDQTDR 753 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~ihg~~~~~~R 753 (1112)
++.......++||||||+..|+.++..|.+.. +.+.++||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33333346789999999999999999997631 126789999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC-CCccEEEEEec
Q 001262 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFIS 819 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~-G~~g~~~~~~~ 819 (1112)
..+++.|++|.++|||||+++++||||+.|++||+|++|.++.+|+||+||+||. |..+.++++..
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999996 33445554433
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-37 Score=368.99 Aligned_cols=322 Identities=21% Similarity=0.220 Sum_probs=249.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|||+|..++|.++.|+ |+.+.||+|||++|++|++.+.. .|+.|+||+||++||.|.+.++..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 564 79999999999999999 99999999999999999998754 37899999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC----------------------CCccccCCceEE
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG----------------------GKITNLRRVTYL 621 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~----------------------~~~~~l~~i~~v 621 (1112)
..+|+++++++||.+.. ...+..+++|+|+|..-| .|+|..+- .....+..+.|+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 99999999999998643 455566899999999887 44443321 001123567899
Q ss_pred Eeccchhhh-cCC-----------------CchhHHHHHH----------------------------------------
Q 001262 622 VMDEADRMF-DMG-----------------FEPQITRIVQ---------------------------------------- 643 (1112)
Q Consensus 622 ViDEah~~~-~~~-----------------f~~~i~~il~---------------------------------------- 643 (1112)
||||+|.++ |.. +...+..++.
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999653 100 0000000000
Q ss_pred ----------hc------CCC-----------------------------------------------------------
Q 001262 644 ----------NI------RPD----------------------------------------------------------- 648 (1112)
Q Consensus 644 ----------~~------~~~----------------------------------------------------------- 648 (1112)
.+ ..+
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 00 000
Q ss_pred --CcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHH
Q 001262 649 --RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQE 725 (1112)
Q Consensus 649 --~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~ 725 (1112)
..+.+||||.+.....|...|..+++.|...... .....+.+.+.+...|+..|+..+..... +.++||||+|+.
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 1377899999888778888887777654332221 22233344556667899999988877542 468999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---CCc-----EEEEeCCCCCHHH
Q 001262 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYED 797 (1112)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~~~p~s~~~ 797 (1112)
.++.|+..|...|+++..|||.++ .++..+..|..+...|||||++++||+||+ +|. +||+|++|.+...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 999999999999999999999865 455556667666678999999999999999 666 9999999999999
Q ss_pred HHHHHccccCCCCccEEEEEecCCcc
Q 001262 798 YVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 798 y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
|+||+|||||.|.+|.|++|++..|.
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999998664
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.4e-38 Score=405.84 Aligned_cols=322 Identities=20% Similarity=0.239 Sum_probs=254.0
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 478 IMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 478 l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+.+.++. +|| .|+++|.++||.++.|+|++++||||||||++++++++.... .|+++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHHH
Confidence 4455665 899 699999999999999999999999999999966665554321 367899999999999999
Q ss_pred HHHHHHHhhhc--CceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh
Q 001262 557 HSDIRKFAKVM--GVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 557 ~~~~~~~~~~~--~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
+..+..++..+ ++.+.+++||.+..++. ..+..| ++|||+||++|.+.+... . ..++++|||||||+|+
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceecc
Confidence 99999998875 46778888998877663 345554 899999999998876431 1 2678999999999998
Q ss_pred c-----------CCCchhHHH----HHH----------------------hcCCCCc-EEEEeccccHHHHHHHHHhcCC
Q 001262 631 D-----------MGFEPQITR----IVQ----------------------NIRPDRQ-TVLFSATFPRQVEILARKVLNK 672 (1112)
Q Consensus 631 ~-----------~~f~~~i~~----il~----------------------~~~~~~q-~il~SAT~~~~~~~l~~~~l~~ 672 (1112)
+ +||.+.+.. |+. .++..+| +++||||+++... ...++..
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 589888864 432 2344556 6779999986421 2234567
Q ss_pred CeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCCC
Q 001262 673 PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 673 p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
++.+.++.......++.+.+.......+ ..|+.+|... +.++||||++... |+.|+..|...|++|..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 7777877766666778887765554444 4677777654 4578999999875 589999999999999999995
Q ss_pred HHHHHHHHHHhhcCCccEEEec----CcccccCCCCC-CcEEEEeCCCC---CHHHHHHHH-------------ccccCC
Q 001262 750 QTDRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAPN---HYEDYVHRV-------------GRTGRA 808 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~~~p~---s~~~y~Qri-------------GR~gR~ 808 (1112)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. ++..|.|-. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 59999999999 99999999999 777666655 999999
Q ss_pred CCccEEEEEecCCcc
Q 001262 809 GRKGCAITFISEEDA 823 (1112)
Q Consensus 809 G~~g~~~~~~~~~d~ 823 (1112)
|..+.++..+...+.
T Consensus 444 g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 444 GIPIEGVLDVFPEDV 458 (1638)
T ss_pred CCcchhHHHhHHHHH
Confidence 988777755444443
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-37 Score=358.58 Aligned_cols=328 Identities=23% Similarity=0.377 Sum_probs=259.6
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001262 480 ETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
..|+ -+||..++|-|.++|..+++|+|+|++.|||.||++||.+|++-. .| .+|||.|..+|......
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 4455 389999999999999999999999999999999999999999843 23 68999999999876655
Q ss_pred HHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-
Q 001262 559 DIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG- 633 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~- 633 (1112)
.+.. .|+.+.++.+..+..+.. ..+..| .+|++.+|++|..-...+. ..--.+.++||||||++.+||
T Consensus 76 ~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~---L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 76 QLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL---LKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH---HHhCCCceEEechHHHHhhcCC
Confidence 5555 588999998887766553 444444 6999999999854322111 123468899999999999998
Q ss_pred -CchhHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEecCccccccCceEEEEecc-cchhHHHHHHH
Q 001262 634 -FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLEL 707 (1112)
Q Consensus 634 -f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~l~--~p~~i~~~~~~~~~~~i~q~~~~~~-~~~k~~~ll~~ 707 (1112)
|.+.+..+-... -++..++.||||.++.+..-+...|. .+. +.+. ++..++|...+.... ...++. +
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~--sfdRpNi~~~v~~~~~~~~q~~----f 221 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-IFRG--SFDRPNLALKVVEKGEPSDQLA----F 221 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEe--cCCCchhhhhhhhcccHHHHHH----H
Confidence 999988774433 24788999999999988766655553 332 2222 233334432222221 222222 3
Q ss_pred Hhh--hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE
Q 001262 708 LGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|.. ....+..||||.|+..++.++..|...|+.+..|||||+..+|..+.+.|..+..+|||||.++++|||-|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 332 234567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHH
Q 001262 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 786 VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~ 832 (1112)
||||++|.+++.|+|-+|||||.|....|++||++.|......++..
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999997665555443
No 63
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.1e-35 Score=380.55 Aligned_cols=291 Identities=22% Similarity=0.334 Sum_probs=229.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001262 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.+.+.......|+|+|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 34444434457999999999999999999999999999997 77777766543 26899999999999999999
Q ss_pred HHHHHhhhcCceEE---EEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001262 559 DIRKFAKVMGVRCV---PVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~---~~~gg~~~~~~---~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++.++ +++||.+..++ +..+.. +++|||+||++|.+++... .. ++.+|||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChHhhhh
Confidence 99999988776654 46788877654 334444 4899999999998877531 11 799999999999998
Q ss_pred -----------CCCchh-HHHHHH----------------------hcCCCCc--EEEEecc-ccHHHHHHHHHhcCCCe
Q 001262 632 -----------MGFEPQ-ITRIVQ----------------------NIRPDRQ--TVLFSAT-FPRQVEILARKVLNKPV 674 (1112)
Q Consensus 632 -----------~~f~~~-i~~il~----------------------~~~~~~q--~il~SAT-~~~~~~~l~~~~l~~p~ 674 (1112)
+||... +..|+. .++..+| +++|||| +|..+. ..++.+++
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHccccc
Confidence 788874 455432 3445555 5779999 565543 23456666
Q ss_pred EEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001262 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ---EKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~---~~~~~l~~~L~~~~~~~~~ihg~~~~~ 751 (1112)
.+.++.......++.+.+..... +...|+.+|... +.++||||++. +.|+.|+..|...|++|..+||++++
T Consensus 291 ~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 291 GFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred ceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 67777666666677777654332 244566666553 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCccEEEe----cCcccccCCCCC-CcEEEEeCCCCC
Q 001262 752 DRESTISDFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPNH 794 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~~~p~s 794 (1112)
.+++.|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 7899999999999999 599999999999 899999999974
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5e-36 Score=347.95 Aligned_cols=304 Identities=21% Similarity=0.240 Sum_probs=215.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-----
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV----- 580 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~----- 580 (1112)
++|++||||||||++|++|++..+... .+.+++|++||++|+.|++..+..++.. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 589999999999999999999876532 3568999999999999999999887542 33444443321
Q ss_pred ------HHHH-HHHh------cCCeEEEeCchHHHHHHHhcCC-CccccC--CceEEEeccchhhhcCCCchhHHHHHHh
Q 001262 581 ------AQQI-SELK------RGTEIVVCTPGRMIDILCTSGG-KITNLR--RVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 581 ------~~~~-~~l~------~g~~IiV~Tp~~L~~~l~~~~~-~~~~l~--~i~~vViDEah~~~~~~f~~~i~~il~~ 644 (1112)
.... .... -...|+|+||+.++..+..+.. ....+. .+++|||||||.++++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 1111 1111 1257999999999887754211 111111 23799999999998765444 5555555
Q ss_pred cC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEe-c-ccchhHHHHHHHHhhhhcCCeEEEEe
Q 001262 645 IR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-R-PESDRFLRLLELLGEWYEKGKILIFV 721 (1112)
Q Consensus 645 ~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~-~-~~~~k~~~ll~~l~~~~~~~~vLIF~ 721 (1112)
+. .+.|+|+||||+|..+..++..+...+....+...... ....+.+.. . ....+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 57899999999998777776665443221111111100 001122211 1 12234445555554444568999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHH----HHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCH
Q 001262 722 HSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDREST----ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~----~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~ 795 (1112)
+++..|+.++..|...+. .+..+||++++.+|..+ ++.|++|...|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8999999999999999999999995 8899998777 7
Q ss_pred HHHHHHHccccCCCCc----cEEEEEecCCcc
Q 001262 796 EDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 796 ~~y~QriGR~gR~G~~----g~~~~~~~~~d~ 823 (1112)
..|+||+||+||.|+. |.+|+|....+.
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8999999999998754 367777765544
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-35 Score=359.23 Aligned_cols=324 Identities=20% Similarity=0.256 Sum_probs=242.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+++.+..|+ |+.+.||+|||++|++|++..... |+.|+||+||+.||.|.+.++..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 675 89999999999998887 999999999999999999866553 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+++.+++||.+...+.. ...+++|+|+||++| .|+|..+- .....+..+.|+||||||.|+ |..
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 999999999999998444333 335699999999999 55554321 111346789999999999874 110
Q ss_pred ---------CchhHHHHHHhcCCC--------------------------------------------------------
Q 001262 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+...
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 111111222221110
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001262 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|....-..| .
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~ 381 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-F 381 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-H
Confidence 01344444443222222 2
Q ss_pred HhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001262 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 746 (1112)
..++-++...+...+........ ..+.....|+..++..+.... ...++||||+|+..++.|+..|...|+++..|||
T Consensus 382 ~~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 382 EVYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HHhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 23333332222222222212211 233455678888888887643 4568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCC---CCCc-----EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe
Q 001262 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDV---KELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi---~~v~-----~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
.+.+.++..+...+..| .|||||++++||+|| ++|. +||+|++|.+...|+||+|||||.|.+|.|++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888887777766 799999999999999 6998 9999999999999999999999999999999999
Q ss_pred cCCccC
Q 001262 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+..|.-
T Consensus 539 s~eD~l 544 (790)
T PRK09200 539 SLEDDL 544 (790)
T ss_pred cchHHH
Confidence 986654
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.3e-35 Score=354.09 Aligned_cols=301 Identities=17% Similarity=0.156 Sum_probs=222.2
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
...|+++|.++++.++.+.++|+++|||+|||+++++.+...+.. ...++||||||++|+.||...+..|+..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 458999999999999999999999999999999766533322222 1347999999999999999999998754
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
....+..+++|.... .+.+|+|+||++|..... ..+.++++|||||||++.. ..+..++..++
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~ 247 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLD 247 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhh
Confidence 445566677776432 347999999999876432 2467899999999999874 35677777887
Q ss_pred CCCcEEEEeccccHHHH-HHH-HHhcCCCeEEEecCccccc------cCceEEE---------------------Eeccc
Q 001262 647 PDRQTVLFSATFPRQVE-ILA-RKVLNKPVEIQVGGRSVVN------KDITQLV---------------------EVRPE 697 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~-~l~-~~~l~~p~~i~~~~~~~~~------~~i~q~~---------------------~~~~~ 697 (1112)
+.+++++||||++.... .+. ..+++ |+...+....... ..+.... .+...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 78899999999875321 111 11222 2222221110000 0000000 00111
Q ss_pred chhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Cccc
Q 001262 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~ 775 (1112)
..+...+..++.... .+.++||||++.++++.|+..|...|+++..+||+|++.+|..+++.|++|...||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 122222333333322 34689999999999999999999999999999999999999999999999999999999 8999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCcc
Q 001262 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|+|+|++++||++.++.+...|+||+||++|.+..+
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999999999986544
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.3e-35 Score=351.85 Aligned_cols=321 Identities=20% Similarity=0.255 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+|+|.|++..+..++..|+.++||+|||++|++|++.+.+. |+.++||+||++||.|++.++..++..+|+.
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 45555555555545557999999999999999998876553 5569999999999999999999999999999
Q ss_pred EEEEeCCCC---hHHHHHHHhcCCeEEEeCchHH-HHHHHhc---CCCccccCCceEEEeccchhhh-cCC---------
Q 001262 571 CVPVYGGSG---VAQQISELKRGTEIVVCTPGRM-IDILCTS---GGKITNLRRVTYLVMDEADRMF-DMG--------- 633 (1112)
Q Consensus 571 ~~~~~gg~~---~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~---~~~~~~l~~i~~vViDEah~~~-~~~--------- 633 (1112)
+.+++++.. ..........+++|+||||++| .++|..+ ......+..+.++||||||.|+ |..
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 999887632 2223344446799999999999 5555332 1112346789999999999874 211
Q ss_pred ------CchhHHHHHHhcCCC-----------------------------------------------------------
Q 001262 634 ------FEPQITRIVQNIRPD----------------------------------------------------------- 648 (1112)
Q Consensus 634 ------f~~~i~~il~~~~~~----------------------------------------------------------- 648 (1112)
+...+..++..+..+
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 111111222222111
Q ss_pred ----------------------------------------------------------CcEEEEeccccHHHHHHHHHhc
Q 001262 649 ----------------------------------------------------------RQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 649 ----------------------------------------------------------~q~il~SAT~~~~~~~l~~~~l 670 (1112)
..+.+||+|.......|. .++
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETY 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHh
Confidence 113444555433333332 233
Q ss_pred CCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001262 671 NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 671 ~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
+-.+.+.+...+....... ...+.....|+..++..+.... ...++||||+++..++.|+..|...|+++..+||.+.
T Consensus 381 ~l~v~~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 381 SLSVVKIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CCCEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 3333222222222211111 1234455678888888887654 4568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCC---------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC
Q 001262 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVK---------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
+.++..+...|+.| .|+|||++++||+||+ ++.+||+|++|....+ +||+|||||.|.+|.+++|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99988887777766 7999999999999999 9999999999998777 9999999999999999999998
Q ss_pred CccC
Q 001262 821 EDAK 824 (1112)
Q Consensus 821 ~d~~ 824 (1112)
.|.-
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 6654
No 68
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.8e-34 Score=351.10 Aligned_cols=368 Identities=19% Similarity=0.233 Sum_probs=287.6
Q ss_pred HHHHHHHH-HCCCCCChHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001262 476 SKIMETIR-KLNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 476 ~~l~~~l~-~~~~~~pt~iQ~~ai~~il~----g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
......+. .++| .-||-|..||..+.. + .|-|+||..|.|||.+++-+++..++. |++|.||||
T Consensus 581 ~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVP 651 (1139)
T COG1197 581 TEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVP 651 (1139)
T ss_pred hHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcc
Confidence 33444443 4666 579999999999873 3 699999999999999999999988664 789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|.-||.|+++.|+.-+..+++++..+..-.+..++. ..+..| .||||||+-.| . +...++++++||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~----kdv~FkdLGLlIID 723 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S----KDVKFKDLGLLIID 723 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C----CCcEEecCCeEEEe
Confidence 999999999999999999999999988887777764 444555 69999997644 2 22578899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001262 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|-|| |+..-+.-++.++.+..++-||||+-|..-.++...+.+-..|... +...-.|..++.-.++. ..-
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~~~d~~---~ir 793 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVSEYDDL---LIR 793 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEecCChH---HHH
Confidence 9999 6777888899999999999999998777666777666655433322 22222333333222221 122
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001262 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
-.++.+...+|++...+|.++.++.++..|... ...+.+.||.|+..+-+.+|..|.+|.++|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 234445556899999999999999999999886 467899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCC-HHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhh
Q 001262 783 LELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 783 v~~VI~~~~p~s-~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~ 861 (1112)
++++|+.+.... .++..|--||+||..+.++||+++.+.... .. .+...+..+++
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~l-T~-------------------~A~kRL~aI~~---- 929 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKAL-TE-------------------DAEKRLEAIAS---- 929 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcccc-CH-------------------HHHHHHHHHHh----
Confidence 999999888775 566777779999999999999888654321 11 12222222221
Q ss_pred ccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001262 862 AHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 862 ~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...-|.||.++.+|+++||+|..+|..|+|+-.
T Consensus 930 ---~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~ 962 (1139)
T COG1197 930 ---FTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIE 962 (1139)
T ss_pred ---hhhcCchHHHHhcchhccccccccCccccCchh
Confidence 223489999999999999999999999999743
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.7e-34 Score=344.26 Aligned_cols=324 Identities=23% Similarity=0.280 Sum_probs=242.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+++.+..|+ |+.++||+|||++|++|++...+. |..|+||+||+.||.|.+.++..++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 564 68999999998888776 999999999999999999644433 4569999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhhc-C-------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMFD-M------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~~-~------- 632 (1112)
..+|+++.+++||.+.......+ .++|+|+||++| .++|..+- .....+..+.++||||+|+|+- .
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999999876654444 489999999999 88886541 1124578899999999998752 1
Q ss_pred -C-------CchhHHHHHHhcCCC--------------------------------------------------------
Q 001262 633 -G-------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 633 -~-------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
| .......|...+..+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 1 000111111111100
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001262 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 358 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF-E 358 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH-H
Confidence 11344444443322222 2
Q ss_pred HhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001262 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 746 (1112)
.+++-++.+.+...+....... ...+.....|+..++..+..... +.++||||+++..++.|+..|...|+++..|||
T Consensus 359 ~iY~l~vv~IPtnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna 437 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNA 437 (745)
T ss_pred HHhCCCEEEeCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeC
Confidence 2233333222222221111111 12234455788888877755544 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC-------CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEec
Q 001262 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE-------LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~-------v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
. +..|+..+..|..+...|+|||++|+||+||+. ..+||++++|.+...|.|++|||||.|.+|.+++|++
T Consensus 438 ~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 438 K--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred C--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 8 889999999999999999999999999999998 5699999999999999999999999999999999999
Q ss_pred CCccCc
Q 001262 820 EEDAKY 825 (1112)
Q Consensus 820 ~~d~~~ 825 (1112)
..|.-+
T Consensus 516 ~eD~l~ 521 (745)
T TIGR00963 516 LEDNLM 521 (745)
T ss_pred ccHHHH
Confidence 876543
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-33 Score=311.43 Aligned_cols=324 Identities=23% Similarity=0.316 Sum_probs=237.2
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...++.+|......++.+ +.|++.|||.|||+.+++-|...+... .+ ++|||+||+-|+.|++..|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457888999888877766 899999999999999999998887764 23 899999999999999999999876
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHh
Q 001262 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~ 644 (1112)
.-.-.++.++|-....+....+.. ..|+|+||+.+.+-|..+ ..++.++.+||+|||||-.. ..+. .+.+.+..
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv-~Va~~y~~ 158 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYV-FVAKEYLR 158 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHH-HHHHHHHH
Confidence 555567778887776666555544 799999999998777653 37899999999999998542 2222 22232333
Q ss_pred cCCCCcEEEEeccccHHHHHHH---HHhcCCCeEEEe-------------------------------------------
Q 001262 645 IRPDRQTVLFSATFPRQVEILA---RKVLNKPVEIQV------------------------------------------- 678 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~---~~~l~~p~~i~~------------------------------------------- 678 (1112)
...++.+|++|||+....+.+. ..+.-.-+.+..
T Consensus 159 ~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 159 SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456679999999864432221 111000000000
Q ss_pred --------cCccccc--------------cC-----------------------------c-------------------
Q 001262 679 --------GGRSVVN--------------KD-----------------------------I------------------- 688 (1112)
Q Consensus 679 --------~~~~~~~--------------~~-----------------------------i------------------- 688 (1112)
....+.. .+ +
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 0000000 00 0
Q ss_pred -------------------eEEEEecccchhHHHHHHHHhhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCee-eec
Q 001262 689 -------------------TQLVEVRPESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCL-SLH 745 (1112)
Q Consensus 689 -------------------~q~~~~~~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~ih 745 (1112)
...........|+..+.+++..... ..++|||++.+.+++.+..+|...+..+. .+-
T Consensus 319 k~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFi 398 (542)
T COG1111 319 KAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398 (542)
T ss_pred HHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEe
Confidence 0000001112344555566655542 34899999999999999999999988774 333
Q ss_pred --------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEE
Q 001262 746 --------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 746 --------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~ 817 (1112)
.||+|.++..+++.|++|.++|||||+|++.|||||.+++||+|++-.|...++||.|||||. +.|.+|+|
T Consensus 399 GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 399 GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred eccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred ecCCcc
Q 001262 818 ISEEDA 823 (1112)
Q Consensus 818 ~~~~d~ 823 (1112)
++....
T Consensus 478 vt~gtr 483 (542)
T COG1111 478 VTEGTR 483 (542)
T ss_pred EecCch
Confidence 998743
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-33 Score=355.37 Aligned_cols=299 Identities=25% Similarity=0.355 Sum_probs=214.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE--cc----chhHHHHHHHHHHH-Hhh
Q 001262 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM--AP----TRELVQQIHSDIRK-FAK 565 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl--~P----treLa~Q~~~~~~~-~~~ 565 (1112)
+..+.+..|..++.+||+|+||||||++ +|.+.... +.+..++|+ -| +++||.|+..++.. ++.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-------GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3445666677777888889999999994 67443322 123333343 36 45777777776654 222
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHh
Q 001262 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~ 644 (1112)
..|+. +... . ....++.|+|||||+|++.+... ..|.++++||||||| ++++++|...+..-+..
T Consensus 149 ~VGY~----vrf~---~---~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 149 CVGYK----VRFN---D---QVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLP 214 (1294)
T ss_pred eecee----ecCc---c---ccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhh
Confidence 22221 1111 1 12356899999999999998653 358999999999999 79999987653333333
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc------chhHHHHHHHHhhh--hcCCe
Q 001262 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEW--YEKGK 716 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~--~~~~~ 716 (1112)
.+++.|+|+||||++. ..|+..|.+.|+ +.+.+...+ +.+.+..... .+.+..++..+... ...|.
T Consensus 215 ~rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 215 RRPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred cCCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 3578999999999974 467777777775 556555432 3333332211 12333444433322 24578
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCC---eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC--
Q 001262 717 ILIFVHSQEKCDALFRDLLKHGYP---CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~~~~---~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~-- 791 (1112)
+||||++..+++.++..|...++. ++.+||+|++.+|..++.. .|..+|||||+++++|||||+|.+||++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987765 6789999999999999886 478999999999999999999999999863
Q ss_pred -------------C---CCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 792 -------------P---NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 -------------p---~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
| .|.++|+||+|||||. .+|.||.||++.+.
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 59999999997653
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=315.86 Aligned_cols=338 Identities=21% Similarity=0.317 Sum_probs=271.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
....+.+++.+...|+..|+..++|+|.-|+.. ++.|.|++++++|+||||++.-++-+..++. .|.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 356788999999999999999999999999977 6799999999999999999988887776654 37789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH----HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001262 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI----SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~----~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||..+||+|-|..|+.-...+|+.+..-+|-.-+...- ......+||||+|++.+-.+|... ..+.+++.||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVV 343 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVV 343 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEE
Confidence 99999999999999998888999988877765333221 111234799999999986666543 4788999999
Q ss_pred eccchhhhcCCCchhHH---HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEE-EEecccc
Q 001262 623 MDEADRMFDMGFEPQIT---RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPES 698 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~---~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~-~~~~~~~ 698 (1112)
|||+|.+-+...++.+. .-+..+-+..|+|.+|||..+. ..++..+.-.++.+. .++++ +..+ +...+..
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~--~RPVp---lErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD--ERPVP---LERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--CCCCC---hhHeeeeecCch
Confidence 99999887755444444 4455666889999999998754 457777776665432 33332 3333 4444577
Q ss_pred hhHHHHHHHHhhhh-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001262 699 DRFLRLLELLGEWY-------EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~-------~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
.|+..+..+...-. -.|++|||++|+..|..|+..|...|+.+.++|+||+..+|..+...|.++.+.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 88777776665432 24799999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEE---eCCCC-CHHHHHHHHccccCCCC--ccEEEEEecCCc
Q 001262 772 SVAARGLDVKELELVIN---FDAPN-HYEDYVHRVGRTGRAGR--KGCAITFISEED 822 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~---~~~p~-s~~~y~QriGR~gR~G~--~g~~~~~~~~~d 822 (1112)
-+++.|+|+|.-.+|+. ++.-| ++..|.|++||+||.+. .|.+|+++-+.-
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 99999999998665542 33333 89999999999999875 599999987653
No 73
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.9e-32 Score=348.37 Aligned_cols=324 Identities=24% Similarity=0.328 Sum_probs=240.6
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+++|.+++..++.+ ++|+++|||+|||++|+++++..+.. .+.++||||||++|+.||...+..++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3357899999999988887 99999999999999999999887742 356899999999999999999999875
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc
Q 001262 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~ 645 (1112)
..+..++.++|+...... ..+..+++|+|+||+.+...+... ...+.++++|||||||++........+...+...
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 545577778887766543 344456899999999997766543 2467889999999999986543333344444444
Q ss_pred CCCCcEEEEeccccHH---HHHHHHHhcCCCeEE--------------------EecCc---------------------
Q 001262 646 RPDRQTVLFSATFPRQ---VEILARKVLNKPVEI--------------------QVGGR--------------------- 681 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~---~~~l~~~~l~~p~~i--------------------~~~~~--------------------- 681 (1112)
.+..++++||||+... +..++..+....+.+ .+.-.
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5567799999997322 222222111000000 00000
Q ss_pred ---ccc---c------------cCceE-----------------------------------------------------
Q 001262 682 ---SVV---N------------KDITQ----------------------------------------------------- 690 (1112)
Q Consensus 682 ---~~~---~------------~~i~q----------------------------------------------------- 690 (1112)
... . ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 000 0 00000
Q ss_pred -------------------EEEecccchhHHHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC-
Q 001262 691 -------------------LVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA- 747 (1112)
Q Consensus 691 -------------------~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~- 747 (1112)
...+.....|+..|..+|.... ..+++||||++...|+.|+..|...|+.+..+||.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 0000112345566666665543 45799999999999999999999999999999986
Q ss_pred -------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC
Q 001262 748 -------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 748 -------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
|++.+|..++..|++|.+.|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+|+|++.
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999987 5889998876
Q ss_pred Cc
Q 001262 821 ED 822 (1112)
Q Consensus 821 ~d 822 (1112)
..
T Consensus 479 ~t 480 (773)
T PRK13766 479 GT 480 (773)
T ss_pred CC
Confidence 54
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.6e-32 Score=313.80 Aligned_cols=292 Identities=20% Similarity=0.229 Sum_probs=205.0
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc---
Q 001262 493 IQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM--- 567 (1112)
Q Consensus 493 iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~--- 567 (1112)
+|.++++.+..+.+ +|+++|||||||++|++|++.. +..+|+++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7788999999999999999842 3367999999999999999999988644
Q ss_pred -CceEEEEeCCCChH--HHH-----------------HH-HhcCCeEEEeCchHHHHHHHhcC---C--CccccCCceEE
Q 001262 568 -GVRCVPVYGGSGVA--QQI-----------------SE-LKRGTEIVVCTPGRMIDILCTSG---G--KITNLRRVTYL 621 (1112)
Q Consensus 568 -~i~~~~~~gg~~~~--~~~-----------------~~-l~~g~~IiV~Tp~~L~~~l~~~~---~--~~~~l~~i~~v 621 (1112)
++.+..+.|.+... ... .. ....+.|+++||+.|..++.... . ....+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 45555555542111 000 00 12357889999998866553211 0 11135789999
Q ss_pred EeccchhhhcCC-----CchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh--cCCCeEEEecCccc-----------
Q 001262 622 VMDEADRMFDMG-----FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV--LNKPVEIQVGGRSV----------- 683 (1112)
Q Consensus 622 ViDEah~~~~~~-----f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~--l~~p~~i~~~~~~~----------- 683 (1112)
||||+|.+...+ |...+..++.......++|++|||+++.+...+... ++.|+... .+...
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v-~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPI-DGEKYQFPDNPELEAD 228 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeee-cCcccccCCChhhhcc
Confidence 999999865432 222444455544455799999999999877776665 45554332 22200
Q ss_pred --------cccCceEEEEecccchhH---HHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhcC--CCeeeecCC
Q 001262 684 --------VNKDITQLVEVRPESDRF---LRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHG--YPCLSLHGA 747 (1112)
Q Consensus 684 --------~~~~i~q~~~~~~~~~k~---~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~~--~~~~~ihg~ 747 (1112)
+...+.+.+.. ....+. ..++..+.... ..+++||||+++..++.++..|...+ +.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00134333332 222222 22333333322 45699999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHcccc
Q 001262 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~g 806 (1112)
+++.+|..+ +...|||||+++++||||+.+ +|| ++ |.+...|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998765 378899999999999999987 566 55 889999999999997
No 75
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5e-33 Score=350.65 Aligned_cols=303 Identities=24% Similarity=0.294 Sum_probs=219.5
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEe
Q 001262 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575 (1112)
Q Consensus 496 ~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~ 575 (1112)
+.+..|..++.+||+|+||||||++ +|.+..-... +....+++.-|.|..|..+.. .++..+|..+...+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~---RvA~elg~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQ---RIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHH---HHHHHhCCCcceEE
Confidence 4556666777888899999999984 4544332111 112234445588877775544 44445666766667
Q ss_pred CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHhcCCCCcEEEE
Q 001262 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 576 gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~~~~~~q~il~ 654 (1112)
|+....+.. ....+.|+|+|+|+|+..+... ..|..+++||||||| ++++++|...+..-+...+++.|+|+|
T Consensus 144 GY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 144 GYKVRFHDQ--VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred eeEEcCCcc--cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 764333221 2356899999999999988653 358899999999999 899999887643333445678999999
Q ss_pred eccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc------chhHHHHHHHHhhhh--cCCeEEEEeCCHHH
Q 001262 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|||++. ..|+..|.+.|+ +.+.+...+ +...+..... .++...++..+.... ..|.+||||++..+
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 999964 567777766675 555555433 2222221111 123344444444322 35899999999999
Q ss_pred HHHHHHHHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCC-----------
Q 001262 727 CDALFRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP----------- 792 (1112)
Q Consensus 727 ~~~l~~~L~~~~---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p----------- 792 (1112)
++.++..|...+ +.++.+||+|++.+|..++..+ +..+|||||+++++|||||+|.+||+++++
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998764 4588999999999999997654 347999999999999999999999999853
Q ss_pred -------CCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 793 -------NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 793 -------~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
.|.+.|+||+||+||.| +|.||.||++.+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999998 9999999997654
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-33 Score=339.69 Aligned_cols=335 Identities=22% Similarity=0.347 Sum_probs=271.5
Q ss_pred HHHHH-HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 478 IMETI-RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 478 l~~~l-~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
++..| ..+|+..++|-|.++|..++.|+|+++.+|||.||+++|.||++-. ++.+|||.|..+|...
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~D- 319 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQD- 319 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHH-
Confidence 34444 4699999999999999999999999999999999999999999843 4589999999999774
Q ss_pred HHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC---CeEEEeCchHHHHHHHhcCCCccccCC---ceEEEeccch
Q 001262 557 HSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG---TEIVVCTPGRMIDILCTSGGKITNLRR---VTYLVMDEAD 627 (1112)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g---~~IiV~Tp~~L~~~l~~~~~~~~~l~~---i~~vViDEah 627 (1112)
.+..+ ...+|...++.++....++. ..+..+ +.|++.||+.+...-... .....|.. +.++||||||
T Consensus 320 --Qv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAH 395 (941)
T KOG0351|consen 320 --QVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAH 395 (941)
T ss_pred --HHHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHH
Confidence 44454 34689999999998887553 444444 699999999874321110 11234555 8999999999
Q ss_pred hhhcCC--CchhHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEecCccccccCceEEEEecccchhH
Q 001262 628 RMFDMG--FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRF 701 (1112)
Q Consensus 628 ~~~~~~--f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~l~--~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~ 701 (1112)
....|| |.+.+..+.... .+...+|.+|||.+..+..-+...|+ +|. +....+...++...|.........
T Consensus 396 CVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~~k~~~~~~ 472 (941)
T KOG0351|consen 396 CVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE---LFKSSFNRPNLKYEVSPKTDKDAL 472 (941)
T ss_pred HhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCCCCceEEEEeccCccch
Confidence 999998 888888764333 34578999999998888666655554 444 223455666666555544444556
Q ss_pred HHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001262 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..++..+..+...+.+||||.++.+|+.+...|...|+.+..||+||+..+|..+-..|..++++|+|||=++++|||.|
T Consensus 473 ~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 473 LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 66777777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHH
Q 001262 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
+|..||||.+|.+++.|.|-+||+||.|....|++|+...|...+..++.
T Consensus 553 DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 553 DVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887655554443
No 77
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=335.18 Aligned_cols=333 Identities=23% Similarity=0.273 Sum_probs=252.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001262 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 472 ~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
..++..+...+...++..++|.|+.++...+ ++.|+|+++|||||||+.+++.|++.+.+. +.++|+|||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3467788888888898888888888887655 569999999999999999999999998863 56899999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh
Q 001262 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
+||.+++.+|+ .+..+|+++...+|+..... ....+++|||+||+.+-.++.+.+. .+..+++|||||+|.+.
T Consensus 87 ALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 87 ALAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred HHHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecC
Confidence 99999999999 45678999999999986433 1224599999999999777665442 56789999999999998
Q ss_pred cCCCchhHHHHHHhcC---CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccc-cccCceEEEEecccch------h
Q 001262 631 DMGFEPQITRIVQNIR---PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESD------R 700 (1112)
Q Consensus 631 ~~~f~~~i~~il~~~~---~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~-~~~~i~q~~~~~~~~~------k 700 (1112)
+...++.+..|+..++ ...|+|.+|||+|+ ...++.+.-.+++.......+. ......+.+....... .
T Consensus 160 d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~ 238 (766)
T COG1204 160 DRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLI 238 (766)
T ss_pred CcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccc
Confidence 8766777777766554 44799999999986 4556666655554211111111 1111222232222111 2
Q ss_pred HHHHHHHHhh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCee
Q 001262 701 FLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCL 742 (1112)
Q Consensus 701 ~~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~ 742 (1112)
...++.++.. ...++++||||+++..+...+..|... -..+.
T Consensus 239 ~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gva 318 (766)
T COG1204 239 DNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318 (766)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcc
Confidence 2333333333 334679999999999999999888731 12467
Q ss_pred eecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEE----EeC-----CCCCHHHHHHHHccccCCCC--c
Q 001262 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----NFD-----APNHYEDYVHRVGRTGRAGR--K 811 (1112)
Q Consensus 743 ~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----~~~-----~p~s~~~y~QriGR~gR~G~--~ 811 (1112)
++|+||+..+|..+.+.|+.|.++|||||+.++.|+|+|.-.+|| .|+ .+.+..+|+|++|||||.|- .
T Consensus 319 fHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 319 FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCC
Confidence 899999999999999999999999999999999999999988777 377 45678999999999999875 4
Q ss_pred cEEEEEec
Q 001262 812 GCAITFIS 819 (1112)
Q Consensus 812 g~~~~~~~ 819 (1112)
|.++++.+
T Consensus 399 G~~~i~~~ 406 (766)
T COG1204 399 GEAIILAT 406 (766)
T ss_pred CcEEEEec
Confidence 66666663
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-32 Score=294.80 Aligned_cols=333 Identities=21% Similarity=0.365 Sum_probs=249.9
Q ss_pred HHHHHHH-CCCCCC-hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001262 478 IMETIRK-LNYEKP-MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 478 l~~~l~~-~~~~~p-t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
+..+|++ +|+.++ ++.|.+|+..+..+ +||.+++|||+||+++|.||.|.+ +.+.||+.|..+|+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 4455654 676654 79999999998865 699999999999999999999965 338899999999987
Q ss_pred HHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHH---hcCCeEEEeCchHH-----HHHHHhcCCCccccCCceEEEe
Q 001262 555 QIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISEL---KRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 555 Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l---~~g~~IiV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
.....+.+ +.+.+..+....+..+. +..| +....|++.||+.- .++|.. +.+-+-+.||||
T Consensus 76 DQiDHL~~----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vV 147 (641)
T KOG0352|consen 76 DQIDHLKR----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIVV 147 (641)
T ss_pred HHHHHHHh----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEEe
Confidence 66565555 34555555554443332 3333 34568999999864 344432 123345889999
Q ss_pred ccchhhhcCC--CchhHHHH--HHhcCCCCcEEEEeccccHHHHHH--HHHhcCCCeEEEecCccccccCceEEEEec-c
Q 001262 624 DEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEIL--ARKVLNKPVEIQVGGRSVVNKDITQLVEVR-P 696 (1112)
Q Consensus 624 DEah~~~~~~--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l--~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~-~ 696 (1112)
||||...+|| |.+.+..+ |...-++...|.++||.++.+..- ....|.+|+-+.-.. ....++..-+.+. .
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP--~FR~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP--TFRDNLFYDNHMKSF 225 (641)
T ss_pred chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc--chhhhhhHHHHHHHH
Confidence 9999999998 88888776 334446778999999999988553 344567887544221 1111211110000 0
Q ss_pred cchhHHHHHHHHhhhhc------------CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001262 697 ESDRFLRLLELLGEWYE------------KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~------------~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
-.+-+..|.++....+. .|--||||.|++.|+.++-.|...|+++..+|.|+...+|..+-+.|.+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 11223333333322221 245799999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHH
Q 001262 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
..||+||..+++|+|-|+|.+|||+++|.+++-|.|-.||+||.|...+|.++|+..|...+..|+.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998877766654
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.6e-31 Score=328.07 Aligned_cols=337 Identities=21% Similarity=0.331 Sum_probs=262.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
....+...|.+.|+..|+++|.+|+..+.+|+++||+.+||||||.+|++||+.++...+. -++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhH
Confidence 3344577788899999999999999999999999999999999999999999999988642 2789999999999
Q ss_pred HHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH-hcCCCccccCCceEEEeccchhhh
Q 001262 554 QQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC-TSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~-~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
+...+.+.++...++ +.+....|.+...+....+...++||++||.+|..++. ........+.++.||||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999999887 77777777776666556677789999999999977444 344445567889999999999532
Q ss_pred cCCCchhHHHH-------HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecc-------
Q 001262 631 DMGFEPQITRI-------VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP------- 696 (1112)
Q Consensus 631 ~~~f~~~i~~i-------l~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~------- 696 (1112)
-.|+..+-.+ +...+...|+|++|||+.+. ..++..+.+....+.+.....+.......+ ..+
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~-~~p~~~~~~~ 285 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVR-REPPIRELAE 285 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEE-eCCcchhhhh
Confidence 1244443333 33334578999999998654 457777777776654554444443333222 222
Q ss_pred --cchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHH----HHHHhcC----CCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001262 697 --ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF----RDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 697 --~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~----~~L~~~~----~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
.......+..++..... +-++|+||.+...++.+. ..+...+ ..+..++|+|...+|..+...|+.|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 11333334444443333 349999999999999987 4444445 568899999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHHccccCCCCccEEEEEec
Q 001262 766 NLLIATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
.++|+|++++-|+||.+++.||+++.|. +...|+||+||+||.++.+..+..+.
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999 89999999999999996666665554
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=4.4e-31 Score=310.48 Aligned_cols=323 Identities=24% Similarity=0.283 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
...++.+|.+.+...| |+++||++|||+|||++++..|++|+...+ ..+++|++||+-|+.|....+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3478999999999999 999999999999999999999999988764 368999999999999998777776544
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-HHHHhc
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQNI 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-~il~~~ 645 (1112)
..+....||.....-...+-...+|+|+||..|.+.|..... ..|+.+++|||||||+-.-..-...+. ..+..-
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 455666666333222234555689999999999888865432 237889999999999865332233333 444443
Q ss_pred CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe-----------------------------------------------
Q 001262 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQV----------------------------------------------- 678 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~----------------------------------------------- 678 (1112)
....|+|++|||+...+.....-+.+-.+.+.+
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 444499999999865433221111100000000
Q ss_pred --------------------cCccccccCceEE--------------------E--------------------------
Q 001262 679 --------------------GGRSVVNKDITQL--------------------V-------------------------- 692 (1112)
Q Consensus 679 --------------------~~~~~~~~~i~q~--------------------~-------------------------- 692 (1112)
.........-.+. +
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 0000000000000 0
Q ss_pred ------------------Eec--ccchhHHHHHHHHhhhhc---CCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeec-
Q 001262 693 ------------------EVR--PESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLH- 745 (1112)
Q Consensus 693 ------------------~~~--~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~ih- 745 (1112)
... ....|+..|..+|...+. ..++||||.++..|..|..+|... |+....+-
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 000 012233344444444332 348999999999999999999832 33333333
Q ss_pred -------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe
Q 001262 746 -------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 746 -------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
.+|++.++..+++.|++|.++|||||+|++.||||+.|++||-||+..++...+||.|| ||+- .|.|++++
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~ 526 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLT 526 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999 9984 78999888
Q ss_pred cCCc
Q 001262 819 SEED 822 (1112)
Q Consensus 819 ~~~d 822 (1112)
+...
T Consensus 527 t~~~ 530 (746)
T KOG0354|consen 527 TGSE 530 (746)
T ss_pred cchh
Confidence 8443
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=1.3e-30 Score=313.67 Aligned_cols=309 Identities=17% Similarity=0.185 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHHc-C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 488 EKPMPIQAQALPVIMS-G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..|+|+|.+|+..++. | +..|+++|||+|||++.+..+... +..+|||||+..|+.||..+|.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 3689999999999884 3 478999999999999987665432 2358999999999999999999986
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC-----CccccCCceEEEeccchhhhcCCCchhHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~-----~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
......+..++|+... .+.....|+|+|+..+......... ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 5434455555554321 1112368999999877432111000 011224688999999999853 4455
Q ss_pred HHHHhcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEecCccc-----cccCceEEEEe------------------
Q 001262 640 RIVQNIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSV-----VNKDITQLVEV------------------ 694 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~--~l~~~~l~~p~~i~~~~~~~-----~~~~i~q~~~~------------------ 694 (1112)
.++..+. ....|+||||+.+.-. ..+..+++ |..+...-... ....-...+.+
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666653 3457999999864321 11222222 32222211111 10000000000
Q ss_pred ----cccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccEE
Q 001262 695 ----RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLL 768 (1112)
Q Consensus 695 ----~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VL 768 (1112)
.....|+..+..+|.... .+.++||||.+...+..++..| .+..|||.+++.+|..+++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 011223333333443321 4569999999999999998877 356799999999999999999865 78999
Q ss_pred EecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHHccccCCCCccEE-------EEEecCCcc
Q 001262 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCA-------ITFISEEDA 823 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~-------~~~~~~~d~ 823 (1112)
|+|+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |+|++....
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999999984 999999999999998876654 888887543
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.6e-30 Score=304.09 Aligned_cols=362 Identities=24% Similarity=0.310 Sum_probs=259.1
Q ss_pred HCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCC--CCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 484 KLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP--PVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~--~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
-++|..+..+|..++|.+. ++.++|||||||||||..|+|.||+.|..+. -....++-++++|+|+++||..++..|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 4778889999999999988 5679999999999999999999999998521 122335778999999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCCccccCCceEEEeccchhhhcCCCchhHH
Q 001262 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
.+-+..+|+.|..++|.+.....- + ..|+|||+||+.+ |.+.+ ..+....+..+.+|||||+|.+-+ ..++.+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 998888999999999988554332 2 3499999999987 34333 223334467899999999997654 4677777
Q ss_pred HHHHhc-------CCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEecCccccccCceEEEEecccc-----------hh
Q 001262 640 RIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPES-----------DR 700 (1112)
Q Consensus 640 ~il~~~-------~~~~q~il~SAT~~~~~~~l~~~~l~~p-~~i~~~~~~~~~~~i~q~~~~~~~~-----------~k 700 (1112)
.|+... .....+|++|||+|+ ++.++.++--+| .-+......+.+-.+.+.+.-.... ..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 776544 245679999999996 445666555443 2222222223333445554433222 11
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc----C-------------------CCeeeecCCCCHHHHHHHH
Q 001262 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----G-------------------YPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----~-------------------~~~~~ihg~~~~~~R~~~~ 757 (1112)
...+++.+ ..+.+++|||.++......+..|.+. | ..+...|.||...+|..+.
T Consensus 339 ~~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 339 YDKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 12222333 34569999999999988888888653 1 3467899999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCCcEEEE----eCCCC------CHHHHHHHHccccCC--CCccEEEEEecCCccCc
Q 001262 758 SDFKSNVCNLLIATSVAARGLDVKELELVIN----FDAPN------HYEDYVHRVGRTGRA--GRKGCAITFISEEDAKY 825 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~~p~------s~~~y~QriGR~gR~--G~~g~~~~~~~~~d~~~ 825 (1112)
..|..|.++||+||..++.|+|+|.--++|- ||.-. .+.+.+|..|||||. +..|.++++-+.+-..+
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 9999999999999999999999998777772 55543 467889999999995 46788887666544333
Q ss_pred hHHHHHHHhhccCCCC-hhHHHHHHHHHHHHhhh
Q 001262 826 SPDLVKALELSEQVVP-DDLKALADSFMAKVNQG 858 (1112)
Q Consensus 826 ~~~i~~~l~~~~~~vp-~~l~~~~~~~~~~~~~~ 858 (1112)
. +..|.... +|. .-+..+++.+.+.+.-|
T Consensus 496 Y---~sLl~~~~-piES~~~~~L~dnLnAEi~Lg 525 (1230)
T KOG0952|consen 496 Y---ESLLTGQN-PIESQLLPCLIDNLNAEISLG 525 (1230)
T ss_pred H---HHHHcCCC-hhHHHHHHHHHHhhhhheeec
Confidence 3 33333222 232 33466777777766544
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=5.6e-29 Score=309.64 Aligned_cols=356 Identities=16% Similarity=0.184 Sum_probs=233.9
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|.|+|..++..++.. ..+|+..++|.|||+.+++.+...+.. +....+|||||+ .|+.||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 36889999998877643 478999999999999887776655443 234579999997 89999999987643
Q ss_pred hcCceEEEEeCCCChHHHH---HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-CchhHHHH
Q 001262 566 VMGVRCVPVYGGSGVAQQI---SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~---~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-f~~~i~~i 641 (1112)
++.+..+.++. ..... .......+++|||++.|...-... ....-..+++|||||||++-... .......+
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~--~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~ 297 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRL--EQALAAEWDLLVVDEAHHLVWSEEAPSREYQV 297 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHH--HHHhhcCCCEEEEechhhhccCCCCcCHHHHH
Confidence 44443333222 11100 011123689999998775311000 00112368999999999986321 11111233
Q ss_pred HHhc-CCCCcEEEEeccccH-H------------------HHHHH-------------HHhc-CCC--------------
Q 001262 642 VQNI-RPDRQTVLFSATFPR-Q------------------VEILA-------------RKVL-NKP-------------- 673 (1112)
Q Consensus 642 l~~~-~~~~q~il~SAT~~~-~------------------~~~l~-------------~~~l-~~p-------------- 673 (1112)
+..+ .....+|++|||+-. . ...|. ..++ ..+
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 3333 234578999999631 0 00010 0000 000
Q ss_pred -------------------------------------eEEEecC---ccccccCceEEEEe-------------------
Q 001262 674 -------------------------------------VEIQVGG---RSVVNKDITQLVEV------------------- 694 (1112)
Q Consensus 674 -------------------------------------~~i~~~~---~~~~~~~i~q~~~~------------------- 694 (1112)
+.+.-.. ..++.. ..+.+.+
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R-~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKR-ELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcC-ceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 0000000 000000 0111111
Q ss_pred ------------------cccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCHHHHHH
Q 001262 695 ------------------RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 695 ------------------~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~-~~~~~~~~ihg~~~~~~R~~ 755 (1112)
...+.|+..|+.+|... ...++||||+++..+..|...|. ..|+.+..|||+|++.+|..
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDR 535 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHH
Confidence 11123555566666543 35699999999999999999994 57999999999999999999
Q ss_pred HHHHhhcC--CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHH
Q 001262 756 TISDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 756 ~~~~F~~g--~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l 833 (1112)
++..|+++ ...|||||+++++|+|++.+++|||||+|+++..|+||+||+||.|++|.+.+++..........|...+
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 99999974 5999999999999999999999999999999999999999999999999888777666555555555555
Q ss_pred hh----ccCCCChhHHHHHHHHHHHHhhhh
Q 001262 834 EL----SEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 834 ~~----~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
.. ..+.+|. ...+.+.|...+...+
T Consensus 616 ~~~l~ife~~~~~-~~~v~~~~~~~l~~~l 644 (956)
T PRK04914 616 HEGLNAFEHTCPT-GRALYDEFGDELIPYL 644 (956)
T ss_pred hhhcCceeccCCC-HHHHHHHHHHHHHHHH
Confidence 43 3455554 5667777777766555
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=270.67 Aligned_cols=344 Identities=19% Similarity=0.318 Sum_probs=263.8
Q ss_pred ccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001262 470 HQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 470 ~~~~l~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
..|+.+....+.|+ .+.+.+++|.|..+|++.|.|.+++++.|||.||+++|.||+|.. ...+|||||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 34667777777776 478889999999999999999999999999999999999999853 457899999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH---hcCCeEEEeCchHHHHH---HHhcCCCccccCCce
Q 001262 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL---KRGTEIVVCTPGRMIDI---LCTSGGKITNLRRVT 619 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l---~~g~~IiV~Tp~~L~~~---l~~~~~~~~~l~~i~ 619 (1112)
...|.....-.++. +|+....+...++..+.. ..+ .....+|+.||+.+..- +.. -.+......+.
T Consensus 143 lislmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnk-leka~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNK-LEKALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHH-HHHHhhcceeE
Confidence 99998755444444 577776666655554321 111 12347899999987431 111 01123455688
Q ss_pred EEEeccchhhhcCC--CchhHH--HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEec
Q 001262 620 YLVMDEADRMFDMG--FEPQIT--RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 620 ~vViDEah~~~~~~--f~~~i~--~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~ 695 (1112)
+|-|||+|....|| |.+.+. .|+...-+...+|+++||.++.+..-+..++.--..++. ..++..+++...+...
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQK 296 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeC
Confidence 99999999999988 666654 345555577889999999988877666666543221111 1334445555444333
Q ss_pred c--cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001262 696 P--ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 696 ~--~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
+ .++-...+..+|...+.+..-||||-++.+|+.++..|..+|+.+..+|..|.+.++.-+-+.|..|++.|+|||-+
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 3 33455666667766666678899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHHHHHH-------------------------------------------HHccccCCCC
Q 001262 774 AARGLDVKELELVINFDAPNHYEDYVH-------------------------------------------RVGRTGRAGR 810 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p~s~~~y~Q-------------------------------------------riGR~gR~G~ 810 (1112)
+++|||-|+|.+||+..+|.+++.|.| -.||+||.|.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 6799999999
Q ss_pred ccEEEEEecCCccCchHHHH
Q 001262 811 KGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 811 ~g~~~~~~~~~d~~~~~~i~ 830 (1112)
+..||++|.-.|......++
T Consensus 457 ~a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 457 KADCILYYGFADIFKISSMV 476 (695)
T ss_pred cccEEEEechHHHHhHHHHH
Confidence 99999999766554443333
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.2e-28 Score=303.96 Aligned_cols=309 Identities=20% Similarity=0.254 Sum_probs=220.3
Q ss_pred CChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 489 KPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.||+.|.+++..++.+ +++++.|+||||||.+|+.++...+.. |.++|||+||++|+.|++..++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 6899999999999974 789999999999999999887776543 678999999999999999988774
Q ss_pred hcCceEEEEeCCCChHHHHHH---Hh-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC---CchhH
Q 001262 566 VMGVRCVPVYGGSGVAQQISE---LK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQI 638 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~---l~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~---f~~~i 638 (1112)
++..+..++|+.+..+.... +. ..++|||+|++.+. ..+.++++|||||+|.....+ ...+.
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 46788999999887655433 23 34799999998752 357789999999999765332 11122
Q ss_pred H--HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccc-cCceEEEEeccc------chhHHHHHHHHh
Q 001262 639 T--RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPE------SDRFLRLLELLG 709 (1112)
Q Consensus 639 ~--~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~-~~i~q~~~~~~~------~~k~~~ll~~l~ 709 (1112)
. .++.....+.++|++|||++......+.. +....+.+....... ......+.+... ..--..++..+.
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 2 23344557889999999987654443321 222222222221100 001111111110 001134556666
Q ss_pred hhhcCC-eEEEEeCCHH------------------------------------------------------------HHH
Q 001262 710 EWYEKG-KILIFVHSQE------------------------------------------------------------KCD 728 (1112)
Q Consensus 710 ~~~~~~-~vLIF~~s~~------------------------------------------------------------~~~ 728 (1112)
+....+ ++|||+|.+. .++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 555444 8999987521 346
Q ss_pred HHHHHHHhc--CCCeeeecCCCCH--HHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCC--CC--------
Q 001262 729 ALFRDLLKH--GYPCLSLHGAKDQ--TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP--NH-------- 794 (1112)
Q Consensus 729 ~l~~~L~~~--~~~~~~ihg~~~~--~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p--~s-------- 794 (1112)
.++..|... ++++..+|+++.+ .++..++..|.+|+.+|||+|+++++|+|+|+|++|+++|+. -+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 777777765 7889999999974 678999999999999999999999999999999999766543 22
Q ss_pred --HHHHHHHHccccCCCCccEEEEEecC
Q 001262 795 --YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 795 --~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
...|+|++||+||.+..|.+++....
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 36789999999999999999976543
No 86
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.9e-30 Score=287.09 Aligned_cols=309 Identities=20% Similarity=0.249 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+++-.+.|.+|-.++-+||+|+||||||++.-..+... . . ...|.++-+.-|.|..|+.+ ..+++..+|++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea--G---y-tk~gk~IgcTQPRRVAAmSV---AaRVA~EMgvk 337 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA--G---Y-TKGGKKIGCTQPRRVAAMSV---AARVAEEMGVK 337 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc--c---c-ccCCceEeecCcchHHHHHH---HHHHHHHhCcc
Confidence 46667888888899999999999999998633333321 1 0 11244455666999999854 55667788998
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHhcCCCC
Q 001262 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~~~~~~ 649 (1112)
...-+|++..++++.. ..+.|.++|.|+|+..+... .+|.++++||||||| |-+..+....+..-+..++|+.
T Consensus 338 LG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred cccccceEEEeccccC--cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 8888899888888765 45899999999999887654 589999999999999 8888888888888888889999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh---cCCeEEEEeCCHHH
Q 001262 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~ 726 (1112)
.+|+.|||+ +.+.|...|-.-|++...+.+ + .+..++...++.+.+...+..+.+.+ +.|.||||...++.
T Consensus 412 KllIsSAT~--DAekFS~fFDdapIF~iPGRR-y---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATM--DAEKFSAFFDDAPIFRIPGRR-Y---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeecccc--CHHHHHHhccCCcEEeccCcc-c---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999999 566777777777876555443 2 24445666677777777666655443 46899999999999
Q ss_pred HHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC------
Q 001262 727 CDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------ 791 (1112)
Q Consensus 727 ~~~l~~~L~~~---------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~------ 791 (1112)
++.+...|... .+-+++||+.+|.+.+..|++--..|..+|++||++|+..|.|++|.+||+-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 98888877653 356889999999999999999999999999999999999999999999998554
Q ss_pred ------------CCCHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 792 ------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 792 ------------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
|.|-+...||.||+||+| +|.||.||+.+
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 556778899999999998 99999999954
No 87
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=288.08 Aligned_cols=309 Identities=21% Similarity=0.260 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001262 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
.+-.+.+..+-.++-+|++|+||||||++.-..++..-.. ..|. +.+.-|.|..|.- ..++++..++..+
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~------~~g~-I~~TQPRRVAavs---lA~RVAeE~~~~l 123 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA------SSGK-IACTQPRRVAAVS---LAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc------cCCc-EEeecCchHHHHH---HHHHHHHHhCCCc
Confidence 3445677778888999999999999999755444433111 1233 5666699988884 4556666777777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHhcCCCCc
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~~~~~~q 650 (1112)
...+|++..+++... ..+.|.++|.|.|+..+... ..|+.+++||||||| |-+..+....+.+-+...+++..
T Consensus 124 G~~VGY~IRFed~ts--~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDSTS--KDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CceeeeEEEecccCC--CceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 777777777666443 35899999999999888654 579999999999999 77777766676666667778899
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHh---hhhcCCeEEEEeCCHHHH
Q 001262 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG---EWYEKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~---~~~~~~~vLIF~~s~~~~ 727 (1112)
+|+||||+ +...|...|.+-|+ +.+.++.++ |..++...+..+.+...+..+. ...+.|.+|||.++++++
T Consensus 198 lIimSATl--da~kfS~yF~~a~i-~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATL--DAEKFSEYFNNAPI-LTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeee--cHHHHHHHhcCCce-EeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999 45566666655565 566666655 3333443444455444443333 334678999999999999
Q ss_pred HHHHHHHHhc----CC----CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC--------
Q 001262 728 DALFRDLLKH----GY----PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-------- 791 (1112)
Q Consensus 728 ~~l~~~L~~~----~~----~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~-------- 791 (1112)
+.++..|.+. +- -++++||.|+.+++.+++..-..|..+|+|||++++..|.|+++.+||+-++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999875 11 2578999999999999999999999999999999999999999999997444
Q ss_pred ----------CCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 792 ----------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 ----------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
|.|.+...||.||+||+| +|.||.||++.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 668899999999999998 9999999998764
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=7.2e-28 Score=290.09 Aligned_cols=183 Identities=17% Similarity=0.270 Sum_probs=143.0
Q ss_pred hHhhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHcCCC
Q 001262 436 KEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR-----KLNYEKP---MPIQAQALPVIMSGRD 506 (1112)
Q Consensus 436 ~~~~~~~~~~~~~~r~~~~~~v-~~~~~p~pi~~~~~~~l~~~l~~~l~-----~~~~~~p---t~iQ~~ai~~il~g~d 506 (1112)
+.+..++.+++...-..+...+ .|... ..+ -...|++...+...+. .+||..| +|+|.|+||.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~l-d~~-l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESL-DKL-LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCch-HHH-HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 3466777777654333333222 12111 000 1356888888888776 6899999 9999999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+|+.++||+|||++|++|++..+.. +..++||+||++||.|+++++..++..+|+++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 9999999999999999999988764 22389999999999999999999999999999999999999988766
Q ss_pred HhcCCeEEEeCchHH-HHHHHhcCCCcc----ccCCceEEEeccchhhh
Q 001262 587 LKRGTEIVVCTPGRM-IDILCTSGGKIT----NLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 587 l~~g~~IiV~Tp~~L-~~~l~~~~~~~~----~l~~i~~vViDEah~~~ 630 (1112)
+ +++|+||||++| .++|..+..... ....+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5 499999999999 999876431111 12356899999999875
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.4e-27 Score=295.55 Aligned_cols=314 Identities=20% Similarity=0.219 Sum_probs=207.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++...|+|+|..+......+.-+|+.+|||+|||.++++.+...+.. +....++|++||+++++|++..+..++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 33458999999886554456678889999999999988877654432 224578999999999999999998766
Q ss_pred hhc--CceEEEEeCCCChHHHH--------------------HHHhc-------CCeEEEeCchHHHHHHHhcCCCcccc
Q 001262 565 KVM--GVRCVPVYGGSGVAQQI--------------------SELKR-------GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 565 ~~~--~i~~~~~~gg~~~~~~~--------------------~~l~~-------g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..+ ...+.+++|........ ..+.. -..|+|||...++..+.... ...+
T Consensus 356 ~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k--h~~l 433 (878)
T PRK09694 356 SKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK--HRFI 433 (878)
T ss_pred HHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc--hHHH
Confidence 543 34567777765422111 11111 15899999988875443321 1122
Q ss_pred CC----ceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHHHH-HHHHhcCC---------CeEEEecC
Q 001262 616 RR----VTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEI-LARKVLNK---------PVEIQVGG 680 (1112)
Q Consensus 616 ~~----i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~~-l~~~~l~~---------p~~i~~~~ 680 (1112)
.. -++|||||+|.+ +.-....+..++..+ .....+|+||||+|..+.. +...+... |.......
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 22 248999999975 222223344444433 2456799999999987754 33333211 11000000
Q ss_pred c---ccccc------CceEEEEec----ccchhHHHHHHHHhh-hhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCeee
Q 001262 681 R---SVVNK------DITQLVEVR----PESDRFLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKHG---YPCLS 743 (1112)
Q Consensus 681 ~---~~~~~------~i~q~~~~~----~~~~k~~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~~---~~~~~ 743 (1112)
. .+... .....+.+. ........++..|.. ...++++||||||+..|..++..|...+ +.+.+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 0 00000 011111111 111111233444433 2346789999999999999999998764 67999
Q ss_pred ecCCCCHHHH----HHHHHHh-hcCC---ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCC
Q 001262 744 LHGAKDQTDR----ESTISDF-KSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 744 ihg~~~~~~R----~~~~~~F-~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~ 810 (1112)
+||.+...+| ..+++.| ++|. ..|||||+++++|||| ++++||...+| .+.|+||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4678888 6776 4799999999999999 58999998888 6799999999999875
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6e-28 Score=291.89 Aligned_cols=321 Identities=20% Similarity=0.245 Sum_probs=229.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|. .|+++|..+--++..| -|+.++||+|||++|++|++..+.. |..|+||+||++||.|.+.++..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 453 5677777665555554 5889999999999999999977653 4568999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCCCcccc-----CCceEEEeccchhhh-cCC----
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGKITNL-----RRVTYLVMDEADRMF-DMG---- 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~~~~~~l-----~~i~~vViDEah~~~-~~~---- 633 (1112)
..+|+.+.+++||.+...+...+ .++|+|+||++| .|+|..+- ..++ ..+.|+||||||.|+ |..
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 99999999999999887775554 489999999999 89886541 1223 589999999999874 210
Q ss_pred -----------CchhHHHHHHhcCCC--------------CcEEEEecc-------------------------------
Q 001262 634 -----------FEPQITRIVQNIRPD--------------RQTVLFSAT------------------------------- 657 (1112)
Q Consensus 634 -----------f~~~i~~il~~~~~~--------------~q~il~SAT------------------------------- 657 (1112)
+...+..++..+... ...|.||-.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 112222223322221 122322222
Q ss_pred --------------------------------------------------------------------------------
Q 001262 658 -------------------------------------------------------------------------------- 657 (1112)
Q Consensus 658 -------------------------------------------------------------------------------- 657 (1112)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -----ccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHH
Q 001262 658 -----FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALF 731 (1112)
Q Consensus 658 -----~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~ 731 (1112)
.......| ..+++-++.+.+...+...... ...++.....|+..++..+...+.. .++||||+|+..++.|+
T Consensus 384 GMTGTa~te~~Ef-~~iY~l~Vv~IPtnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEF-QQIYNLEVVVIPTNRSMIRKDE-ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHH-HHHhCCCEEECCCCCCcceecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 11110000 0111111111111111100000 0112344557888888888766554 49999999999999999
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC------------------------------
Q 001262 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK------------------------------ 781 (1112)
Q Consensus 732 ~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~------------------------------ 781 (1112)
..|...|+++..||+.+.+.++..+...|+.|. |+|||++|+||+||.
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999994 999999999999986
Q ss_pred --------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001262 782 --------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 --------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2236777777778777789999999999999999999876653
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=6.3e-28 Score=256.94 Aligned_cols=202 Identities=51% Similarity=0.867 Sum_probs=185.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001262 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|+++++++.+.+.|..+|+..|+++|.++++.++.|+++|+++|||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 78899999999999999999999999999999999999999999999999999999999987742 135789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh
Q 001262 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|++|+.|+...+..+....++.+.+++|+.........+..+++|+|+||+.|..++.... ..+.++.+|||||+|.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADR 154 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHH
Confidence 9999999999999998888899999999998887777777789999999999999887643 5678899999999999
Q ss_pred hhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001262 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 676 (1112)
+.+.+|...+..++..++...|+++||||+++.+..++..++.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999999999865
No 92
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.1e-28 Score=297.78 Aligned_cols=308 Identities=23% Similarity=0.251 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001262 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
....+.+.++..++-+||+|+||||||++.-..++.... +.+..+.+.-|.|.-|. +...+++..++..+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAAr---svA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAAR---SVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHH---HHHHHHHHHhCCCc
Confidence 444566667778888999999999999976665655432 22335556669886666 44556666777777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHH-HHhcCCCC
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRI-VQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~i-l~~~~~~~ 649 (1112)
...+|+...++... ...+.|.|+|.|.|+..+... ..|+.|++||||||| |.++.+|...+..- +..++++.
T Consensus 123 G~~VGY~iRfe~~~--s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 123 GETVGYSIRFESKV--SPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred CceeeEEEEeeccC--CCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 77777776665432 456899999999999998765 468999999999999 88888877766654 66667789
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecc-cch-hHHHHHHHHhhhh--cCCeEEEEeCCHH
Q 001262 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESD-RFLRLLELLGEWY--EKGKILIFVHSQE 725 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~-~~~-k~~~ll~~l~~~~--~~~~vLIF~~s~~ 725 (1112)
.+|+||||+ +.+.|...|.+-|+ +.+.++.++.. ..+.... .+. -...+...+.... ..|.+|||.+.+.
T Consensus 197 KiIimSATl--d~~rfs~~f~~apv-i~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATL--DAERFSAYFGNAPV-IEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEeccc--CHHHHHHHcCCCCE-EEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999999 45566666666665 66666665532 2231111 222 1222333332222 3689999999999
Q ss_pred HHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC----------
Q 001262 726 KCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------- 791 (1112)
Q Consensus 726 ~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~---------- 791 (1112)
+++.++..|.. ..+.++++||.|+..++.++++--..|..+|++||+||+++|+|++|.+||+-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999998 3477999999999999999999888898889999999999999999999998444
Q ss_pred --------CCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001262 792 --------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 792 --------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
|.|-++..||.||+||.+ +|.||-+|++.+
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 557889999999999998 999999999744
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.3e-27 Score=287.91 Aligned_cols=323 Identities=21% Similarity=0.262 Sum_probs=230.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++..|+ |....||+|||+++.+|++..... |..|-||+||--||.|.+..+..++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 553 68889988877776766 889999999999999999987664 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+.+.++.|+....+....+ .|+|+++|..-|. |+|..+- ........+.|.||||+|.|+ |..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 99999999999887766554443 4899999998763 3333210 011124567899999999763 210
Q ss_pred ---------CchhHHHHHHhcCCC-------------------C------------------------------------
Q 001262 634 ---------FEPQITRIVQNIRPD-------------------R------------------------------------ 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------~------------------------------------ 649 (1112)
+...+..++..+... .
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 111112222211110 0
Q ss_pred -------------------------------------------------------------------------cEEEEec
Q 001262 650 -------------------------------------------------------------------------QTVLFSA 656 (1112)
Q Consensus 650 -------------------------------------------------------------------------q~il~SA 656 (1112)
++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 1223333
Q ss_pred cccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHH
Q 001262 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLL 735 (1112)
Q Consensus 657 T~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~ 735 (1112)
|.......| ...++-++...+...+....... ...+.....|+..++..+.... .+.++||||+|+..++.|+..|.
T Consensus 384 Ta~~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 384 TAKTEEEEF-REIYNMEVITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred CCHHHHHHH-HHHhCCCEEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 332222212 22222222221111111111111 1223345568888888886544 34599999999999999999999
Q ss_pred hcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---CCc-----EEEEeCCCCCHHHHHHHHccccC
Q 001262 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 736 ~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~~~p~s~~~y~QriGR~gR 807 (1112)
+.|+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.+...|+|++|||||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 99999999999999888777777777766 999999999999995 899 99999999999999999999999
Q ss_pred CCCccEEEEEecCCccC
Q 001262 808 AGRKGCAITFISEEDAK 824 (1112)
Q Consensus 808 ~G~~g~~~~~~~~~d~~ 824 (1112)
.|.+|.+.+|++.+|.-
T Consensus 540 qG~~G~s~~~~sleD~l 556 (796)
T PRK12906 540 QGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CCCCcceEEEEeccchH
Confidence 99999999999987653
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.2e-27 Score=282.75 Aligned_cols=323 Identities=23% Similarity=0.272 Sum_probs=236.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++..|+ |+.+.||+|||++|++|++...+. |..+-||+||..||.|.+.++..++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 553 68888888777666664 889999999999999999744332 3457799999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCC---CccccCCceEEEeccchhhh-cC-------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DM------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~------- 632 (1112)
..+|+++.+++|+.+..++...+. ++|+|+||+.| .|+|..+-. ....+..+.|+||||||.|+ |.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 999999999999998887766653 89999999999 888865421 01236788999999999874 10
Q ss_pred --------CCchhHHHHHHhcCCC--------C-----------------------------------------------
Q 001262 633 --------GFEPQITRIVQNIRPD--------R----------------------------------------------- 649 (1112)
Q Consensus 633 --------~f~~~i~~il~~~~~~--------~----------------------------------------------- 649 (1112)
.+...+..++..+..+ .
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0112222222222111 1
Q ss_pred --------------------------------------------------------------cEEEEeccccHHHHHHHH
Q 001262 650 --------------------------------------------------------------QTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 650 --------------------------------------------------------------q~il~SAT~~~~~~~l~~ 667 (1112)
.+.+||+|.......| .
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 383 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF-R 383 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH-H
Confidence 1334444443322222 2
Q ss_pred HhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001262 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 746 (1112)
.+++-.+...+...+........ ..+.....|+..++..+..... +.++||||+|+..++.|+..|...|+++..|||
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d-~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPD-LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 22222222222211111111111 2234556788888888876444 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC--------------------------------------cEEEE
Q 001262 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL--------------------------------------ELVIN 788 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v--------------------------------------~~VI~ 788 (1112)
. +.+|+..+..|..+...|+|||++|+||+||+-- -+||-
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 8899999999999999999999999999998642 36777
Q ss_pred eCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001262 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 789 ~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
-..|.|.---.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 778888888899999999999999999999876653
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.3e-26 Score=275.92 Aligned_cols=288 Identities=18% Similarity=0.237 Sum_probs=197.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH-
Q 001262 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE- 586 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~- 586 (1112)
|+.|+||||||.+|+..+...+.. |.++|||+|+++|+.|++..++.. ++..+..++|+.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 478999999999997766554432 668999999999999999988874 46678888888876654333
Q ss_pred --Hhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC---CchhH--HHHHHhcCCCCcEEEEeccc
Q 001262 587 --LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQI--TRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 587 --l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~---f~~~i--~~il~~~~~~~q~il~SAT~ 658 (1112)
+.. .++|||+|+..|. ..+.++++|||||+|.....+ ...+. ..++.....+.++|++|||+
T Consensus 70 ~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATP 139 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATP 139 (505)
T ss_pred HHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCC
Confidence 333 4699999998652 357789999999999765332 11122 22334445678999999997
Q ss_pred cHHHHHHHHHhcCCCeEEEecCccccc-cCceEEEEecccc--h-hHHHHHHHHhhhhcC-CeEEEEeCCHHH-------
Q 001262 659 PRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPES--D-RFLRLLELLGEWYEK-GKILIFVHSQEK------- 726 (1112)
Q Consensus 659 ~~~~~~l~~~~l~~p~~i~~~~~~~~~-~~i~q~~~~~~~~--~-k~~~ll~~l~~~~~~-~~vLIF~~s~~~------- 726 (1112)
+......+. .+....+.+....... ......+.+.... . --..|+..|...... +++|||+|++..
T Consensus 140 sles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 654333322 2222222222111100 0111111111111 1 113456666555544 589999876543
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCCeeeecCCCCHH
Q 001262 727 -----------------------------------------------------CDALFRDLLKH--GYPCLSLHGAKDQT 751 (1112)
Q Consensus 727 -----------------------------------------------------~~~l~~~L~~~--~~~~~~ihg~~~~~ 751 (1112)
.+.+...|... +.++..+|+++++.
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 46777777775 78899999999877
Q ss_pred HH--HHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC------CC------CHHHHHHHHccccCCCCccEEEEE
Q 001262 752 DR--ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------PN------HYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 752 ~R--~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~------p~------s~~~y~QriGR~gR~G~~g~~~~~ 817 (1112)
.+ ..++..|.+|+.+|||+|+++++|+|+|+|++|+.+|. |. ....|+|++||+||.+..|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 89999999999999999999999999999999865443 32 246789999999999999998864
Q ss_pred e
Q 001262 818 I 818 (1112)
Q Consensus 818 ~ 818 (1112)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.7e-27 Score=280.28 Aligned_cols=361 Identities=24% Similarity=0.316 Sum_probs=262.1
Q ss_pred CCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC---CCcEEEEccchhHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD---GPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~---~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+|+..+.++|....++.+.+ .++++|||||+|||..+++-||+.+........+. .-++++++|..+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 46667889999999998876 58999999999999999999999988764432222 247899999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH
Q 001262 561 RKFAKVMGVRCVPVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~-~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
.+.+..+||.|.-++|...... ++ .+++||||||+.. |.+...++.....+-+.++|+||.|.+.| ..++.+.
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLE 458 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLE 458 (1674)
T ss_pred HhhccccCcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHH
Confidence 9999999999999999875432 23 3589999999986 66666655555666788999999997654 4577777
Q ss_pred HHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc---chhHHH----HH
Q 001262 640 RIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---SDRFLR----LL 705 (1112)
Q Consensus 640 ~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~---~~k~~~----ll 705 (1112)
.|+.... ....++++|||+|+-. ..+.++..++--+...+.+..+.++.|.++-... ..++.. .+
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 7665442 3567999999999753 3444444444333344444444556555543332 223322 33
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCC
Q 001262 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAK 748 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg~~ 748 (1112)
+.+.+....++||||+.++++.-..+..++.. .+.++.+|.||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 34444455689999999998887777766521 46788999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eCC------CCCHHHHHHHHccccCCCCc--cEEEE
Q 001262 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRK--GCAIT 816 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~~------p~s~~~y~QriGR~gR~G~~--g~~~~ 816 (1112)
+..+|..+.+.|.+|.++|||+|-.+++|+|+|.-.++|- ||+ +.++.+.+||+||+||.+-. |..++
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999999999999999999999999888883 666 44799999999999997643 44444
Q ss_pred EecCCccCchHHHHHHHhhccCCCC--h-hHHHHHHHHHHHHhhh
Q 001262 817 FISEEDAKYSPDLVKALELSEQVVP--D-DLKALADSFMAKVNQG 858 (1112)
Q Consensus 817 ~~~~~d~~~~~~i~~~l~~~~~~vp--~-~l~~~~~~~~~~~~~~ 858 (1112)
.-...+..+ .+..-++.+| . .+..+++.+++.+..|
T Consensus 698 it~~se~qy------yls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 698 ITDHSELQY------YLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred ccCchHhhh------hHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 333333332 2333344444 2 2345667777766555
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=1.4e-26 Score=272.74 Aligned_cols=298 Identities=20% Similarity=0.271 Sum_probs=205.1
Q ss_pred CCChHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 488 EKPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+++|.+|+..+.. ++..+++.|||+|||++++..+... +..+||||||.+|+.||++.+..+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999998 8999999999999999877766543 233999999999999998776665
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001262 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
+... ..+..+||.... +.. ..|+|+|...+..... ........+++|||||||++.... ...+..
T Consensus 104 ~~~~--~~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~---l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~ 168 (442)
T COG1061 104 LLLN--DEIGIYGGGEKE-----LEP-AKVTVATVQTLARRQL---LDEFLGNEFGLIIFDEVHHLPAPS----YRRILE 168 (442)
T ss_pred cCCc--cccceecCceec-----cCC-CcEEEEEhHHHhhhhh---hhhhcccccCEEEEEccccCCcHH----HHHHHH
Confidence 4321 123334443221 111 4699999998866410 011234479999999999976543 344444
Q ss_pred hcCCCCcEEEEeccccHHHHH---HHHHhcCCCeEEEecCccccc-----cCceEEEEe-cc------------------
Q 001262 644 NIRPDRQTVLFSATFPRQVEI---LARKVLNKPVEIQVGGRSVVN-----KDITQLVEV-RP------------------ 696 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~---l~~~~l~~p~~i~~~~~~~~~-----~~i~q~~~~-~~------------------ 696 (1112)
.+.....+|+||||++..... ....++ .|+.+.+....... +.....+.+ ..
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 443333389999998743311 111111 13333332211111 000000000 00
Q ss_pred ------------------cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001262 697 ------------------ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 697 ------------------~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 758 (1112)
...+...+..++.......++||||.+..++..++..|...++ +..++|..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 0111112222222211245999999999999999999988888 899999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccC-CCCccE
Q 001262 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR-AGRKGC 813 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR-~G~~g~ 813 (1112)
.|+.|.+++||++.++..|+|+|+++++|...+..|...|+||+||+-| ...++.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999 333443
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=8.5e-25 Score=273.08 Aligned_cols=317 Identities=22% Similarity=0.292 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.|+|.+++.+++ .|..+|++.++|.|||++.+..+. ++.... +....+|||||. .|..||..+|.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~-~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLG-YLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH-HHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68899999999986 578899999999999998654443 333211 122347999996 66789999999998
Q ss_pred hhcCceEEEEeCCCChHHHHH-H-H-hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQIS-E-L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~-~-l-~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
.. +.++.++|.......+. . + ....+|||+|++.+...... +.--.+.+|||||||++-+. ...+..+
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 53 45566665443222221 1 1 23478999999988654321 12235789999999998753 3345555
Q ss_pred HHhcCCCCcEEEEeccccH----HHHHHHHHhc-----------------------------------------------
Q 001262 642 VQNIRPDRQTVLFSATFPR----QVEILARKVL----------------------------------------------- 670 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~----~~~~l~~~~l----------------------------------------------- 670 (1112)
+..+.. ...+++|+|+-. .+..++..++
T Consensus 314 lr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 666643 446889999631 1111111100
Q ss_pred --CCCeE--EEecCcc--------c-------ccc--------C-ceE---E-------------------EEecccchh
Q 001262 671 --NKPVE--IQVGGRS--------V-------VNK--------D-ITQ---L-------------------VEVRPESDR 700 (1112)
Q Consensus 671 --~~p~~--i~~~~~~--------~-------~~~--------~-i~q---~-------------------~~~~~~~~k 700 (1112)
..... +.+.-.. . .+. + +.+ . ..+...+.|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 00000 0010000 0 000 0 000 0 001112356
Q ss_pred HHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEecCcccc
Q 001262 701 FLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIATSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVaT~v~~~ 776 (1112)
+..|..+|..... +.+|||||.....++.|..+|...|+.++.|||+++..+|..++..|.+. .+.+||+|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 6666666655443 45999999999999999999999999999999999999999999999753 3467999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEE--EecCC
Q 001262 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~--~~~~~ 821 (1112)
|||+..+++||+||+||++..+.|++||+.|.|++..|++ |++..
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999998866544 55543
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.9e-25 Score=267.71 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=226.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+--++.. .-|+.++||.|||++|++|++.+.+. |..|.||+|+..||.|..+++..++
T Consensus 79 lgm-~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 453 577777765555544 45889999999999999999977654 4559999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhc-CCC--ccccCCceEEEeccchhhhc-CC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTS-GGK--ITNLRRVTYLVMDEADRMFD-MG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~-~~~--~~~l~~i~~vViDEah~~~~-~~------ 633 (1112)
..+|+++.+++++.+..+.... -+++|+|+||+.| .|+|..+ ... ......+.++||||||.|+- ..
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 9999999999999887443222 2589999999999 8888654 110 11236788999999997652 11
Q ss_pred ---------CchhHHHHHHhcCC-------------------CCcEEEEe------------------------------
Q 001262 634 ---------FEPQITRIVQNIRP-------------------DRQTVLFS------------------------------ 655 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~-------------------~~q~il~S------------------------------ 655 (1112)
+...+..++..+.. ..+.|.||
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 11111111211110 11122222
Q ss_pred --------------------------------------------------------------------------------
Q 001262 656 -------------------------------------------------------------------------------- 655 (1112)
Q Consensus 656 -------------------------------------------------------------------------------- 655 (1112)
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence
Q ss_pred ------ccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHH
Q 001262 656 ------ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCD 728 (1112)
Q Consensus 656 ------AT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~ 728 (1112)
+|.......| ..+++-.+.+.+...+........ ..+.....|+..+++.+...+..| ++||||+|+..++
T Consensus 386 kL~GMTGTa~te~~Ef-~~iY~l~Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEF-QHIYGLDTVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHH-HHHhCCCEEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 1111111111 111111111111111111111111 123344678888888887766544 8999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---------------------------
Q 001262 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK--------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~--------------------------- 781 (1112)
.|+..|...|+++..||+.+++.++..+...|+.|. |+|||++|+||+||.
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999997
Q ss_pred ----------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001262 782 ----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 782 ----------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
+=-+||--..+.|---=.|-.||+||-|.+|.+..|++-+|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 234788777888888888999999999999999999987765
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1e-24 Score=277.82 Aligned_cols=306 Identities=18% Similarity=0.233 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHHHH----c-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 488 EKPMPIQAQALPVIM----S-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|+++|..||..+. . .+.+|++++||||||.+++..+.. +... +...++|||||+.+|+.|+...|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 367999999999999875544443 3322 2346899999999999999999988
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--CCccccCCceEEEeccchhhhc---------
Q 001262 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFD--------- 631 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~--~~~~~l~~i~~vViDEah~~~~--------- 631 (1112)
+....+..+..+++........ ......|+|+|+..|...+.... .....+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 6432221222222211111111 12347899999999877653321 1123567889999999998531
Q ss_pred CC------CchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecC----ccccc-----cCceEE-----
Q 001262 632 MG------FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG----RSVVN-----KDITQL----- 691 (1112)
Q Consensus 632 ~~------f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~----~~~~~-----~~i~q~----- 691 (1112)
.+ +...+..++.++ +...|+||||+..... .+++.|+...--. .+... ..+...
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 11 134667777765 3568999999864322 2223333211000 00000 000000
Q ss_pred -----------E-----Ee----ccc-----ch----------hHHHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHH
Q 001262 692 -----------V-----EV----RPE-----SD----------RFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 692 -----------~-----~~----~~~-----~~----------k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
+ .+ .+. .. ....++..|.... ..+++||||.++.+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0 00 000 00 0011122222222 237999999999999999988
Q ss_pred HHhc------CC---CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHc
Q 001262 734 LLKH------GY---PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803 (1112)
Q Consensus 734 L~~~------~~---~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriG 803 (1112)
|... ++ .|..+||+++ ++..++..|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7653 22 4667999886 46789999999887 69999999999999999999999999999999999999
Q ss_pred cccCCC
Q 001262 804 RTGRAG 809 (1112)
Q Consensus 804 R~gR~G 809 (1112)
|+.|..
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999963
No 101
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.1e-25 Score=255.94 Aligned_cols=307 Identities=19% Similarity=0.239 Sum_probs=206.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
++.+.+|..+--+||||+||||||++.-..++..=..+.. ..++..+-|.-|.|..|..+...+..-+..++-.|...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~--~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ--SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc--CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4555566667778999999999999644444433222221 11233556677999999877655443332233333332
Q ss_pred --eCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHhc----CC
Q 001262 575 --YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNI----RP 647 (1112)
Q Consensus 575 --~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~~----~~ 647 (1112)
|.|+ +...+.|.+||.|.|+..+.+. +.|..|+.||||||| |..+.+..-.+..-+-.+ ..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 3332 3345899999999999988764 578999999999999 655544333332222111 11
Q ss_pred ------CCcEEEEeccccHHHHHHH--HHhc-CCCeEEEecCccccccCceEEEEecccchhHHHHHH---HHhhhhcCC
Q 001262 648 ------DRQTVLFSATFPRQVEILA--RKVL-NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE---LLGEWYEKG 715 (1112)
Q Consensus 648 ------~~q~il~SAT~~~~~~~l~--~~~l-~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~---~l~~~~~~~ 715 (1112)
...+|+||||+- +..|. +.++ .-|-.|.+..+.++ +..+|......+.+..... .|++.++.|
T Consensus 408 e~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 346899999983 33333 1122 22334566555544 3344444444443333222 233445789
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----------------------------------------------------------
Q 001262 716 KILIFVHSQEKCDALFRDLLKH---------------------------------------------------------- 737 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~---------------------------------------------------------- 737 (1112)
.||||+..+.+++.|+..|++.
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999653
Q ss_pred -----------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001262 738 -----------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 738 -----------------------------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
.+-|++|++=++...+.+++..-..|..-|+|||+||++
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 123677888889999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCC--------CC----------CHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 777 GLDVKELELVINFDA--------PN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~--------p~----------s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
.|.||+|.+||+.+. -. |.+..-||+|||||+| .|.||.||+..
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999997444 22 3445569999999998 99999999853
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-23 Score=221.88 Aligned_cols=298 Identities=19% Similarity=0.219 Sum_probs=208.3
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+++|.|..+-..++ +..+.|+.|-||+|||.+ +.+.+..+..+ |..+.|..|....|..++..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78999998766654 568999999999999986 44455554443 7788999999999999998888754
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-HHHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-~il~ 643 (1112)
. ++.+.++||++...- . ..+||+|...|+.+-. .+++|||||+|.+.-.. ...+. .+-.
T Consensus 169 ~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred c--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHHh----------hccEEEEeccccccccC-CHHHHHHHHH
Confidence 3 577889999885432 2 6889999888877653 47899999999764222 22333 3334
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEec-ccchhH------HHHHHHHhhhhcC-C
Q 001262 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR-PESDRF------LRLLELLGEWYEK-G 715 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~-~~~~k~------~~ll~~l~~~~~~-~ 715 (1112)
......-+|++|||++..++.-+...-. ..+.+..+.-..+-....+.+. +...++ ..|+.+|...... .
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred hhcccCceEEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 4556677999999999876543332211 1122222111111111112222 222222 2566777665544 4
Q ss_pred eEEEEeCCHHHHHHHHHHHHh-cC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCC-
Q 001262 716 KILIFVHSQEKCDALFRDLLK-HG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP- 792 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~-~~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p- 792 (1112)
++|||++++...+.++..|.. .+ ..+..+|+.. ..|...++.|++|.++|||+|.+++||+.+|+|+++|.-.--
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 899999999999999999954 33 3457788754 478889999999999999999999999999999997753322
Q ss_pred -CCHHHHHHHHccccCCC--CccEEEEEe
Q 001262 793 -NHYEDYVHRVGRTGRAG--RKGCAITFI 818 (1112)
Q Consensus 793 -~s~~~y~QriGR~gR~G--~~g~~~~~~ 818 (1112)
.+-+..+|..||+||.- ..|.++.|.
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 46788999999999952 357666554
No 103
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=246.83 Aligned_cols=324 Identities=19% Similarity=0.257 Sum_probs=235.7
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+| .|-++|++||-.+..|..|+|.|+|.+|||+++-.++.... ..+.++++..|-.+|.+|-+..|+.-
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHh
Confidence 3444 57899999999999999999999999999998766654331 24678999999999999998888876
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001262 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
+...| +++|.. ++...+.++|||.+.|..+|.++.+ .+.++.+||+||+|.+-|...+..+..++-
T Consensus 364 F~Dvg----LlTGDv-------qinPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 364 FGDVG----LLTGDV-------QINPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred ccccc----eeecce-------eeCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeee
Confidence 55444 677766 3445688999999999999988763 456799999999999998888888889999
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcC---CCeEEEec-Ccccccc----------------------CceE-------
Q 001262 644 NIRPDRQTVLFSATFPRQVEILARKVLN---KPVEIQVG-GRSVVNK----------------------DITQ------- 690 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~l~---~p~~i~~~-~~~~~~~----------------------~i~q------- 690 (1112)
.+++..++|++|||.|+..+ |+.++.. ..+.++-. .++++.. .+..
T Consensus 430 MlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~ 508 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKK 508 (1248)
T ss_pred eccccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcc
Confidence 99999999999999997654 6655532 22222211 1111100 0000
Q ss_pred ---EEE----------------------ec------ccchhH--HHHHHHHhhhhcC--CeEEEEeCCHHHHHHHHHHHH
Q 001262 691 ---LVE----------------------VR------PESDRF--LRLLELLGEWYEK--GKILIFVHSQEKCDALFRDLL 735 (1112)
Q Consensus 691 ---~~~----------------------~~------~~~~k~--~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~L~ 735 (1112)
.+. -. ....+. ...+.+|...... =++||||-++..|+..+.+|.
T Consensus 509 ~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~ 588 (1248)
T KOG0947|consen 509 EAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLT 588 (1248)
T ss_pred cccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHh
Confidence 000 00 000011 1233344333222 389999999999999999986
Q ss_pred hcC---------------------------------------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001262 736 KHG---------------------------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 736 ~~~---------------------------------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..+ -.++++|||+-+--++-+.-.|..|-++||+||..+++
T Consensus 589 ~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAM 668 (1248)
T KOG0947|consen 589 NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAM 668 (1248)
T ss_pred ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhh
Confidence 541 14678999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCC---------CCHHHHHHHHccccCCCC--ccEEEEEecCCccCchHHHHHHH
Q 001262 777 GLDVKELELVINFDAP---------NHYEDYVHRVGRTGRAGR--KGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p---------~s~~~y~QriGR~gR~G~--~g~~~~~~~~~d~~~~~~i~~~l 833 (1112)
|||.|.-.+|+. .+- -.+-.|.|++|||||-|- .|+++++.... ..-+..+.+.+
T Consensus 669 GVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li 734 (1248)
T KOG0947|consen 669 GVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLI 734 (1248)
T ss_pred hcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHh
Confidence 999998777774 221 147799999999999874 67777766544 34445555544
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.4e-23 Score=253.44 Aligned_cols=314 Identities=20% Similarity=0.270 Sum_probs=232.3
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++| .|-++|++++-.|..|..|+++||||||||++...++...+.. |.++++.+|..+|.+|.|..+..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 34555 5889999999999999999999999999999988887766554 56699999999999999998877
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHH
Q 001262 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il 642 (1112)
.+....--+.+++|... +..++.|+|+|.+.|..++..++ ..+..+.+|||||+|.|.|..-+..+..++
T Consensus 185 ~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 185 KFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred Hhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHH
Confidence 65533112345566553 34568999999999999988764 567889999999999999999999999999
Q ss_pred HhcCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEecC-ccccccCceEEE-------Eecccchh-----------
Q 001262 643 QNIRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVGG-RSVVNKDITQLV-------EVRPESDR----------- 700 (1112)
Q Consensus 643 ~~~~~~~q~il~SAT~~~~~~~l~~~~l---~~p~~i~~~~-~~~~~~~i~q~~-------~~~~~~~k----------- 700 (1112)
-.++...++|+||||+|+..+ |+.++. ..|+.+.... +++ ++.+++ .+.++..+
T Consensus 255 i~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~Rpv---PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEHRPV---PLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecCCCC---CeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 999999999999999987543 444443 3444333322 111 111111 11111111
Q ss_pred ------------------------------------HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------
Q 001262 701 ------------------------------------FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------- 737 (1112)
Q Consensus 701 ------------------------------------~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------- 737 (1112)
...++..|.. ...-++|+||-++..|+.++..|...
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 0011111111 11238999999999998887777521
Q ss_pred ---------------------CC-------------CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC
Q 001262 738 ---------------------GY-------------PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 738 ---------------------~~-------------~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
++ .+.++|+||-+..+..+...|..|-++||+||.+++.|||+|.-
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 22 24578999999999999999999999999999999999999987
Q ss_pred cEEEE----eCC----CCCHHHHHHHHccccCCCC--ccEEEEEecC
Q 001262 784 ELVIN----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISE 820 (1112)
Q Consensus 784 ~~VI~----~~~----p~s~~~y~QriGR~gR~G~--~g~~~~~~~~ 820 (1112)
++|+- ++- +-++..|.|+.||+||.|. .|.+++...+
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 77762 221 3368899999999999885 4888877443
No 105
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=4.9e-24 Score=243.64 Aligned_cols=308 Identities=20% Similarity=0.284 Sum_probs=232.7
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+-|+|.+||..|-.+..||+.|.|.+|||+++-.++...+.. ..+|++..|-.+|.+|-|.++..-++..|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 5679999999999999999999999999999988887777654 56799999999999999999887665444
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001262 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
+.+|... +...+-.+|+|.+.|..+|.+++ --+..+.+||+||+|.|-|...+..+..-+-.++.+
T Consensus 201 ----LMTGDVT-------InP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 ----LMTGDVT-------INPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ----eeeccee-------eCCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 4556553 23457889999999999998765 356789999999999999887777777777788999
Q ss_pred CcEEEEeccccHHHHHHHHHhc---CCCeEEEecCccccccCceEE---------EEecccc-----hhHHHHHHHHhh-
Q 001262 649 RQTVLFSATFPRQVEILARKVL---NKPVEIQVGGRSVVNKDITQL---------VEVRPES-----DRFLRLLELLGE- 710 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~l---~~p~~i~~~~~~~~~~~i~q~---------~~~~~~~-----~k~~~ll~~l~~- 710 (1112)
.+.|++|||+|+..+ |+.+++ ..|+.+..... .+..+.++ +.+++.. +.|...+..|..
T Consensus 267 vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999997654 555544 46655443321 11112222 1122221 223333332221
Q ss_pred ----------------------------------hh--cCCeEEEEeCCHHHHHHHHHHHHhcC----------------
Q 001262 711 ----------------------------------WY--EKGKILIFVHSQEKCDALFRDLLKHG---------------- 738 (1112)
Q Consensus 711 ----------------------------------~~--~~~~vLIF~~s~~~~~~l~~~L~~~~---------------- 738 (1112)
.. ...++|||+-++.+|+.++-.+.+..
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 11 12489999999999999988876541
Q ss_pred -----------------------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eCC
Q 001262 739 -----------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA 791 (1112)
Q Consensus 739 -----------------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~~ 791 (1112)
-.+.++|||+-+-.++-+.-.|+.|-++||+||..++.|||.|.-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 14678999999999999999999999999999999999999998877763 222
Q ss_pred C----CCHHHHHHHHccccCCCC--ccEEEEEecCC
Q 001262 792 P----NHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 792 p----~s~~~y~QriGR~gR~G~--~g~~~~~~~~~ 821 (1112)
- .+.-.|+|+.|||||-|. .|.||+++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 246689999999999885 59999998754
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=1.9e-23 Score=215.45 Aligned_cols=165 Identities=36% Similarity=0.619 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++|+.+++|+++|++||||+|||++|++|++..+... ....+||++|+++|+.|++..+..++...++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 23489999999999999999999999888889
Q ss_pred EEEEeCCCChH-HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC--
Q 001262 571 CVPVYGGSGVA-QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-- 647 (1112)
Q Consensus 571 ~~~~~gg~~~~-~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~-- 647 (1112)
+..++|+.... .....+..+++|+|+||+.|.+++... .. ++.++++|||||+|.+...++...+..|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--KI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--SS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccCcchhhcccccc--cc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 99999999866 444555567999999999999998762 23 5667999999999999988888888888888743
Q ss_pred CCcEEEEeccccHHHHH
Q 001262 648 DRQTVLFSATFPRQVEI 664 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~ 664 (1112)
..|+|++|||++..++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
No 107
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=8.1e-23 Score=247.68 Aligned_cols=313 Identities=20% Similarity=0.275 Sum_probs=231.9
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
.+..+.+.|.+|.+.+-+||.|+||+|||++....+|.+..... ....+++--|.|--|.-+++.+.. .+...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45778889999999999999999999999988877887765532 234455555999888877766544 233344
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch-hhhcCCCchhHHHHHHhcCC
Q 001262 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~~f~~~i~~il~~~~~ 647 (1112)
-.|...++..+ .....+.+++||.|.|++.|... ..+..+++||+||+| |-.+.+|.-.+.+.+-..++
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 44444333331 22234789999999999998763 578899999999999 88888898888888888899
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccC----------------ceEE------------EEeccc--
Q 001262 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD----------------ITQL------------VEVRPE-- 697 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~----------------i~q~------------~~~~~~-- 697 (1112)
+.++|+||||+. .+.|...|. ....+.+.+..++... ..+. +.+...
T Consensus 319 ~LkvILMSAT~d--ae~fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLD--AELFSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecc--hHHHHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999995 444444444 4444666655443221 0000 000001
Q ss_pred -chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001262 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+-+..|+..|......|.||||.++...+..+...|... .+-+.++|+.|+..++..++.....|..+||+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 1122334444444434689999999999999999999752 25678999999999999999999999999999
Q ss_pred ecCcccccCCCCCCcEEEE--------eCCCC----------CHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 770 ATSVAARGLDVKELELVIN--------FDAPN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~--------~~~p~----------s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
||++|+.+|.|++|-+||+ ||+-. +-+.-.||.||+||. ..|.||.+|+..
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999999997 55533 345667999999998 489999999864
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=1.7e-22 Score=232.37 Aligned_cols=314 Identities=22% Similarity=0.330 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++++|.+.++++. .|-++|+..++|.|||++.+ .+|.++.... .-.||. ||+||...| ..|.++|.+|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~---~~~GPf-LVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRK---GIPGPF-LVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhc---CCCCCe-EEEeeHhhH-HHHHHHHHHhC
Confidence 68899999999986 57789999999999998744 3444444321 124665 999998888 56889999998
Q ss_pred hhcCceEEEEeCCCChHHHH-HHH--hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQI-SEL--KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~-~~l--~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
. ++++++++|.......+ ..+ ....+|+|+|++..+.--. ++.--.+.|||||||||+-+.. ..+..+
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcchh--hHHHHH
Confidence 7 56778888765333222 222 2257999999998765421 1222358899999999987642 234455
Q ss_pred HHhcCCCCcEEEEecccc-HH-----------------------------------------------------------
Q 001262 642 VQNIRPDRQTVLFSATFP-RQ----------------------------------------------------------- 661 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-~~----------------------------------------------------------- 661 (1112)
+..+.... -+|+|+|+- ++
T Consensus 312 lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 312 LREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 55554333 345555531 00
Q ss_pred ----------------------------------------------HHHHHHHhcCCCeEEEecCccccccCceEEEEec
Q 001262 662 ----------------------------------------------VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 662 ----------------------------------------------~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~ 695 (1112)
+....+++|++|..+.- ..+. +....--+++
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg--~pyttdehLv 467 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPG--PPYTTDEHLV 467 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCC--CCCCcchHHH
Confidence 11112333334432211 0110 1111111233
Q ss_pred ccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEec
Q 001262 696 PESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIAT 771 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVaT 771 (1112)
..+.|+..|-.+|..+... .+||||.......+.|..++.-.+|..+.|.|.++.++|...|+.|... .+-+|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 4456777677777666654 4999999999999999999999999999999999999999999999854 35688999
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEE--EecCC
Q 001262 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~--~~~~~ 821 (1112)
-+.+.|||+..+++||.||..|+|..-+|.+-||+|.|++..+++ |++..
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999999998766554 56544
No 109
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=5e-23 Score=243.67 Aligned_cols=343 Identities=23% Similarity=0.265 Sum_probs=242.9
Q ss_pred CCCHHHHH-HHHHCCCCCChHHHHHHH--HHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001262 473 GLTSKIME-TIRKLNYEKPMPIQAQAL--PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 473 ~l~~~l~~-~l~~~~~~~pt~iQ~~ai--~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.+++.+.. .....|+.+++.+|.+++ |.++.++++|...||+.|||+++-+.|+..+... ...++++.|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 34444444 455789999999999987 6788999999999999999999999999887653 4568999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh
Q 001262 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
...+..-...+..|+..+|+.+-+.+|..+.... .+...|.|||-++-..++..- ...-.++.+++|||||.|.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~l-ie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSL-IEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHH-HhcCCccccCcEEEeeeeee
Confidence 8888888888888999999998887766544322 233689999988754443321 01135778999999999999
Q ss_pred hcCCCchhHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccc-------cCceEE------
Q 001262 630 FDMGFEPQITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-------KDITQL------ 691 (1112)
Q Consensus 630 ~~~~f~~~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~-------~~i~q~------ 691 (1112)
.+.+....+..++..+ ....|+|+||||+|+. .+...++..-++.+ ..++++. ..+...
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~~r~~~l 430 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYESSRNKVL 430 (1008)
T ss_pred eccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheec-ccCcccchhccCCCcccccchhhHHH
Confidence 9998888877776544 3346799999999864 12333333222111 0011100 000000
Q ss_pred ---E----EecccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHHhc--------------------------
Q 001262 692 ---V----EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH-------------------------- 737 (1112)
Q Consensus 692 ---~----~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~-------------------------- 737 (1112)
. ......+. ..++.++.+..+.+ ++||||+++..|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHhhhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0 00000000 12222333333334 6999999999999887665332
Q ss_pred ------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC----CCCHHHHHHH
Q 001262 738 ------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA----PNHYEDYVHR 801 (1112)
Q Consensus 738 ------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~----p~s~~~y~Qr 801 (1112)
.+.+.++|.|+..++|..+-..|++|.+.||+||+.++.|+++|...++|-+-. +.+...|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 356889999999999999999999999999999999999999999988885322 3467899999
Q ss_pred HccccCCCC--ccEEEEEecCCccCchHHHHH
Q 001262 802 VGRTGRAGR--KGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 802 iGR~gR~G~--~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
+|||||+|- .|.+|+++.+.+......++.
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999999974 599999999888765554443
No 110
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=6.6e-23 Score=224.69 Aligned_cols=329 Identities=20% Similarity=0.272 Sum_probs=236.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+..|.....++...+.|++..-......+...+..+..++-++++|+||||||++.-..++....... ..+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~ 95 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVA 95 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------ccee
Confidence 367788888888888888775544444555566666778889999999999999865555554444321 2233
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001262 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
..-|.|..|+++ ..+++..|.+..+--+|.+..++++.. ..+-+-+||.|+|+...... ..|.++++||+|
T Consensus 96 CTQprrvaamsv---a~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~----p~l~~y~viiLD 166 (699)
T KOG0925|consen 96 CTQPRRVAAMSV---AQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD----PLLGRYGVIILD 166 (699)
T ss_pred ecCchHHHHHHH---HHHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC----cccccccEEEec
Confidence 444999888865 556677888888888888888877643 22455689999998876554 468899999999
Q ss_pred cch-hhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHH
Q 001262 625 EAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 625 Eah-~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||| |.+..+....+.+-+..-+++..+|+||||+ ....|-..|.+-|+ +.+.+. ..+..++.-..+.+.+..
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl--~a~Kfq~yf~n~Pl-l~vpg~----~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATL--DAEKFQRYFGNAPL-LAVPGT----HPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeeccc--chHHHHHHhCCCCe-eecCCC----CceEEEecCCCChhHHHH
Confidence 999 7776665555555555556899999999998 44455555555555 555441 223333433445566665
Q ss_pred HHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhh---cC--Ccc
Q 001262 704 LLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFK---SN--VCN 766 (1112)
Q Consensus 704 ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~---------~~~~~~ihg~~~~~~R~~~~~~F~---~g--~~~ 766 (1112)
.+..+.+.+ ..|.+|||..+.++++..|..+... .+.|+.+| +.++..+++-.. +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 555544433 4689999999999999999988743 35788888 334444544332 23 368
Q ss_pred EEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 767 LLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~~~------------------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
|+|+|++++..|.|++|.+||+.++ |.|-....||.||+||+. +|.|+.||++.
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 9999999999999999999998544 678888999999999984 99999999964
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=9.6e-21 Score=230.87 Aligned_cols=131 Identities=21% Similarity=0.330 Sum_probs=117.7
Q ss_pred cccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001262 695 RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+...++..|+..|..+.. +.++||||+++..++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||++
T Consensus 422 ~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 422 RPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred eeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3445677788888877654 458999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeC-----CCCCHHHHHHHHccccCCCCccEEEEEecCCccCch
Q 001262 774 AARGLDVKELELVINFD-----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~-----~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~ 826 (1112)
+++|+|+|++++||+++ +|.+...|+||+|||||. ..|.|++|++..+..+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQ 558 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHH
Confidence 99999999999999988 799999999999999998 58999999987655433
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.6e-21 Score=243.16 Aligned_cols=337 Identities=21% Similarity=0.255 Sum_probs=221.1
Q ss_pred CChHHHHHHHHHHHcC---C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIMSG---R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++.|..++..++.. . .+++.||||+|||++.+++++..+... ....++++++.|++.++.+++..+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3488999999988743 4 788899999999999999999877653 1257889999999999999999999877
Q ss_pred hhcCceEEEEeCCCChHHHHHH-----H---------hcCCeEEEeCchHHHHHHHhcCCCc-cccCCceEEEeccchhh
Q 001262 565 KVMGVRCVPVYGGSGVAQQISE-----L---------KRGTEIVVCTPGRMIDILCTSGGKI-TNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~-----l---------~~g~~IiV~Tp~~L~~~l~~~~~~~-~~l~~i~~vViDEah~~ 629 (1112)
...++.....+|.....-.... + .....++++||-.+........... ..+-..+++||||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6554433322332221111000 0 0012445555554433221111111 01113578999999988
Q ss_pred hcCCCchhHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccc---cccCceEEEEecccchhHHHHH
Q 001262 630 FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV---VNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 630 ~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~---~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
.+......+..++..+ ..+..+|+||||+|+.+.......+.....+....... ....+.+.....-.......+.
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 7653333344444333 34678999999999999888888777665444321100 0001111110000000001122
Q ss_pred HH-HhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh----hcCCccEEEecCcccccCCC
Q 001262 706 EL-LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF----KSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 706 ~~-l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F----~~g~~~VLVaT~v~~~GlDi 780 (1112)
.. ......+++++|.|||+..|..++..|+..+..++.|||.+...+|...+..+ +.+...|+|||+|++.||||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 22 22233457999999999999999999999887899999999999999888754 45678899999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHccccCCC--CccEEEEEecCCccCchHHHHHH
Q 001262 781 KELELVINFDAPNHYEDYVHRVGRTGRAG--RKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s~~~y~QriGR~gR~G--~~g~~~~~~~~~d~~~~~~i~~~ 832 (1112)
. .+++|-= +..+...+||+||++|.| ..|.++++...............
T Consensus 511 d-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~ 561 (733)
T COG1203 511 D-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEK 561 (733)
T ss_pred c-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhc
Confidence 6 7777643 334778999999999999 57888887776655555444443
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=4.3e-21 Score=232.34 Aligned_cols=127 Identities=24% Similarity=0.300 Sum_probs=113.4
Q ss_pred ccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001262 696 PESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
....|+..++..|..... +.++||||+|+..++.|+..|...|+++..||+ .+.+|+..+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 344688888888866543 559999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCCC---CCc-----EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001262 775 ARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 775 ~~GlDi~---~v~-----~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
+||+||+ +|. +||++..|.+...|+|++|||||.|.+|.+++|++..|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 554 4588999999999999999999999999999999987654
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=6.3e-20 Score=218.26 Aligned_cols=280 Identities=23% Similarity=0.370 Sum_probs=201.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|| .|...|.--.--++.|+++-++||||.|||+- .+.|-..+.. .|.+++||+||..|+.|+++.+.+|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 454 89999999999999999999999999999964 3333333222 36889999999999999999999999
Q ss_pred hhcC-ceEEEEeCCCC-h---HHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-------
Q 001262 565 KVMG-VRCVPVYGGSG-V---AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~-i~~~~~~gg~~-~---~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...+ +.+..+|.+.- . .+.+..+.+ +.+|+|+|..-|...+..- .. .+++||++|.+|.++-
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEEEccHHHHHhccccHHH
Confidence 8766 55545466552 2 233455555 5799999988776555321 12 3588999999998753
Q ss_pred ----CCCchhH-------HHHHHhc------------------------CCCCcEEEEeccccHHH--HHHHHHhcCCCe
Q 001262 632 ----MGFEPQI-------TRIVQNI------------------------RPDRQTVLFSATFPRQV--EILARKVLNKPV 674 (1112)
Q Consensus 632 ----~~f~~~i-------~~il~~~------------------------~~~~q~il~SAT~~~~~--~~l~~~~l~~p~ 674 (1112)
.||...+ ..+...+ ...-++|+.|||..+.- ..+.+.+++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 2343321 1111111 13357899999975432 334455554
Q ss_pred EEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCC---HHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001262 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS---QEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s---~~~~~~l~~~L~~~~~~~~~ihg~~~~~ 751 (1112)
+.++.......+|...+..... ...+++++..+ +...|||++. .+.++.|+.+|..+|+++..+|+..
T Consensus 302 -FevG~~~~~LRNIvD~y~~~~~---~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~--- 372 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVESES---LEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK--- 372 (1187)
T ss_pred -CccCccchhhhheeeeeccCcc---HHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc---
Confidence 3455555555666666655533 34444455443 2367999999 9999999999999999999999833
Q ss_pred HHHHHHHHhhcCCccEEEec----CcccccCCCCC-CcEEEEeCCC
Q 001262 752 DRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAP 792 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~~~p 792 (1112)
...++.|..|+++|||++ .++-||||+|. +.++|+|++|
T Consensus 373 --~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 --EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred --hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999976 78899999998 8999999987
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=2e-19 Score=229.16 Aligned_cols=344 Identities=19% Similarity=0.214 Sum_probs=216.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001262 475 TSKIMETIRKLNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
++.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcH
Confidence 34566677778886 8899998776 4457889999999999999999999987754 245799999999
Q ss_pred hHHHHHHH-HHHHHhhhcC--ceEEEEeCCCChH-----H----------H-------------------HHH-------
Q 001262 551 ELVQQIHS-DIRKFAKVMG--VRCVPVYGGSGVA-----Q----------Q-------------------ISE------- 586 (1112)
Q Consensus 551 eLa~Q~~~-~~~~~~~~~~--i~~~~~~gg~~~~-----~----------~-------------------~~~------- 586 (1112)
+|..|+.. .+..+.+.++ ++++++.|+..+- . . +..
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 6766666555 7778777765320 0 0 000
Q ss_pred ------------------------------HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC---
Q 001262 587 ------------------------------LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--- 633 (1112)
Q Consensus 587 ------------------------------l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~--- 633 (1112)
....++|||+++..|+..+.... ..|....+|||||||+|.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHHHHH
Confidence 01125899999998877664322 234566899999999985310
Q ss_pred ----C-----chh----------------------------------------------------------------HHH
Q 001262 634 ----F-----EPQ----------------------------------------------------------------ITR 640 (1112)
Q Consensus 634 ----f-----~~~----------------------------------------------------------------i~~ 640 (1112)
+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000 000
Q ss_pred HHHh---------------------c---------------------------CCCCcEEEEeccccH--HHHHHHHHhc
Q 001262 641 IVQN---------------------I---------------------------RPDRQTVLFSATFPR--QVEILARKVL 670 (1112)
Q Consensus 641 il~~---------------------~---------------------------~~~~q~il~SAT~~~--~~~~l~~~~l 670 (1112)
.+.. . +....+|++|||++. ....+...+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 011357899999963 2333333332
Q ss_pred CC-CeEEEecCcccc-ccCceEEEEe---c-----ccchhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHh--
Q 001262 671 NK-PVEIQVGGRSVV-NKDITQLVEV---R-----PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLK-- 736 (1112)
Q Consensus 671 ~~-p~~i~~~~~~~~-~~~i~q~~~~---~-----~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~-- 736 (1112)
-. .....+...++. ..+. ..+.. . ........+...|.... ..|++||||++...++.++..|..
T Consensus 620 l~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 22 221222111222 1111 11111 1 11122223444443322 357999999999999999999975
Q ss_pred --cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc--EEEEeCCCCC----H-------------
Q 001262 737 --HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE--LVINFDAPNH----Y------------- 795 (1112)
Q Consensus 737 --~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~--~VI~~~~p~s----~------------- 795 (1112)
.++.+ +..+.. ..|..+++.|++|...||+||+.+++|||+++.. +||+..+|.. +
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23333 333333 5788999999999999999999999999999955 6777676641 1
Q ss_pred -------------HHHHHHHccccCCCCccEEEEEecCC--ccCchHHHHHHHh
Q 001262 796 -------------EDYVHRVGRTGRAGRKGCAITFISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 796 -------------~~y~QriGR~gR~G~~g~~~~~~~~~--d~~~~~~i~~~l~ 834 (1112)
..+.|.+||+-|.....-++++++.. ...+-..+.+.|.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 22358999999987654455566554 4445556666664
No 116
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=4.6e-21 Score=212.53 Aligned_cols=346 Identities=20% Similarity=0.233 Sum_probs=251.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEE-cCCCChH--HHHHHHHHHHHHhcCCCCCCC-----------------------
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGV-AKTGSGK--TLAFVLPMLRHIKDQPPVAAG----------------------- 538 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~-a~TGsGK--T~~~llp~l~~l~~~~~~~~~----------------------- 538 (1112)
..-..+|+.|.+.+-.+.+++|++.. ...+.|+ +-+|+|.+|+||.+.+.+..+
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 33457899999999999999999876 3345666 558999999998754322111
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCc---------eEEEEeCC--------CChHHHHHHHhc------------
Q 001262 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGV---------RCVPVYGG--------SGVAQQISELKR------------ 589 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i---------~~~~~~gg--------~~~~~~~~~l~~------------ 589 (1112)
..|+||||||+|+-|..+.+.+..++....- +.-.-|+| ...+++...+..
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 1389999999999999988888776432211 11122333 112222222222
Q ss_pred -------------CCeEEEeCchHHHHHHHhcCCCc---cccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC-----
Q 001262 590 -------------GTEIVVCTPGRMIDILCTSGGKI---TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD----- 648 (1112)
Q Consensus 590 -------------g~~IiV~Tp~~L~~~l~~~~~~~---~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~----- 648 (1112)
..+||||+|-.|..++...+.+. -.|+.|.++|||.||.|+ |+.|.++..|+.+++..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCccccc
Confidence 36999999999988887544333 236889999999999887 67788999998877432
Q ss_pred -------------------CcEEEEeccccHHHHHHHHHhcCCCeE-EE---e-c--CccccccCceEEE---Ee----c
Q 001262 649 -------------------RQTVLFSATFPRQVEILARKVLNKPVE-IQ---V-G--GRSVVNKDITQLV---EV----R 695 (1112)
Q Consensus 649 -------------------~q~il~SAT~~~~~~~l~~~~l~~p~~-i~---~-~--~~~~~~~~i~q~~---~~----~ 695 (1112)
+|+|+||+-..+.+..+...+|.+..- +. + . ..+.+...+.|.+ .+ .
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 689999999888888888887765421 11 1 1 1111122233332 22 2
Q ss_pred ccchhHHHHHHHHhhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 696 PESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..+.+|..++..|...+. ...+|||+|+.-+...+.+++.+..+.+..||...+...-.++-..|..|...||+.|.
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 345788888776654432 23789999999999999999999999999999999999989999999999999999999
Q ss_pred ccc--ccCCCCCCcEEEEeCCCCCHHHHHHHH---ccccCCC----CccEEEEEecCCccCchHHHHH
Q 001262 773 VAA--RGLDVKELELVINFDAPNHYEDYVHRV---GRTGRAG----RKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 773 v~~--~GlDi~~v~~VI~~~~p~s~~~y~Qri---GR~gR~G----~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
-+. +..+|.+|..||+|.+|.+|..|...| +|+.--| ..-+|.++|++.|...+..|+-
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 887 789999999999999999998886555 4543222 2357999999999887777764
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=2.5e-19 Score=220.41 Aligned_cols=147 Identities=19% Similarity=0.323 Sum_probs=129.0
Q ss_pred cchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001262 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...++..|+..|..+.. +.++||||++...++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||++++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 34567778888877654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCC-----CCCHHHHHHHHccccCCCCccEEEEEecC---------CccCchHHHHHHHhhccCCCC
Q 001262 776 RGLDVKELELVINFDA-----PNHYEDYVHRVGRTGRAGRKGCAITFISE---------EDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~~-----p~s~~~y~QriGR~gR~G~~g~~~~~~~~---------~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+......|...++.....+|
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999875 78999999999999996 68999999984 355566667777777777888
Q ss_pred hhH
Q 001262 842 DDL 844 (1112)
Q Consensus 842 ~~l 844 (1112)
..+
T Consensus 587 ~~~ 589 (652)
T PRK05298 587 KTI 589 (652)
T ss_pred hhH
Confidence 654
No 118
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=5.7e-21 Score=230.04 Aligned_cols=367 Identities=19% Similarity=0.284 Sum_probs=229.1
Q ss_pred cccchHhhhcCHHHHHHHHhhcCce---eccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cC
Q 001262 432 YIEVKEIARMTPEEVSAYRKQLELK---IHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----SG 504 (1112)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~r~~~~~~---v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il----~g 504 (1112)
|.....|..+...++..|...-.-+ -.+...-++-..|..+...+..+.. ..++.+|-..+++++ .+
T Consensus 316 WE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~ 389 (1373)
T KOG0384|consen 316 WEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKR 389 (1373)
T ss_pred ccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhc
Confidence 3333444444455555554432211 1112222233355555554444332 678999999999987 67
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
.++|+..++|.|||++-+. +|..|.... .-.||. |||||...+ ..|..+|..++ .+++++.+|.....+.+
T Consensus 390 ~n~ILADEmgLgktvqti~-fl~~l~~~~---~~~gpf-lvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i 460 (1373)
T KOG0384|consen 390 NNCILADEMGLGKTVQTIT-FLSYLFHSL---QIHGPF-LVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLI 460 (1373)
T ss_pred ccceehhhcCCCcchHHHH-HHHHHHHhh---hccCCe-EEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHH
Confidence 8999999999999985322 222222211 113564 889997665 45778888876 56777777766555555
Q ss_pred HHHh----c-----CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 585 SELK----R-----GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 585 ~~l~----~-----g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
.... . ..+++++|+..++.--.. +.--.+.+++|||||+|-+. ...+...+..+.-. .-|++|
T Consensus 461 ~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~-----L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~-~rllit 532 (1373)
T KOG0384|consen 461 RQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE-----LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMN-HRLLIT 532 (1373)
T ss_pred HHHHheecCCccccccceeehhhHHHhccHhh-----hccCCcceeeecHHhhcCch--HHHHHHHHHHhccc-ceeeec
Confidence 4432 1 268999999987542211 11124679999999998753 22333334444332 345566
Q ss_pred cccc-HHHHHHH--------------------------------------------------------------------
Q 001262 656 ATFP-RQVEILA-------------------------------------------------------------------- 666 (1112)
Q Consensus 656 AT~~-~~~~~l~-------------------------------------------------------------------- 666 (1112)
+|+- +.+..|.
T Consensus 533 gTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQ 612 (1373)
T KOG0384|consen 533 GTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQ 612 (1373)
T ss_pred CCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHH
Confidence 6631 1222111
Q ss_pred ---------------------------------HHhcCCCeEEEecCccccccCceE------EEEecccchhHHHHHHH
Q 001262 667 ---------------------------------RKVLNKPVEIQVGGRSVVNKDITQ------LVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 667 ---------------------------------~~~l~~p~~i~~~~~~~~~~~i~q------~~~~~~~~~k~~~ll~~ 707 (1112)
+++|++|..|........ ..+.. .-.+...+.|+..|-.+
T Consensus 613 k~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~-~~~~~~~~d~~L~~lI~sSGKlVLLDKL 691 (1373)
T KOG0384|consen 613 KQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKIL-GDFRDKMRDEALQALIQSSGKLVLLDKL 691 (1373)
T ss_pred HHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHH-HhhhhcchHHHHHHHHHhcCcEEeHHHH
Confidence 111222211110000000 00000 00000011122222233
Q ss_pred HhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc---CCccEEEecCcccccCCCCCC
Q 001262 708 LGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS---NVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 708 l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~---g~~~VLVaT~v~~~GlDi~~v 783 (1112)
|..+... .+||||...+...+.|+.+|...+|++-.|.|.+..+.|..+|+.|.. ..+.+|+||-+.+-|||+..+
T Consensus 692 L~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatA 771 (1373)
T KOG0384|consen 692 LPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATA 771 (1373)
T ss_pred HHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccccc
Confidence 4333333 599999999999999999999999999999999999999999999983 467899999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHccccCCCCccE--EEEEecCCc
Q 001262 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISEED 822 (1112)
Q Consensus 784 ~~VI~~~~p~s~~~y~QriGR~gR~G~~g~--~~~~~~~~d 822 (1112)
++||+||..|+|..-+|...||+|.|++.. +|.|+|...
T Consensus 772 DTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 772 DTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999998765 677888753
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.3e-19 Score=199.04 Aligned_cols=164 Identities=23% Similarity=0.295 Sum_probs=131.8
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHH
Q 001262 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~ 727 (1112)
.|+|++|||+.+.-... .-++-+.-.+...+.+.+ .+.+.+....+..|+..|..... +.++||-+-|+..|
T Consensus 387 ~q~i~VSATPg~~E~e~---s~~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQ---SGGNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHh---ccCceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 69999999986542211 112223333333333322 34566777788888888876544 46999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCC-----CCHHHHHHHH
Q 001262 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-----NHYEDYVHRV 802 (1112)
Q Consensus 728 ~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p-----~s~~~y~Qri 802 (1112)
+.|..+|.+.|+.+..+|++...-+|..++..++.|.++|||.-+.+-.|||+|.|.+|.++|.. .|-...+|-|
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 4788999999
Q ss_pred ccccCCCCccEEEEEecC
Q 001262 803 GRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 803 GR~gR~G~~g~~~~~~~~ 820 (1112)
|||+|.- .|.+|++...
T Consensus 540 GRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 540 GRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHhhcc-CCeEEEEchh
Confidence 9999964 7889987754
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=6.5e-20 Score=212.67 Aligned_cols=311 Identities=21% Similarity=0.286 Sum_probs=208.3
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++|+|+.++.++. ++...|+..++|.|||++.+. .|..|..... -...+|||||. .|..||.++|..|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k----~~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGK----LTKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhccc----ccCceEEEccH-HHHHHHHHHHHHhC
Confidence 56799999999986 567789999999999985332 2222222211 12458999996 56689999999997
Q ss_pred hhcCceEEEEeCCCCh------------HHHH-HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001262 565 KVMGVRCVPVYGGSGV------------AQQI-SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~------------~~~~-~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
..+ ++..++|.... ..++ .....+..|+|+|+..|.- .. ....-..+.|+|+||.|++-+
T Consensus 279 p~~--rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~----~~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 279 PPF--RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI----QG-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred cce--EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc----cC-cccccccccEEEecCcccccC
Confidence 654 56666654431 0000 1112245799999886521 11 112223588999999999876
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEeccc-cHHHHHHH--------------------------------------------
Q 001262 632 MGFEPQITRIVQNIRPDRQTVLFSATF-PRQVEILA-------------------------------------------- 666 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SAT~-~~~~~~l~-------------------------------------------- 666 (1112)
.. .++...+..++ ..+-|++|+|+ .+++..|-
T Consensus 352 pn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 352 PN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred Cc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 43 34444444443 34455666663 11111111
Q ss_pred -----------------------------------------------------------------------HHhcCCCeE
Q 001262 667 -----------------------------------------------------------------------RKVLNKPVE 675 (1112)
Q Consensus 667 -----------------------------------------------------------------------~~~l~~p~~ 675 (1112)
+++|++|..
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 111111110
Q ss_pred EEecCccccccCceEEE---EecccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCH
Q 001262 676 IQVGGRSVVNKDITQLV---EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 676 i~~~~~~~~~~~i~q~~---~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~-~~~~~~~~ihg~~~~ 750 (1112)
+.-.. ....+.- -....+.|+..+..+|..|...| ++|+|..++...+.|...|. ..||.++.+.|..+.
T Consensus 509 l~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 509 LDRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPA 583 (923)
T ss_pred ccCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 00000 0000000 01112357778888888887654 99999999999999999999 589999999999999
Q ss_pred HHHHHHHHHhhcCCc--cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccE--EEEEecC
Q 001262 751 TDRESTISDFKSNVC--NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISE 820 (1112)
Q Consensus 751 ~~R~~~~~~F~~g~~--~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~--~~~~~~~ 820 (1112)
..|..++..|.++.. -+|++|.|.+-|||+.+++.||+||+.|+|..-.|..-|+.|.|++-. +|.|++.
T Consensus 584 ~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 584 ALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred chhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999997753 468899999999999999999999999999999999999999998754 4446654
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.6e-19 Score=210.38 Aligned_cols=321 Identities=19% Similarity=0.217 Sum_probs=222.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-.++.|. |....||+|||+++++|++...+. |..|.||+||--||.|-+.++..++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 554 68899999998888774 778999999999999999877654 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+++.++.++.+..+....+ .|+|+++|..-|. |+|..+- ........+.|+||||+|.|+ |..
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 99999999999988766554444 4899999988652 2332110 011224568899999999763 210
Q ss_pred --------CchhHHHHHHhcCCC---------------------------------------------------------
Q 001262 634 --------FEPQITRIVQNIRPD--------------------------------------------------------- 648 (1112)
Q Consensus 634 --------f~~~i~~il~~~~~~--------------------------------------------------------- 648 (1112)
....+..++..+..+
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 111122222222111
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001262 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef-~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL-R 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH-H
Confidence 11334444443322222 2
Q ss_pred HhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001262 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 746 (1112)
.+++-++.+.+...+....... ...+.....|+..++..+...+.. .+|||.|.++...+.|+..|.+.|+++..|+.
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~-d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEA-DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHhCCcEEECCCCCCceeecCC-CceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 2222222222222221111111 122344567888888888776554 49999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC---------------CCcEEEEeCCCCCHHHHHHHHccccCCCC
Q 001262 747 AKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK---------------ELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~---------------~v~~VI~~~~p~s~~~y~QriGR~gR~G~ 810 (1112)
.-...+ ..++. ..|. ..|.|||++|+||.||. +=-+||-...+.|--.-.|-.||+||-|.
T Consensus 460 k~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 460 KNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred CchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 644333 33332 2453 56999999999999997 33478888889998888999999999999
Q ss_pred ccEEEEEecCCcc
Q 001262 811 KGCAITFISEEDA 823 (1112)
Q Consensus 811 ~g~~~~~~~~~d~ 823 (1112)
+|.+..|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 9999999986654
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.9e-19 Score=212.15 Aligned_cols=308 Identities=19% Similarity=0.289 Sum_probs=213.6
Q ss_pred CCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 488 EKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+.+-|..|+..|... .-.++.|.||||||.+|+-.+-..+.. |.++|||+|-..|..|+...|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 35678999999999765 678999999999999988777766554 789999999999999998887775
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC---C--C
Q 001262 564 AKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM---G--F 634 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~----~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~---~--f 634 (1112)
+|..+..+++|.+..+....+. ....|||||=..| +..|.++++|||||-|--.-. + +
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4678888899888766544433 3579999995433 257889999999999953221 1 2
Q ss_pred chhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccc-cCceEEEEecccchhH-----HHHHHHH
Q 001262 635 EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRF-----LRLLELL 708 (1112)
Q Consensus 635 ~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~-~~i~q~~~~~~~~~k~-----~~ll~~l 708 (1112)
...-..++..-..+.++||-|||+. ++.+.+-.-+..-.+.+..+.... ..-.+.+.+..+.... ..|++.|
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 2233344455556788999999984 444444433333334433332211 1112222222222222 4567777
Q ss_pred hhhhc-CCeEEEEeCCHHHH------------------------------------------------------------
Q 001262 709 GEWYE-KGKILIFVHSQEKC------------------------------------------------------------ 727 (1112)
Q Consensus 709 ~~~~~-~~~vLIF~~s~~~~------------------------------------------------------------ 727 (1112)
..... +.++|||.|.+..+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 65554 45899999877654
Q ss_pred HHHHHHHHhc--CCCeeeecCCCCH--HHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC----------
Q 001262 728 DALFRDLLKH--GYPCLSLHGAKDQ--TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 728 ~~l~~~L~~~--~~~~~~ihg~~~~--~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~---------- 793 (1112)
+.+.+.|... +..++.+.++... ..-...+..|.+|+.+|||.|.+++-|+|+|++++|...|...
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 3333333332 4566677776654 3356789999999999999999999999999999988765532
Q ss_pred --CHHHHHHHHccccCCCCccEEEEEe
Q 001262 794 --HYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 794 --s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
....+.|-.||+||++.+|.+++=.
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEe
Confidence 2456778899999999999888643
No 123
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.82 E-value=1.6e-18 Score=197.81 Aligned_cols=292 Identities=18% Similarity=0.213 Sum_probs=222.2
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh-------------cCce------EEEEeCCCChHHHHHHHhcC----------
Q 001262 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------------MGVR------CVPVYGGSGVAQQISELKRG---------- 590 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~-------------~~i~------~~~~~gg~~~~~~~~~l~~g---------- 590 (1112)
.|+||||||+|..|..+.+.+..++.. +|+. ..........+.+...+..|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 699999999999999998888776644 1200 00001112233333333332
Q ss_pred ---------------CeEEEeCchHHHHHHHhcC---CCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC----
Q 001262 591 ---------------TEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---- 648 (1112)
Q Consensus 591 ---------------~~IiV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~---- 648 (1112)
+|||||+|-.|...+...+ .....|++|.++|||.||.|+ |+.|.++..++.+++..
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCC
Confidence 6999999999988887522 223448999999999999776 78899999998877432
Q ss_pred --------------------CcEEEEeccccHHHHHHHHHhcCCC---eEEEecCc-----cccccCceEEEEecc----
Q 001262 649 --------------------RQTVLFSATFPRQVEILARKVLNKP---VEIQVGGR-----SVVNKDITQLVEVRP---- 696 (1112)
Q Consensus 649 --------------------~q~il~SAT~~~~~~~l~~~~l~~p---~~i~~~~~-----~~~~~~i~q~~~~~~---- 696 (1112)
+|+|+||+...+.+..+....+.|. +.+..... ..+...+.|.+...+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 7999999999999999999877665 22222211 234456677775422
Q ss_pred ---cchhHHHHHHHHhhhh----cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001262 697 ---ESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ---~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+.++..+...+...+ ..+.+|||+++.-+...|.++|...++.++.+|...++.+-.++...|..|...||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 3456666665433322 346899999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc--ccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCC------ccEEEEEecCCccCchHHHHHH
Q 001262 770 ATSVAA--RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR------KGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 770 aT~v~~--~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~------~g~~~~~~~~~d~~~~~~i~~~ 832 (1112)
.|.-+. +-..|.++..||+|.+|.++..|-..+.-.+.... ...|.+||+..|...++.|+-.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999887 78999999999999999999999888866555432 5799999999998888877643
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=3.6e-18 Score=211.06 Aligned_cols=322 Identities=18% Similarity=0.199 Sum_probs=191.7
Q ss_pred ChHHHHHHHHHHH----c------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 490 PMPIQAQALPVIM----S------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|+++|..|+..++ . .+..|++.+||||||++++..+...+.. ...+++|||||+.+|..|+...
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------cCCCeEEEEECcHHHHHHHHHH
Confidence 6789999998764 2 2579999999999999876665544321 2468999999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhH
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i 638 (1112)
|..+... +..+..+.......+.. ...|+|+|...|...+.........-..--+||+||||+... ..+
T Consensus 313 f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~ 382 (667)
T TIGR00348 313 FQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GEL 382 (667)
T ss_pred HHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHH
Confidence 9887531 11111222222233332 368999999999764432111111101113899999998542 234
Q ss_pred HHHHHhcCCCCcEEEEeccccHHHHHHH-HHh---cCCCeEEEecCccccccCce-EE-E-------Eecc---------
Q 001262 639 TRIVQNIRPDRQTVLFSATFPRQVEILA-RKV---LNKPVEIQVGGRSVVNKDIT-QL-V-------EVRP--------- 696 (1112)
Q Consensus 639 ~~il~~~~~~~q~il~SAT~~~~~~~l~-~~~---l~~p~~i~~~~~~~~~~~i~-q~-~-------~~~~--------- 696 (1112)
..++...-++...|+||||+-....... ..+ ++.++.. ..-...+...+. .. + .+..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 4444333356789999999853211000 111 1122211 110000000000 00 0 0000
Q ss_pred -----------------------------cchhHHHHHHHHhhhh----c--CCeEEEEeCCHHHHHHHHHHHHhc----
Q 001262 697 -----------------------------ESDRFLRLLELLGEWY----E--KGKILIFVHSQEKCDALFRDLLKH---- 737 (1112)
Q Consensus 697 -----------------------------~~~k~~~ll~~l~~~~----~--~~~vLIF~~s~~~~~~l~~~L~~~---- 737 (1112)
....+..+...+...+ . .++++|||.++..|..+...|...
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000111122222221 1 379999999999999999988664
Q ss_pred -CCCeeeecCCCCHH---------------------HHHHHHHHhhc-CCccEEEecCcccccCCCCCCcEEEEeCCCCC
Q 001262 738 -GYPCLSLHGAKDQT---------------------DRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINFDAPNH 794 (1112)
Q Consensus 738 -~~~~~~ihg~~~~~---------------------~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s 794 (1112)
+..++.+++..... ....++..|++ +..+|||+++++.+|+|+|.+++++..-+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 34566677654332 12468889976 67899999999999999999999997666554
Q ss_pred HHHHHHHHccccCC-C--Cc-cEEEEEecCCccCchHHHHHHHh
Q 001262 795 YEDYVHRVGRTGRA-G--RK-GCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G--~~-g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
..++|.+||+.|. + +. |.++-|+.. ...|.++|.
T Consensus 622 -h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~ 659 (667)
T TIGR00348 622 -HGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALS 659 (667)
T ss_pred -cHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHH
Confidence 4689999999994 2 22 444445442 345555553
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.8e-18 Score=207.82 Aligned_cols=322 Identities=18% Similarity=0.206 Sum_probs=217.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+--++. ..-|..+.||+|||+++++|++...+. |..|.||+||--||.|-+.++..++
T Consensus 79 lG-m~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hC-CCcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 55 367777776655554 446888999999999999999876554 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+.+.++.++.+..+....+. ++|+|+|..-| .|+|..+- ........+.|+||||+|.+| |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999998887666554444 99999999986 33332210 011124778999999999764 210
Q ss_pred ---------CchhHHHHHHhcCC--------------------CC-----------------------------------
Q 001262 634 ---------FEPQITRIVQNIRP--------------------DR----------------------------------- 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~--------------------~~----------------------------------- 649 (1112)
+...+..++..+.. .+
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 11111222222210 00
Q ss_pred --------------------------------------------------------------------------------
Q 001262 650 -------------------------------------------------------------------------------- 649 (1112)
Q Consensus 650 -------------------------------------------------------------------------------- 649 (1112)
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHH
Q 001262 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCD 728 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~ 728 (1112)
.+.+||+|....... ...+++-++.+.+...+........ .++.....|+..++..+...+.. .+|||.|.|++..+
T Consensus 386 kLsGMTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 386 KLSGMTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hhccCCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 122222222221111 1122222222222222221111111 23344567888888888877654 49999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccEEEecCcccccCCCC--------------------------
Q 001262 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLLIATSVAARGLDVK-------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VLVaT~v~~~GlDi~-------------------------- 781 (1112)
.|+..|...|++.-+|+......+ ..++. ..| ...|.|||++|+||.||.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999888887644332 22332 455 457999999999999995
Q ss_pred -----------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001262 782 -----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 -----------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2347777788888888889999999999999999999876543
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=1.4e-18 Score=204.61 Aligned_cols=299 Identities=20% Similarity=0.212 Sum_probs=195.2
Q ss_pred CCCChHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001262 487 YEKPMPIQAQALPVIM----SG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il----~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
-..|+.+|..||..+. .| +.+|+++.||+|||.+++..+...+.. +.-.++|+|+-+..|+.|.+..+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 3468999999998765 44 358999999999999877665555443 346789999999999999999988
Q ss_pred HHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC--CccccCCceEEEeccchhhhcCCCchhHH
Q 001262 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 562 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~--~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
.+.... -.+..+.+.... ..+.|.|+|+..|...+..... ..+....+++||||||||-. .....
T Consensus 237 ~~~P~~-~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~ 303 (875)
T COG4096 237 DFLPFG-TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWS 303 (875)
T ss_pred HhCCCc-cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhH
Confidence 886542 222222221111 1489999999999888865421 22334569999999999844 33444
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHHHhc-CCCeEEEec----------------------CccccccC---------
Q 001262 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQVG----------------------GRSVVNKD--------- 687 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~~~l-~~p~~i~~~----------------------~~~~~~~~--------- 687 (1112)
.|+.++..- +++++||+...+..-...|+ +.|+...-- ..+.....
T Consensus 304 ~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 666666433 34449997654433333333 444332210 00000000
Q ss_pred --c---eEEEEeccc------chhHHHHHHHHhhhhc-------CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeee
Q 001262 688 --I---TQLVEVRPE------SDRFLRLLELLGEWYE-------KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSL 744 (1112)
Q Consensus 688 --i---~q~~~~~~~------~~k~~~ll~~l~~~~~-------~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~i 744 (1112)
+ .+.+...+- ......+...|..+.. .+++||||.+..+|+.+...|... +--|..|
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 0 000000000 0011122223332222 258999999999999999999764 3447778
Q ss_pred cCCCCHHHHHHHHHHhhcC--CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC
Q 001262 745 HGAKDQTDRESTISDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 745 hg~~~~~~R~~~~~~F~~g--~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~ 808 (1112)
.|.-.+.+ ..+..|... -..|.|+.+++.+|||+|.|.++|++-.-.|..-|.|++||+-|.
T Consensus 462 T~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 462 TGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 88666543 446666642 356888889999999999999999999999999999999999885
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=4.4e-18 Score=179.38 Aligned_cols=188 Identities=39% Similarity=0.646 Sum_probs=157.1
Q ss_pred HCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 484 KLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++..|+++|.+++..++.. +.+++.++||+|||++++.+++.++.... ...+||++||..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 356788999999999999999 99999999999999999999998876532 45799999999999999999998
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCC-eEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001262 563 FAKVMGVRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~g~-~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
++..........+++......+..+..+. +|+++|++.|.+.+.... ..+..+.+|||||||.+....+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 87665545666777776566666666666 999999999998886543 35667899999999998865778888888
Q ss_pred HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecC
Q 001262 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 680 (1112)
+..+++..+++++|||++..+...+..++.+.+.+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999999999999988777666543
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=1.4e-17 Score=199.43 Aligned_cols=320 Identities=20% Similarity=0.244 Sum_probs=203.1
Q ss_pred CChHHHHHHHHHHHc---C-------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001262 489 KPMPIQAQALPVIMS---G-------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~---g-------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.++|+|.+++..+.. | ..+|+...+|+|||++.+..|...+...| ....--.++|||||. .|+.-|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P-~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP-QAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc-CccccccccEEEccH-HHHHHHHH
Confidence 467999999998752 2 24666779999999986655555544433 222233578999994 78899999
Q ss_pred HHHHHhhhcCceEEEEeCCCCh--HHH--HHHH---hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001262 559 DIRKFAKVMGVRCVPVYGGSGV--AQQ--ISEL---KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~--~~~--~~~l---~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+|.+|.....+....++|+... ..+ +..+ .-..-|++.+++.+.+.... ..+..+++||+||.|++-+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCCCccc
Confidence 9999987666777788888764 111 1111 11246788888888766543 4566789999999999765
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEecccc-HHH------------------------------------------------
Q 001262 632 MGFEPQITRIVQNIRPDRQTVLFSATFP-RQV------------------------------------------------ 662 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SAT~~-~~~------------------------------------------------ 662 (1112)
. ...+...|..+.- ..-|++|+|+- +++
T Consensus 391 ~--~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 3 2234444444433 33566777741 111
Q ss_pred ---HHHHHHh-----------------------------------------------------------cCCCeEEEecC
Q 001262 663 ---EILARKV-----------------------------------------------------------LNKPVEIQVGG 680 (1112)
Q Consensus 663 ---~~l~~~~-----------------------------------------------------------l~~p~~i~~~~ 680 (1112)
..+...| ++.|..+....
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 1111111 11111110000
Q ss_pred c-----cccccCc-e--EEEE----ecccchhHHHHHHHHhhhhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001262 681 R-----SVVNKDI-T--QLVE----VRPESDRFLRLLELLGEWYEK--GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 681 ~-----~~~~~~i-~--q~~~----~~~~~~k~~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg 746 (1112)
. ...+... . ..+. -...+.++..|..+|...... ..+++..|.....+.+...+.-.|+.++.+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 0 0000000 0 0000 000123444444554332221 24444445666666666666667999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe
Q 001262 747 AKDQTDRESTISDFKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
.|+..+|+.+++.|.+-. .-+|.+|.+.+.||++-+++.||.||++|+|+.-.|.++|+.|.|++-.||+|-
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999998543 346778889999999999999999999999999999999999999987776643
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=4e-17 Score=195.54 Aligned_cols=322 Identities=20% Similarity=0.258 Sum_probs=216.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++..| -|....||-|||+++.+|++...+. |..|-||+..--||..=..++..+.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 564 6888888877666666 4788999999999999999765443 5567788899999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+.|.++..+....+..... .|+|+++|..-| .|+|..+- ........+.|.||||+|.++ |..
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 99999999998887666544444 489999999876 34443221 011124678899999999753 211
Q ss_pred ---------CchhHHHHHHhcCCC-------Cc-----------------------------------------------
Q 001262 634 ---------FEPQITRIVQNIRPD-------RQ----------------------------------------------- 650 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------~q----------------------------------------------- 650 (1112)
+...+..++..+... ..
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 111222222222110 11
Q ss_pred --------------------------------------------------------------EEEEeccccHHHHHHHHH
Q 001262 651 --------------------------------------------------------------TVLFSATFPRQVEILARK 668 (1112)
Q Consensus 651 --------------------------------------------------------------~il~SAT~~~~~~~l~~~ 668 (1112)
+.+||+|.......|. .
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-D 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-H
Confidence 2233333222222222 1
Q ss_pred hcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001262 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~ 747 (1112)
+++-.+.+.+...+........ ..+.....|+..++..+...+. +.+|||.|.+++..+.|+..|...|++..+|+..
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred HhCCCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 2222221111111111111110 2234456788888888877664 4599999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCCc--------EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe
Q 001262 748 KDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKELE--------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v~--------~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~ 818 (1112)
-. +++..+-. ..|. ..|.|||++|+||.||.--. +||....|.|.---.|-.||+||-|.+|.+..|+
T Consensus 460 ~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 460 QN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred ch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 33 33333222 4564 57999999999999997432 8998889999888889999999999999999999
Q ss_pred cCCccC
Q 001262 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+-.|.-
T Consensus 537 SLeD~L 542 (925)
T PRK12903 537 SLDDQL 542 (925)
T ss_pred ecchHH
Confidence 876543
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=8.2e-17 Score=202.20 Aligned_cols=328 Identities=19% Similarity=0.242 Sum_probs=205.8
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHH
Q 001262 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSD 559 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~ 559 (1112)
.|| .+++.|.+.+..|. .+..+++.|+||+|||++|++|++... .++++||++||++|+.|+ ...
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 444 68999998655543 577899999999999999999988653 256899999999999999 577
Q ss_pred HHHHhhhcCceEEEEeCCCChH-----HH-----------------------------HHHH------------------
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVA-----QQ-----------------------------ISEL------------------ 587 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~-----~~-----------------------------~~~l------------------ 587 (1112)
+..+.+.+++.+.++.|+..+- .+ +..+
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 8888888888888888875421 00 0000
Q ss_pred -------------------hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-----Cc-------h
Q 001262 588 -------------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FE-------P 636 (1112)
Q Consensus 588 -------------------~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-----f~-------~ 636 (1112)
...++|||+++..|+..+.... .+..+.+|||||||+|.+.. .. .
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~ 467 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQ 467 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHH
Confidence 0125799999998877664432 35679999999999875311 00 0
Q ss_pred hH-------------------------------------------------------------HHHHHh--------c--
Q 001262 637 QI-------------------------------------------------------------TRIVQN--------I-- 645 (1112)
Q Consensus 637 ~i-------------------------------------------------------------~~il~~--------~-- 645 (1112)
.+ ..++.. .
T Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~ 547 (820)
T PRK07246 468 TIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEK 547 (820)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 00 000000 0
Q ss_pred -----------------------CCCCcEEEEecccc--HHHHHHHHHhcC-CCeEEEecCccccccCceEEEEec---c
Q 001262 646 -----------------------RPDRQTVLFSATFP--RQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVR---P 696 (1112)
Q Consensus 646 -----------------------~~~~q~il~SAT~~--~~~~~l~~~~l~-~p~~i~~~~~~~~~~~i~q~~~~~---~ 696 (1112)
+....+|++|||++ +... +...+.- ......+. ..... .+.+.+. +
T Consensus 548 ~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~~~~p 622 (820)
T PRK07246 548 QSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVDQDMP 622 (820)
T ss_pred CCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeCCCCC
Confidence 01135789999985 2222 3332221 11111111 11111 1111111 1
Q ss_pred ------cchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001262 697 ------ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ------~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.......+...|.... .+|++|||++|....+.++..|....+.+ ...|... .+..+++.|+.+...||+
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 1122334444443322 46899999999999999999997655555 4444322 246689999999899999
Q ss_pred ecCcccccCCCCC--CcEEEEeCCCC----C--------------------------HHHHHHHHccccCCCCccEEEEE
Q 001262 770 ATSVAARGLDVKE--LELVINFDAPN----H--------------------------YEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 770 aT~v~~~GlDi~~--v~~VI~~~~p~----s--------------------------~~~y~QriGR~gR~G~~g~~~~~ 817 (1112)
+|..+..|||+|+ ...||+..+|. + ...+.|.+||.-|....--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999974 56667766553 2 12235999999998653334555
Q ss_pred ecCC--ccCchHHHHHHHh
Q 001262 818 ISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 818 ~~~~--d~~~~~~i~~~l~ 834 (1112)
++.. ...+-..+++.|.
T Consensus 780 lD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 780 LDRRILTKSYGKQILASLA 798 (820)
T ss_pred ECCcccccHHHHHHHHhCC
Confidence 5543 3345556666664
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.78 E-value=1.4e-17 Score=200.13 Aligned_cols=322 Identities=20% Similarity=0.283 Sum_probs=210.5
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc-EEEEccchhHHHHHHHHHHHH
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV-GLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~-~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++.||++.++++. -+=+.|+|..+|.|||++.+-.+.......+.....-.+. .|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 45789999999874 2347899999999999976655554433332111222333 7999994 7999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001262 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
+.. +++...+|+......++.-.+..+|||++|..+..-+.. +.-..+.|+|+||.|-|-+. ...+.+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 886 455555666555544444445689999999988533321 11234789999999987653 334555566
Q ss_pred hcCCCCcEEEEecccc-HHHH---HHHHHh--------------------------------------------------
Q 001262 644 NIRPDRQTVLFSATFP-RQVE---ILARKV-------------------------------------------------- 669 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~-~~~~---~l~~~~-------------------------------------------------- 669 (1112)
.++... -+++|+|+- +++. .+..++
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 665544 455677731 0000 000000
Q ss_pred --------cC---------------------------C---CeEEEecCcc-ccccC---ceEE------------EEec
Q 001262 670 --------LN---------------------------K---PVEIQVGGRS-VVNKD---ITQL------------VEVR 695 (1112)
Q Consensus 670 --------l~---------------------------~---p~~i~~~~~~-~~~~~---i~q~------------~~~~ 695 (1112)
+. . .+...+.+.. ..... |.|. +...
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 00 0 0000000000 00000 0000 0000
Q ss_pred -----------------------ccchhHHHHHHHHhhhh---------------cCCeEEEEeCCHHHHHHHHHHHHhc
Q 001262 696 -----------------------PESDRFLRLLELLGEWY---------------EKGKILIFVHSQEKCDALFRDLLKH 737 (1112)
Q Consensus 696 -----------------------~~~~k~~~ll~~l~~~~---------------~~~~vLIF~~s~~~~~~l~~~L~~~ 737 (1112)
....|+..|-.+|..+. ...++||||.-+..++.+.+.|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 11224444445554432 1248999999999999999998775
Q ss_pred ---CCCeeeecCCCCHHHHHHHHHHhhcC-CccEEE-ecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCcc
Q 001262 738 ---GYPCLSLHGAKDQTDRESTISDFKSN-VCNLLI-ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 738 ---~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VLV-aT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g 812 (1112)
.+..+.+.|..++.+|.++...|.++ .++||+ +|.|.+-|||+.++++||+++-.|+|-.-+|.+-||+|.|++-
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 34456899999999999999999998 677765 6689999999999999999999999999999999999999886
Q ss_pred E--EEEEecCC
Q 001262 813 C--AITFISEE 821 (1112)
Q Consensus 813 ~--~~~~~~~~ 821 (1112)
. +|.|++..
T Consensus 1444 vVNVyRlItrG 1454 (1549)
T KOG0392|consen 1444 VVNVYRLITRG 1454 (1549)
T ss_pred eeeeeeehhcc
Confidence 5 56666653
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.77 E-value=1.6e-17 Score=192.59 Aligned_cols=319 Identities=19% Similarity=0.286 Sum_probs=210.8
Q ss_pred ChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 490 PMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+-++|.-.++++. .+-+.|+..++|.|||++.+ ..|.+|.... ..||. |||||...| ..|..+|.+||.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g----~~gpH-LVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIG----NPGPH-LVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcC----CCCCc-EEEecchhH-HHHHHHHHHhCC
Confidence 6689999999875 45577999999999998644 3444444421 24554 999999887 568899999987
Q ss_pred hcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001262 566 VMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~----~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
. ++|.+.||.......+.... .+.+|+|+|+.....-- ....++.-.++.++|+||+|.|-++. ...+..+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 56777777775555554332 25799999998653100 00111223468899999999987754 1122221
Q ss_pred HHhcCCCCcEEEEecccc-HHHHHH-------------------------------------------------------
Q 001262 642 VQNIRPDRQTVLFSATFP-RQVEIL------------------------------------------------------- 665 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-~~~~~l------------------------------------------------------- 665 (1112)
+ .++ ..+-||+|+|+- +++..|
T Consensus 548 M-~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 M-SIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred c-ccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 1 121 233466666631 000000
Q ss_pred -----------------------------------------------------------HHHhcCCCeEEEecC------
Q 001262 666 -----------------------------------------------------------ARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 666 -----------------------------------------------------------~~~~l~~p~~i~~~~------ 680 (1112)
.++..++|+.+....
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 000001111000000
Q ss_pred ---------ccccccC---------------ce---------EEEE----ecccchhHHHHHHHHhhhhcC-CeEEEEeC
Q 001262 681 ---------RSVVNKD---------------IT---------QLVE----VRPESDRFLRLLELLGEWYEK-GKILIFVH 722 (1112)
Q Consensus 681 ---------~~~~~~~---------------i~---------q~~~----~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~ 722 (1112)
......+ +. +.+. ..-.+.|+..|..+|...... .+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 0000000 00 0000 111234666666777665554 59999999
Q ss_pred CHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHH
Q 001262 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~Q 800 (1112)
.....+.|..+|...++.++.+.|.....+|+.++..|...+ .-+|++|-+.+.|||+..+++||+||+..+|-+-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999998654 568899999999999999999999999999988999
Q ss_pred HHccccCCCCcc--EEEEEecCCc
Q 001262 801 RVGRTGRAGRKG--CAITFISEED 822 (1112)
Q Consensus 801 riGR~gR~G~~g--~~~~~~~~~d 822 (1112)
.--||+|.|+.- ++|.|+++..
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999764 5666777653
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.76 E-value=1.4e-16 Score=175.93 Aligned_cols=326 Identities=15% Similarity=0.188 Sum_probs=220.7
Q ss_pred CCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 488 EKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+.|+|.+.+...+ .|..+|+..++|.|||++++..+..+....+ .|||||. .|-..|.+.+.+|+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp---------lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP---------LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc---------EEEEecH-HHhHHHHHHHHHhccc
Confidence 356799999998776 5677888889999999998877766655432 4899996 5668899999999875
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
... +.++.++...... +-....|.|.++..|..+-.. ..-..+.+||+||.|.+-+.. ......++..+.
T Consensus 267 ~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk 336 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLK 336 (689)
T ss_pred ccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhhhhHHH
Confidence 433 5556666543322 222357999999987654422 222348999999999887543 334555565566
Q ss_pred CCCcEEEEecccc-------------------HHHHHHHHHhcCCC---eEEEecCcc----------------------
Q 001262 647 PDRQTVLFSATFP-------------------RQVEILARKVLNKP---VEIQVGGRS---------------------- 682 (1112)
Q Consensus 647 ~~~q~il~SAT~~-------------------~~~~~l~~~~l~~p---~~i~~~~~~---------------------- 682 (1112)
.-.++||+|+|+. +....|+..||..- +.....+.+
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999952 22334555555421 111111100
Q ss_pred --ccccCceEEEEecccc-------------------------------------hhHHHHHHHHhhhh-----cCCeEE
Q 001262 683 --VVNKDITQLVEVRPES-------------------------------------DRFLRLLELLGEWY-----EKGKIL 718 (1112)
Q Consensus 683 --~~~~~i~q~~~~~~~~-------------------------------------~k~~~ll~~l~~~~-----~~~~vL 718 (1112)
..+..-.+.+.+.... .|...+.++|...+ +..++|
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 0111122222222110 12222334443311 234899
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccE-EEecCcccccCCCCCCcEEEEeCCCCCHH
Q 001262 719 IFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNL-LIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~V-LVaT~v~~~GlDi~~v~~VI~~~~p~s~~ 796 (1112)
|||..+...+.+...+...++..+.|.|..+..+|....+.|+.. .+.| |++-.+++.||++...++||+..++|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999954 3443 45667889999999999999999999999
Q ss_pred HHHHHHccccCCCCccEEEEEe--cC--CccCchHHHHHHH
Q 001262 797 DYVHRVGRTGRAGRKGCAITFI--SE--EDAKYSPDLVKAL 833 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~~~~~--~~--~d~~~~~~i~~~l 833 (1112)
-.+|.=.|++|.|++..+.+.| .+ -|...+..|.+.|
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999987655544 32 2444444444443
No 134
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=1.2e-17 Score=183.91 Aligned_cols=312 Identities=17% Similarity=0.199 Sum_probs=197.3
Q ss_pred CCChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 488 EKPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|+|..++..++.+ +..||+.|+|+|||++-+-+++. -...|||||.+-.-+.||...|+.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-----------ikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-----------IKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----------ecccEEEEecCccCHHHHHHHHHhhc
Confidence 46889999999999843 68999999999999975544432 14578999999999999999999987
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--C---CccccCCceEEEeccchhhhcCCCchhHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--G---KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~--~---~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
..-.-.++..+.... .....++.|+|+|+.++..--.... . ....-..++++||||+|.+..+-|...+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 654444444444331 1234678999999987632110000 0 00122568999999999876655555444
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHH-HhcCCCeE--------------EEecCccccc------------cCc-eEE
Q 001262 640 RIVQNIRPDRQTVLFSATFPRQVEILAR-KVLNKPVE--------------IQVGGRSVVN------------KDI-TQL 691 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~-~~l~~p~~--------------i~~~~~~~~~------------~~i-~q~ 691 (1112)
-+-.+. -++++||+-+.-..+.. .||-.|-. ..+.-..+.+ .+. ...
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 444444 47899997543221110 01111100 0000000000 000 000
Q ss_pred EEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh-cCCccEEE
Q 001262 692 VEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK-SNVCNLLI 769 (1112)
Q Consensus 692 ~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~-~g~~~VLV 769 (1112)
........||...--+|..+- .+.++|||..+.-....++-.|. --+|+|..+|.+|.+|++.|+ +..+.-|+
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEE
Confidence 111122334433322332222 34599999988877766666553 246899999999999999999 55678888
Q ss_pred ecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHHccccCCCC------ccEEEEEecCCccCc
Q 001262 770 ATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGR------KGCAITFISEEDAKY 825 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~~~~p~-s~~~y~QriGR~gR~G~------~g~~~~~~~~~d~~~ 825 (1112)
-+.|+...+|+|.++++|...... |--.-.||+||.-|+-+ ....|+|++.+...+
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 889999999999999999866543 55667899999998732 345666676654433
No 135
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.74 E-value=1.1e-16 Score=176.18 Aligned_cols=122 Identities=24% Similarity=0.326 Sum_probs=101.1
Q ss_pred hHHHHHHHHhhhhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcc
Q 001262 700 RFLRLLELLGEWYEK---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVA 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~---~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~ 774 (1112)
|+..|.+.|...... -+.|||.......+.+...|.+.|+.|+-+-|+|+...|..+++.|++.. +. +||+-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 445555555443333 37899999999999999999999999999999999999999999999764 44 56677888
Q ss_pred cccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCc--cEEEEEecCC
Q 001262 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK--GCAITFISEE 821 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~--g~~~~~~~~~ 821 (1112)
+..||+..++.|+++|+.|+++.-.|...|+.|.|+. =.++.|+-+.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 8999999999999999999999999999999999864 4566666543
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.73 E-value=4e-16 Score=188.49 Aligned_cols=280 Identities=19% Similarity=0.190 Sum_probs=181.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++ .+..|+.+.||.|||+++++|++...+. |..|-||+++..||.+-+.++..+.
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 565 4777777665444 4567889999999999999999755432 6678999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CCccccCCceEEEeccchhhh-cCC------
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~------ 633 (1112)
..+|+.|.++.++.+..+...... |+|+++|..-|. |+|..+- ........+.|+||||+|.|+ |..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 999999999999887766544443 899999997542 3332210 011124668899999999753 210
Q ss_pred ---------CchhHHHHHHhcCCC--------------------------------------------------------
Q 001262 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+..+
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 011111111111110
Q ss_pred ------------------------------------------------------------CcEEEEeccccHHHHHHHHH
Q 001262 649 ------------------------------------------------------------RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 649 ------------------------------------------------------------~q~il~SAT~~~~~~~l~~~ 668 (1112)
..+.+||+|.......| ..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HH
Confidence 11344444443322222 33
Q ss_pred hcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001262 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~ 747 (1112)
+++-.+.+.+...+....... ...+.....|+..++..+...... .+|||.|.|++..+.|+..|...|++..+++..
T Consensus 379 iY~l~vv~IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 379 IYNLEVVCIPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HhCCCEEECCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 333333222222222111111 122344557888888777665554 499999999999999999999999999999986
Q ss_pred CCH-HHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001262 748 KDQ-TDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 748 ~~~-~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
-.. ..=..++.. .|. ..|.|||++|+||.||.
T Consensus 458 ~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 458 PENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 422 222334433 454 56999999999999974
No 137
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=7.5e-17 Score=179.59 Aligned_cols=348 Identities=14% Similarity=0.109 Sum_probs=236.8
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..++.+.-.....+|..+|..+-.|+.+++.-.|.+||.++|.+..+..+..-+ ....|++.||.+|+.....-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 344555556777999999999999999999999999999999988876655432 23458888999988653322
Q ss_pred HHH---HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CCccccCCceEEEeccchhhhc-CC-
Q 001262 560 IRK---FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFD-MG- 633 (1112)
Q Consensus 560 ~~~---~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~-~~- 633 (1112)
+.- ..+...-.++..+.|.+....-.-+..+..++++.|..++..+..+. -+-..+-...++++||+|..+- .+
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 430 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKA 430 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhh
Confidence 111 11122334556677777776666677789999999998876543322 1222344566899999995432 11
Q ss_pred -CchhHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEecCccccccCceEEEEecc---------c
Q 001262 634 -FEPQITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRP---------E 697 (1112)
Q Consensus 634 -f~~~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~l~~p-~~i~~~~~~~~~~~i~q~~~~~~---------~ 697 (1112)
...++..++..+ ..+.|++-.|||+...+......+.-+- ..+.+++.+.. -..++.+.+ .
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCCCCCcchhhh
Confidence 112223332222 3468899999998776654443333333 33444443322 223333322 1
Q ss_pred chhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHHhc----C----CCeeeecCCCCHHHHHHHHHHhhcCCccEE
Q 001262 698 SDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH----G----YPCLSLHGAKDQTDRESTISDFKSNVCNLL 768 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~----~----~~~~~ihg~~~~~~R~~~~~~F~~g~~~VL 768 (1112)
+.++.....++.+....+ ++|-||+++..|+.|....+.. + -.+..+.||....+|.++....-.|+..-+
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 234444455555554444 8999999999999887665442 2 135678999999999999999999999999
Q ss_pred EecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEe--cCCccCchHHHHHHHhhc
Q 001262 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI--SEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~--~~~d~~~~~~i~~~l~~~ 836 (1112)
|||++++-||||.+++.|++.++|.|++.+.|+.||+||-.+...++.+. .+-|..++..=...+...
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 99999999999999999999999999999999999999998887665544 455655555444444433
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.70 E-value=8.6e-16 Score=181.18 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=116.8
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh-c
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV-M 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~-~ 567 (1112)
.|-.+|...+..+-.+..++|+|||.+|||.+-...|=.++.. .....+|+++||.+|+.|+...+...+.. .
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 5778999999999999999999999999998644444444333 23567899999999999998887765522 2
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001262 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
-.+.+.+.|.....-++.-+ .|+|+|+-|+.|..+|...........++.+||+||+|.+.++.-.-.+..++..++
T Consensus 585 ~~rg~sl~g~ltqEYsinp~--nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINPW--NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCCch--hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 22333444444333333322 499999999999888866332334568899999999999987665555556655553
Q ss_pred CCcEEEEeccccH
Q 001262 648 DRQTVLFSATFPR 660 (1112)
Q Consensus 648 ~~q~il~SAT~~~ 660 (1112)
+.+|++|||+.+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 569999999753
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=9.2e-15 Score=187.25 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=94.2
Q ss_pred HHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001262 702 LRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 702 ~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
..+...|.... .+|++|||++|......++..|..... .+..+.-++....|..+++.|+.+...||++|..+..|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 44555554433 467999999999999999999976422 12233334444567899999999988999999999999
Q ss_pred CCCCC--CcEEEEeCCCCC-H-----------------------------HHHHHHHccccCCCCccEEEEEecCC--cc
Q 001262 778 LDVKE--LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFISEE--DA 823 (1112)
Q Consensus 778 lDi~~--v~~VI~~~~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~~~~~~~~--d~ 823 (1112)
||+|+ +.+||+..+|.. + ..+.|.+||+-|....--++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99998 588988776641 1 12258899999987543355555553 44
Q ss_pred CchHHHHHHHh
Q 001262 824 KYSPDLVKALE 834 (1112)
Q Consensus 824 ~~~~~i~~~l~ 834 (1112)
.+-..+.+.|.
T Consensus 898 ~Yg~~~l~sLP 908 (928)
T PRK08074 898 SYGKYFLESLP 908 (928)
T ss_pred hHHHHHHHhCC
Confidence 55666777664
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=3e-16 Score=154.24 Aligned_cols=120 Identities=42% Similarity=0.674 Sum_probs=111.6
Q ss_pred chhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001262 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
+.+...+..++.... ..+++||||++...++.++..|...++.+..+||+++..+|..++..|.+|...|||+|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 367888888877654 4679999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEE
Q 001262 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~ 817 (1112)
|+|+|++++||++++|++...|+|++||++|.|+.|.|++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=2e-14 Score=172.83 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=77.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc----CCccEEEecCcccccCCC--------
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS----NVCNLLIATSVAARGLDV-------- 780 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~----g~~~VLVaT~v~~~GlDi-------- 780 (1112)
..|.+||.+.+...+..++..|...--..+.+.|..+ .+..+++.|+. |...||++|+.+..||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4689999999999999999999664223445666543 34667888886 478999999999999999
Q ss_pred CC--CcEEEEeCCCCC-------------------------HHHHHHHHccccCCCCc--cEEEEEecCC
Q 001262 781 KE--LELVINFDAPNH-------------------------YEDYVHRVGRTGRAGRK--GCAITFISEE 821 (1112)
Q Consensus 781 ~~--v~~VI~~~~p~s-------------------------~~~y~QriGR~gR~G~~--g~~~~~~~~~ 821 (1112)
|+ +++||+..+|.. ...+.|-+||.-|.... --+++++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 899999777631 12335888999997553 2234444443
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.8e-14 Score=173.79 Aligned_cols=279 Identities=18% Similarity=0.202 Sum_probs=179.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+--++. ..-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-+.++..+.
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 453 56777766655554 456889999999999999999876443 6678999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-----HHHHHhcCCCccccCCceEEEeccchhhh-cCC-----
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVMDEADRMF-DMG----- 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~----- 633 (1112)
..+|+.|.++.++....+.... -.|+|++||+..| .|.+..... ......+.|+||||+|.|+ |..
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEecccceeeccCCCccc
Confidence 9999999999888766554433 3599999999987 455443221 1235678899999999753 211
Q ss_pred ----------CchhHHHHHHhcCC--------------CCcEE-------------------------------------
Q 001262 634 ----------FEPQITRIVQNIRP--------------DRQTV------------------------------------- 652 (1112)
Q Consensus 634 ----------f~~~i~~il~~~~~--------------~~q~i------------------------------------- 652 (1112)
+......+...+.. ..+.|
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11111112222211 11222
Q ss_pred -----------------------------------------------------------------------EEeccccHH
Q 001262 653 -----------------------------------------------------------------------LFSATFPRQ 661 (1112)
Q Consensus 653 -----------------------------------------------------------------------l~SAT~~~~ 661 (1112)
+||+|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 223332211
Q ss_pred HHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001262 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 662 ~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
...| ..+++-++...+...+........ ..+.....|+..++..+...+.. .+|||.|.|++..+.|+..|...|++
T Consensus 388 ~~Ef-~~iY~l~Vv~IPTnkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 388 EVEF-EKTYKLEVTVIPTNRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHH-HHHhCCcEEEcCCCCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 1111 112222221111111111111111 12334467888888877776644 59999999999999999999999999
Q ss_pred eeeecCCC-CHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001262 741 CLSLHGAK-DQTDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 741 ~~~ihg~~-~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
+.+++..- ....-..++.. .|. ..|-|||++|+||.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999863 32333334432 454 56999999999999975
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=2.9e-16 Score=182.36 Aligned_cols=335 Identities=19% Similarity=0.264 Sum_probs=193.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 543 (1112)
.|+.+.. ..+...|.-..-.+|+|+|++||...+.| ...=+++.+|+|||+..|-.+ ..+. ..++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala---------~~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALA---------AARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHh---------hhhe
Confidence 4554433 33334444445568999999999999865 235567889999999765433 3322 2578
Q ss_pred EEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-------------------HHH-HHHH-----hcCCeEEEeCc
Q 001262 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV-------------------AQQ-ISEL-----KRGTEIVVCTP 598 (1112)
Q Consensus 544 LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~-------------------~~~-~~~l-----~~g~~IiV~Tp 598 (1112)
|+|||+..|..|...++..-. .+.++...++..... ... +..+ ..+--||++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 999999999999887776532 345555554443211 111 1111 12457999999
Q ss_pred hHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC-----CCcEEEEeccccHH---H--------
Q 001262 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-----DRQTVLFSATFPRQ---V-------- 662 (1112)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~-----~~q~il~SAT~~~~---~-------- 662 (1112)
+.|..+-.... .-+..+++||+|||||.......-.-...+..+.. ....+.|+||+.-- .
T Consensus 289 QSl~~i~eAQe---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 289 QSLPRIKEAQE---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred cchHHHHHHHH---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 99877655432 34678899999999985321111100111111111 12346788885210 0
Q ss_pred ----------------------HHHHHHhcCCCeEEEecC-ccccccCceEEEEeccc-------chhHHHHHHHHhhhh
Q 001262 663 ----------------------EILARKVLNKPVEIQVGG-RSVVNKDITQLVEVRPE-------SDRFLRLLELLGEWY 712 (1112)
Q Consensus 663 ----------------------~~l~~~~l~~p~~i~~~~-~~~~~~~i~q~~~~~~~-------~~k~~~ll~~l~~~~ 712 (1112)
+...+.+|.+.-.+.+.. .......+ +.....+. ..++.-...-|....
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~-~~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVL-QSVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhh-hhhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 111222233321111111 11111111 11111111 111111111111100
Q ss_pred --------------cCCeEEEEeCCHHHHHHHHHHHHhc-------------C--CCeeeecCCCCHHHHHHHHH---Hh
Q 001262 713 --------------EKGKILIFVHSQEKCDALFRDLLKH-------------G--YPCLSLHGAKDQTDRESTIS---DF 760 (1112)
Q Consensus 713 --------------~~~~vLIF~~s~~~~~~l~~~L~~~-------------~--~~~~~ihg~~~~~~R~~~~~---~F 760 (1112)
+..+.|-||.++++...++..+... + +.|-.+.|.|...+|...+. .|
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 0125788999888776665554321 2 44566779999999965554 34
Q ss_pred hcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC--CC-ccEEEEEe
Q 001262 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GR-KGCAITFI 818 (1112)
Q Consensus 761 ~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~--G~-~g~~~~~~ 818 (1112)
....++||--...++.|+|||.++.||+|++-+++.+.+|.+||+.|- |+ -|+.|+-+
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 567889998889999999999999999999999999999999999994 32 25555533
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=169.50 Aligned_cols=267 Identities=22% Similarity=0.264 Sum_probs=180.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
.+-++-+|||.||||.-++ +++.. ...+++..|.|-||..+++.+.. .|+.|-+++|.......
T Consensus 191 RkIi~H~GPTNSGKTy~AL----qrl~~--------aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL----QRLKS--------AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHHHH----HHHhh--------hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecC
Confidence 3446668999999998654 33332 34568999999999988887766 57888877776533322
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC-CCcEEEEeccccHHH
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
-. ...+..+-||.++. .--..+.+.||||++.|-|...+..+.+.+--+.. ..++.+= +.+
T Consensus 255 ~~--~~~a~hvScTVEM~-----------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psv 316 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMV-----------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSV 316 (700)
T ss_pred CC--CCcccceEEEEEEe-----------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chH
Confidence 11 12257788887753 12235889999999999988777777766543322 1222221 123
Q ss_pred HHHHHHhcC---CCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001262 663 EILARKVLN---KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 663 ~~l~~~~l~---~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~ 739 (1112)
-.+.+.++. +.+.+.. +....+-.-...++.-|... ..|.+| .|-++..+-.+...+...|.
T Consensus 317 ldlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nl-k~GDCv-V~FSkk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 317 LDLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNL-KPGDCV-VAFSKKDIFTVKKKIEKAGN 381 (700)
T ss_pred HHHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccC-CCCCeE-EEeehhhHHHHHHHHHHhcC
Confidence 334444432 2222211 11111111112344444443 345554 35578888888888988876
Q ss_pred C-eeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCCcEEEEeCCC---------CCHHHHHHHHccccC
Q 001262 740 P-CLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAP---------NHYEDYVHRVGRTGR 807 (1112)
Q Consensus 740 ~-~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p---------~s~~~y~QriGR~gR 807 (1112)
. |++|+|++|++.|...-..|.+ +.++|||||+++++|||+ +|+.||+|++- .+..+..|.+|||||
T Consensus 382 ~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 382 HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred cceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 6 9999999999999999999986 899999999999999999 89999998874 357788999999999
Q ss_pred CCC---ccEEEEEecC
Q 001262 808 AGR---KGCAITFISE 820 (1112)
Q Consensus 808 ~G~---~g~~~~~~~~ 820 (1112)
.|. .|.+.+|..+
T Consensus 461 f~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLHSE 476 (700)
T ss_pred cccCCcCceEEEeeHh
Confidence 874 4777777654
No 145
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.62 E-value=2.9e-15 Score=178.08 Aligned_cols=323 Identities=21% Similarity=0.262 Sum_probs=203.3
Q ss_pred CChHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.+||...+.++.+ +-+.|+..+||.|||++.+..+. +++... ...||. |||||+-.|.+ |..+|..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLit-YLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLIT-YLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHH-HHHHHc---ccCCCe-EEeccccccCC-chhhccccc
Confidence 667899999988763 23677888999999987544333 444321 234675 89999999865 777787776
Q ss_pred hhcCceEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001262 565 KVMGVRCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~---~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
.. +. ..+|-|+..... -.......+|+++|+..++.-- .+..--++.|+||||.|+|.+. ...+...
T Consensus 468 PS--v~-~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk-----~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~ 537 (1157)
T KOG0386|consen 468 PS--VQ-KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDK-----ALLSKISWKYMIIDEGHRMKNA--ICKLTDT 537 (1157)
T ss_pred cc--ee-eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCH-----HHHhccCCcceeecccccccch--hhHHHHH
Confidence 53 22 334445432111 1112245799999999875411 1112224679999999998542 1111222
Q ss_pred HHhcCCCCcEEEEeccc---------------------------------------------------------------
Q 001262 642 VQNIRPDRQTVLFSATF--------------------------------------------------------------- 658 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~--------------------------------------------------------------- 658 (1112)
+........-+++++|+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 22111111122233331
Q ss_pred ------------cHHH------------------------------------------HHHHHHhcCCCeEEE-ecCccc
Q 001262 659 ------------PRQV------------------------------------------EILARKVLNKPVEIQ-VGGRSV 683 (1112)
Q Consensus 659 ------------~~~~------------------------------------------~~l~~~~l~~p~~i~-~~~~~~ 683 (1112)
|..+ ....+++|+.|..+. +.....
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~ 697 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT 697 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccc
Confidence 0000 011122222221110 000000
Q ss_pred cccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001262 684 VNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
....+ ..+.-.+.|+..|-.+|-.+. .+++||+||....-.+.+..+|.-.++....+.|.....+|-..+..|..
T Consensus 698 ~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~ 774 (1157)
T KOG0386|consen 698 LHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNA 774 (1157)
T ss_pred cccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcC
Confidence 00000 011122345555555554433 35699999999999999999999999999999999999999999999985
Q ss_pred CC---ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 763 NV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 763 g~---~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
-. +.+|++|.+.+.|||+..++.||+||..|++....|+--|+.|.|+...+.+|....-..+-..|+
T Consensus 775 Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 775 PDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred CCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 43 568889999999999999999999999999999999999999999988887776654444444433
No 146
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.62 E-value=1.4e-15 Score=135.26 Aligned_cols=78 Identities=35% Similarity=0.623 Sum_probs=75.4
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCC
Q 001262 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 732 ~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G 809 (1112)
++|...++.+..+||+++..+|..+++.|.+|...|||||+++++|||+|.+++||+|++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=2.8e-14 Score=141.28 Aligned_cols=144 Identities=38% Similarity=0.568 Sum_probs=111.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+.+++.++||+|||++++..+...+.. +..+.+||++|+..|+.|+...+..+... ++.+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 368999999999999998888877554 23578999999999999999988887765 67777777777666665
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.......+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5556778999999999887775432 2345688999999999877654444333445556778899999996
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=163.73 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=92.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCCcEEEEeCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDA 791 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~~~ 791 (1112)
+.++|||+......+.|..+|.-+|+-.+.|.|....++|...++.|.... +.+|++|-..+.|||+.+++.||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 358999999999999999999999999999999999999999999999764 578889999999999999999999999
Q ss_pred CCCHHHHHHHHccccCCCCcc--EEEEEecCC
Q 001262 792 PNHYEDYVHRVGRTGRAGRKG--CAITFISEE 821 (1112)
Q Consensus 792 p~s~~~y~QriGR~gR~G~~g--~~~~~~~~~ 821 (1112)
.|++.---|.--|+.|.|+.- ..|.||+..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999766655555555555543 455666654
No 149
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.55 E-value=2.7e-13 Score=155.09 Aligned_cols=123 Identities=21% Similarity=0.369 Sum_probs=105.0
Q ss_pred chhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCccc
Q 001262 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~ 775 (1112)
+.|+..|-.+|..+.. +.++|+|+.....++.+..+|...+|..+.+.|.....+|..++.+|+... +-+|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 3444455555555443 459999999999999999999999999999999999999999999999755 45788999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCcc--EEEEEecC
Q 001262 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG--CAITFISE 820 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g--~~~~~~~~ 820 (1112)
-||++..++.||+|+..|++..-.|.+.|+.|-|+.- ++|.|++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999999764 45656654
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.53 E-value=2.6e-12 Score=159.92 Aligned_cols=128 Identities=22% Similarity=0.297 Sum_probs=86.1
Q ss_pred HHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhh----cCCccEEEecCccc
Q 001262 702 LRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFK----SNVCNLLIATSVAA 775 (1112)
Q Consensus 702 ~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~----~g~~~VLVaT~v~~ 775 (1112)
..+...|.... ..+.+|||++|....+.++..|... ++. +.++|.. .+..+++.|+ .|...||++|..+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 34444443322 3456999999999999999998743 333 4556643 4677886666 46788999999999
Q ss_pred ccCCCCC--CcEEEEeCCCC----CH--------------------------HHHHHHHccccCCCCccEEEEEecCC--
Q 001262 776 RGLDVKE--LELVINFDAPN----HY--------------------------EDYVHRVGRTGRAGRKGCAITFISEE-- 821 (1112)
Q Consensus 776 ~GlDi~~--v~~VI~~~~p~----s~--------------------------~~y~QriGR~gR~G~~g~~~~~~~~~-- 821 (1112)
.|||+|+ +.+||+..+|. ++ ..+.|.+||.-|....--+++++++.
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~ 676 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLL 676 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccccc
Confidence 9999998 78999977764 21 12248889999986543345555543
Q ss_pred ccCchHHHHHHH
Q 001262 822 DAKYSPDLVKAL 833 (1112)
Q Consensus 822 d~~~~~~i~~~l 833 (1112)
...+-..+++.|
T Consensus 677 ~~~Yg~~~l~sL 688 (697)
T PRK11747 677 TKRYGKRLLDAL 688 (697)
T ss_pred chhHHHHHHHhC
Confidence 233444555554
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=2.6e-12 Score=161.21 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=62.3
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|..++|.|.+.+..+. .+..+|+.+|||+|||++.|.|+|..+...+ ..+++++++.|..-..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 567778999998877654 6889999999999999999999998866432 3468999999999999999999
Q ss_pred HHH
Q 001262 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 885
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.53 E-value=3.2e-13 Score=155.39 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=96.8
Q ss_pred chhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh--cC-CccEEEecC
Q 001262 698 SDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK--SN-VCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~--~g-~~~VLVaT~ 772 (1112)
+.|+..++..+...+ ...+++|...-......+...|...|+....|||.....+|..+++.|. +| ..-.||+-.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 445555555555442 3457777777777778888899999999999999999999999999997 34 344556667
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEE
Q 001262 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~ 816 (1112)
+.+.|||+.+.+++|..|+-|++.---|.+-|+.|.|++..+++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 88899999999999999999999999999999999998876655
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=5.5e-14 Score=146.72 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=103.0
Q ss_pred CChHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001262 489 KPMPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
+|+++|.+++..+.. .+.+++.++||||||.+++..+..... .+||+||+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 578999999999883 688999999999999988866665532 68999999999999999997
Q ss_pred HHhhhcCceEEE-----------EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC--------CccccCCceEEE
Q 001262 562 KFAKVMGVRCVP-----------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------KITNLRRVTYLV 622 (1112)
Q Consensus 562 ~~~~~~~i~~~~-----------~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~--------~~~~l~~i~~vV 622 (1112)
.+.......... ...................|+++|...|......... .......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111111 0111111111222234578999999999877654211 112345678999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
+||||++.... .+..++. .+...+|+||||+++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999876432 1444544 456779999999863
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.50 E-value=8.7e-13 Score=161.63 Aligned_cols=313 Identities=22% Similarity=0.234 Sum_probs=181.3
Q ss_pred CCChHHHHHHHHHHHc--------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 488 EKPMPIQAQALPVIMS--------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~--------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..-+.+|-.|+..+.. |--+|-.|.||||||++=.-.|. .+.. ...|.+..|..-.|.|..|.-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457799999988864 22355569999999987554443 2222 23467788888888898888887
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHH-------------------------------------------HHhc-------
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVAQQIS-------------------------------------------ELKR------- 589 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~-------------------------------------------~l~~------- 589 (1112)
++.-+.--.-.+++++||....+... .+..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77755433344556666543322110 0000
Q ss_pred -CCeEEEeCchHHHHHHHhcCCCccccC----CceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001262 590 -GTEIVVCTPGRMIDILCTSGGKITNLR----RVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 590 -g~~IiV~Tp~~L~~~l~~~~~~~~~l~----~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
...|+|||+..++.......+....+. .-+.|||||+|..-.. ....+..++.-+ .....+|+||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 147999999998877632221111111 1357999999963211 112233333311 235679999999998764
Q ss_pred H-HHHHh----------cCC---CeEEE---ecCccccc--------------------------cCc---eEEEEeccc
Q 001262 664 I-LARKV----------LNK---PVEIQ---VGGRSVVN--------------------------KDI---TQLVEVRPE 697 (1112)
Q Consensus 664 ~-l~~~~----------l~~---p~~i~---~~~~~~~~--------------------------~~i---~q~~~~~~~ 697 (1112)
. +...| .+. |+.|. +....... ..+ -..+.+...
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 3 22222 222 22111 11100000 001 111112111
Q ss_pred c----hhHHHHHHHH----hhhh-------c-CCe----EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHH
Q 001262 698 S----DRFLRLLELL----GEWY-------E-KGK----ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQT 751 (1112)
Q Consensus 698 ~----~k~~~ll~~l----~~~~-------~-~~~----vLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~ 751 (1112)
. .....+...| ...+ + .|+ -||-++++..+..++..|... .+.+++||+..+..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 1 1111222221 1111 1 122 378888999998888888764 24588999999888
Q ss_pred HHHHHHHHh----------------------hc----CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccc
Q 001262 752 DRESTISDF----------------------KS----NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 752 ~R~~~~~~F----------------------~~----g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~ 805 (1112)
.|..+.+.. .+ +...|+|+|+|++.|+|++ .+++| .-|.++...+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhcc
Confidence 887765442 12 4568999999999999994 45554 2466788999999999
Q ss_pred cCCCC
Q 001262 806 GRAGR 810 (1112)
Q Consensus 806 gR~G~ 810 (1112)
.|.|.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99874
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=7.8e-12 Score=156.85 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCC--CcEEEEe
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKE--LELVINF 789 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~--v~~VI~~ 789 (1112)
++++|||++|...+..++..|..... -.+..+|..+. ..+++.|..+.- .|||+|..++.|||+++ +.+||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 56899999999999999999987654 24555665554 378888886655 89999999999999998 5788888
Q ss_pred CCCCC------------------------------HHHHHHHHccccCCCCccEEEEEecC
Q 001262 790 DAPNH------------------------------YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 790 ~~p~s------------------------------~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
.+|.- +..+.|.+||+-|.-...-++++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77652 22346999999996544334444443
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.2e-12 Score=159.59 Aligned_cols=126 Identities=25% Similarity=0.322 Sum_probs=102.1
Q ss_pred ccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCc
Q 001262 696 PESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSV 773 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v 773 (1112)
....|+..++..+...+..| +|||-|.|++..+.|+..|...|++.-+|+......+-. |+. ..|. ..|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAe-IVA--~AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAE-IVA--EAGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHH-HHH--hcCCCCcEEEeccC
Confidence 44568888888887766554 999999999999999999999999988888865433332 222 2343 569999999
Q ss_pred ccccCCCC--------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001262 774 AARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 774 ~~~GlDi~--------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
|+||.||. +=-+||--..+.|.-.-.|-.||+||-|.+|.+..|++-.|.-
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 99999998 4467888888999999999999999999999999999866543
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.49 E-value=2.5e-12 Score=157.06 Aligned_cols=271 Identities=11% Similarity=0.138 Sum_probs=166.1
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hh
Q 001262 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~ 588 (1112)
-+|||||.+|+-.+-..+.. |..+|||+|...|+.|+...|+..+. +..++.++++.+..+.... +.
T Consensus 168 ~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 36999999998877666543 67899999999999999998887653 2567888888877655433 33
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CC--CchhHH--HHHHhcCCCCcEEEEeccccHHH
Q 001262 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MG--FEPQIT--RIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 589 ~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~--f~~~i~--~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.| ..|||+|-.-+ +..+.++++|||||-|.-.- .+ ...+.. .++.....+..+|+.|||++-..
T Consensus 238 ~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 44 68999996643 35788999999999994321 11 222222 23344456788999999987554
Q ss_pred HHHHHHhcCCCeEEEecCccccccCce--EEEEecc------cch----hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHH
Q 001262 663 EILARKVLNKPVEIQVGGRSVVNKDIT--QLVEVRP------ESD----RFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (1112)
Q Consensus 663 ~~l~~~~l~~p~~i~~~~~~~~~~~i~--q~~~~~~------~~~----k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l 730 (1112)
...+.... ...+...... ....+- ..+.... ... --..++..|.+....|++|||+|.+..+-.|
T Consensus 308 ~~~~~~g~--~~~~~~~~~~-~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l 384 (665)
T PRK14873 308 QALVESGW--AHDLVAPRPV-VRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSL 384 (665)
T ss_pred HHHHhcCc--ceeecccccc-ccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCee
Confidence 43333211 1111111100 011111 1111100 000 1134666777666667999999987655432
Q ss_pred HH-----------------------------------------------------------HHHhc--CCCeeeecCCCC
Q 001262 731 FR-----------------------------------------------------------DLLKH--GYPCLSLHGAKD 749 (1112)
Q Consensus 731 ~~-----------------------------------------------------------~L~~~--~~~~~~ihg~~~ 749 (1112)
.. .|... +.++..+
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~----- 459 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS----- 459 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-----
Confidence 21 11110 1112111
Q ss_pred HHHHHHHHHHhhcCCccEEEecC----cccccCCCCCCcEEEEeCC------CC------CHHHHHHHHccccCCCCccE
Q 001262 750 QTDRESTISDFKSNVCNLLIATS----VAARGLDVKELELVINFDA------PN------HYEDYVHRVGRTGRAGRKGC 813 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~----v~~~GlDi~~v~~VI~~~~------p~------s~~~y~QriGR~gR~G~~g~ 813 (1112)
+++.++..|. ++.+|||+|. +++ +++.+|++.|. |. .+..+.|-+||+||.+..|.
T Consensus 460 --d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~ 531 (665)
T PRK14873 460 --GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQ 531 (665)
T ss_pred --ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCE
Confidence 2335778886 5899999998 665 36777776654 32 24455788899999998999
Q ss_pred EEEEe
Q 001262 814 AITFI 818 (1112)
Q Consensus 814 ~~~~~ 818 (1112)
+++..
T Consensus 532 V~iq~ 536 (665)
T PRK14873 532 VVVVA 536 (665)
T ss_pred EEEEe
Confidence 88764
No 158
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=3.2e-13 Score=163.42 Aligned_cols=335 Identities=19% Similarity=0.257 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001262 491 MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
.|+|.|.++.+... .++++.+|+|||||+++-++++. ......+++++|.-+.+.-++..|.+ |....|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 68999999998865 56777889999999999888875 12345789999999999877776654 555578
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-----CchhHHHHHH
Q 001262 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FEPQITRIVQ 643 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-----f~~~i~~il~ 643 (1112)
+.++.+.|..+..- .+....+|+|+||..+-.+ ...+.+++.|+||+|.+.+.. ..-.+..|-.
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l--------q~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL--------QSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHHHH--------hhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 88888877765543 2334479999999997433 146678999999999876321 1112455555
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHH----HHHHHhh-hhcCCeEE
Q 001262 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR----LLELLGE-WYEKGKIL 718 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~----ll~~l~~-~~~~~~vL 718 (1112)
.+-....++.+|..+.+. ..++...-...+.+.+..+..+...-.|.+........+.. .+..+.. ...+.+.+
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 666667788888776543 22211100111111122222222111222222222222222 2223332 23456899
Q ss_pred EEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001262 719 IFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~----------------------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
||+++++.|..++..|... .+++.+-|.+++..+..-+-..|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9999999998776655322 234444499999999999999999999999998866 77
Q ss_pred cCCCCCCcEEEE----eCC------CCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC--hhH
Q 001262 777 GLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP--DDL 844 (1112)
Q Consensus 777 GlDi~~v~~VI~----~~~------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp--~~l 844 (1112)
|+-...--+||. ||- +..+...+|++|++.| .|.|+++.......++.. +|. +.+| ..|
T Consensus 1443 ~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk---fl~---e~lPves~l 1513 (1674)
T KOG0951|consen 1443 GTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK---FLY---EPLPVESHL 1513 (1674)
T ss_pred cccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH---hcc---CcCchHHHH
Confidence 777654444442 333 3457889999999998 567998887766555433 222 2333 344
Q ss_pred HH-HHHHHHHHHh
Q 001262 845 KA-LADSFMAKVN 856 (1112)
Q Consensus 845 ~~-~~~~~~~~~~ 856 (1112)
+- +.+.|.+++.
T Consensus 1514 q~~lhd~~n~ei~ 1526 (1674)
T KOG0951|consen 1514 QHCLHDNFNAEIV 1526 (1674)
T ss_pred HHHHHhhhhHHHH
Confidence 33 4455655553
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=3.8e-13 Score=120.27 Aligned_cols=81 Identities=40% Similarity=0.651 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC
Q 001262 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 729 ~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~ 808 (1112)
.++..|...++.+..+||+++..+|..++..|..|...|||+|++++.|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 001262 809 G 809 (1112)
Q Consensus 809 G 809 (1112)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=1.2e-11 Score=161.16 Aligned_cols=133 Identities=23% Similarity=0.294 Sum_probs=110.3
Q ss_pred hhHHHHHHHH-hhhhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC--CccEEEecC
Q 001262 699 DRFLRLLELL-GEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN--VCNLLIATS 772 (1112)
Q Consensus 699 ~k~~~ll~~l-~~~~~~~---~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g--~~~VLVaT~ 772 (1112)
.|...+..+| ......+ ++|||++.....+.+...|...++.++.++|.++...|..++..|.++ ...+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5667777777 4444444 799999999999999999999999999999999999999999999986 456777888
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHH
Q 001262 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
+++.|||+...++||+||+.|++....|.+.|+.|.|++..+.++-.......-..|..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~ 830 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILE 830 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHH
Confidence 99999999999999999999999999999999999998877665444333333333333
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.40 E-value=9.8e-12 Score=146.28 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=105.7
Q ss_pred hHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHH
Q 001262 700 RFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDREST 756 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~----------------------~~~~~~ihg~~~~~~R~~~ 756 (1112)
|+..|+++|...-. +.++|||..+....+.+-.+|... |...+.|.|......|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 55556777766544 359999999999999998888542 4567889999999999999
Q ss_pred HHHhhcCC----ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001262 757 ISDFKSNV----CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 757 ~~~F~~g~----~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
...|.+-. ..+||+|-+.+-|||+-.++.||+||..|+|.--+|.|=|+.|.|+.--||+|-.-....+-..|.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIY 1284 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIY 1284 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHH
Confidence 99998543 358999999999999999999999999999999999999999999987777654434343333333
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.30 E-value=1.1e-11 Score=145.56 Aligned_cols=307 Identities=21% Similarity=0.293 Sum_probs=190.3
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEe
Q 001262 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575 (1112)
Q Consensus 496 ~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~ 575 (1112)
..+.++..+.-++|-+.||+|||..+...+|..+..... +-..-+.+.-|++..+.-+.+.+.. .-+-.++-.+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~---er~e~~g~tv 458 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVAN---ERGEEVGETC 458 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHH---hhHHhhcccc
Confidence 344455566667778999999999999999988876532 1122344555888877766544322 2222222233
Q ss_pred CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh-hhcCCCchhHHHHHHhcCCCCcEEEE
Q 001262 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-MFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 576 gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-~~~~~f~~~i~~il~~~~~~~q~il~ 654 (1112)
|....+...... .---|+.||.+.|+..+.. -+..+.++|+||.|. -.+..|...+.+-+..+.++..++++
T Consensus 459 gy~vRf~Sa~pr-pyg~i~fctvgvllr~~e~------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 459 GYNVRFDSATPR-PYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccccccccccc-cccceeeeccchhhhhhhh------cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 333332221111 1136899999999988864 466788999999994 33444555555544445555666666
Q ss_pred eccccHHHHHHHHHhcCCCeEEEecCccccccC-----ceE--------------EE-----------------Ee----
Q 001262 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKD-----ITQ--------------LV-----------------EV---- 694 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~-----i~q--------------~~-----------------~~---- 694 (1112)
|||+... +...++.+...+.+.+..++... +.+ .+ .+
T Consensus 532 satIdTd---~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 532 SATIDTD---LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hcccchh---hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 6665322 11111111111111111111000 000 00 00
Q ss_pred -----------cccchhHHHHHHHHhhhh----cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHH
Q 001262 695 -----------RPESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTD 752 (1112)
Q Consensus 695 -----------~~~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~ 752 (1112)
..+......|++.|.... -.+-|+||.+.-..+..|+..|..+ .+.++.+|+.+...+
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~e 688 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQE 688 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHh
Confidence 000111122333333322 2367999999999999999999765 468899999999999
Q ss_pred HHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHHccccCCCCccEE
Q 001262 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCA 814 (1112)
Q Consensus 753 R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~------------------p~s~~~y~QriGR~gR~G~~g~~ 814 (1112)
..++++....|..+||+.|+++...+.|.++.+||+... ..+....+||-||+||. ++|.|
T Consensus 689 qrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~ 767 (1282)
T KOG0921|consen 689 QRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFC 767 (1282)
T ss_pred hhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccc
Confidence 999999999999999999999999999999888886322 11345668999999986 47888
Q ss_pred EEEec
Q 001262 815 ITFIS 819 (1112)
Q Consensus 815 ~~~~~ 819 (1112)
+.+++
T Consensus 768 f~lcs 772 (1282)
T KOG0921|consen 768 FHLCS 772 (1282)
T ss_pred ccccH
Confidence 87765
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.29 E-value=1.9e-10 Score=138.25 Aligned_cols=288 Identities=17% Similarity=0.200 Sum_probs=178.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
.+|-+|+|||||.+.+-++-..+.. .+..+|+|+..+.|+.++...++.. ++.-...|...... .+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~-~i~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDY-IID- 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccc-ccc-
Confidence 4566999999998765554433222 3567999999999999988877653 22111122211111 000
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-------HHHHhcCCCCcEEEEecccc
Q 001262 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-------RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 587 l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-------~il~~~~~~~q~il~SAT~~ 659 (1112)
....+-++++...|..+.. ..+.++++|||||+-..+..-|.+.+. .+...++....+|++-||+.
T Consensus 119 -~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 0124667777777765531 347789999999999766543332222 23345567788999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEecCccccccCceEEEEe------------cc-----------------------cchhHHH
Q 001262 660 RQVEILARKVLNK-PVEIQVGGRSVVNKDITQLVEV------------RP-----------------------ESDRFLR 703 (1112)
Q Consensus 660 ~~~~~l~~~~l~~-p~~i~~~~~~~~~~~i~q~~~~------------~~-----------------------~~~k~~~ 703 (1112)
..+-.|+..+.+. ++.+.+.....+...-.+.+.+ .+ ..+....
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9888888776543 3444433211110000000000 00 0111122
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC
Q 001262 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+-.++.....+.+|-||+.|...++.++......+..++.++|..+..+.. . =++++|||.|+++..||++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchh
Confidence 222333333456888999999999999999999999999999987766332 2 2468999999999999999764
Q ss_pred --cEEEEeCCC----CCHHHHHHHHccccCCCCccEEEEEecCC
Q 001262 784 --ELVINFDAP----NHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 784 --~~VI~~~~p----~s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
+-|+-|=-| .++.+..|++||+-.-. ....++++...
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 334444222 23556899999986554 55666666543
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.17 E-value=6.8e-09 Score=132.77 Aligned_cols=309 Identities=19% Similarity=0.262 Sum_probs=174.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+..+|.--||||||++.+..+- .+... ...|.++|||-++.|-.|+..+|..+........ .-.+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4699999999999997554443 33332 3589999999999999999999999876543211 223333333
Q ss_pred HHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 585 SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
..|..+ ..|||+|-..|-..+....... .-..--+||+|||||. +++.....+-..+ +....++||+|+--.-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~-~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELEL-LKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccc-cCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 444434 3899999999987775531111 1222337899999993 3444444444444 34779999999742211
Q ss_pred HH-HHHhcCCCeEEEecCccccccCceEE-EEec------ccc--------------------hhH--------------
Q 001262 664 IL-ARKVLNKPVEIQVGGRSVVNKDITQL-VEVR------PES--------------------DRF-------------- 701 (1112)
Q Consensus 664 ~l-~~~~l~~p~~i~~~~~~~~~~~i~q~-~~~~------~~~--------------------~k~-------------- 701 (1112)
.- ....++..+....-........+... +... ... .++
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 12233333222211111100000000 0000 000 000
Q ss_pred ---HH----HHHHHhh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-----------C--------C----CeeeecCCCCH
Q 001262 702 ---LR----LLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-----------G--------Y----PCLSLHGAKDQ 750 (1112)
Q Consensus 702 ---~~----ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-----------~--------~----~~~~ihg~~~~ 750 (1112)
.. ++..+.. .....++.+.|.+...|..+.+.+... + + .....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 00 0111111 112357778887777555554443221 0 0 00000111 12
Q ss_pred HHHHHHHHHh--hcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC--C--CccEEEEEecCCccC
Q 001262 751 TDRESTISDF--KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--G--RKGCAITFISEEDAK 824 (1112)
Q Consensus 751 ~~R~~~~~~F--~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~--G--~~g~~~~~~~~~d~~ 824 (1112)
.........| .....+|||.++++-+|.|.|.++++. +|-|--.-..+|.+-||.|. + ..|.++.|+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g----- 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG----- 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----
Confidence 2333344443 356789999999999999999999887 56677777899999999995 3 2366666665
Q ss_pred chHHHHHHHhh
Q 001262 825 YSPDLVKALEL 835 (1112)
Q Consensus 825 ~~~~i~~~l~~ 835 (1112)
....+.+++..
T Consensus 652 l~e~l~~Al~~ 662 (962)
T COG0610 652 LKEALKKALKL 662 (962)
T ss_pred hHHHHHHHHHH
Confidence 55566666654
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.16 E-value=2.1e-10 Score=129.85 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=94.5
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 493 IQAQALPVIM-------------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 493 iQ~~ai~~il-------------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
+|..++.+++ ..+.+|++.++|+|||++.+..+. .+...... ..-..+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5778877763 335788889999999988666555 33332110 011248999999 788999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
+.+++....+++..+.|...............+|+|+|+..+.............--++.+|||||+|.+-+ ......
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccc
Confidence 999986656666665555412222223334578999999988711000000011113489999999999853 344555
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001262 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..+. ....+++|||+-
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 5555565 566889999963
No 166
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=99.13 E-value=8.8e-12 Score=134.00 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=77.7
Q ss_pred cCeEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCC-CCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001262 1011 EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIA-GPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~-~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
++..++.+|||.||.||+.+|.++++++|.+.||+.|.+||+|+++..++ ++++++||+||.|+|.+.|++||+.|+-+
T Consensus 91 ~~~~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~Ei~~~Ai~RIkgv 170 (531)
T KOG1960|consen 91 AAAAAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTAEITSKAIERIKGV 170 (531)
T ss_pred HHHHHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccHHHHHHHHhhCccc
Confidence 46778999999999999999999999999999999999999999999987 57899999999999999999999999966
Q ss_pred HHHHH
Q 001262 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
+...+
T Consensus 171 ~~~~~ 175 (531)
T KOG1960|consen 171 FMQDV 175 (531)
T ss_pred eeecc
Confidence 65554
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.04 E-value=6.3e-09 Score=126.28 Aligned_cols=314 Identities=23% Similarity=0.272 Sum_probs=189.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
.|.|-.+.-...-|.-..||-|||+++.+|+.-..+. |..+.+|+..--||.--..++..+...+|+.+.+.
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 4445555555567888999999999999998755433 55678888889999999999999999999999999
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhc---CCCccccCCceEEEeccchhhh-c--------CC---C----
Q 001262 575 YGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTS---GGKITNLRRVTYLVMDEADRMF-D--------MG---F---- 634 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~---~~~~~~l~~i~~vViDEah~~~-~--------~~---f---- 634 (1112)
..+.+..+.-.... |+|.++|...|- |+|..+ ......+..+.|.|+||+|-++ | .| .
T Consensus 156 ~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~ 233 (822)
T COG0653 156 LAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSEL 233 (822)
T ss_pred cCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchH
Confidence 99998777666655 899999987761 222111 0000123457889999999653 1 11 1
Q ss_pred chhHHHHHHhcCCC--------CcEEEEecc-cc--------------HHHH-------HH-HHHhc-CCC---------
Q 001262 635 EPQITRIVQNIRPD--------RQTVLFSAT-FP--------------RQVE-------IL-ARKVL-NKP--------- 673 (1112)
Q Consensus 635 ~~~i~~il~~~~~~--------~q~il~SAT-~~--------------~~~~-------~l-~~~~l-~~p--------- 673 (1112)
...+..++..+... ...|.|+-. +. ..+. .+ +...+ .+-
T Consensus 234 Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev 313 (822)
T COG0653 234 YKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEV 313 (822)
T ss_pred HHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeE
Confidence 12222332222111 111111111 00 0000 00 00000 110
Q ss_pred ---------------------------------------------------------------------------eEEEe
Q 001262 674 ---------------------------------------------------------------------------VEIQV 678 (1112)
Q Consensus 674 ---------------------------------------------------------------------------~~i~~ 678 (1112)
+.+.+
T Consensus 314 ~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iP 393 (822)
T COG0653 314 VIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIP 393 (822)
T ss_pred EEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeecc
Confidence 00000
Q ss_pred cCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001262 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 679 ~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~ 757 (1112)
...+....+... ..+.....|+..++..+...+. +.++||.+.+++..+.+...|.+.|++..+|...-... +.-+
T Consensus 394 Tnrp~~R~D~~D-~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~--EA~I 470 (822)
T COG0653 394 TNRPIIRLDEPD-LVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAR--EAEI 470 (822)
T ss_pred CCCcccCCCCcc-ccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHH--HHHH
Confidence 000000000000 1122345688888888877665 45999999999999999999999999987787766533 3333
Q ss_pred HHhhcCC-ccEEEecCcccccCCCCCCc-----------EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001262 758 SDFKSNV-CNLLIATSVAARGLDVKELE-----------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 758 ~~F~~g~-~~VLVaT~v~~~GlDi~~v~-----------~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
-.+ .|. .-|-|||++|+||-||.--. +||--.--.|-.--.|--||+||-|-+|.+..|++-.|
T Consensus 471 ia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 471 IAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred Hhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 333 343 45889999999999986332 22222222222233477899999999998887777544
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.01 E-value=6.8e-10 Score=107.15 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
|.-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+++.++. .++++....-+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----
Confidence 4456777899999998766666654443 367899999999999877665543 344443221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc--CCCCcEEEEeccccHH
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~--~~~~q~il~SAT~~~~ 661 (1112)
....+.-|-|+|++.+..++.. . ..+.++++||+||||-+-... . .....+..+ .....+|++|||+|..
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCCHHH-H-hhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 1234567889999999888765 3 346789999999999632111 0 111112221 2335799999999865
Q ss_pred H
Q 001262 662 V 662 (1112)
Q Consensus 662 ~ 662 (1112)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.95 E-value=8.6e-09 Score=115.21 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.7
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001262 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.95 E-value=8.6e-09 Score=115.21 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.7
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001262 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.87 E-value=6.1e-08 Score=105.43 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=99.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|=||+.+..||..=+.++..|+
T Consensus 74 ~g-~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LG-LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cC-CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 45 478899999887777776 999999999999998888776554 6678899999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---CccccCCceEEEeccchhhh
Q 001262 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~ 630 (1112)
..+|+.+.+++++.+..+...... ++|+++|...|. |+|..+-. .......+.++||||+|.|+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988655444443 789999999875 44443211 11114678899999999654
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.81 E-value=2.4e-07 Score=108.02 Aligned_cols=111 Identities=26% Similarity=0.289 Sum_probs=92.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC------------------CCeeeecCCCCHHHHHHHHHHhhcCC---ccEEEecCc
Q 001262 715 GKILIFVHSQEKCDALFRDLLKHG------------------YPCLSLHGAKDQTDRESTISDFKSNV---CNLLIATSV 773 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~~------------------~~~~~ihg~~~~~~R~~~~~~F~~g~---~~VLVaT~v 773 (1112)
.++|||.......+.+...|.+.. .+.+.+.|..+..+|.+.+..|.+-- --+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 489999999999999999987752 23457889999999999999998542 258889999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCc
Q 001262 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
..-||++-+.+.+|+|++.|++.--.|.+-|+-|.|++..||++-.--|..+
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~l 851 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSL 851 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhh
Confidence 9999999999999999999999888999999999999887777654444433
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.50 E-value=1e-06 Score=109.87 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=56.4
Q ss_pred CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC-----CC----ccE-EEEEecCCccCchHHHHHHH
Q 001262 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-----GR----KGC-AITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~-----G~----~g~-~~~~~~~~d~~~~~~i~~~l 833 (1112)
...+|++-.++..|.|.|++-.+.-+.-..|...-.|.+||.-|. |. ... -.++++.....++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999888888888889999999884 21 112 22345566677788888777
Q ss_pred hhc
Q 001262 834 ELS 836 (1112)
Q Consensus 834 ~~~ 836 (1112)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 543
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.29 E-value=9.6e-06 Score=101.44 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=45.8
Q ss_pred CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 591 ~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..|+++||..|..-|..+ ..++..|+.|||||||++....-...+.+++...++..-+.+|||.+
T Consensus 8 ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred CCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 579999999886555443 36889999999999999865444444555555555555566677764
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.22 E-value=4e-07 Score=110.60 Aligned_cols=254 Identities=22% Similarity=0.262 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 491 MPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 491 t~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|+|.+.+..+. ...++++.+|||+|||++|.+.++..+...| +.++++++|-..|+..-.+.+......-|+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCc
Confidence 356665554443 2356888899999999999999998876643 578999999999998777666665544488
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh-----
Q 001262 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN----- 644 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~----- 644 (1112)
+++-+.|..... ...+ ..++|+|+||.....+...+. ...-+.+++++|+||.|.+.. +..+.+..|...
T Consensus 1003 k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~-~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQ-TRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred eeEeccCccCCC--hhhe-ecCceEEcccccccCcccccc-chhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 999888877554 2222 247999999999877765433 334578899999999998664 434443333222
Q ss_pred --cCCCCcEEEEeccccHHHHHHHHHhcCCC------------eEEEecCccccccCceEEEEecccchhHHHHHHHHhh
Q 001262 645 --IRPDRQTVLFSATFPRQVEILARKVLNKP------------VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 645 --~~~~~q~il~SAT~~~~~~~l~~~~l~~p------------~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
..+..+.+++|--+. ....++.+....+ ..+.+.+.+ . +++ +.-...........+..
T Consensus 1078 ~~t~~~vr~~glsta~~-na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp-----~-~~~-cprm~smnkpa~qaik~ 1149 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALA-NANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFP-----G-QHY-CPRMMSMNKPAFQAIKT 1149 (1230)
T ss_pred cccCcchhhhhHhhhhh-ccHHHHHHhCCCCcCCCCcccccCCceEeecCCC-----c-hhc-chhhhhcccHHHHHHhc
Confidence 222344454443322 2233333322221 112221111 0 111 11111222344566666
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001262 711 WYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
..+..++|||+.+.......+..|.. ..-+.-+++. +..+-+.++....+...
T Consensus 1150 ~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1150 HSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNL 1206 (1230)
T ss_pred CCCCCceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccch
Confidence 66778999999887765444444432 2223334443 35555666666555443
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.17 E-value=0.00011 Score=88.49 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCC--CCccE-----------EEEEecCCccCchHHH
Q 001262 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GRKGC-----------AITFISEEDAKYSPDL 829 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~--G~~g~-----------~~~~~~~~d~~~~~~i 829 (1112)
...++|.+--++-.|.|-|+|-.++-+....|...=+|.+||.-|- ...|. -.+|+......++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3477999999999999999999999999999999999999999984 22232 2335556666677777
Q ss_pred HHHHhh
Q 001262 830 VKALEL 835 (1112)
Q Consensus 830 ~~~l~~ 835 (1112)
++-+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 776654
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.17 E-value=8.6e-06 Score=99.67 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=90.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcccccCCCCCCcEEEEeCCCC
Q 001262 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~~~GlDi~~v~~VI~~~~p~ 793 (1112)
++|||+.-...+..++..|...++....+.|.|....|...+..|..+. .. .|++..+...||++..+.+||..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999988999999999999999999999999554 23 456778889999999999999999999
Q ss_pred CHHHHHHHHccccCCCCccEEEE
Q 001262 794 HYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~~~ 816 (1112)
++..--|.+-|+.|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998765544
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.09 E-value=2.5e-05 Score=84.65 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcC-CCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 490 PMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQ-PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~-~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+.+.|..||..+++... .+|.||.|+|||.+.. .++..+... .......+..+||++||...+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56899999999999998 9999999999996433 344444110 001123477899999999999988887776
No 179
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.08 E-value=0.00059 Score=77.80 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=84.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHHHHHHHHHHhh----cCCccEE--EecCcccccCCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQTDRESTISDFK----SNVCNLL--IATSVAARGLDV 780 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~R~~~~~~F~----~g~~~VL--VaT~v~~~GlDi 780 (1112)
++.+++|+++.-..+.+.......|+ +.+.| +.-+..+-.-++..+. +|...|| ||-.-.+.|+|+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 35788999998887777666555432 33333 3223333334444443 5666666 556788899999
Q ss_pred CCCc--EEEEeCCCCCHH---------------------HH---------HHHHccccCCCCccEEEEEe-cCC----cc
Q 001262 781 KELE--LVINFDAPNHYE---------------------DY---------VHRVGRTGRAGRKGCAITFI-SEE----DA 823 (1112)
Q Consensus 781 ~~v~--~VI~~~~p~s~~---------------------~y---------~QriGR~gR~G~~g~~~~~~-~~~----d~ 823 (1112)
.+-- .||.+++|.... +| .|.+||+-|.- .-+.+.++ ++. |.
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K-~dYg~mI~aDkRf~R~dK 687 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGK-TDYGLMIFADKRFSRGDK 687 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhcc-ccceeeEeeehhhccccc
Confidence 9866 999999997422 11 27789999853 44444433 322 22
Q ss_pred --CchHHHHHHHhhccCCCChhH-HHHHHHHHHHHhhhhhh
Q 001262 824 --KYSPDLVKALELSEQVVPDDL-KALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 824 --~~~~~i~~~l~~~~~~vp~~l-~~~~~~~~~~~~~~~~~ 861 (1112)
+.-..|...|......+..++ ..++..|...+++....
T Consensus 688 R~klp~wi~~~l~~~~~nlstd~a~~varrflR~maQp~~k 728 (755)
T KOG1131|consen 688 RSKLPKWIRNHLFDAKLNLSTDMANQVARRFLRLMAQPFDK 728 (755)
T ss_pred hhhhhHHHHhhhhhhccCCCcchhHHHHHHHHHHhcCCCCc
Confidence 222344444444443333322 45667777777766544
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.03 E-value=8.9e-06 Score=85.21 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-------HHHH
Q 001262 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-------HSDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-------~~~~ 560 (1112)
...++.|..++.+++...-+++.|+.|||||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456789999999999888888899999999999999999888762 234667777876532111 0111
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHH
Q 001262 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~ 640 (1112)
.-++.++--....+++.. .+..+.....|-+.++..+ . + ..|+ -++||||||..+. ..++..
T Consensus 77 ~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i----R---G--rt~~-~~~iIvDEaQN~t----~~~~k~ 138 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI----R---G--RTFD-NAFIIVDEAQNLT----PEELKM 138 (205)
T ss_dssp -TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG----T---T----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh----c---C--cccc-ceEEEEecccCCC----HHHHHH
Confidence 111111000000000111 1223333456666665533 1 1 2343 3899999999865 567888
Q ss_pred HHHhcCCCCcEEEEecc
Q 001262 641 IVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT 657 (1112)
++..+..+.++|++.-.
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 88888888888876655
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.00 E-value=3.4e-05 Score=84.30 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=106.9
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001262 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 470 ~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il----------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
-.+.|+..++.. ..++..|.+++-... .....++-..||.||.-+..-.|+.++...
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345777766542 346788888876654 223456667899999887666677666542
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCcccc----
Q 001262 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNL---- 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l---- 615 (1112)
..++|+|..+-.|.......+..+... .+.+..+..-. .. .... -...||++|+..|+...........-|
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~-~~~~--~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG-DIIR--LKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC-cCCC--CCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 236899999999999888888877543 33333332210 00 0011 134699999999877653221111111
Q ss_pred -----CCceEEEeccchhhhcCCCc--------hhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 616 -----RRVTYLVMDEADRMFDMGFE--------PQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 -----~~i~~vViDEah~~~~~~f~--------~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
+.=.+|||||||.+.+..-. ..+..+-..+ |+..+|.+|||.-....
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 12258999999998765321 2333344445 45569999999754433
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.91 E-value=0.00053 Score=85.01 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..+.+.|..|+..++.. ..+||.||+|+|||.+....+...+ . .|+++||++||...+.++...+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999877 5677889999999976544443333 2 256899999999998888776655
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.88 E-value=4e-05 Score=80.91 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 489 KPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
++++-|..++..++... -+++.|+.|+|||.+ +..+...+.. .+..+++++||...+..+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~------- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK------- 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh-------
Confidence 36789999999997554 466679999999975 4445555544 257899999998888765443
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCc----cccCCceEEEeccchhhhcCCCchhHHHHH
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI----TNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~----~~l~~i~~vViDEah~~~~~~f~~~i~~il 642 (1112)
.++.+. |-..+ +....... ..+...++||||||-.+. ...+..++
T Consensus 66 ~~~~a~------------------------Ti~~~---l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 66 TGIEAQ------------------------TIHSF---LYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp HTS-EE------------------------EHHHH---TTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred hCcchh------------------------hHHHH---HhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 122222 21111 11111000 114566899999999754 45667777
Q ss_pred HhcCC-CCcEEEEeccc
Q 001262 643 QNIRP-DRQTVLFSATF 658 (1112)
Q Consensus 643 ~~~~~-~~q~il~SAT~ 658 (1112)
..+.. ..++|++.-+.
T Consensus 115 ~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHS-T-T-EEEEEE-TT
T ss_pred HHHHhcCCEEEEECCcc
Confidence 77766 66777776663
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.88 E-value=0.00022 Score=83.27 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=64.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 481 ~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+...++.++..-|..|+..++...-.||+||.|+|||++.. .++.|+..+ ....+||++|+...+.|+...|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 445577888899999999999999999999999999998644 444455443 2445799999999999888877
Q ss_pred HHHhhhcCceEEEE
Q 001262 561 RKFAKVMGVRCVPV 574 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~ 574 (1112)
.+ .|++++-+
T Consensus 475 h~----tgLKVvRl 484 (935)
T KOG1802|consen 475 HK----TGLKVVRL 484 (935)
T ss_pred Hh----cCceEeee
Confidence 66 45666644
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.85 E-value=0.00018 Score=76.13 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=96.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001262 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~---g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.....|..++=.+. .+ .-.++.|.+.+..+++ |.+.+.+.-||.|||.+ ++||+..++.+ ....+.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SN-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH-cC-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEE
Confidence 4666655665553322 22 3578999999999885 57899999999999976 77888777653 235677
Q ss_pred EEccchhHHHHHHHHHHHHhhh-cCceEEEEe--CCCCh-H---HHH----HHHhcCCeEEEeCchHHHHHHHhcC----
Q 001262 545 IMAPTRELVQQIHSDIRKFAKV-MGVRCVPVY--GGSGV-A---QQI----SELKRGTEIVVCTPGRMIDILCTSG---- 609 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~-~~i~~~~~~--gg~~~-~---~~~----~~l~~g~~IiV~Tp~~L~~~l~~~~---- 609 (1112)
++|| ..|..|.+..+...+.. ++-.+..+- -.... . ..+ ........|+++||+.++.+....-
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 8888 57999998888765443 343333322 12211 1 112 2223345799999998865543221
Q ss_pred -CCc----------cccCCceEEEeccchhhhc
Q 001262 610 -GKI----------TNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 610 -~~~----------~~l~~i~~vViDEah~~~~ 631 (1112)
+.. ..|+..+.=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 010 0123445578999998765
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.85 E-value=0.00022 Score=76.77 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=83.3
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH----------
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ---------- 554 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~---------- 554 (1112)
.++...+..|..++.++..+.-+++.|++|+|||+.++..++..+... .-.+++|.=|+.....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567889999999999988888889999999998887777665442 1223444446544221
Q ss_pred -HHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh--cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001262 555 -QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK--RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 555 -Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~--~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
-+.-.+..+...+.. +.|. ..+..+. ....|.|.... ++.. ..|. -++||||||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRG-----rtl~-~~~vIvDEaqn~~- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRG-----RTFE-NAVVILDEAQNVT- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcC-----Cccc-CCEEEEechhcCC-
Confidence 111112222111111 1111 1122221 12245555433 2221 2333 3799999999864
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEec
Q 001262 632 MGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SA 656 (1112)
..++..++..+..+.++|++.-
T Consensus 190 ---~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 ---AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred ---HHHHHHHHhhcCCCCEEEEeCC
Confidence 3678888888888777776544
No 187
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.83 E-value=4.7e-05 Score=78.17 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecC--cccccCCCCC--CcEEE
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VAARGLDVKE--LELVI 787 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~--v~~~GlDi~~--v~~VI 787 (1112)
+|.+|||++|...++.+...|..... ...++.. .......+++.|+.+...||+|+. .+..|||+++ +.+||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 58999999999999999999976531 1222332 245778999999999999999998 9999999997 88899
Q ss_pred EeCCCCC----H--------------------------HHHHHHHccccCCCCccEEEEEecC
Q 001262 788 NFDAPNH----Y--------------------------EDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 788 ~~~~p~s----~--------------------------~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
...+|.. + ....|.+||+-|....-.+++|+++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888852 1 1114889999998765444555543
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.62 E-value=0.00037 Score=85.21 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001262 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
...|+.|+..++.++-+||.|+.|+|||++. ..++..+..... ....+.+++++||--.|..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999753 333333332211 0113578999999988887777665533222210
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---CccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001262 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
. .+.....+-..|-.+|+........ ...+...+++||||||=.+- ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444332211000 01123457899999998542 4567788889999
Q ss_pred CCcEEEEecc
Q 001262 648 DRQTVLFSAT 657 (1112)
Q Consensus 648 ~~q~il~SAT 657 (1112)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 9998888766
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.54 E-value=0.00025 Score=82.13 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=65.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+||.|..|||||++++-.+. .+.. ...+..++++|+...|...++..+..... .
T Consensus 4 ~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~---------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------P---------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc----------c----------
Confidence 67789999999987554443 3311 12467789999999998877776655320 0
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-------CchhHHHHHHh
Q 001262 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-------FEPQITRIVQN 644 (1112)
Q Consensus 587 l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-------f~~~i~~il~~ 644 (1112)
......+..+..++..+. ........+++|||||||+|...+ ...++..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223344444443332 011345678999999999998732 23455555554
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.51 E-value=0.00053 Score=84.02 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
..+.|+.|+-..+.++-+||.|+.|+|||++. .-++..+.... ......+++++||.-.|..+.+.+......+++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999999999999999999999999753 22333332211 112356888999999998887776654433321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
. . .+......-..|-.+|+....... ....+.-.+++||||||-.+ + ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 1 0 000001112233333322211000 00112335689999999854 2 567778889999
Q ss_pred CCCcEEEEecc
Q 001262 647 PDRQTVLFSAT 657 (1112)
Q Consensus 647 ~~~q~il~SAT 657 (1112)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99998888766
No 191
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0022 Score=74.32 Aligned_cols=171 Identities=14% Similarity=0.107 Sum_probs=90.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+..++++|+||+|||++..-.+....... ...+..+++++ +.|.-+.. .+..++..+++.+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~~------ 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAIE------ 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEeeC------
Confidence 35688899999999987654443332211 01234444444 44444442 25566666666543221
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-CchhHHHHHHhcCCC-CcEEEEecccc
Q 001262 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPD-RQTVLFSATFP 659 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~~-~q~il~SAT~~ 659 (1112)
++..+...+. .+.++++||||++.++.... ....+..++..+.+. .-++++|||..
T Consensus 241 ---------------~~~~l~~~L~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 241 ---------------SFKDLKEEIT-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ---------------cHHHHHHHHH-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 3333433332 24568999999999875211 223455556655544 45688999986
Q ss_pred H-HHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH
Q 001262 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. .+...+..|...++. .-.+...++..+.-.++.++... +-++..++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~yit~Gq 349 (388)
T PRK12723 299 TSDVKEIFHQFSPFSYK-------------TVIFTKLDETTCVGNLISLIYEM--RKEVSYVTDGQ 349 (388)
T ss_pred HHHHHHHHHHhcCCCCC-------------EEEEEeccCCCcchHHHHHHHHH--CCCEEEEeCCC
Confidence 4 344444444321110 01133345556666666666553 23444444444
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.42 E-value=0.00061 Score=82.72 Aligned_cols=141 Identities=20% Similarity=0.316 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCC-------------------CCC-CC------
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP-------------------PVA-AG------ 538 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~-------------------~~~-~~------ 538 (1112)
+|+|.|...+.-++ ...+.++-+|||+|||++.|-..|.....+. +.. .+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 57889987766554 5688999999999999987766654433221 000 00
Q ss_pred --------CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEE------EEe-----------------------------
Q 001262 539 --------DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV------PVY----------------------------- 575 (1112)
Q Consensus 539 --------~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~------~~~----------------------------- 575 (1112)
..|++.+-.-|..-..|+.+++.+..-.....+. |+.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~ 180 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYK 180 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccc
Confidence 1356666667776677777777765322111110 000
Q ss_pred ------------CCCChHHHH---------------HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh
Q 001262 576 ------------GGSGVAQQI---------------SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 576 ------------gg~~~~~~~---------------~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
++.-.-+++ ..|...++||+|-+..|+|-.-+...+ .+|. -++|||||||.
T Consensus 181 ~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~-v~Lk-nsIVIfDEAHN 258 (945)
T KOG1132|consen 181 IVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHK-VDLK-NSIVIFDEAHN 258 (945)
T ss_pred cccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccc-cccc-ccEEEEecccc
Confidence 000000111 223334799999999998877665422 3554 36899999999
Q ss_pred hhc
Q 001262 629 MFD 631 (1112)
Q Consensus 629 ~~~ 631 (1112)
|-+
T Consensus 259 iEd 261 (945)
T KOG1132|consen 259 IED 261 (945)
T ss_pred HHH
Confidence 854
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.00099 Score=83.91 Aligned_cols=129 Identities=17% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001262 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++.|..|+..+..++-+++.|..|+|||++. ..++..+... +....+++++||-..|..+.+. .
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------c
Confidence 4789999999999999999999999999999743 3444443321 1114678889998877644322 2
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhc--CCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc
Q 001262 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS--GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~--~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~ 645 (1112)
|+.. .|-.+|+...... .....+....++||||||+.+. ...+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2211 1111111100000 0000122357899999999753 34567778888
Q ss_pred CCCCcEEEEecc
Q 001262 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
+...++|++.-+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888888887766
No 194
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.00033 Score=81.87 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHcCCCE-EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 489 KPMPIQAQALPVIMSGRDC-IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dv-ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.+.+-|..|+.+.++.+++ ++.||.|+|||.+....+.+.+.. +.++||++||.+.+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHH
Confidence 5678899999999998764 556999999999877777766654 57899999999988877664
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0013 Score=76.42 Aligned_cols=143 Identities=19% Similarity=0.193 Sum_probs=72.4
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChH---
Q 001262 509 GVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVA--- 581 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~--- 581 (1112)
..+.||||||+++...+|..... |.. ..|+.|..-..... ....|.... -+.-.+.++|..+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gyr-~flffvnq~nilek---t~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GYR-NFLFFVNQANILEK---TKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------chh-hEEEEecchhHHHH---HHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 45789999999876666655433 222 34555554443332 222222111 11111223332211
Q ss_pred -HHHHHHhcCCeEEEeCchHHHHHHHhcCCCc---cccCCce-EEEeccchhhhcCC------------CchhHHHHHHh
Q 001262 582 -QQISELKRGTEIVVCTPGRMIDILCTSGGKI---TNLRRVT-YLVMDEADRMFDMG------------FEPQITRIVQN 644 (1112)
Q Consensus 582 -~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~---~~l~~i~-~vViDEah~~~~~~------------f~~~i~~il~~ 644 (1112)
..+.....+..|+++|.+.|...+....... .+|.+.. +++-||||++-... -+..+..+--.
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 1112233467899999998876665433222 2344444 45679999974211 11111111122
Q ss_pred cCCCCcEEEEeccccHH
Q 001262 645 IRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~ 661 (1112)
-+++.-++.||||+|..
T Consensus 152 ~nkd~~~lef~at~~k~ 168 (812)
T COG3421 152 QNKDNLLLEFSATIPKE 168 (812)
T ss_pred cCCCceeehhhhcCCcc
Confidence 34556678899999843
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0024 Score=73.35 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=87.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|..++++||||+|||+.....+...+... + ..++.+++ +...-.--.+.+..|+..+++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G-~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~-------- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----G-ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAV-------- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----C-CCeEEEEe-cccccccHHHHHHHHHHHcCCceEec--------
Confidence 466788999999999987665555443321 1 12333333 22221111245556666666544333
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-CchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+++.+...+. .+.+.++|+||.+-+..... ....+..+.....+...++++|||....
T Consensus 201 -------------~~~~~l~~~l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 201 -------------KDGGDLQLALA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred -------------CCcccHHHHHH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 33333333332 34456888889887542111 1222222222223344578899998554
Q ss_pred H-HHHHHHhcCC---CeEEEecCccccccCce-EEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 662 V-EILARKVLNK---PVEIQVGGRSVVNKDIT-QLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 ~-~~l~~~~l~~---p~~i~~~~~~~~~~~i~-q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
. ...+..|... |.... ..+. -++...++..++-.++.++... +-++..+++.+.
T Consensus 261 ~l~evi~~f~~~~~~p~~~~--------~~~~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 319 (374)
T PRK14722 261 TLNEVVQAYRSAAGQPKAAL--------PDLAGCILTKLDEASNLGGVLDTVIRY--KLPVHYVSTGQK 319 (374)
T ss_pred HHHHHHHHHHHhhccccccc--------CCCCEEEEeccccCCCccHHHHHHHHH--CcCeEEEecCCC
Confidence 3 4444444322 11000 0011 1233455566666777776653 335555555443
No 197
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.25 E-value=0.0028 Score=66.73 Aligned_cols=171 Identities=19% Similarity=0.181 Sum_probs=94.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++||||+|||++..-.+...... +.++.+++ ..|.=|. +.++.++..+++.+.............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchhhHHHH
Confidence 6788999999998755544444332 33455555 3444443 567778888888766544333222211
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
...+.. ...+++++|+||=+-+.. +......+..++..+.+..-++++|||......
T Consensus 73 -----------------~~~l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 73 -----------------REALEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -----------------HHHHHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -----------------HHHHHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 112211 122346788888776543 222345677777788777778999999876544
Q ss_pred HHHHHhcC-CCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 664 ILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 664 ~l~~~~l~-~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
..+..+.. -++. .-.+...++..++-.++.++... +-++-.+++.+.
T Consensus 131 ~~~~~~~~~~~~~-------------~lIlTKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 131 EQALAFYEAFGID-------------GLILTKLDETARLGALLSLAYES--GLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHSSTC-------------EEEEESTTSSSTTHHHHHHHHHH--TSEEEEEESSSS
T ss_pred HHHHHHhhcccCc-------------eEEEEeecCCCCcccceeHHHHh--CCCeEEEECCCC
Confidence 33433332 1110 01133455666677777777653 335555555443
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0087 Score=68.38 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
.+.++++|+||+|||+.....+... .. .|..++++. |.|.-+. ..+..++..+++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L-~~-------~GkkVglI~aDt~RiaAv---EQLk~yae~lgipv~--------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTV---QQLQDYVKTIGFEVI--------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCcEEEEecCCcchHHH---HHHHHHhhhcCCcEE---------
Confidence 3567889999999998655544433 22 244454444 3442222 233344444444332
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC-CCchhHHHHHHhcCCCCcEEEEecccc-
Q 001262 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP- 659 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-~f~~~i~~il~~~~~~~q~il~SAT~~- 659 (1112)
++.+|..|.+.+... ....++++|+||-+=+.... .....+..++....++.-++++|||..
T Consensus 301 ------------v~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ------------ecCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 233566665555321 11124788899988765421 123345555555556655677999765
Q ss_pred HHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH
Q 001262 660 RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
..+..++..|-..++.- -++.-.+...+.-.++.++... +-++..++..+
T Consensus 365 ~d~~~i~~~F~~~~idg-------------lI~TKLDET~k~G~iLni~~~~--~lPIsyit~GQ 414 (436)
T PRK11889 365 KDMIEIITNFKDIHIDG-------------IVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 414 (436)
T ss_pred HHHHHHHHHhcCCCCCE-------------EEEEcccCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 45566666654322110 1123344555666666666553 33555554443
No 199
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.01 Score=70.05 Aligned_cols=170 Identities=20% Similarity=0.221 Sum_probs=86.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHH-hcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l-~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.++.++++||||+|||++.+..+.... .. .+..+++|. |.|.-+. ..+..++..+++.+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------ 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------ 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------
Confidence 356788899999999986655444332 22 133444443 3333222 3445555545544322
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHH-hcCCCCcEEEEecc
Q 001262 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQ-NIRPDRQTVLFSAT 657 (1112)
Q Consensus 580 ~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~-~~~~~~q~il~SAT 657 (1112)
+.++..|...+. .+..+++||||-+-+.. +......+..++. ...+....+++|||
T Consensus 284 ---------------~~~~~~l~~~l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 284 ---------------VYDPKELAKALE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ---------------cCCHHhHHHHHH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 233444444442 23457899999886532 1112234555555 22344557889998
Q ss_pred ccH-HHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 658 FPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 658 ~~~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
... .+..++..|-..++. .-++...++...+-.++.++... +-++..++..+.
T Consensus 342 ~~~~~l~~~~~~f~~~~~~-------------~vI~TKlDet~~~G~i~~~~~~~--~lPv~yit~Gq~ 395 (424)
T PRK05703 342 TKYEDLKDIYKHFSRLPLD-------------GLIFTKLDETSSLGSILSLLIES--GLPISYLTNGQR 395 (424)
T ss_pred CCHHHHHHHHHHhCCCCCC-------------EEEEecccccccccHHHHHHHHH--CCCEEEEeCCCC
Confidence 764 445555555332210 01122334444455556655542 235555555543
No 200
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.12 E-value=0.0079 Score=68.60 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.++-+.++||||.|||++..=.+....+. .+....+||-+-|--.+. ++.++.++.-+++.+..++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~------- 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY------- 267 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec-------
Confidence 47889999999999998755444444411 122344566665433322 3667778887887665544
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+|.-|...+ ..|.++++|.||=+-+-. |.....++..++....+..-.+++|||....
T Consensus 268 --------------~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 268 --------------SPKELAEAI-------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred --------------CHHHHHHHH-------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 444444443 234556666666665422 1123445555555554555578899997643
Q ss_pred -HHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+......|-.-|+.-. ++.-.++...+-.++.++... +-++..|.+.+.
T Consensus 327 dlkei~~~f~~~~i~~~-------------I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~ 376 (407)
T COG1419 327 DLKEIIKQFSLFPIDGL-------------IFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQR 376 (407)
T ss_pred HHHHHHHHhccCCccee-------------EEEcccccCchhHHHHHHHHh--CCCeEEEeCCCC
Confidence 4555555554443111 122334445555566666542 335555555554
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.12 E-value=0.0025 Score=78.27 Aligned_cols=146 Identities=21% Similarity=0.248 Sum_probs=89.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001262 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
|+.+..-....+.+.+... -+..+...|++|+-.++..+| .||.|=.|+|||++... ++..+.. .|.
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCC
Confidence 4344444455566666663 223466899999999988776 66679999999975443 3333322 367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH-----------------HHHHhcCCeEEEeCchHHHHH
Q 001262 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ-----------------ISELKRGTEIVVCTPGRMIDI 604 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~-----------------~~~l~~g~~IiV~Tp~~L~~~ 604 (1112)
++|+.+=|...+..+.-.+.. +++.+.-+-.+.....+ +..+...+.||.||=-.+.+.
T Consensus 715 kVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhc----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 888888887666544333333 34443333222222222 233344578888885444433
Q ss_pred HHhcCCCccccCCceEEEeccchhhhc
Q 001262 605 LCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 605 l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
| +....++|+|||||-.|+.
T Consensus 791 l-------f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 791 L-------FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred h-------hhccccCEEEEcccccccc
Confidence 3 4567799999999998753
No 202
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.07 E-value=5.2e-05 Score=91.72 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh---cCCccEEEecCcc
Q 001262 699 DRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK---SNVCNLLIATSVA 774 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~ 774 (1112)
.|+..|+..+...... .+||||...+...+.|..++...+ ....|.|......|..++..|. ...+.+|++|...
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 3555566666665544 499999999999999999998888 8889999999999999999998 3356789999887
Q ss_pred ccc
Q 001262 775 ARG 777 (1112)
Q Consensus 775 ~~G 777 (1112)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 655
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=97.05 E-value=0.0053 Score=69.82 Aligned_cols=132 Identities=23% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hh-HHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-re-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
.-++++|++|+|||++....+ ..+.. .|..++++. .| |. ...|+ ..++..+++.+.....|....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 347778999999998544333 23332 234455554 22 23 33343 445555666554333232221
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.. +.+.+.. .....+++||||.+.++. +..+...+..+...+.++.-+++++||...
T Consensus 209 ~v-----------------~~~ai~~-----~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 AV-----------------AYDAIEH-----AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HH-----------------HHHHHHH-----HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 11 1112211 112346799999999875 334566777777778888888999999876
Q ss_pred HHHHHHHHhc
Q 001262 661 QVEILARKVL 670 (1112)
Q Consensus 661 ~~~~l~~~~l 670 (1112)
.....+..|.
T Consensus 267 d~~~~a~~f~ 276 (336)
T PRK14974 267 DAVEQAREFN 276 (336)
T ss_pred hHHHHHHHHH
Confidence 6655555554
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.03 E-value=0.0035 Score=80.41 Aligned_cols=124 Identities=20% Similarity=0.132 Sum_probs=77.3
Q ss_pred CCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 488 EKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+||..++.+.+ ++++|..|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 3689999999999998765 66779999999985 4444444332 36789999999766654321 1
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~- 645 (1112)
.|+.. .|-.+|+.-... ....+...++||||||-.+. ...+..++...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~---~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~ 458 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQ---GRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAA 458 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcc---cccccccCcEEEEECcccCC----HHHHHHHHHhhh
Confidence 22211 111122111101 11245667899999999653 33455666543
Q ss_pred CCCCcEEEEecc
Q 001262 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.-+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 556788888766
No 205
>PF13245 AAA_19: Part of AAA domain
Probab=97.03 E-value=0.0023 Score=56.13 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=37.9
Q ss_pred cCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 503 SGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 503 ~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+.. ++|.|+.|||||...+-.+...+.... .. +..+||++||+.++..+.+.+
T Consensus 8 ~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 8 AGSPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3444 555899999999766655555543211 12 668999999999999877766
No 206
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.0039 Score=68.40 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001262 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 499 ~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.++-.+.+++++||+|+|||..+...+...
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 455577899999999999998655444433
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.98 E-value=0.0034 Score=61.34 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++-+++.|++|+|||.+.-..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568899999999998644433
No 208
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.0017 Score=68.12 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc---hhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT---RELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt---reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
|.-.|+.|++|+|||+.++-.+.+... .+.+++|+-|. +.... .++..+|+.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~~------- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSREA------- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--------cCCeEEEEeccccccccCC-------cEecCCCCcccc-------
Confidence 344678899999999876655554422 25678888663 22211 112222221110
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 581 ~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+..+..++..+.. .-..+.+|||||+|.+. ..++..++..+.+.-..|++++-
T Consensus 60 ------------~~~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 ------------IPVSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ------------eEeCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344444444432 12357899999998642 23466666665444445555544
No 209
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.92 E-value=0.081 Score=68.68 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=78.0
Q ss_pred CCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 488 EKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+|+..+.. ++-++++|.-|+|||++ +-++...+.. .|..++.++||--.|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e-------~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEK-------E 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH-------h
Confidence 4689999999998865 45677789999999975 3344444332 36788999999776654422 2
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
.|+....+ .+|+ +....+ ...|...++||||||-.+. ...+..++....
T Consensus 445 ~Gi~a~TI------------------------as~l--l~~~~~-~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~ 493 (1102)
T PRK13826 445 AGIQSRTL------------------------SSWE--LRWNQG-RDQLDNKTVFVLDEAGMVA----SRQMALFVEAVT 493 (1102)
T ss_pred hCCCeeeH------------------------HHHH--hhhccC-ccCCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 34332221 1111 000011 1245667899999999543 345566666664
Q ss_pred -CCCcEEEEecc
Q 001262 647 -PDRQTVLFSAT 657 (1112)
Q Consensus 647 -~~~q~il~SAT 657 (1112)
...++||+.-+
T Consensus 494 ~~garvVLVGD~ 505 (1102)
T PRK13826 494 RAGAKLVLVGDP 505 (1102)
T ss_pred hcCCEEEEECCH
Confidence 56788888766
No 210
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.013 Score=64.82 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001262 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
++-.+.+++++||+|+|||..+...+. .+.. .|..++++ +..+|+.++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~-------~g~~v~f~-~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE-------NGWRVLFT-RTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHH-HHHH-------cCCceeee-eHHHHHHHHHHHHhC-----------------
Confidence 455788999999999999965443333 2222 14444444 445565544221000
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCC-chhHHHHHHhcCCCCcEEEEeccc
Q 001262 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f-~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+...++. .+..+++|||||.+.+....+ ...+..|+........+|+.|-..
T Consensus 156 ----------------~~~~~~l~----------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 156 ----------------LQLESAIA----------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----------------CcHHHHHH----------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 01111111 234578999999997543222 234556666554445666666665
Q ss_pred cHH
Q 001262 659 PRQ 661 (1112)
Q Consensus 659 ~~~ 661 (1112)
+..
T Consensus 210 ~~~ 212 (269)
T PRK08181 210 FGE 212 (269)
T ss_pred HHH
Confidence 554
No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.86 E-value=0.011 Score=75.08 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|..|+..++.+ +-++|+|+.|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 35889999999999875 5678889999999975 3334433332 26778999999776654432 2
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh-c
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN-I 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~-~ 645 (1112)
.|+... |-.+++..+.. ....+...++||||||-.+.. ..+..++.. .
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~---~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWAN---GRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAE 464 (744)
T ss_pred cCCcee------------------------eHHHHHhhhcc---CcccCCCCcEEEEECcccCCH----HHHHHHHHHHH
Confidence 233221 11111110111 112356789999999996542 234455553 3
Q ss_pred CCCCcEEEEecc
Q 001262 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.=+
T Consensus 465 ~~~~kliLVGD~ 476 (744)
T TIGR02768 465 EAGAKVVLVGDP 476 (744)
T ss_pred hcCCEEEEECCh
Confidence 356677777644
No 212
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.07 Score=63.54 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=81.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
.|..++++|+||+|||+.+...+...... +.+..+.++. +.+..+. ..+..+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 46678888999999998665444333222 1122344433 3343332 2333443334443221
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC-CCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 581 ~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+.++..|...+. .+.++++||||.+-++... .....+..+ .......-+|+++++..
T Consensus 413 --------------a~d~~~L~~aL~-------~l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss 470 (559)
T PRK12727 413 --------------ADSAESLLDLLE-------RLRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAH 470 (559)
T ss_pred --------------cCcHHHHHHHHH-------HhccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCC
Confidence 123334444442 2345789999998764211 111122222 22234455778888865
Q ss_pred H-HHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH
Q 001262 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. .+..++..|....+. .-++...++..++-.++.++... +-++..+++++
T Consensus 471 ~~Dl~eii~~f~~~~~~-------------gvILTKlDEt~~lG~aLsv~~~~--~LPI~yvt~GQ 521 (559)
T PRK12727 471 FSDLDEVVRRFAHAKPQ-------------GVVLTKLDETGRFGSALSVVVDH--QMPITWVTDGQ 521 (559)
T ss_pred hhHHHHHHHHHHhhCCe-------------EEEEecCcCccchhHHHHHHHHh--CCCEEEEeCCC
Confidence 3 444455444321110 01122344555666666666543 23455555444
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.74 E-value=0.017 Score=64.17 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=92.5
Q ss_pred HCCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-----
Q 001262 484 KLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI----- 556 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~----- 556 (1112)
-+|+......|.-|+.+++.-. -|.+.|+-|||||+.++.+.+..++.++. -.+++|.=|+..+-..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCC
Confidence 3677777788999999998664 46667999999999999998888776532 23445544665443211
Q ss_pred ------HHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccC-------CceEEEe
Q 001262 557 ------HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR-------RVTYLVM 623 (1112)
Q Consensus 557 ------~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~-------~i~~vVi 623 (1112)
.-+++.++.. +..|... -=|+.+.|..++......+..|. .=.||||
T Consensus 298 ~eEeKm~PWmq~i~Dn-----------------LE~L~~~---~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 298 TEEEKMGPWMQAIFDN-----------------LEVLFSP---NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred chhhhccchHHHHHhH-----------------HHHHhcc---cccchHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 1112221111 1111110 00112222222222111111111 1258999
Q ss_pred ccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc----------cHHHHHHHHHhcCCCeE
Q 001262 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF----------PRQVEILARKVLNKPVE 675 (1112)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~----------~~~~~~l~~~~l~~p~~ 675 (1112)
|||+.+. ..++..|+.....+..+|++.--- .+.+..++.+|.+.|..
T Consensus 358 DEaQNLT----pheikTiltR~G~GsKIVl~gd~aQiD~~yl~~~snGLtyvverfk~~~l~ 415 (436)
T COG1875 358 DEAQNLT----PHELKTILTRAGEGSKIVLTGDPAQIDTPYLDETSNGLTYVVEKFKGHPLS 415 (436)
T ss_pred ehhhccC----HHHHHHHHHhccCCCEEEEcCCHHHcCCccccCCCccHHHHHHHhcCCCce
Confidence 9999864 567889999998888887765431 23345555666665543
No 214
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=96.60 E-value=0.0049 Score=58.96 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=53.0
Q ss_pred cchhhcccchhhhhHHhhhCCeEecccee--eCCCCC-----CC--CCCCceEEEEEeCC--HHHHHHHHHHHHHHHHHH
Q 001262 1025 NARWKVTHKETLGPISEWTGAAITTRGQY--FPPSRI-----AG--PGERKLYLFIEGPT--EQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~t~~~~~~~i~~~tg~~i~~kG~y--~~~~~~-----~~--~~~~~Lyl~ie~~~--~~~v~~a~~~i~~~~~e~ 1093 (1112)
.-+-.=..+.|+.+|++.|||.|.++|.- ...++. |. ..+-+||++|+|++ ..++++|+..|+.|+...
T Consensus 17 IG~IIGPgG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~~~ 96 (120)
T cd02395 17 VGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLKPA 96 (120)
T ss_pred eEEEECCCChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhccC
Confidence 34445578999999999999999999862 111111 11 13568999999999 999999999999999844
No 215
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.038 Score=63.12 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.++.++++||+|+|||+...-.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999865554443
No 216
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.58 E-value=0.0055 Score=69.59 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+.... .....+|+|++|+..|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47889998888 6778999999999999988777776665532 23457999999999999999888887654321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001262 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.. .........+..-..+.|+|-..+...+.........+ .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI-DPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS-HTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhc-cccceeecchh
Confidence 10 00001111222235678888877755443321111111 12355667766
No 217
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.48 E-value=0.095 Score=72.98 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001262 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+++-|.+|+..++.. +-.||.|..|+|||.+ +-.++..+.. .|..+++++||-..+..+.+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 5789999999999875 5677789999999974 3344444332 36789999999877765544322
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-
Q 001262 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~- 645 (1112)
+... .....+..+..+ ....|...|+ . ....|...++||||||-.+. ...+..++...
T Consensus 496 --~~A~------Ti~~~l~~l~~~--~~~~tv~~fl---~----~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 496 --RLAS------TFITWVKNLFND--DQDHTVQGLL---D----KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAE 554 (1960)
T ss_pred --chhh------hHHHHHHhhccc--ccchhHHHhh---c----ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHh
Confidence 1110 111112221111 1122322332 1 11245667899999999653 44666777655
Q ss_pred CCCCcEEEEecc--ccH----HHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEE
Q 001262 646 RPDRQTVLFSAT--FPR----QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKIL 718 (1112)
Q Consensus 646 ~~~~q~il~SAT--~~~----~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vL 718 (1112)
..+.++||+.-+ +|. .+..++... +-|.. .+.........+ .+.......++..+...+..... ...++
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~-~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTY-AWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEE-EeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 467889988776 222 333333332 22221 111111111111 12222233444455554444443 33689
Q ss_pred EEeCCHHHHHHHHHHHHh
Q 001262 719 IFVHSQEKCDALFRDLLK 736 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~ 736 (1112)
||..+..+...|...++.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888777766644
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.45 E-value=0.0081 Score=69.86 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHH------HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 489 KPMPIQAQALPVI------MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 489 ~pt~iQ~~ai~~i------l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
++++-|..++..+ ..+..+++.|+-|+|||.. +-.+..... ..+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc------cccceEEEecchHHHHHhc
Confidence 3567899998888 5778899999999999964 323322222 1367889999998777654
No 219
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.44 E-value=0.021 Score=56.65 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=54.7
Q ss_pred eeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCC--CcEEEEeCCCCC----H-------------------
Q 001262 742 LSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKE--LELVINFDAPNH----Y------------------- 795 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~--v~~VI~~~~p~s----~------------------- 795 (1112)
.++.-+....+...+++.|+... ..||++|.-++.|||+++ +.+||...+|.. +
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34444555556788999998654 379999988999999998 678888887641 0
Q ss_pred --------HHHHHHHccccCCCCccEEEEEec
Q 001262 796 --------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 796 --------~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
....|.+||+-|....-.+++|++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 122488899999765433444544
No 220
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.44 E-value=0.0073 Score=66.14 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=54.6
Q ss_pred HHHHHhhcCCccEEEecCcccccCCCCC--------CcEEEEeCCCCCHHHHHHHHccccCCCCc-cEEEEEec
Q 001262 755 STISDFKSNVCNLLIATSVAARGLDVKE--------LELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFIS 819 (1112)
Q Consensus 755 ~~~~~F~~g~~~VLVaT~v~~~GlDi~~--------v~~VI~~~~p~s~~~y~QriGR~gR~G~~-g~~~~~~~ 819 (1112)
...+.|.+|...|+|.|+.++.||.+.. -.+-|.+.+||+....+|.+||+.|.|+. ...|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 5567899999999999999999998874 34667789999999999999999999974 44555554
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.42 E-value=0.021 Score=56.29 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.|++|+|||.. +..++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999963 44444443
No 222
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.058 Score=63.15 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=85.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+.++|+||+|||+.+...+...+... +....++|.+.+.-.+ ....+..++..+|+.+..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~~---- 258 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDIA---- 258 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCHH----
Confidence 456688889999999987654443333221 1123456666653332 23445566666676554433322
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+...+ ..+....+|+||.+-+... ......+..+.....+...++++|||....
T Consensus 259 -----------------dl~~al-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 259 -----------------DLQLML-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred -----------------HHHHHH-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 221122 1234456666666532110 001122222222223445578899997544
Q ss_pred -HHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHH
Q 001262 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+...+..|-..++. .-++...++..+.-.++.++... +-++..+++.+.
T Consensus 315 ~~~~~~~~f~~~~~~-------------~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 315 TLDEVISAYQGHGIH-------------GCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHHHHHhcCCCCC-------------EEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 55555555432221 01233445566666777776653 335555665554
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.053 Score=61.78 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=28.9
Q ss_pred cCCceEEEeccchhhhcCCC-chhHHHHHHhcCC-CCcEEEEeccccHHH
Q 001262 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f-~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+.+......| ...+..|+..... ...+|+.|-..|..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44678999999986543332 2345555555433 456766666655554
No 224
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.26 E-value=0.008 Score=65.04 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=63.0
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCC-ChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccC
Q 001262 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS-GVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
..|.+||||..---|..+...+..|.. -++.++-++.-. ...+|+..|.. .+.|.||||+||..++..+. ..++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l~ 200 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSLS 200 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCcc
Confidence 478999999986666666666666521 023444444443 66788888875 57999999999999997654 5788
Q ss_pred CceEEEeccchh
Q 001262 617 RVTYLVMDEADR 628 (1112)
Q Consensus 617 ~i~~vViDEah~ 628 (1112)
++.+||||=-|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
No 225
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0075 Score=68.61 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=52.0
Q ss_pred ccchhhhhHHhhhCCeEeccce-eeCCCCC------CCC-CCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001262 1031 THKETLGPISEWTGAAITTRGQ-YFPPSRI------AGP-GERKLYLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~-y~~~~~~------~~~-~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~~ 1094 (1112)
..+.||..+...|||-|.+||+ -+-.|+. ..+ -+-+||.+|.+.|++.|++|++.|+.||.+++
T Consensus 161 PRG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~eki~~Ai~vienli~~av 232 (554)
T KOG0119|consen 161 PRGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEKIKKAIAVIENLIQSAV 232 (554)
T ss_pred CCccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999994 2233331 112 35799999999999999999999999999854
No 226
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.20 E-value=0.097 Score=57.82 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=89.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-h-hHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-R-ELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-r-eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.+..++++|++|+|||+.+.+.+... .. .+..+.++. .+ + ..+.|| ..++..+++.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~~~~----- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVIAV----- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceEEec-----
Confidence 34678888999999998666544432 21 133444443 22 2 344444 34444444433221
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.++..|...+..- .....+++||||-+=++.. ......+..++....++.-++++|||.
T Consensus 137 ----------------~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ----------------RDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------------CCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 2344444433211 1223578999999876532 223344555666666665577899986
Q ss_pred c-HHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH
Q 001262 659 P-RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 659 ~-~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. ..+...+..|-.-++. .-.+...++..+.-.++.++... +-++..++..+
T Consensus 197 ~~~d~~~~~~~f~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq 248 (270)
T PRK06731 197 KSKDMIEIITNFKDIHID-------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 248 (270)
T ss_pred CHHHHHHHHHHhCCCCCC-------------EEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 4 4666676666432210 01133345555666666666553 33555555443
No 227
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.039 Score=68.69 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE-ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl-~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+.-++++||||+|||+++...+..+.... + +.++.++ +-|--.+ ..+.++.++..+++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G-~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~--------- 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-----G-ADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHA--------- 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-----C-CCeEEEecCcccchH--HHHHHHHHHHhCCCCccc---------
Confidence 45677899999999987665544332221 1 1234333 3332111 124455566656654432
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+.+|..+.+.+. .+..+++|+||=+=++.. ......+..+.....+..-++++|||....
T Consensus 248 ------------~~~~~~l~~al~-------~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 248 ------------VKDAADLRFALA-------ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD 308 (767)
T ss_pred ------------cCCHHHHHHHHH-------HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH
Confidence 224444444442 233456667776665431 112223333333444556677788886433
Q ss_pred -HHHHHHHh
Q 001262 662 -VEILARKV 669 (1112)
Q Consensus 662 -~~~l~~~~ 669 (1112)
+..++..|
T Consensus 309 ~l~~i~~~f 317 (767)
T PRK14723 309 TLNEVVHAY 317 (767)
T ss_pred HHHHHHHHH
Confidence 34444444
No 228
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.1 Score=62.17 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=34.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
|.-++++|+||+|||++....+....... +....+||-+-+ |.-+ .+.+..|+..+++.+..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeecc
Confidence 55677889999999987665554333321 111233444433 2222 355666666666655433
No 229
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.12 E-value=0.24 Score=63.30 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|+|-|.+|+.. ....++|+|..|||||.+.+.-+...+.... . ....+|+|+-|+..|..+...+..++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-V---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-C---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3578999998864 3567999999999999987776666654321 1 124689999999999888887776654
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.051 Score=59.14 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=29.6
Q ss_pred cCCceEEEeccchhhhcCCCch-hHHHHHHhcC-CCCcEEEEeccccHHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFEP-QITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~-~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+++......|.. .+..|+.... ....+|+.|---+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3468899999999765444443 3444555432 3466777776655444
No 231
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.12 Score=60.00 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||++....+...... .|..++++. +.|..+.. .+..++..+++.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~------- 285 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPV------- 285 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeeh-------
Confidence 3457788999999998766555443222 234444444 44554442 4555555555533211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcC---CCCcEEEEecc
Q 001262 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR---PDRQTVLFSAT 657 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~---~~~q~il~SAT 657 (1112)
..+..+...+. -..+++||||=+-++. +......+..++..+. +..-++++|||
T Consensus 286 --------------~~~~~l~~~l~--------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 286 --------------KDIKKFKETLA--------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred --------------HHHHHHHHHHH--------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 01122222221 1346788888765542 1222334444444432 23457888999
Q ss_pred ccH-HHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCH
Q 001262 658 FPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 658 ~~~-~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
... .+...+..|-.-++. .-++.-.+...+.-.++.++... +-++..++..+
T Consensus 344 ~~~~~~~~~~~~f~~~~~~-------------glIlTKLDEt~~~G~il~i~~~~--~lPI~ylt~GQ 396 (432)
T PRK12724 344 SSYHHTLTVLKAYESLNYR-------------RILLTKLDEADFLGSFLELADTY--SKSFTYLSVGQ 396 (432)
T ss_pred CCHHHHHHHHHHhcCCCCC-------------EEEEEcccCCCCccHHHHHHHHH--CCCEEEEecCC
Confidence 876 455555555222210 01123344555555666666543 23555555443
No 232
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.10 E-value=0.057 Score=63.77 Aligned_cols=130 Identities=19% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
..++++|++|+|||++..-.+. ++.. .|..+++++ .+ |..+ +..+..++..+++.+..........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~- 163 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV- 163 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-
Confidence 4577889999999986554443 3332 134455444 33 3322 2444555555555432211111110
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.+.+.. +..+++||||.+-++.. ......+..+...+.++.-+++++||....
T Consensus 164 ----------------~i~~~al~~-------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 164 ----------------EIAKEGLEK-------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred ----------------HHHHHHHHH-------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH
Confidence 011222221 22347899999965431 123344556666667777788889988655
Q ss_pred HHHHHHHh
Q 001262 662 VEILARKV 669 (1112)
Q Consensus 662 ~~~l~~~~ 669 (1112)
....+..|
T Consensus 221 av~~a~~F 228 (437)
T PRK00771 221 AKNQAKAF 228 (437)
T ss_pred HHHHHHHH
Confidence 54455443
No 233
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.09 E-value=0.014 Score=73.69 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=91.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC----------CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEE
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----------VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~----------~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
.|+++++...+|+|||..-+...+.++-..-+ ........+|||||. ++..||+.+|.+-+... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 46778999999999998766665544221100 011123467999996 56699999999876644 5544
Q ss_pred EEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhc--CCCccc-------------cCCce--EEEeccchhhhcCCC
Q 001262 573 PVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTS--GGKITN-------------LRRVT--YLVMDEADRMFDMGF 634 (1112)
Q Consensus 573 ~~~gg~~~~~-~~~~l~~g~~IiV~Tp~~L~~~l~~~--~~~~~~-------------l~~i~--~vViDEah~~~~~~f 634 (1112)
+|-|..... ......-.+||||+|+..|..-+... .+.... |-.+. -|+||||..+-. .
T Consensus 451 -~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 451 -LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred -EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 444432211 11111234899999999997666433 111111 11122 289999996543 3
Q ss_pred chhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 635 EPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 635 ~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
......++..+ +....-++|+|+-..+.
T Consensus 528 sS~~a~M~~rL-~~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRL-HAINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHh-hhhceeeecCCchhhhh
Confidence 34444444444 33457788999654443
No 234
>PRK06921 hypothetical protein; Provisional
Probab=96.07 E-value=0.075 Score=58.88 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=26.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
.+..+++.|++|+|||..+. .+...+..+ .|..++++ +..+|..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEE-EHHHHHHH
Confidence 35779999999999996433 344444331 14455555 44444443
No 235
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.98 E-value=0.035 Score=55.23 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCC---CeeeecCCCCHHHHHHHHHHhhcCCc---cEEEecCc--ccccCCCCC--CcEEEEeCCCCC--
Q 001262 727 CDALFRDLLKHGY---PCLSLHGAKDQTDRESTISDFKSNVC---NLLIATSV--AARGLDVKE--LELVINFDAPNH-- 794 (1112)
Q Consensus 727 ~~~l~~~L~~~~~---~~~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v--~~~GlDi~~--v~~VI~~~~p~s-- 794 (1112)
.+.++..+...++ ...++.-+....+...++..|+.... .||+|+.- ++.|||+++ +..||...+|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223323333344788888886543 68888866 999999998 678998888741
Q ss_pred --H---------------------------HHHHHHHccccCCCCccEEEEEec
Q 001262 795 --Y---------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 795 --~---------------------------~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
+ ....|.+||+-|....--+++|+.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 112488899999865433455554
No 236
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.97 E-value=0.23 Score=59.53 Aligned_cols=122 Identities=12% Similarity=0.179 Sum_probs=80.4
Q ss_pred ccchhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHHHHHHHHHHhh----c
Q 001262 696 PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQTDRESTISDFK----S 762 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~-------~~~~ihg~~~~~~R~~~~~~F~----~ 762 (1112)
....-+..|...+..+. -+|.|++|+++.+....+.+.+...|+ +-+++-...+ -..++..|. .
T Consensus 609 ~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~ 685 (821)
T KOG1133|consen 609 ESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAER 685 (821)
T ss_pred CChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhc
Confidence 33344444444444332 148899999999999999999887653 2223332222 345666665 4
Q ss_pred CCccEEEec--CcccccCCCCC--CcEEEEeCCCCC--------------------------------HHHHHHHHcccc
Q 001262 763 NVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH--------------------------------YEDYVHRVGRTG 806 (1112)
Q Consensus 763 g~~~VLVaT--~v~~~GlDi~~--v~~VI~~~~p~s--------------------------------~~~y~QriGR~g 806 (1112)
|...||+|. .-++.|||+.+ ...||..++|.. +-...|-||||-
T Consensus 686 g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAI 765 (821)
T KOG1133|consen 686 GRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAI 765 (821)
T ss_pred CCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 555677766 77889999987 788888888652 112359999999
Q ss_pred CCCCccEEEEEecC
Q 001262 807 RAGRKGCAITFISE 820 (1112)
Q Consensus 807 R~G~~g~~~~~~~~ 820 (1112)
|.-+.--+|+|++.
T Consensus 766 RH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 766 RHRKDYASIYLLDK 779 (821)
T ss_pred hhhccceeEEEehh
Confidence 98766666666654
No 237
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.89 E-value=0.028 Score=66.43 Aligned_cols=135 Identities=16% Similarity=0.249 Sum_probs=81.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
-.++.|..|||||.+.++-++..+... ..+..+||+-||.. |..-++..+...+..+|+....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 357789999999999888888777764 12467788888877 66777778877777666542221111110 11
Q ss_pred HHHhc-CCeEEEeCc-hHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC--CCcEEEEeccccH
Q 001262 585 SELKR-GTEIVVCTP-GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPR 660 (1112)
Q Consensus 585 ~~l~~-g~~IiV~Tp-~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~--~~q~il~SAT~~~ 660 (1112)
. +.. |..|++..- .... ++.....+.+++||||..+... .+..++..++. ....|++|.|++.
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred E-ecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1 112 455665443 2111 1123344789999999987432 44444444442 2224888888765
No 238
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89 E-value=0.012 Score=63.89 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=40.7
Q ss_pred CCCCCcccccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001262 460 KDVPKPIKTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~l~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+|..|.+|.++++|+-+.+.+.. .| =+||.||||||||++ +..|+.++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3468889999999999988774432 22 267779999999975 77788887764
No 239
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.88 E-value=0.016 Score=69.99 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 492 PIQAQALPVIMS-----G----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~-----g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|+|...+-.|+. | +.+++.-+=|.|||......++.++.-. ...++.++++++++.-|..++..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777762 2 3477788999999986666556555432 23478899999999999999999988
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHH
Q 001262 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il 642 (1112)
+.......... .. ..+.... ...|.+...+.++..+........- .+..++|+||+|.+-+......+..-+
T Consensus 77 ~i~~~~~l~~~-~~-----~~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG-~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKR-KK-----PKIIKSN-KKEIEFPKTGSFFKALSSDADSLDG-LNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccc-hh-----hhhhhhh-ceEEEEcCCCcEEEEEecCCCCccC-CCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 87653211100 00 0000000 1233333323333333332222222 256899999999876543333333333
Q ss_pred HhcCCCCcEEEE
Q 001262 643 QNIRPDRQTVLF 654 (1112)
Q Consensus 643 ~~~~~~~q~il~ 654 (1112)
.. +++.+++++
T Consensus 149 ~~-r~~pl~~~I 159 (477)
T PF03354_consen 149 GA-RPNPLIIII 159 (477)
T ss_pred cc-CCCceEEEE
Confidence 33 345555554
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.88 E-value=0.015 Score=56.70 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++||+|+|||+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4578999999999998544
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.87 E-value=0.083 Score=53.26 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++++|++|+|||+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 67899999999985544433
No 242
>PRK08116 hypothetical protein; Validated
Probab=95.82 E-value=0.16 Score=56.31 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=29.1
Q ss_pred cCCceEEEeccchh--hhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001262 615 LRRVTYLVMDEADR--MFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~--~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+++||||+++. ..++ ....+..|+... ....++|+.|-..|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 34578999999963 2222 233455566554 345667877777666543
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=95.72 E-value=0.088 Score=58.11 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHH
Q 001262 500 VIMSGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++-.+..++++||+|+|||..+...+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 35578899999999999997555443
No 244
>PHA02533 17 large terminase protein; Provisional
Probab=95.68 E-value=0.061 Score=65.33 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=85.9
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|.|+|...+..+..++-.++..+=..|||++..+.++..+... .+..+++++|+..-|..++..++.+...++
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 47799999998887677778888889999997776555444322 256899999999999988888876655432
Q ss_pred c--eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 569 V--RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 569 i--~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
. ........ ...-.+..|..|.+.|-. ... ..=.++.++||||+|.+.+ +...+..+...+.
T Consensus 133 ~l~~~~i~~~~----~~~I~l~NGS~I~~lss~---------~~t-~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 133 DFLQPGIVEWN----KGSIELENGSKIGAYASS---------PDA-VRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred HHhhcceeecC----ccEEEeCCCCEEEEEeCC---------CCc-cCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 1 11000000 001112345555444422 100 1112456899999997643 2233333333333
Q ss_pred C--CCcEEEEeccc
Q 001262 647 P--DRQTVLFSATF 658 (1112)
Q Consensus 647 ~--~~q~il~SAT~ 658 (1112)
. ..+++++|...
T Consensus 197 sg~~~r~iiiSTp~ 210 (534)
T PHA02533 197 SGRSSKIIITSTPN 210 (534)
T ss_pred cCCCceEEEEECCC
Confidence 2 23455555553
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.64 E-value=0.15 Score=56.67 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=67.8
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+-++++|++|+|||++..-.+... .. .|.+++++. +.|.-+. ..+..++...++.+.....+.....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~~ 141 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPAA 141 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHHH
Confidence 456778999999998655554433 22 245565555 3444333 3455555556655443322221111
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcC------CCCcEEEEe
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR------PDRQTVLFS 655 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~------~~~q~il~S 655 (1112)
. +.+.+.. .....+++||||=+-++. +......+..+...+. ++.-+++++
T Consensus 142 ~-----------------~~~~l~~-----~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~ 199 (272)
T TIGR00064 142 V-----------------AFDAIQK-----AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLD 199 (272)
T ss_pred H-----------------HHHHHHH-----HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 0 1111110 112345677777666543 1112334445544444 566688899
Q ss_pred ccccHHHHHHHHHhc
Q 001262 656 ATFPRQVEILARKVL 670 (1112)
Q Consensus 656 AT~~~~~~~l~~~~l 670 (1112)
||........+..|.
T Consensus 200 a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 200 ATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCHHHHHHHHHHH
Confidence 997665444444444
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.50 E-value=0.15 Score=59.76 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=66.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH-
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ- 582 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~- 582 (1112)
-++++|++|+|||++..-.+.. +.. .|.++++++ |.|.-|.. +++.++...++.+...+.+.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~-------~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR-------KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH-------CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH
Confidence 4677899999999865544332 222 244566665 45655543 344455556666655444433211
Q ss_pred ---HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 583 ---QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 583 ---~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+..+.. ..+++||||=+-++.. ......+..+.....|+.-+++++||.
T Consensus 171 ~~~~l~~~~~--------------------------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 171 ASEGVEKFKK--------------------------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred HHHHHHHHHh--------------------------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 1111111 1244555555543221 112234455555566776678888887
Q ss_pred cHHHHHHHHHh
Q 001262 659 PRQVEILARKV 669 (1112)
Q Consensus 659 ~~~~~~l~~~~ 669 (1112)
.......+..|
T Consensus 225 Gq~a~~~a~~F 235 (429)
T TIGR01425 225 GQAAEAQAKAF 235 (429)
T ss_pred ChhHHHHHHHH
Confidence 65555555544
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.43 E-value=0.11 Score=54.21 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+++.|++|+|||+..+-.+...+. .|..|++++. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 688999999999865555554432 2566777764 45556666655554
No 248
>PRK12377 putative replication protein; Provisional
Probab=95.39 E-value=0.15 Score=55.68 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.2
Q ss_pred cCCceEEEeccchhhhcCCC-chhHHHHHHhcCC-CCcEEEEeccccHH
Q 001262 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f-~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
+..+++|||||.+......+ ...+..|+..... ...+|+.|---+..
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 45689999999964432222 2344455555433 46677776654433
No 249
>PRK10867 signal recognition particle protein; Provisional
Probab=95.36 E-value=0.15 Score=60.16 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=33.8
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-++++|++|+|||++..-.+... ..+ .|.++++++ +.|..+. ..+..++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l-~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYL-KKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 46778999999998655544433 221 144555555 4554443 33444555567665543
No 250
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.26 E-value=0.084 Score=70.66 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHH--HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAF--VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~--llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
.+++-|.+|+..++.. +-++|.|..|+|||+++ ++-++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66888899999999863 2222322211 2356788899998776654
No 251
>PRK06893 DNA replication initiation factor; Validated
Probab=95.24 E-value=0.048 Score=59.11 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCceEEEeccchhhhcC-CCchhHHHHHHhcCC-CCcEEEEeccccHH
Q 001262 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~-~f~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
.++++|||||+|.+... .+...+..++..+.. ..++|++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45789999999987532 233355566665544 34567788876544
No 252
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.15 E-value=0.06 Score=68.60 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..|+|-|.+++.. ....++|+|..|||||.+.+.-+...|.... -....+|+|+-|+..|..+...+..++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3588999998864 3468999999999999986666655554321 123478999999999998888887754
No 253
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.14 E-value=0.14 Score=57.42 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=18.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.++.++++||||+|||+.....+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568888999999998655444433
No 254
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.11 E-value=0.012 Score=60.41 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=54.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH
Q 001262 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l 587 (1112)
|+.|+-|-|||.+..+.+...+.. ....++|.+|+.+-+..++..+...+..++++......+. ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 578999999998766554432221 1246899999999888777766665555554431000000 000111
Q ss_pred hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 588 ~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..|-+..|..+... ....++||||||=.+. .+.+..++... ..|+||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 12457777888755221 1235799999999754 45566665333 3678888864
No 255
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.11 E-value=0.063 Score=67.62 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++-|.+|+.. ....++|+|..|||||.+.+.-+...|.... .....+|+|+.|+..|..+...+..++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 377899998865 3567899999999999987766666654321 123478999999999998888777654
No 256
>PRK05642 DNA replication initiation factor; Validated
Probab=95.09 E-value=0.063 Score=58.39 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhhcC-CCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~-~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 34679999999976432 2345577777766554445566666443
No 257
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.03 E-value=0.13 Score=69.83 Aligned_cols=129 Identities=20% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++.|.+|+..++.+ +-++|.|..|+|||++ +-.++..+... ....+..++.++||--.|..+.+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~e------- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMRS------- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHHh-------
Confidence 36899999999999975 4677889999999975 33333333211 11235678889999877654421
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH--hcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001262 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC--TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~--~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
.|+... |-.+|+.... ...+. ......++||||||=.+. ...+..++.
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~-~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGE-TPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred -cCcchh------------------------hHHHHhccccccccccc-CCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 233211 1111111000 00000 112345899999998654 334556666
Q ss_pred hcCC-CCcEEEEecc
Q 001262 644 NIRP-DRQTVLFSAT 657 (1112)
Q Consensus 644 ~~~~-~~q~il~SAT 657 (1112)
.+.. ..++||+.-+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 6653 5778877766
No 258
>PRK08727 hypothetical protein; Validated
Probab=95.02 E-value=0.098 Score=56.85 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCceEEEeccchhhhcCC-CchhHHHHHHhcCC-CCcEEEEeccccHHH
Q 001262 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
.++.+|||||+|.+.... ....+..++..+.. ..++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 356799999999875332 22234445544433 334555555555443
No 259
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.00 E-value=0.12 Score=55.69 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+..+++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456799999999999975443
No 260
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.94 E-value=0.1 Score=65.93 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=73.0
Q ss_pred chhHHH-HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 698 SDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~-ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.|... ++.++.....+.++||.+||..-|..++..|.. .|+.+..+||+++..++..++..+.+|...|||+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 445443 334444444456999999999999888777665 378999999999999999999999999999999996
Q ss_pred c-ccccCCCCCCcEEEEeC
Q 001262 773 V-AARGLDVKELELVINFD 790 (1112)
Q Consensus 773 v-~~~GlDi~~v~~VI~~~ 790 (1112)
. +...+.+.++.+||.=.
T Consensus 373 ~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 373 ALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred HHhcccchhcccceEEEec
Confidence 4 44567889999988533
No 261
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.86 E-value=0.24 Score=61.38 Aligned_cols=149 Identities=20% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001262 482 IRKLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|..+..+.+..-|.+.+..++... -+++.|.-|=|||.+.-+.+.. +.... + .-.++|.+|+.+-+..++.-
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~----~-~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA----G-SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc----C-CceEEEeCCCHHHHHHHHHH
Confidence 444555556666666677777654 4777799999999887766632 22211 1 34688999999998888888
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH
Q 001262 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
+.+-+..+|+............ +..-..+..|-+.+|.... . ..++||||||=.|. .+.+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----hHHHH
Confidence 7777777765533222211000 0000122346666665431 1 15799999999764 55666
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001262 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
+++... +.++||.|+.
T Consensus 342 ~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 342 KLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHhhc----CceEEEeeec
Confidence 666554 4689999975
No 262
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.76 E-value=0.26 Score=58.11 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||++..-.+...... .|.+++++. +.|..+. ..+..++...++.+.....+.....-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHHHH
Confidence 47778999999998765554442211 134455444 3344333 33445555566665543332222111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHH
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
. .+.+.. .....+++||||=+-++.. ......+..+...+.++--+++++||.....
T Consensus 171 ~-----------------~~al~~-----~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~ 228 (428)
T TIGR00959 171 A-----------------RRALEY-----AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA 228 (428)
T ss_pred H-----------------HHHHHH-----HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH
Confidence 0 011100 0112345566665554321 1122334444444555555677788766655
Q ss_pred HHHHHHhc
Q 001262 663 EILARKVL 670 (1112)
Q Consensus 663 ~~l~~~~l 670 (1112)
...+..|.
T Consensus 229 ~~~a~~f~ 236 (428)
T TIGR00959 229 VNTAKTFN 236 (428)
T ss_pred HHHHHHHH
Confidence 55555543
No 263
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.68 E-value=0.47 Score=57.85 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=78.1
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc--------eE
Q 001262 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV--------RC 571 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i--------~~ 571 (1112)
..+..+-.++.+|=|.|||.+..+.++..+.. .+..++|.+|...-+.+++..+..++..++. .+
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~i 255 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKI 255 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceE
Confidence 33456778889999999998766555533321 2578999999999999999998888875431 11
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHH------HHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc
Q 001262 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMI------DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~------~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~ 645 (1112)
..+.||. ..|.+..|.... .+....... ..-..+++||||||.-+.. ..+..|+-.+
T Consensus 256 v~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s-~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l 318 (752)
T PHA03333 256 VTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNA-ARGQNPDLVIVDEAAFVNP----GALLSVLPLM 318 (752)
T ss_pred EEeeCCe------------eEEEEecCcccccCcceeEEecccCCC-cCCCCCCEEEEECcccCCH----HHHHHHHHHH
Confidence 2222221 123333321110 000000100 1112468999999998754 3444454444
Q ss_pred C-CCCcEEEEeccc
Q 001262 646 R-PDRQTVLFSATF 658 (1112)
Q Consensus 646 ~-~~~q~il~SAT~ 658 (1112)
. .+..+|++|.+.
T Consensus 319 ~~~~~k~IiISS~~ 332 (752)
T PHA03333 319 AVKGTKQIHISSPV 332 (752)
T ss_pred ccCCCceEEEeCCC
Confidence 3 355677777775
No 264
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.67 E-value=0.13 Score=56.25 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=30.9
Q ss_pred ccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+.+|||||||.|... -+..+.+.+........+|+...-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 4566889999999998743 3556677777766666666666554
No 265
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.64 E-value=0.22 Score=63.55 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+.+|||||+|+|.... ...|.++|...+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 568899999999986533 334556666655555455444 543
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.19 Score=55.29 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=33.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+.++++.|++|+|||..++..+...+ . .|.. ++.+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-------~g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-------AGIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-------cCCe-EEEEEHHHHHHHHHHHH
Confidence 678999999999999986655555444 3 1444 44557778877665443
No 267
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.57 E-value=0.17 Score=56.01 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC---CCCcEEEEccchhHHHHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~---~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+++++|+||.|||...--..- ..++.... .-|.++|-+|...-..-+|..+-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~----~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRR----LHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHH----HCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 4799999999999984322221 12222211 236777777877666655555443
No 268
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.52 E-value=0.12 Score=65.37 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++|-|.+++.. ....++|+|..|||||.+.+.-+...+.... .....+|+|+.|+..|.++...+...+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998764 4568999999999999987766666654321 123578999999999998888777654
No 269
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.50 E-value=0.26 Score=62.09 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=72.6
Q ss_pred chhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001262 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
+.|....+..+..... +.++||.+|++.-+..+...|.. .|..+..+||+++..+|..++..+..|..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4555555444443333 45899999999999999999976 478899999999999999999999999999999997443
Q ss_pred ccCCCCCCcEEEEeC
Q 001262 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~ 790 (1112)
. +.+.++.+||.-.
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888888644
No 270
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.49 E-value=0.13 Score=64.44 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=53.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..-..+++-|..|+-. ....++|.|..|||||.+.+.-+...|.... ..+..+|+|+.|+..|..+...+...
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 3345789999998853 3456899999999999986665555444321 12458999999999998887777664
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.46 E-value=0.13 Score=55.90 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=24.1
Q ss_pred ceEEEeccchhhhcC-CCchhHHHHHHhcCC-CCcEEEEeccccH
Q 001262 618 VTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPR 660 (1112)
Q Consensus 618 i~~vViDEah~~~~~-~f~~~i~~il~~~~~-~~q~il~SAT~~~ 660 (1112)
+.+|||||+|.+... .+...+..++..+.. ....|++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 578999999987532 233445555555433 2223444555443
No 272
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.42 E-value=0.21 Score=57.07 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHcCC----CEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 490 PMPIQAQALPVIMSGR----DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~----dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
++|+|...|..++... -+|+.||.|.|||..+.. +...+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 4689999998887542 488899999999975444 333443
No 273
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.2 Score=61.12 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=24.0
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
..++.++||||+|+|....| ..+.++|..-+....+||.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 34678999999998865433 23444444444445444444
No 274
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.35 E-value=0.12 Score=65.98 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++|-|.+|+.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+-|+..|..+...+..++
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 478999998864 3468999999999999987666665554221 123468999999999999888887754
No 275
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.34 E-value=0.39 Score=48.51 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=41.9
Q ss_pred cCCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
...+++|||||+=..++.++. ..+..++...+...-+|+++-.+|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 456899999999988877754 46777888888888888888888888766553
No 276
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.34 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=24.7
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.++.+|||||+|.|....| ..+.++|...+... +++|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v-~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHV-KFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCe-EEEEEECC
Confidence 3578999999998865433 33444555544444 44444453
No 277
>PTZ00293 thymidine kinase; Provisional
Probab=94.32 E-value=0.21 Score=52.72 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
|+-.++.||++||||.-++-.+.++... +..++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEec
Confidence 5556889999999998766665555433 5678888884
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.30 E-value=0.2 Score=60.25 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCceEEEeccchhhhcCC-CchhHHHHHHhcC-CCCcEEEEeccccHHHH
Q 001262 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~ 663 (1112)
..+++|||||+|.+.... ....+..++..+. ...++|+.|.+.|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999875322 1223444454443 34555555555544443
No 279
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.28 E-value=0.18 Score=57.63 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=25.2
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998733223445566666666666555544
No 280
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.22 E-value=0.89 Score=46.77 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=29.7
Q ss_pred CceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001262 617 RVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 617 ~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l 670 (1112)
.+.+||+|....+. +..+...+..+.....++.-+++++|+.+......+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 46688888887642 2223333444444444566667777766555544544443
No 281
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.19 E-value=0.18 Score=54.45 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=25.8
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCc-EEEEeccccH
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ-TVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q-~il~SAT~~~ 660 (1112)
..++|||||+|.+... ....+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999986432 23344455554443333 5777777654
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.19 E-value=0.31 Score=58.09 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCceEEEeccchhhhcCC-CchhHHHHHHhcC-CCCcEEEEeccccHHHHHH
Q 001262 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l 665 (1112)
..+++|||||+|.+.... ....+..++..+. ...|+|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 457899999999875432 2334445554442 3456666666666655433
No 283
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.15 E-value=0.66 Score=51.86 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=70.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE-eCCCChHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV-YGGSGVAQQ 583 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~-~gg~~~~~~ 583 (1112)
++++|-.|+|||++..-.+. .+.. .|..||+.+ ..|+-|. +.++-|++..|+.++.- +|+.+-.--
T Consensus 142 il~vGVNG~GKTTTIaKLA~-~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAK-YLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEecCCCchHhHHHHHHH-HHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 66789999999986443333 3232 366777776 4455555 44555666678877763 333322221
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-CchhHHHHHHhcCCCCc-----E-EEEec
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQ-----T-VLFSA 656 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~~~q-----~-il~SA 656 (1112)
.. .+.. ..-..+++|++|=|-||-+.. .-..+.+|..-+.+... + +++=|
T Consensus 211 fD------------------Ai~~-----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 211 FD------------------AIQA-----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HH------------------HHHH-----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 11 1111 122345666666666654422 33455666655555432 3 44478
Q ss_pred cccHHHHHHHHHh
Q 001262 657 TFPRQVEILARKV 669 (1112)
Q Consensus 657 T~~~~~~~l~~~~ 669 (1112)
|...+.-.-++.|
T Consensus 268 ttGqnal~QAk~F 280 (340)
T COG0552 268 TTGQNALSQAKIF 280 (340)
T ss_pred ccChhHHHHHHHH
Confidence 8776655555544
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.10 E-value=0.26 Score=58.94 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=28.0
Q ss_pred cCCceEEEeccchhhhcCC-CchhHHHHHHhcCC-CCcEEEEeccccHHH
Q 001262 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+..+++|||||+|.+.... ....+..++..+.. ..|+|++|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 3467899999999765321 23345555555433 346666655555443
No 285
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.09 E-value=0.17 Score=63.42 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=71.9
Q ss_pred chhHH-HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 698 SDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~-~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.|.. .++.++.....+.+++|.+||..-|..++..+.. .|+.+..+||+++..++..++..+.+|...|||+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 34443 3334444444456999999999999988877765 378999999999999999999999999999999996
Q ss_pred cc-cccCCCCCCcEEEEe
Q 001262 773 VA-ARGLDVKELELVINF 789 (1112)
Q Consensus 773 v~-~~GlDi~~v~~VI~~ 789 (1112)
.+ ...+.+.++.+||.=
T Consensus 347 ~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 347 ALIQEKVEFKRLALVIID 364 (630)
T ss_pred HHHhccccccccceEEEe
Confidence 44 356788889988853
No 286
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.03 E-value=0.72 Score=52.44 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||+.....+... .. .+..++++. .+ +..+.+ .+..+....++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~-------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KA-------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 4457778999999998654433322 21 244555554 43 443322 22333444455554433222211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC-CCchhHHHHHHhc------CCCCcEEEE
Q 001262 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNI------RPDRQTVLF 654 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-~f~~~i~~il~~~------~~~~q~il~ 654 (1112)
. ...+.+.. ....++++||||=+-++... .....+..+...+ .+..-++++
T Consensus 183 ~-----------------~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 183 S-----------------VAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred H-----------------HHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 0 01111110 11244677777777664321 1222333433322 244457888
Q ss_pred eccccHHHHHHHHHhc
Q 001262 655 SATFPRQVEILARKVL 670 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~l 670 (1112)
+||........+..|.
T Consensus 241 ~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 241 DATTGQNALSQAKAFH 256 (318)
T ss_pred ECCCChHHHHHHHHHH
Confidence 9997654433444443
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.96 E-value=0.21 Score=69.78 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH---HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFV---LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~l---lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
..+++.|.+|+..++.+ +-++|+|..|+|||++.. -++...+.. .+..++.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 36899999999999876 446777999999997651 233333222 366788899997766544
No 288
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.93 E-value=0.22 Score=51.72 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=79.4
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC--
Q 001262 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG-- 579 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~-- 579 (1112)
+....+++...+|.|||.+++--+++.+- .|.+|+|+-=.+--. -+.+...+....++.+.. .|.+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g--------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG--------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH--------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCc
Confidence 45668889999999999998888877643 366777764211110 011111121111333322 2221
Q ss_pred -----hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEE
Q 001262 580 -----VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 580 -----~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~i 652 (1112)
..+..... ...+..... ...-..+++|||||+-..++.|+. ..+..++...++..-+|
T Consensus 88 ~~~~~~~e~~~~~-----------~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 88 WETQDRERDIAAA-----------REGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred ccCCCcHHHHHHH-----------HHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 11111110 011111111 112356899999999999888864 46777788877777788
Q ss_pred EEeccccHHHHHHHHH
Q 001262 653 LFSATFPRQVEILARK 668 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~ 668 (1112)
++.-.+|+.+..++..
T Consensus 153 lTGR~~p~~Lie~ADl 168 (191)
T PRK05986 153 ITGRGAPRELIEAADL 168 (191)
T ss_pred EECCCCCHHHHHhCch
Confidence 8777788887666543
No 289
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.28 Score=55.78 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.++|+.||.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3799999999999986554
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.86 E-value=0.37 Score=57.08 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=26.0
Q ss_pred CceEEEeccchhhhcCC-CchhHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001262 617 RVTYLVMDEADRMFDMG-FEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~-f~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
.+++|||||+|.+.... ....+..++..+ ..+.++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 46799999999875432 122344445444 234565554444444443
No 291
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.85 E-value=0.5 Score=59.05 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=16.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
++|.|+||+|||++.- .++..|.
T Consensus 784 LYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHH
Confidence 3589999999997643 3445443
No 292
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.85 E-value=0.29 Score=59.39 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred chhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001262 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
+.|....+.++..... ++++||.+|++.-+..++..|... +..+..+||+++..+|..+.....+|..+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 3455555555544333 458999999999999999999764 77899999999999999999999999999999996543
Q ss_pred ccCCCCCCcEEEEeC
Q 001262 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~ 790 (1112)
. +-+.++.+||.-.
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4677888888643
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.85 E-value=0.61 Score=50.54 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=30.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.|.-+++.|++|+|||+..+..+...+ . .|..+++++. -+-..++...+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~-------~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-Q-------NGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h-------CCCcEEEEeC-CCCHHHHHHHHHH
Confidence 467788899999999976444444332 2 2456777774 3333444444443
No 294
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.76 E-value=0.45 Score=52.69 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001262 495 AQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
..++..+..|..+++.|++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4556667789999999999999998654
No 295
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.73 E-value=0.26 Score=58.44 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 493 IQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 493 iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
||.+-=..|. .+.-+||+|..|||||.+++--+...+...+..-. +..|||+.|.+.++.-+ ..+++.+|.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYi----s~VLPeLGe 285 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYI----SRVLPELGE 285 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHH----HHhchhhcc
Confidence 4444444444 45668888999999999888777666666543322 33399999999887644 445555554
No 296
>PF13173 AAA_14: AAA domain
Probab=93.70 E-value=0.44 Score=46.44 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=25.6
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.-.+|||||+|.+.+ +...+..+.... ++.++|+++-.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 356899999999853 566666666654 45566655444
No 297
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.64 E-value=0.55 Score=53.11 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=27.3
Q ss_pred cCCceEEEeccchhhhcCCCc--hhHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~--~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+.+||||+.....-..+. ..+..|+... .....||+.|--.+..+.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 456889999999843222222 2334455443 345567776666544443
No 298
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.61 E-value=0.34 Score=59.17 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred cCCceEEEeccchhhhcCC-CchhHHHHHHhcCC-CCcEEEEeccccHHHH
Q 001262 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~ 663 (1112)
+.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999875432 23345556655544 4677776666665543
No 299
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.57 E-value=0.26 Score=63.77 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=72.7
Q ss_pred chhHHHHH-HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 698 SDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|....+ .++.....+.+++|.+||..-|.+.+..|... ++.+..++|..+..++..++..+.+|..+|||+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 34544333 33333344568999999999999998887753 67788999999999999999999999999999996
Q ss_pred -cccccCCCCCCcEEEEeC
Q 001262 773 -VAARGLDVKELELVINFD 790 (1112)
Q Consensus 773 -v~~~GlDi~~v~~VI~~~ 790 (1112)
.+...+.+.++.+||.-.
T Consensus 563 ~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred HHhhCCCCcccCCEEEeec
Confidence 444678889999988633
No 300
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.53 E-value=0.35 Score=55.67 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987432 2334555666555555544433
No 301
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.53 E-value=0.23 Score=56.24 Aligned_cols=64 Identities=20% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 482 IRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
+...|+ +++.|...|-.++ .+.++|++|+||||||+. +-.++..+...+ .+.+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 344454 5567777665554 567899999999999964 455665554322 133566666777763
No 302
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.52 E-value=0.28 Score=50.16 Aligned_cols=52 Identities=13% Similarity=0.290 Sum_probs=41.6
Q ss_pred CCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001262 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++|||||+-..++.|+. ..+..++...++...+|++.-.+|+.+..++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 46899999999998888854 46777888888888888888888888766654
No 303
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.41 E-value=0.74 Score=51.03 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHH----cCC-CEEEEcCCCChHHHHHH
Q 001262 490 PMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~-dvii~a~TGsGKT~~~l 522 (1112)
+++.+.+++..+. .+. .++++|++|+|||+.+-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555566665543 333 57889999999997544
No 304
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.38 E-value=0.37 Score=64.97 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
+.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|..+...+...+...-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 35899999997 4688999999999999999888888777643 1124689999999999988888777544311
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh
Q 001262 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
-. .. .......| +..-...-|+|-..|...+........+|+ -.|=|+||...
T Consensus 74 ~~-~p--~~~~L~~q---~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQ-EP--NSKHLRRQ---LALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred hc-Cc--hhHHHHHH---HhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 00 00 00011122 222235678898888655544443333442 24567888874
No 305
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.63 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.++++.|+||+|||.+ +..++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 3689999999999975 4445555544
No 306
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=93.21 E-value=0.12 Score=59.96 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 522 llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
++-++.|+.. .+..|||.-| |.+.+.+.+++|+...|+.+-.+
T Consensus 496 clrl~r~F~h-------knHLClVFE~---LslNLRevLKKyG~nvGL~ikaV 538 (752)
T KOG0670|consen 496 CLRLFRHFKH-------KNHLCLVFEP---LSLNLREVLKKYGRNVGLHIKAV 538 (752)
T ss_pred HHHHHHHhhh-------cceeEEEehh---hhchHHHHHHHhCcccceeehHH
Confidence 4555555543 2556777777 67777888888887777665443
No 307
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.17 E-value=0.52 Score=58.86 Aligned_cols=93 Identities=22% Similarity=0.159 Sum_probs=76.6
Q ss_pred cchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-C-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001262 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-G-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-~-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
-+.|...++.++..... ++++||.++.+..+..+...|... | ..+..+|++++..+|........+|..+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 34677777887777665 458999999999999999999865 4 67999999999999999999999999999999965
Q ss_pred ccccCCCCCCcEEEEeC
Q 001262 774 AARGLDVKELELVINFD 790 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~ 790 (1112)
+.- +-++++.+||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 432 5677788888643
No 308
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.17 E-value=0.29 Score=57.45 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
|-......+..+..++++|+.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445556677778889999999999999997654
No 309
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.94 Score=56.09 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998655443
No 310
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.41 Score=56.79 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|++||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999998655443
No 311
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.06 E-value=0.65 Score=47.96 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
|+=.+++||+.||||...+.-+.++... |.+++|..|-..- .++...+...-|...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~--- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS--- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEeccccc-------------ccccceeeeccCCcc---
Confidence 3446788999999999766665555332 6678888884211 122233333333311
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
.-++|-++..+.+.+.... ....+.+|.||||+-+
T Consensus 60 -------~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~ 94 (201)
T COG1435 60 -------EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFF 94 (201)
T ss_pred -------cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhC
Confidence 3466667777777776532 1222789999999963
No 312
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.04 E-value=0.28 Score=55.78 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHCCCCCChHHHHHHHHHH-HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 480 ETIRKLNYEKPMPIQAQALPVI-MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~i-l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..|...|+ +++.|...|..+ ..+.++|++|+||||||+ ++..++..+...+ ...++++|-.+.||.
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 44445554 456777777654 467789999999999995 4555555443211 234567777777763
No 313
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.03 E-value=0.57 Score=53.16 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 488 EKPMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
..++|+|..++..+. .|+ -+|+.|+.|+||+..+.. +...++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 457789998888765 343 488999999999975443 4444443
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.91 E-value=0.34 Score=52.76 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+. .|..+|+++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 3567888999999999866655665543 255677777 345556666665554
No 315
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.89 E-value=0.76 Score=56.85 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=24.2
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
+..+.+|||||+|.|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999865422 234555555545555455444
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.85 E-value=0.28 Score=47.52 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.1
Q ss_pred ceEEEeccchhhhcCC
Q 001262 618 VTYLVMDEADRMFDMG 633 (1112)
Q Consensus 618 i~~vViDEah~~~~~~ 633 (1112)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999887654
No 317
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.69 Score=56.75 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.++||||+|+|....+ ..+.+++...+.... ++|.+|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~-FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVK-FLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcE-EEEEECChH
Confidence 4578999999998754333 345555555444443 444445433
No 318
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.55 Score=59.39 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.+|||||||+|... -...+.+++..-+....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEE-ECCCch
Confidence 35789999999998532 22344455555444444444 344333
No 319
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.75 E-value=0.78 Score=54.46 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=22.5
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|+|.. .+...++..+. ...++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 457899999998743 22333444443 34567777764
No 320
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.73 E-value=0.71 Score=54.95 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHHc------C----CCEEEEcCCCChHHHHHH-HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001262 489 KPMPIQAQALPVIMS------G----RDCIGVAKTGSGKTLAFV-LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~------g----~dvii~a~TGsGKT~~~l-lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.+-|+|.-++-.|+. | +-++|..+-+-|||..+. +.+...+... ..+....|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 456999999998882 2 246777888889997544 3333333332 34678899999999888888
Q ss_pred HHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCc
Q 001262 558 SDIRKFAKVMG-VRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~ 635 (1112)
..++..+.... +... ..+.. ...|++.--...+..+...... .+-.+..++|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~-~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNT-VDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCCc-ccCCCcceEEEehhhhhcCHH--
Confidence 87777655432 1000 00000 0112222111222333332222 233467899999999865432
Q ss_pred hhHHHHHHhc--CCCCcEEEEec
Q 001262 636 PQITRIVQNI--RPDRQTVLFSA 656 (1112)
Q Consensus 636 ~~i~~il~~~--~~~~q~il~SA 656 (1112)
..+..+..-+ ++..+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 4444444433 45666666654
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.72 E-value=0.27 Score=54.77 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=25.8
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
..|.-+++.|++|+|||+..+..++..+.. .+..++++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEE
Confidence 456778889999999997555444443322 255677776
No 322
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.68 E-value=0.31 Score=52.37 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred cCCceEEEeccchhhhcCC-CchhHHHHHHhcC-CCCcEEEEeccccHHH
Q 001262 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~-f~~~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||.+|.+.... ....+..++..+. .+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4568899999999876432 2344555555553 4567777777776554
No 323
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.67 E-value=0.63 Score=56.02 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=28.8
Q ss_pred ccccccCC-CCHHHHHHHHH--CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001262 466 IKTWHQTG-LTSKIMETIRK--LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 466 i~~~~~~~-l~~~l~~~l~~--~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
-.+|.+++ |...+...... +.+..|--+....++ ..+.+|+.||+|+|||+.
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 35788876 55544333222 222222222222221 246799999999999974
No 324
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.61 E-value=0.69 Score=58.34 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=24.3
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
...+|||||+|+|... +...++..+ ...+++++++|.++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999986421 222333333 345678888875543
No 325
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.59 E-value=0.41 Score=50.81 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
++|+.||.|+|||+.+-
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999997433
No 326
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.35 Score=57.97 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=25.0
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
...+.++||||+|.|....| ..+.+.+...++...+| |.+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeCCh
Confidence 45789999999998764332 23444455444443333 444533
No 327
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.43 E-value=0.3 Score=54.07 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|+.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997544
No 328
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.43 E-value=0.58 Score=55.17 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.5
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.|++|+|||.+ +..++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999975 444555543
No 329
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.39 E-value=0.74 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.5
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.||+|+|||.+ +..++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999965 444555543
No 330
>PRK04195 replication factor C large subunit; Provisional
Probab=92.37 E-value=0.61 Score=56.54 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 331
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.18 E-value=0.88 Score=46.62 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=41.1
Q ss_pred CceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh
Q 001262 617 RVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~ 669 (1112)
.+++||+||.-.++..|+. ..+..++...|....+|++.-.+|+.+..++...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 5899999999998888855 4577777777777777777777888877666543
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.15 E-value=0.46 Score=53.63 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHCCCCCChHHHHHHHHHH-HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 480 ETIRKLNYEKPMPIQAQALPVI-MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~i-l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..|...|+ +++.|...|-.+ ..+..+|++|+||||||+. +-.++..+...+ ...+++++-.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444453 445555555544 4567899999999999974 455555544321 134566777777763
No 333
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.12 E-value=0.8 Score=55.30 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.1
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|++||.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998655443
No 334
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=1 Score=55.69 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=25.2
Q ss_pred ccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
.+..+.+|||||+|.|.... ...+.+.+...++...+||.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 34578899999999886432 234444555555555555543
No 335
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.90 E-value=0.29 Score=53.40 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=29.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQI 556 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~ 556 (1112)
.|.-++|.|++|+|||...+-.++..+.. .+..+++++ |..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHHH
Confidence 45667888999999997544444444332 155677777 444555443
No 336
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.90 E-value=0.77 Score=52.98 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=24.7
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||.|-... ...+.+++...+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999985322 334555666544444445554
No 337
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.87 E-value=0.33 Score=56.56 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEE
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~ 654 (1112)
....+|||||+|.|....+ ..+.+.+...+....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999998864322 2344444444444444443
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.85 E-value=0.41 Score=51.73 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=32.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..+...+.. .|..|++++- .+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 34678889999999998666666665543 0345777763 33445555555543
No 339
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.73 E-value=1.4 Score=53.70 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=24.3
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
.....+|||||||+|.... ...+.+++...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999976432 234555555544444444433
No 340
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.71 E-value=0.86 Score=55.47 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=80.3
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC--ceEEEEeCCC
Q 001262 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGS 578 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~--i~~~~~~gg~ 578 (1112)
.+..+-.++..|=-.|||+... +++..+... -.|-.+++++|.+..+..++.++..++..+. -.+..+.| .
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 3445667888899999998655 555444321 1377899999999999999999998776431 11112222 1
Q ss_pred ChHHHHHHHhcC--CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEe
Q 001262 579 GVAQQISELKRG--TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFS 655 (1112)
Q Consensus 579 ~~~~~~~~l~~g--~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~S 655 (1112)
.+ .-.+..| .-|.++|- -..+.++ =..+++||||||+-+-+. .+..++-.+ ..+.++|++|
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiR---GqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~IS 387 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIR---GQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVS 387 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCcc---CCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEe
Confidence 11 0011122 24445421 0111111 125789999999987643 333333222 1378899999
Q ss_pred ccccH
Q 001262 656 ATFPR 660 (1112)
Q Consensus 656 AT~~~ 660 (1112)
.|...
T Consensus 388 S~Ns~ 392 (738)
T PHA03368 388 STNTG 392 (738)
T ss_pred cCCCC
Confidence 88654
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.70 E-value=1.3 Score=53.03 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=28.2
Q ss_pred CceEEEeccchhhhcCC-CchhHHHHHHhcCC-CCcEEEEeccccHHHHHH
Q 001262 617 RVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l 665 (1112)
.+++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999876432 22334445544433 345555555555555444
No 342
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.65 E-value=1.5 Score=50.85 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHH
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
....+|++||.|- .|.+-...+..++..+ ....-+|.+|-+.|..+
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3467999999993 2333344555666555 34556777788877653
No 343
>PLN03025 replication factor C subunit; Provisional
Probab=91.51 E-value=1.4 Score=50.37 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=23.5
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|.|.... ...+..++...+.... ++|+++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 47899999999986432 3344555554444443 4444443
No 344
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=0.92 Score=52.65 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=24.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|||||+|.|-. .-...+.+++...+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45678999999998742 2233444555544444444554444
No 345
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.41 E-value=0.39 Score=59.01 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH-HHHHHHhh
Q 001262 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH-SDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~-~~~~~~~~ 565 (1112)
..+|+|.+.+.++... +.|+++..+-+|||.+.+..+...+... ..-+|++.||..+|..+. ..|..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5679999988887654 5788899999999996555444333332 224689999999999876 33444443
No 346
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.40 E-value=3.8 Score=44.46 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..++..+. .|..|+++.-- +-..++...+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456888899999999865555554432 25566776632 3334444545443
No 347
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.40 E-value=0.52 Score=59.20 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=53.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcC-----CCeee-ecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKHG-----YPCLS-LHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~-----~~~~~-ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.+++|.+||..-+.++++.|.+.. +.+.. +||.|+..++..+++.|.+|..+|||+|+.+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 45799999999999999999987752 44433 99999999999999999999999999997553
No 348
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.39 E-value=0.44 Score=50.12 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=25.2
Q ss_pred CceEEEeccchhhhcCCCc-----hhHHHHHHhcCCC-CcEEEEeccccHHHHHHHHH
Q 001262 617 RVTYLVMDEADRMFDMGFE-----PQITRIVQNIRPD-RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~-----~~i~~il~~~~~~-~q~il~SAT~~~~~~~l~~~ 668 (1112)
.-++|||||||.++..... +.+...+...+.. .-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 4579999999988765433 2333445444443 3455555554 444444443
No 349
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=1.4 Score=53.58 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
.++.++||||+|.|....| ..+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999998764333 34555666655555444433
No 350
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.32 E-value=0.96 Score=54.06 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|.-+++.|++|+|||+..+..+... .. .+.++|++.- .+-..|+...+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~-a~-------~g~~vlYvs~-Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARL-AA-------AGGKVLYVSG-EESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEEc-cccHHHHHHHHHH
Confidence 4567888999999997544444433 22 2456788764 4445666555444
No 351
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=0.93 Score=55.35 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=24.1
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.++||||+|.|....+ ..+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 34678999999998764332 23445555544445444443
No 352
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.31 E-value=0.43 Score=49.50 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001262 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+-.+.++++.|++|+|||..+...+...+.. |..|+++ ++.+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeEe-ecCceeccc
Confidence 3467889999999999998655444444332 4455554 555665543
No 353
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.30 E-value=0.76 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|++||.|+|||+++.+ +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999986543 344443
No 354
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.27 E-value=0.78 Score=60.92 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=64.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCCCCCCcEEE
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLDVKELELVI 787 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlDi~~v~~VI 787 (1112)
.+.++||.|||..-|.+++..|... ++.+..++|+.+..++..++..+.+|..+|||+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4569999999999999998888753 56788899999999999999999999999999996 444567778888888
Q ss_pred E
Q 001262 788 N 788 (1112)
Q Consensus 788 ~ 788 (1112)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 355
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.26 E-value=0.97 Score=55.52 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.1
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.|+.|+|||+++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999998766544
No 356
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.22 E-value=0.46 Score=55.00 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001262 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
+...|+.-+.+++.||.|.||+|||.+..
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvTLq 37 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVTLQ 37 (502)
T ss_pred CceecChhhccccceeeccCCCCceehHH
Confidence 34456777889999999999999997644
No 357
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.22 E-value=1.8 Score=44.09 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=26.7
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+.++|||+||.|... -...+.+++..-+....+||+|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46889999999987532 3445666666666566555555443
No 358
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.11 E-value=0.18 Score=52.33 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCC-CcEEEEecc
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSAT 657 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~-~q~il~SAT 657 (1112)
....++|+||...-+|......+..++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456899999999888877666776666665433 556665544
No 359
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.10 E-value=1.2 Score=52.33 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=26.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.....++||||+|+|.... ...+.+++..-++. -++++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHH
Confidence 3467899999999985432 23455555544334 445555554433
No 360
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.09 E-value=0.59 Score=53.34 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=18.9
Q ss_pred CCC-EEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 504 GRD-CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 504 g~d-vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
... +|+.||.|+|||.++.. +...+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~-lA~~l~~ 50 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA-LAKELLC 50 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH-HHHHHhC
Confidence 345 89999999999986544 4444443
No 361
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.08 E-value=1.2 Score=53.45 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=14.7
Q ss_pred EEEEcCCCChHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp 524 (1112)
+|+.||.|+|||+.+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999865543
No 362
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.07 E-value=0.94 Score=55.93 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.++||||+|+|....|. .+.+++...+....+ +|.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~f-IL~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKF-VLATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEE-EEEECCchh
Confidence 46889999999998654332 233444443333333 444454433
No 363
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=1 Score=51.00 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.+|.+||.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999743
No 364
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.87 E-value=1.7 Score=55.26 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=27.1
Q ss_pred ceEEEeccchhhhcCCC----chhHHHHHHhcCCCCcEEEEeccccHHH
Q 001262 618 VTYLVMDEADRMFDMGF----EPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 618 i~~vViDEah~~~~~~f----~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
-.+|+|||+|.++..|- ...+..++..+-....+.++.||-+...
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999876542 1233334443333445777777766553
No 365
>CHL00181 cbbX CbbX; Provisional
Probab=90.85 E-value=1.1 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
|.++|+.|++|+|||+++-+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999865543
No 366
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=90.81 E-value=0.16 Score=58.85 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=4.4
Q ss_pred EEEcCCCCh
Q 001262 508 IGVAKTGSG 516 (1112)
Q Consensus 508 ii~a~TGsG 516 (1112)
+|+|-||-|
T Consensus 435 ~V~~~~GkG 443 (752)
T KOG0670|consen 435 EVQGYTGKG 443 (752)
T ss_pred EEEeccccc
Confidence 444555544
No 367
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.68 E-value=1.5 Score=48.45 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=25.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-++|.|++|+|||+..+..+.+.+. .|..+++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 3566888999999999755544444332 255677777
No 368
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.66 E-value=2.8 Score=48.60 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=78.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++.+|=-|||||++..-.+. ++.. .+.++|+++ ..|--|. +.++.++...++.+.....+.+ +..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk-------~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~-Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKK-------KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKD-PVEI 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHH-------cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCC-HHHH
Confidence 67789999999987554443 3333 255666665 3344443 5677777777877665522221 2111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.. ..+.. .....+++||||=|-|+- +...-..+..|-..++|+--++++=|++.....
T Consensus 171 ak----------------~al~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 171 AK----------------AALEK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred HH----------------HHHHH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 10 01111 123346777888777642 333455677788888888888888898887777
Q ss_pred HHHHHhc
Q 001262 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~l 670 (1112)
..+..|-
T Consensus 230 ~~A~aF~ 236 (451)
T COG0541 230 NTAKAFN 236 (451)
T ss_pred HHHHHHh
Confidence 7776664
No 369
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.64 E-value=1.3 Score=54.45 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=25.7
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.+|||||+|.|....| ..+.+++...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 45688999999998864332 23445555544444344433 5443
No 370
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.64 E-value=2.9 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
..++|++|++|+|||...-..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la 224 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLA 224 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3589999999999997644333
No 371
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.41 E-value=0.93 Score=55.31 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCCcE
Q 001262 717 ILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
+||++||++-|.+++..+... ++.++.++||++...+...+. .| .+||||| +.+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 567899999999877765544 46 9999999 466666 89999999
Q ss_pred EEE
Q 001262 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 372
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.40 E-value=3.2 Score=51.59 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=23.2
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+....+|||||+|.|.... ...+...+...++. .+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeC
Confidence 4567899999999875422 22334444443333 34444444
No 373
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.38 E-value=2.1 Score=43.93 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=35.3
Q ss_pred cCCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
-..+++|||||+-..++.++. ..+..++...++..-+|++.-.+|+.+...+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 356899999999999888865 4577778877777888888888888776655
No 374
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.27 E-value=0.42 Score=53.61 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001262 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
..|...++-|...|-.+..++ ++|++|.||||||+. +-.++..+ ...-+++.+=-|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i--------~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI--------DSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC--------CCcccEEEEeehhhhccC
Confidence 345678899999888877665 999999999999973 22222221 112367777787777443
No 375
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.25 E-value=0.71 Score=50.24 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=20.2
Q ss_pred CchHHHHHHHhcCCCccccCCceEEEeccchhhh
Q 001262 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 597 Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
-|+-|..+| ++|..-+++.|||.|+|.
T Consensus 90 K~gDlaaiL-------t~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAIL-------TNLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHH-------hcCCcCCeEEEehhhhcC
Confidence 455566666 467777899999999964
No 376
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.23 E-value=1.7 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCceEEEeccchhhhcCC--CchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~--f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+..-+||+|-|+.+-|++ ..+.+.++-..++.+.-.|+||+++++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 456799999999998887 3444555555555555568899998765
No 377
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.21 E-value=1.6 Score=48.85 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.++++.||+|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998654
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.17 E-value=1.2 Score=55.21 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=25.9
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
...+.++||||+|.|.... ...+.+++...++.. +++|.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~-~fIl~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHV-KFIFATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCe-EEEEEeCChhh
Confidence 4568899999999875422 234455555544444 33344454433
No 379
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.17 E-value=0.44 Score=55.09 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.-++++||||||||+. +..++.++..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456788899999999974 4556666543
No 380
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.17 E-value=1.7 Score=51.23 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.||.|+|||+++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998655443
No 381
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.11 E-value=2.3 Score=49.34 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=63.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH----HHHHHHHhhh-cCceEEEEeCCCChHH
Q 001262 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI----HSDIRKFAKV-MGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~----~~~~~~~~~~-~~i~~~~~~gg~~~~~ 582 (1112)
|+.++.|+|||.+.++.++.++...+. +..++++ ||..-+... ...+..+... +.+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE--
Confidence 577899999999988888888776431 2344555 665554442 2233333333 22222211111100
Q ss_pred HHHHHhcCCeEEEeCchH--HHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc--
Q 001262 583 QISELKRGTEIVVCTPGR--MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF-- 658 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~--L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~-- 658 (1112)
+..|..|.+.+-.. -..-+.. ..+++|||||+-.+.+..+...+...+..... ...+++|.|+
T Consensus 73 ----~~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~ 139 (384)
T PF03237_consen 73 ----LPNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNP 139 (384)
T ss_dssp ----ETTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---S
T ss_pred ----ecCceEEEEeccccccccccccc--------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCC
Confidence 13556666666331 1112211 35789999998876543333333333222222 2222445443
Q ss_pred cHHHHHHHHHhcCCC
Q 001262 659 PRQVEILARKVLNKP 673 (1112)
Q Consensus 659 ~~~~~~l~~~~l~~p 673 (1112)
...+..+........
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 140 GGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSHHHHHHHHHHCTS
T ss_pred CCceeeeeehhhcCC
Confidence 234444555555444
No 382
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.02 E-value=2.7 Score=54.72 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
..++|++||+|+|||...-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999976543
No 383
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.01 E-value=1.8 Score=49.67 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
+|+|...+..+.. + +-+|+.|+.|.||+..+...+ ..+..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A-~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA-QGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH-HHHcC
Confidence 5777777777653 2 357889999999997654433 34433
No 384
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.00 E-value=1.3 Score=53.82 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=72.9
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHH----HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-
Q 001262 700 RFLRLLELLGEWYEKGKILIFVHSQEKC----DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA- 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~----~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~- 774 (1112)
-+..++..+.....+.++.+-+||---| ..+..+|...|+.+.++.|.+....|..++....+|.++|+|.|-++
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 3455666666666677999999996555 45555566679999999999999999999999999999999999755
Q ss_pred cccCCCCCCcEEEE
Q 001262 775 ARGLDVKELELVIN 788 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~ 788 (1112)
...+++.++-+||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 57899999999985
No 385
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.97 E-value=1.1 Score=50.05 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.+|+.||.|+|||..+-
T Consensus 164 SmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR 180 (554)
T ss_pred ceEEecCCCCchHHHHH
Confidence 69999999999997543
No 386
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.94 E-value=1.1 Score=52.70 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=30.6
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001262 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.+--....+.|.. +.+..|.-++...+ -..+.+|+.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 34567777655555554443 22222222222111 23578999999999999853
No 387
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.92 E-value=1.2 Score=55.74 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=77.1
Q ss_pred cccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 695 RPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~-~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..-+.|....+.++......| ++||.+|-+.....+...|.. .|.++..+|++++..+|..+.....+|..+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 345677788888888777665 899999999988888888876 488999999999999999999999999999999995
Q ss_pred cccccCCCCCCcEEEE
Q 001262 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
.+- =+-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 443 245677788775
No 388
>PF05729 NACHT: NACHT domain
Probab=89.90 E-value=3.4 Score=41.53 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.5
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++|.|+.|+|||+. +..++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 368889999999975 4444544444
No 389
>PRK04328 hypothetical protein; Provisional
Probab=89.84 E-value=1.4 Score=48.42 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=33.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..+...+.. |..+++++ +.+-..++...+..|
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 35668889999999997655555554332 55667776 444445555555554
No 390
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.84 E-value=0.7 Score=50.20 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=63.0
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCC----ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccc-cCCCCcc
Q 001262 738 GYPCLSLHGAKDQTDRESTISDFKSNV----CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT-GRAGRKG 812 (1112)
Q Consensus 738 ~~~~~~ihg~~~~~~R~~~~~~F~~g~----~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~-gR~G~~g 812 (1112)
++.+..++++.+... -.|.++. ..|+|+=+.++|||.++++.+..+.--+...+++.|+.==- -|.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 456666665544322 2333333 78999999999999999999999999999888888865323 3777788
Q ss_pred EEEEEecCCccCchHHHHHH
Q 001262 813 CAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 813 ~~~~~~~~~d~~~~~~i~~~ 832 (1112)
.|-+|+++.-...+..|..+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred ceEEecCHHHHHHHHHHHHH
Confidence 99988876544444444433
No 391
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.77 E-value=0.56 Score=54.38 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=31.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.++.++|+++.+++.+. ..+..+|++|+||||||+. +..++.++..
T Consensus 128 ~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 128 DIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3446777777775544321 2334688899999999974 5667777654
No 392
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.67 E-value=0.43 Score=57.35 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+.||.+.+..+. .|+-.|+-+|||+|||+..+-.++..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68899998887665 7898999999999999988877776654
No 393
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.63 E-value=0.6 Score=55.04 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 491 MPIQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++.|.+.+-.++.... +|+.||||||||+. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5788888877776543 55669999999975 5555655443
No 394
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.50 E-value=1 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001262 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
-.|+-++|+|++|+|||+. +..+.+.+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 3788999999999999974 33344443
No 395
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.50 E-value=0.38 Score=58.31 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=61.7
Q ss_pred HHhhcCCccEEEecCcccccCCCCCCcEEEE--------eCCCCCHHHHHHHHccccCCCCc-cEEEEEe-cC--CccCc
Q 001262 758 SDFKSNVCNLLIATSVAARGLDVKELELVIN--------FDAPNHYEDYVHRVGRTGRAGRK-GCAITFI-SE--EDAKY 825 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------~~~p~s~~~y~QriGR~gR~G~~-g~~~~~~-~~--~d~~~ 825 (1112)
++|.+|...|-|-+.+++-||.+..-..|+| +.+|||....+|..|||.|..+. +--|+|+ +. .+..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 5799999999999999999999987666654 88999999999999999998763 4445544 32 46666
Q ss_pred hHHHHHHHhhc
Q 001262 826 SPDLVKALELS 836 (1112)
Q Consensus 826 ~~~i~~~l~~~ 836 (1112)
+..+.+.|+.-
T Consensus 931 AS~VAKRLESL 941 (1300)
T KOG1513|consen 931 ASIVAKRLESL 941 (1300)
T ss_pred HHHHHHHHHhh
Confidence 66667766643
No 396
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.37 E-value=1.7 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+-+|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998655443
No 397
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=89.34 E-value=0.028 Score=68.81 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.0
Q ss_pred EEEEEec
Q 001262 813 CAITFIS 819 (1112)
Q Consensus 813 ~~~~~~~ 819 (1112)
.++.|+.
T Consensus 494 v~~~~~~ 500 (509)
T TIGR01642 494 VVAAFYG 500 (509)
T ss_pred EEEEEeC
Confidence 3444443
No 398
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.34 E-value=2 Score=49.88 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|.-+++.|++|+|||+..+..+... .. .+..+|++.-. +-..|+...+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~-a~-------~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL-AK-------RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEECC-cCHHHHHHHHHH
Confidence 4567888999999997554444333 22 23467777643 334565544444
No 399
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.30 E-value=0.98 Score=52.45 Aligned_cols=69 Identities=16% Similarity=0.012 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001262 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+-..|..+.-.+-.|.- .|.|=.|||||...++-+. +|... ....+++|.+=|+.|+.++...+.+|+-
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHH
Confidence 34567776655556655 5678899999986555443 33322 2356789999999999999998888873
No 400
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.20 E-value=1 Score=51.64 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
++..+.++|++|+||||||+ ++-.++.++-. ..+++++=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34467899999999999996 34555555322 33555555666664
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.17 E-value=0.56 Score=53.80 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 499 ~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
.++..+.++|++|+||||||+. +-.++..+- ....++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 3455788999999999999963 444444321 133566666777764
No 402
>PHA00729 NTP-binding motif containing protein
Probab=89.16 E-value=2.2 Score=45.75 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=36.6
Q ss_pred eEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC-CCc----hhHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001262 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFE----PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 592 ~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-~f~----~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..++.+...|+..+.... .....+.+||||++---+.. .|. -....+...++...+++.|...-|..+...+
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 344444455555443211 11234678999994321111 011 1223344445555667777777666666555
Q ss_pred HH
Q 001262 667 RK 668 (1112)
Q Consensus 667 ~~ 668 (1112)
+.
T Consensus 137 r~ 138 (226)
T PHA00729 137 RE 138 (226)
T ss_pred Hh
Confidence 54
No 403
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.13 E-value=2.4 Score=48.42 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHH
Q 001262 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~ 525 (1112)
+|+|...|..+.. + +-+|+.||.|+|||..+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 5788888877763 2 248899999999997554433
No 404
>PHA00350 putative assembly protein
Probab=89.05 E-value=3.4 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHH-HHHHHHhc
Q 001262 507 CIGVAKTGSGKTLAFVL-PMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll-p~l~~l~~ 531 (1112)
.|+.|..|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57789999999987665 34444443
No 405
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.03 E-value=1.9 Score=46.48 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..+...+. .+..|++++- .+-..++...+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~--------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK--------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 456788899999999754444444432 2556777764 34456665555544
No 406
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.97 E-value=1.9 Score=50.13 Aligned_cols=70 Identities=16% Similarity=0.374 Sum_probs=53.3
Q ss_pred CeE-EEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCC
Q 001262 715 GKI-LIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 715 ~~v-LIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
|++ ||.|+|++-|..++...++ +|+.++++|||.+..++...|+ . ..-|+|||+ ++- -++|+..+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~-g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E-GAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c-CCeEEEechHHHHHHHHhhcccceee
Confidence 454 6778999988887655544 5899999999999888877665 3 467999994 222 58899999
Q ss_pred cEEEE
Q 001262 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
+++|+
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 98775
No 407
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.94 E-value=0.72 Score=47.64 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.++.||++||||..++.-+.+. .. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~-~~-------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRY-EI-------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HH-------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHH-Hh-------CCCeEEEEEecc
Confidence 5778999999998655444333 22 266789998853
No 408
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.94 E-value=3 Score=49.81 Aligned_cols=88 Identities=11% Similarity=0.222 Sum_probs=64.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCCcE
Q 001262 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
.+||.+||++-|..+...+... ++.+.+++|+.+...+...++ . -+.|+||| +.+..| +++..|.+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCccccceeE
Confidence 6999999999999999888775 455889999999876665543 3 37899999 445543 77888888
Q ss_pred EEE--------eCCCCCHHHHHHHHccccC
Q 001262 786 VIN--------FDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 786 VI~--------~~~p~s~~~y~QriGR~gR 807 (1112)
||. .++-..+...++.+++.-|
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 884 3333345566666666655
No 409
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.85 E-value=2.6 Score=48.00 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=24.4
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
.....++|||+||.|... -...+.+++..-++...+|++|
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 346789999999998632 2344555555544444444433
No 410
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.76 E-value=3.5 Score=53.39 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|++|+.|+|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 589999999999997543
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.68 E-value=0.69 Score=57.37 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=38.2
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.--+||||.-|++.+...-..+..++++.+++.++|+.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3459999999999988888889999999999999999998865
No 412
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.65 E-value=1.1 Score=50.71 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||.|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999996433
No 413
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.57 E-value=1.8 Score=57.00 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=34.6
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.--+||||.+|.+-+......+..++...++...+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999886555566788888888888999898888543
No 414
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=5.8 Score=43.48 Aligned_cols=125 Identities=16% Similarity=0.265 Sum_probs=70.1
Q ss_pred HHHHHcCC-----CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEE
Q 001262 498 LPVIMSGR-----DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 498 i~~il~g~-----dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
+|.++.|+ .+|+.||.|+||+.. .-++..- .+ ..++-+.+..|+..|.-+-.++.+.+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVATE---------An-STFFSvSSSDLvSKWmGESEkLVknL----- 217 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVATE---------AN-STFFSVSSSDLVSKWMGESEKLVKNL----- 217 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHhh---------cC-CceEEeehHHHHHHHhccHHHHHHHH-----
Confidence 35566664 488899999999953 3333220 11 45778888888887766655543321
Q ss_pred EEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC---CchhHHHH----HHhc
Q 001262 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQITRI----VQNI 645 (1112)
Q Consensus 573 ~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~---f~~~i~~i----l~~~ 645 (1112)
..+.. -+.-++|.|||+|.|.... -.....+| +.++
T Consensus 218 -----------------------------FemAR--------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 218 -----------------------------FEMAR--------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM 260 (439)
T ss_pred -----------------------------HHHHH--------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh
Confidence 11111 1234688999999776432 11222222 2222
Q ss_pred ----CCCCcEEEEeccccHHH-HHHHHHhcCCCeEE
Q 001262 646 ----RPDRQTVLFSATFPRQV-EILARKVLNKPVEI 676 (1112)
Q Consensus 646 ----~~~~q~il~SAT~~~~~-~~l~~~~l~~p~~i 676 (1112)
..+--++++.||-.+++ ..-++.-+..-++|
T Consensus 261 qGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 261 QGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred hccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 23345889999966654 44444444444433
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.39 E-value=1.1 Score=48.91 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.9
Q ss_pred HHcCCCEEEEcCCCChHHH
Q 001262 501 IMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~ 519 (1112)
+-.|+.++++|+.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4478899999999999996
No 416
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.38 E-value=0.85 Score=55.72 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+-+|+.||.|+|||..+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999998655433
No 417
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.36 E-value=5.7 Score=48.09 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 491 MPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 491 t~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|--|..|+-.++. .--+-+.|.-|-||+.+..+.+...+... --.+.|..|.-+-..-++.-+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-------ysnIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-------YSNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-------cceEEEcCCChHHHHHHHHHHHcc
Confidence 4567777655442 23466679999999998888887766542 123456668877655544433332
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhc---CC------------eEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh
Q 001262 564 AKVMGVRCVPVYGGSGVAQQISELKR---GT------------EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~---g~------------~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
+..+++.-..- .+.+..... .+ -|=+..|.- ...|....+||||||-.
T Consensus 328 fDaL~Yqeh~D------y~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D-----------~~kl~q~eLlVIDEAAA 390 (1011)
T KOG2036|consen 328 FDALEYQEHVD------YDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHD-----------HQKLGQAELLVIDEAAA 390 (1011)
T ss_pred hhhhcchhhcc------hhhhhhcChhhhhhEEEEEEeccccceeEeeccch-----------hhhccCCcEEEechhhc
Confidence 22222211100 000111000 00 122223321 12356788999999998
Q ss_pred hhcCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001262 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+. .+.++.++ ...+|+|+.|+.
T Consensus 391 IP----Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 391 IP----LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred CC----HHHHHHhh-----cceeEEEeeccc
Confidence 64 55666655 345888999975
No 418
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.20 E-value=0.91 Score=56.19 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.||.|+|||+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998655443
No 419
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.08 E-value=6.9 Score=40.26 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001262 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..+++|||||+-..++.|+. ..+..++...++...+|++.-.+|+.+..++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 56899999999998888865 4577788888888888888888888876554
No 420
>PF12846 AAA_10: AAA-like domain
Probab=87.97 E-value=1.4 Score=49.59 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
+.+++++|.||||||+.+. .++..+.. .|..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999997655 45444443 2567778877655443
No 421
>PRK13764 ATPase; Provisional
Probab=87.92 E-value=0.98 Score=55.41 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..+|++|+||||||+. +..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456799999999999974 455666654
No 422
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.84 E-value=2.6 Score=52.40 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
..+|+.|+.|+|||.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 457899999999998655433
No 423
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.69 E-value=0.58 Score=50.27 Aligned_cols=40 Identities=10% Similarity=0.275 Sum_probs=23.8
Q ss_pred eEEEeccchhhh-c----CCCchhHHHHHHhcC-CCCcEEEEeccc
Q 001262 619 TYLVMDEADRMF-D----MGFEPQITRIVQNIR-PDRQTVLFSATF 658 (1112)
Q Consensus 619 ~~vViDEah~~~-~----~~f~~~i~~il~~~~-~~~q~il~SAT~ 658 (1112)
-+|||||+|.+. . ..+...+..++.... .....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999988 2 224445555555532 233455666665
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.53 E-value=2.2 Score=50.97 Aligned_cols=37 Identities=16% Similarity=0.014 Sum_probs=22.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+|+.|++|+|||...+-.+++.... .|..+++++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-------~g~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-------EGKPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCeEEEEe
Confidence 4456777999999996444333333322 244566665
No 425
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.44 E-value=6 Score=41.97 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+.+.|++|+|||...+..+...+. .+..++++.-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--------~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--------QGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC
Confidence 3456888899999999865544444322 2455666665
No 426
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=1.7 Score=49.35 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHH
Q 001262 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+++++.||.|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 427
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=5 Score=47.35 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHCCCCCChH----HHHHHHHHHHcC--------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001262 471 QTGLTSKIMETIRKLNYEKPMP----IQAQALPVIMSG--------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 471 ~~~l~~~l~~~l~~~~~~~pt~----iQ~~ai~~il~g--------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
.+|.++..++.+...|+..-.| +-..+.-.+.+- ..+|+.||.|||||..+.-.++. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------S 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------c
Confidence 3667776666666555443322 222222222211 35899999999999754443331 2
Q ss_pred CCCcEEEEccc
Q 001262 539 DGPVGLIMAPT 549 (1112)
Q Consensus 539 ~~~~~LIl~Pt 549 (1112)
.-|.+=|+.|.
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 45777888883
No 428
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.34 E-value=1.6 Score=51.37 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.+|+.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999753
No 429
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=87.30 E-value=0.42 Score=63.67 Aligned_cols=93 Identities=34% Similarity=0.452 Sum_probs=74.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhcC-CCeeeecCCCC-----------HHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001262 717 ILIFVHSQEKCDALFRDLLKHG-YPCLSLHGAKD-----------QTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~~-~~~~~ihg~~~-----------~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
.||||+....+..++..+.... +.+..+.|.+. +..+..++..|....+.+|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4789998888888887776642 23333444332 23367888999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHccccCCC
Q 001262 785 LVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 785 ~VI~~~~p~s~~~y~QriGR~gR~G 809 (1112)
.|+.++.|.....|+|..||+-..+
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999987653
No 430
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=1.9 Score=50.28 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=52.4
Q ss_pred cCCceEEEeccchhhhcCC------------CchhHHHHHHhcCCCCcEEEEeccc-cHHHHHHHHHhcCCCeEEEecCc
Q 001262 615 LRRVTYLVMDEADRMFDMG------------FEPQITRIVQNIRPDRQTVLFSATF-PRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~------------f~~~i~~il~~~~~~~q~il~SAT~-~~~~~~l~~~~l~~p~~i~~~~~ 681 (1112)
....++|+|||+|.++..- -...+..+.....++-++++++||- |..+..-+...+..-++
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~y------ 316 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLY------ 316 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceee------
Confidence 3457889999999887421 1122333333445566899999994 44454444443332221
Q ss_pred cccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHH
Q 001262 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L 734 (1112)
+...+...+...+..+|... + .|-+......|+...
T Consensus 317 ----------iplPd~etr~~~~~~ll~~~---~----~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 317 ----------IPLPDYETRSLLWKQLLKEQ---P----NGLSDLDISLLAKVT 352 (428)
T ss_pred ----------ecCCCHHHHHHHHHHHHHhC---C----CCccHHHHHHHHHHh
Confidence 22344455666666666653 1 233445555555544
No 431
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.21 E-value=8.7 Score=45.95 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh
Q 001262 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~ 588 (1112)
-+++||+..-++.+.+.+.. +-.|-+||.+-+.+-|.|++.++. .+-++.+..++|..+..+. +..+.
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 35778888877777776654 356888999999999999988876 2357888899998654433 44555
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001262 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 589 ~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.| ..|+|||. +|.++ .+|..+.+||.+..-
T Consensus 436 ~g~IwvLicTd-----ll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICTD-----LLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEehh-----hhhcc----ccccCcceEEecCCC
Confidence 44 58999993 45443 689999999986654
No 432
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=3 Score=49.97 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=32.1
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001262 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|--..+...|.. ..+..|--++.-.|. .-..+|++||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 45789998866666554442 222222222222221 2456999999999999853
No 433
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=3.3 Score=48.26 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+..+.|+|.+|+|||.+
T Consensus 174 t~gSlYVsG~PGtgkt~~ 191 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTAL 191 (529)
T ss_pred cCcceEeeCCCCcchHHH
Confidence 346799999999999975
No 434
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.04 E-value=2 Score=53.62 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.||+++-|.+++..|... ++.++.+||+.+...+...+ . ....|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 358999999999999988776653 68899999998876554443 2 3578999994 3333 478889
Q ss_pred CcEEEE
Q 001262 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 998884
No 435
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.01 E-value=2.8 Score=43.75 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=23.1
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|||||+|+|.... ...+...+...++. -+++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~-~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPN-TLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCC-eEEEEEEC
Confidence 4567899999999985421 23344444443333 33444444
No 436
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=86.95 E-value=0.98 Score=53.72 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=31.1
Q ss_pred EeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001262 595 VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 595 V~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
|-+||-..++-... ..+..-.+.|+|||-.-++.+.+..+.+++....
T Consensus 570 vLS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 570 VLSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred hcCHHHHHHHHHHH----HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 44566544433221 2345678999999998777777777777776653
No 437
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.68 E-value=0.55 Score=50.26 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=29.0
Q ss_pred cccccccCCCCHHHHHH-HHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001262 465 PIKTWHQTGLTSKIMET-IRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~-l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|-+|.+++||+.+.+. +.+.| -+|++|+|||||++. +..|+.+
T Consensus 106 ~IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhh-HHHHhcc
Confidence 34577888888766553 12222 377889999999975 4455544
No 438
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.66 E-value=3.9 Score=44.13 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=29.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-+++.|++|+|||+.++..+...+.. +..+++++- -+.+.++...+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHH
Confidence 35678889999999997555444443321 345666653 333444444433
No 439
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.64 E-value=2.9 Score=47.91 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++|+|...|..+. +|+ -+|+.||.|+||+..+... ...+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~-A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL-SRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH-HHHHcC
Confidence 4566666666554 443 5788999999999754443 334443
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.57 E-value=2.9 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.7
Q ss_pred HHHHHHcC---CCEEEEcCCCChHHHH
Q 001262 497 ALPVIMSG---RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 497 ai~~il~g---~dvii~a~TGsGKT~~ 520 (1112)
.++.+... ++++++|++|||||+.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 34555533 5789999999999973
No 441
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=5.9 Score=45.06 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++|=-|+|||++..-.++++ . ..|.+++++| ..|+-|. ..++..+...++.+...|.......
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~-k-------kkG~K~~LvcaDTFRagAf---DQLkqnA~k~~iP~ygsyte~dpv~-- 170 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYY-K-------KKGYKVALVCADTFRAGAF---DQLKQNATKARVPFYGSYTEADPVK-- 170 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHH-H-------hcCCceeEEeecccccchH---HHHHHHhHhhCCeeEecccccchHH--
Confidence 6667999999998755555544 2 2366666666 3344333 4455544445555443332221111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001262 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
|+.-| ++- +.-.++++||+|=.-|.-. .+....+..+...+.|+.-++++-|++....+
T Consensus 171 ----------ia~eg--v~~--------fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 171 ----------IASEG--VDR--------FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred ----------HHHHH--HHH--------HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 11111 011 1223466777776665432 22445677788888999888899999887777
Q ss_pred HHHHHhc
Q 001262 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~l 670 (1112)
..++.|-
T Consensus 231 ~Qa~aFk 237 (483)
T KOG0780|consen 231 AQARAFK 237 (483)
T ss_pred HHHHHHH
Confidence 7766654
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.44 E-value=1.7 Score=55.76 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=31.5
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001262 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..+|.+.+....+...|... .+..|.-++... +...+.+|+.||+|+|||+.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788887777776665531 121111111110 112356899999999999743
No 443
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=2 Score=49.36 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=17.0
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001262 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
+...++|+.||||||||+.+.
T Consensus 224 LeKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred eecccEEEECCCCCchhHHHH
Confidence 455689999999999997443
No 444
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.28 E-value=3.6 Score=53.38 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.2
Q ss_pred CCEEEEcCCCChHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp 524 (1112)
.++|++|++|+|||...-..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 58999999999999765433
No 445
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.24 E-value=2.5 Score=48.00 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHH
Q 001262 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~ll 523 (1112)
++|+|...+..+. .++ -+|+.|+.|.||+..+..
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4566666666554 443 588899999999965443
No 446
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.21 E-value=0.93 Score=49.01 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.1
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++|.|..|||||.. +.-++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47889999999974 44444
No 447
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.20 E-value=0.59 Score=48.24 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001262 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
....+...++|||+++..|++-.......... ..-.+|||||||.|.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHH
Confidence 34555567899999999887654332111112 3457999999999865
No 448
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.18 E-value=1.5 Score=49.75 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|+-++|.|++|||||+.++..+. .... .+..|+++..-..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~-~~~~-------~g~~v~yId~E~~~ 95 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA-EAQK-------AGGTAAFIDAEHAL 95 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCcEEEEcccchh
Confidence 346688889999999975444444 3332 25567777554433
No 449
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.15 E-value=2.9 Score=50.75 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=25.5
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||+|.... ...+.+++...++...+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4568899999999886432 334555566555555555544
No 450
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=86.12 E-value=1.3 Score=36.59 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.6
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q 001262 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAEL 1086 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i 1086 (1112)
.++.++.+|.+.|||.|.+... + ..-.+.|.| +...|+.|+..|
T Consensus 17 ~~G~~i~~I~~~t~~~I~i~~~----------~-~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 17 KKGSNIKEIEEETGVKIQIPDD----------D-ERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp GGGHHHHHHHHHHTSEEEEEST----------T-EEEEEEEEE-SHHHHHHHHHHH
T ss_pred CCCCcHHHhhhhcCeEEEEcCC----------C-CcEEEEEEe-CHHHHHHHHhhC
Confidence 4678999999999999998332 2 445889999 999999999876
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=85.95 E-value=3.6 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=28.1
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+.+-.++|+||.-.-+|......+..++..+. .+|+++..-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~ 126 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHD 126 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECC
Confidence 34567999999998777766667777776652 355555443
No 452
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=85.87 E-value=0.86 Score=55.12 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+++++|+||||||..|++|.+.. . ..-++|+=|--+|+......+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r 90 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYR 90 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHH
Confidence 479999999999999999998732 1 114567778888876544433
No 453
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.85 E-value=3.6 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++|++|++|+|||..+-..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999986544433
No 454
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.84 E-value=1.4 Score=46.13 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHH-cCCCEEEEcCCCChHHHH
Q 001262 489 KPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~ 520 (1112)
..++-|...+...+ .|..++++|+||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34566777776655 577889999999999974
No 455
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.81 E-value=4.3 Score=42.72 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v 783 (1112)
+.++||+|++..-+..+...+... ++.+..++|+.+.......+. +...|+|+|.- +. .-++++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 458999999999988887766554 678889999998766544332 56789999942 22 22567778
Q ss_pred cEEEE
Q 001262 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88774
No 456
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.69 E-value=3.4 Score=49.94 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=63.5
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-ccc------cC-CCCCCc
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-AAR------GL-DVKELE 784 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~~~------Gl-Di~~v~ 784 (1112)
..+.+||++|+++-+......|...|+.+..++|+.+..++..++..+..|..+||++|+- +.. .+ ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 3678999999999999999999999999999999999999999999999999999999952 221 22 456777
Q ss_pred EEEE
Q 001262 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 7775
No 457
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=85.67 E-value=11 Score=47.17 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcC--------CccEEEecCcccccCC
Q 001262 715 GKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSN--------VCNLLIATSVAARGLD 779 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~R~~~~~~F~~g--------~~~VLVaT~v~~~GlD 779 (1112)
..+|||+++....+.+...+... ++.-+ +..-.+...-..++..|.++ ..-+.||-.-+++|||
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 34999999999888886555442 22222 22222444455666666543 3346677889999999
Q ss_pred CCC--CcEEEEeCCCCC--------------------------------------HHHHHHHHccccCCCCccEEEEEec
Q 001262 780 VKE--LELVINFDAPNH--------------------------------------YEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 780 i~~--v~~VI~~~~p~s--------------------------------------~~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
+.+ ...||..++|.- .-...|.+||+-|.-+.=.+++|++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 976 678898888641 1123588899999766544555665
Q ss_pred C
Q 001262 820 E 820 (1112)
Q Consensus 820 ~ 820 (1112)
.
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
No 458
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.61 E-value=7.2 Score=44.30 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=23.8
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 3579999999987542 2334555666655555555544
No 459
>PHA00012 I assembly protein
Probab=85.44 E-value=7.3 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhc
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++.|..|||||+.++..++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5788999999999888777766554
No 460
>PRK07413 hypothetical protein; Validated
Probab=85.40 E-value=1.7 Score=50.10 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred cCHHHHHHHHhhcC----ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCCh
Q 001262 441 MTPEEVSAYRKQLE----LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSG 516 (1112)
Q Consensus 441 ~~~~~~~~~r~~~~----~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsG 516 (1112)
++.+++-.+.+... +-++|.+.|..+..+.++-.--...+.-...|...|+..+-. +.|.--.|=|
T Consensus 143 l~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~----------i~VYTG~GKG 212 (382)
T PRK07413 143 LPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHRRPTASELGVPFNSSGG----------IEIYTGEGKG 212 (382)
T ss_pred ccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeEEeceecCCCcCCCCcccCCCCe----------EEEEeCCCCC
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCC------cEEEEccchhHHHHHHHHHHHHhhhcCce-EEEEeCCCChHHHHHHHhc
Q 001262 517 KTLAFVLPMLRHIKDQPPVAAGDGP------VGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKR 589 (1112)
Q Consensus 517 KT~~~llp~l~~l~~~~~~~~~~~~------~~LIl~PtreLa~Q~~~~~~~~~~~~~i~-~~~~~gg~~~~~~~~~l~~ 589 (1112)
||++++--+++. .+.|. +|+|+-=.+.-...=...+-..+...--. +.....|........ .
T Consensus 213 KTTAAlGlAlRA--------~G~G~~~~~~~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~~~~~~~---~ 281 (382)
T PRK07413 213 KSTSALGKALQA--------IGRGISQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRG---Q 281 (382)
T ss_pred chHHHHHHHHHH--------hcCCCCcccCceEEEEEECCCCCChHHHHHHHHhhhhCCCcEEEEEccCCCceeec---C
Q ss_pred CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCch--hHHHHHHhcCCCCcEEEEecc-ccHHHHHHH
Q 001262 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSAT-FPRQVEILA 666 (1112)
Q Consensus 590 g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~--~i~~il~~~~~~~q~il~SAT-~~~~~~~l~ 666 (1112)
...+-+......+...... ..-..+++|||||+-..++.++.+ .+..++...++...+|++.-. .|+.+..++
T Consensus 282 ~~~~~~~~a~~~~~~a~~~----i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~A 357 (382)
T PRK07413 282 QQPIDYVEAERAWEIARAA----IASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLA 357 (382)
T ss_pred ChHHHHHHHHHHHHHHHHH----HhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhC
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.35 E-value=2.6 Score=51.92 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.++|+||+---+|......+...+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45677899999988777766777777776665555444443
No 462
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=85.33 E-value=7.9 Score=41.89 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHcCC-CEEEEcCCCChHHHHHH
Q 001262 499 PVIMSGR-DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 499 ~~il~g~-dvii~a~TGsGKT~~~l 522 (1112)
+.+..|+ -+.++|+.|||||+..=
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH
Confidence 3445566 67778999999998654
No 463
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.32 E-value=1.6 Score=50.06 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001262 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997544
No 464
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.25 E-value=3.2 Score=50.12 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.8
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|+.||.|+|||+++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997655443
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.18 E-value=4.3 Score=49.26 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=38.8
Q ss_pred HHHHHHHc-----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 496 QALPVIMS-----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 496 ~ai~~il~-----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+..++. |.-+++.|++|+|||+..+..+...+. +|..||+++ +-+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 44555554 456888899999999865555544432 356778876 455567777776664
No 466
>PRK05973 replicative DNA helicase; Provisional
Probab=85.14 E-value=1.4 Score=47.76 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001262 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||.. +.+.-+..|.-++|.|++|+|||+..+..+...+. +|..++|++- -+-..|+...+..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 455522 23334445667888899999999865555554432 2556777763 22245555555554
No 467
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.96 E-value=1.3 Score=56.86 Aligned_cols=96 Identities=23% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 001262 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~ 793 (1112)
..++|||+.-....+.+...+...++.+...-++- +-...+..|++ .-.+||-+...+-|||+-++.+|+..++-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 35899999999888888888887777765554433 34556777766 344667888899999999999999999999
Q ss_pred CHHHHHHHHccccCCCCccE
Q 001262 794 HYEDYVHRVGRTGRAGRKGC 813 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~ 813 (1112)
++.+-.|.+||+.|.|++--
T Consensus 1297 N~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred CchHHHhhhhhhhhcccccc
Confidence 99999999999999997643
No 468
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=2.4 Score=49.85 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=29.9
Q ss_pred CcccccccCC---CCHHHHHHHHHCCCCCChH---HHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001262 464 KPIKTWHQTG---LTSKIMETIRKLNYEKPMP---IQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~---l~~~l~~~l~~~~~~~pt~---iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|--.|.++| |..++.+.+...-....+| +-+-.|+ .=+.+|+.||.|+|||+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 4555677764 5566665554321111111 1111111 2257899999999999854
No 469
>PRK09354 recA recombinase A; Provisional
Probab=84.84 E-value=2.5 Score=48.39 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|+-+.|.|++|||||+..+..+.... . .|..|++|..--.+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~-~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEECCccchH
Confidence 45678889999999976554444432 2 256778887655444
No 470
>PRK14701 reverse gyrase; Provisional
Probab=84.82 E-value=4 Score=56.17 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=53.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.++||.+||+.-+.+++..|... ++.+..+||+++..++..++..+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999998888763 467789999999999999999999999999999963
No 471
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=84.77 E-value=3.8 Score=53.08 Aligned_cols=90 Identities=9% Similarity=0.170 Sum_probs=71.0
Q ss_pred hhHHHHHHHH-hhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-C
Q 001262 699 DRFLRLLELL-GEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-S 772 (1112)
Q Consensus 699 ~k~~~ll~~l-~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~ 772 (1112)
.|....+... .....+.+|.|.|||.--|++-+..|.. .++++..+.--.+..+...+++..++|.++|||.| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 3444333333 2333456899999998777776666655 47778899999999999999999999999999999 5
Q ss_pred cccccCCCCCCcEEEE
Q 001262 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
+++.+|-+.++-+||+
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 7788999999999986
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.76 E-value=2.2 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=19.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..++++||||||||+. +..++.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhC
Confidence 345688999999999975 344555543
No 473
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.75 E-value=6.4 Score=49.05 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=25.7
Q ss_pred ccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001262 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+....+|||||+|.|.... ...+..++...+.. -+++|.+|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~-tifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSY-AIFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCC-eEEEEEeCC
Confidence 44568899999999985422 23445555554333 345555553
No 474
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.74 E-value=3.6 Score=52.72 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.++.+|+.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457799999999999964
No 475
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=84.74 E-value=3.1 Score=46.55 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001262 722 HSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
.|...++.|+..|. .++.|...|=++.
T Consensus 258 RSV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 258 RSVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred cHHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 35778899999994 6899999998775
No 476
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.64 E-value=0.69 Score=50.98 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=16.8
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001262 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
++..+++++||||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 455689999999999997443
No 477
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.60 E-value=1.3 Score=50.20 Aligned_cols=56 Identities=27% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCChHHHHH-HHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001262 488 EKPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 488 ~~pt~iQ~~-ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
..+++.|.. .|-++..+++++++|+||||||.. +.+++..+-. ..+++.+=-|.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 345566554 455666889999999999999964 5555544321 2244555555555
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.53 E-value=2.4 Score=48.15 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
|+-+.+.||.|||||+.++..+... .. .+..++++.+--.+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~-~~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA-QK-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCCEEEECccccHHH
Confidence 4668888999999997544444433 32 2567888876554443
No 479
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=84.49 E-value=0.76 Score=54.04 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=31.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+++++|+||||||.++++|.+.. . +..++|+=|--+|.....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~ 42 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTS 42 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHH
Confidence 47899999999999999887643 1 234677778888876443
No 480
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=84.45 E-value=2.4 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHc-C-CCEEEEcCCCChHHHHHHHHHHHHH
Q 001262 492 PIQAQALPVIMS-G-RDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 492 ~iQ~~ai~~il~-g-~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+.|.+.|-.++. . .-++++|+||||||+. +..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445555544443 3 3578889999999974 44455554
No 481
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.45 E-value=3.2 Score=51.00 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
-+|+.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865543
No 482
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=84.44 E-value=3.5 Score=49.12 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=22.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001262 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|++|+|||...+-.+.+.... .+..++|++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-------~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-------EGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 34556777999999996444333333222 244566666
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.44 E-value=0.36 Score=49.53 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=52.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
.+++.|+.|+|||+. +.-++..+.... -+.+=|++| .++ -....|+.++.+..|.... +
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~------~~v~Gf~t~evr~-----------~g~r~GF~iv~l~~g~~~~--l 60 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKG------LPVGGFYTEEVRE-----------NGRRIGFDIVDLNSGEEAI--L 60 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTC------GGEEEEEEEEEET-----------TSSEEEEEEEET-TS-EEE--E
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccC------CccceEEeecccC-----------CCceEEEEEEECcCCCccc--c
Confidence 378999999999975 455666665421 122234443 221 1112244444432221000 0
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccc--cCCceEEEeccchhhh--cCCCchhHHHHHH
Q 001262 585 SELKRGTEIVVCTPGRMIDILCTSGGKITN--LRRVTYLVMDEADRMF--DMGFEPQITRIVQ 643 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~--l~~i~~vViDEah~~~--~~~f~~~i~~il~ 643 (1112)
........+-++.+....+.+..-...... +...++|||||+=.|- ..+|...+..++.
T Consensus 61 a~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 61 ARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp EETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred ccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 000011234444444444444332222222 2567899999999763 3446666666665
No 484
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=84.35 E-value=21 Score=40.84 Aligned_cols=232 Identities=13% Similarity=0.156 Sum_probs=113.5
Q ss_pred CEEEEc---CCCChHHHHHHHHHHHHHhcCCC----CCCCCCC----cEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001262 506 DCIGVA---KTGSGKTLAFVLPMLRHIKDQPP----VAAGDGP----VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a---~TGsGKT~~~llp~l~~l~~~~~----~~~~~~~----~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-||.+| -=|+|||- +++.++..+..+.- +..|+|. ..+++.+.. -+.++-.+---++..++ +..+
T Consensus 36 pVIsVGNltvGGTGKTP-~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~ 111 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTP-LVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVI 111 (326)
T ss_pred cEEEEcccccCCCCchH-HHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEE
Confidence 466665 34999995 46666666665411 1223321 255666655 66666666666666666 2223
Q ss_pred eCCCChHHHHHHHhc--CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchh--HHHHHHhcCCCCc
Q 001262 575 YGGSGVAQQISELKR--GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ--ITRIVQNIRPDRQ 650 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~--g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~--i~~il~~~~~~~q 650 (1112)
+| .....-+..+.. +++|||+-.|.=. ..--.++++|++|-.+-+.+-...+. +..-+..+. ..-
T Consensus 112 V~-~dR~~~~~~~~~~~~~dviilDDGfQh---------~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~-rAD 180 (326)
T PF02606_consen 112 VG-PDRVAAARAALKEFPADVIILDDGFQH---------RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALK-RAD 180 (326)
T ss_pred Ee-CcHHHHHHHHHHHCCCCEEEEcCCccc---------ccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhC-ccc
Confidence 33 333333333322 4899998776211 11235788999997554332111110 111111221 123
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHH
Q 001262 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l 730 (1112)
+|+++.................|+....-.. ..+ .... ... .....+.++++|| ....-+.+
T Consensus 181 ~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~---~~~~-~~~---------~~~l~~~~v~a~s-GIg~P~~F 242 (326)
T PF02606_consen 181 AVIVTGCDASDPAIEKAIRPGKPIFSARLKP----EGL---RNLN-TGS---------IEPLKGKPVLAFS-GIGNPERF 242 (326)
T ss_pred EEEEcCCCcchhHHHHhhhcCCceEEEEEEe----ccc---cccc-ccc---------hhhccCCeeEEEE-EcCChHHH
Confidence 4555544332222111111233332110000 000 0000 000 0012345677776 56666677
Q ss_pred HHHHHhcCCCee-----eecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 731 FRDLLKHGYPCL-----SLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 731 ~~~L~~~~~~~~-----~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
...|...|+.+. .=|-..+..+-..+...++... +||+|.
T Consensus 243 ~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 243 FDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 777888777654 3366788888888877776544 889993
No 485
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.21 E-value=17 Score=38.31 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=70.6
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHHHHHHHHHhhhc---CceEEEE-eCCC
Q 001262 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQIHSDIRKFAKVM---GVRCVPV-YGGS 578 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~~~~~~~~~~~~---~i~~~~~-~gg~ 578 (1112)
=+++-|+.|+|||+.-...++-.+. ++..+.+++ |+++...|+...=-.+...+ .+.++.+ ..+.
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~--------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLM--------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh--------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 4777899999999754444443332 355667776 66666666543211111111 1111111 0111
Q ss_pred ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc---CCCCcEEEEe
Q 001262 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI---RPDRQTVLFS 655 (1112)
Q Consensus 579 ~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~---~~~~q~il~S 655 (1112)
..... +-..+++.+... ....+-++||||=...+.-..-...+..++..+ -..-.+|++|
T Consensus 102 ~~~~~-------------~~~~~L~~l~~~----~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilT 164 (235)
T COG2874 102 NWGRR-------------SARKLLDLLLEF----IKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILT 164 (235)
T ss_pred ccChH-------------HHHHHHHHHHhh----HHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11100 011233333221 224567799999988665433233444444433 3456799999
Q ss_pred ccc---cHHHHHHHHHhcCCCe
Q 001262 656 ATF---PRQVEILARKVLNKPV 674 (1112)
Q Consensus 656 AT~---~~~~~~l~~~~l~~p~ 674 (1112)
+.+ +..+...++..+.-.+
T Consensus 165 vhp~~l~e~~~~rirs~~d~~l 186 (235)
T COG2874 165 VHPSALDEDVLTRIRSACDVYL 186 (235)
T ss_pred eChhhcCHHHHHHHHHhhheeE
Confidence 874 3444444444444333
No 486
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.10 E-value=3.7 Score=51.42 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=18.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001262 1068 YLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1068 yl~ie~~~~~~v~~a~~~i~~~~~e~~ 1094 (1112)
|+||-+.|..-...|+...+.+..+..
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (725)
T PRK07133 663 PKHIFAISKKLINEAKIYWKAINNTKK 689 (725)
T ss_pred cceEeeccHHHHHHHHHHHHHHHhhcc
Confidence 455666777777888887777766554
No 487
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.96 E-value=2 Score=50.60 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001262 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
...++|++||||+|||+.+-
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 34679999999999997543
No 488
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.81 E-value=4.6 Score=50.41 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=62.8
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc------ccCCCCCCcEE
Q 001262 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA------RGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~------~GlDi~~v~~V 786 (1112)
..+.+||++|+..-+......|...|+.+..+||+++..++..++..+..|..+||++|+--- .-+....+.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 367899999999999988899999999999999999999999999999999999999884221 22344567777
Q ss_pred EE
Q 001262 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 132 Vi 133 (591)
T TIGR01389 132 AV 133 (591)
T ss_pred EE
Confidence 64
No 489
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=83.76 E-value=18 Score=41.47 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l 529 (1112)
+-++|+.|+|||+ |+-.++..+
T Consensus 59 igi~G~~GaGKST-l~~~l~~~l 80 (332)
T PRK09435 59 IGITGVPGVGKST-FIEALGMHL 80 (332)
T ss_pred EEEECCCCCCHHH-HHHHHHHHH
Confidence 5556999999996 343444443
No 490
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=83.74 E-value=4.9 Score=44.67 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=42.3
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC--CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 493 IQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV--AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 493 iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~--~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|-+.|+-++ .|..+|+.|+.|.|||+..+...+.....+.-+ ...+..++|||.--- --..+...++.++..+++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl-~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL-YREDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc-ChHHHHHHHHHHHHHcCC
Confidence 3445555444 566677889999999987665544433222111 111233556665211 113344667777777766
Q ss_pred e
Q 001262 570 R 570 (1112)
Q Consensus 570 ~ 570 (1112)
.
T Consensus 156 s 156 (402)
T COG3598 156 S 156 (402)
T ss_pred C
Confidence 4
No 491
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.68 E-value=6.6 Score=47.10 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=15.6
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001262 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.||.|+|||.++.+.+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999998655443
No 492
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=83.60 E-value=1.9 Score=50.75 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=47.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001262 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
-.|||.+|++-|..+++.|... ++.+..|.|||....+++++.. ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3799999999999999998764 8999999999999999998876 678999994
No 493
>PRK10436 hypothetical protein; Provisional
Probab=83.52 E-value=1.9 Score=51.62 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001262 492 PIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 492 ~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+.|.+.|..++ .+.-+|++||||||||+.. ..++.++
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 44455554444 3345778899999999853 4556554
No 494
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=83.48 E-value=2.3 Score=35.53 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=35.7
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001262 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~ 1087 (1112)
..+.++.+|++.|||.|.+ +. .| .+.|.|++...|+.|+..|.
T Consensus 19 kgG~~ik~I~~~tg~~I~i-----~~-----~g----~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 19 PGGKTIKKIIEETGVKIDI-----ED-----DG----TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred CCchHHHHHHHHHCCEEEe-----CC-----CC----EEEEEeCCHHHHHHHHHHhC
Confidence 4689999999999999975 22 12 49999999999999999873
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.35 E-value=4.6 Score=41.68 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001262 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+-.++|+||.-.-+|......+..++..+... .+|+++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888877677777777776543 35555444
No 496
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=83.32 E-value=6.9 Score=42.30 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHH-----------------HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001262 507 CIGVAKTGSGKTLAF-----------------VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 507 vii~a~TGsGKT~~~-----------------llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+||.|-.|+|||+|. ++|-+..+.. .........-+.|=+-+++...++...+..+-...++
T Consensus 4 vIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~-~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~ 82 (286)
T COG1660 4 VIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML-TLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDI 82 (286)
T ss_pred EEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh-hcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCC
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEE-EeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001262 570 RCVPVYGGSGVAQQISELKRGTEIV-VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~g~~Ii-V~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
.+-.++-.++....+......-..- ++..++|++.+......+..|....=+|||=-+.-...--......+.......
T Consensus 83 ~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~~~~~~ 162 (286)
T COG1660 83 DPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLGKEERT 162 (286)
T ss_pred CceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHccCCCcc
Q ss_pred CcEEEEeccccHHHHHHHH-----HhcCCC-eEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh------cCCe
Q 001262 649 RQTVLFSATFPRQVEILAR-----KVLNKP-VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY------EKGK 716 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~-----~~l~~p-~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~------~~~~ 716 (1112)
..++++|--|...+..-+. .|+.|| ..-.+....-....+..++.-.+....|..-+.-+.... .+..
T Consensus 163 ~~v~v~SFGFKyGiP~DADlVFDVRfLPNP~y~peLRp~tG~d~~V~dYv~~~~e~~ef~~~l~~~l~~~LP~y~~egks 242 (286)
T COG1660 163 LTVTVESFGFKYGIPIDADLVFDVRFLPNPHYDPELRPLTGLDKPVADYVMSQPEVEEFYEKLRDLLEFWLPRYEKEGKS 242 (286)
T ss_pred eEEEEEecccccCCCCCcceEEEecccCCCccccccCcCCCCChhHHHHHHcChHHHHHHHHHHHHHHHHhHHHHhcCCe
Q ss_pred EEEEe--------CCHHHHHHHHHHHHhcCC-CeeeecCCC
Q 001262 717 ILIFV--------HSQEKCDALFRDLLKHGY-PCLSLHGAK 748 (1112)
Q Consensus 717 vLIF~--------~s~~~~~~l~~~L~~~~~-~~~~ihg~~ 748 (1112)
.|... .|..-++.|+.+|+..+. .+...|-++
T Consensus 243 ~lTIaIGCTGGqHRSV~iae~La~~l~~~~~~~v~v~HRd~ 283 (286)
T COG1660 243 YLTIAIGCTGGQHRSVYIAEQLAEYLRARGKYNVQVRHRDL 283 (286)
T ss_pred EEEEEEccCCCccchHHHHHHHHHHHHhccCceEEEeehhh
No 497
>PRK07413 hypothetical protein; Validated
Probab=83.21 E-value=8.8 Score=44.37 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC------cEEEEccchh--HHHHHHHHHHHHhhhcCceEEEEeCCC
Q 001262 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP------VGLIMAPTRE--LVQQIHSDIRKFAKVMGVRCVPVYGGS 578 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~------~~LIl~Ptre--La~Q~~~~~~~~~~~~~i~~~~~~gg~ 578 (1112)
+.|.--.|=|||++++--+++. .+.|. +|+|+-=.+- -..-=...+..+...++..+.....|.
T Consensus 22 i~VytG~GKGKTTAAlGlalRA--------~G~G~~~~~~~rV~ivQFlKg~~~~~GE~~~l~~l~~~~~~~i~~~~~g~ 93 (382)
T PRK07413 22 LHVYDGEGKGKSQAALGVVLRT--------IGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGR 93 (382)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH--------hcCCCCcCCCCeEEEEEEEcCCCCCCcHHHHHHhccccCCCceEEEECCC
Q ss_pred ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC--CchhHHHHHHhcCCCCcEEEEec
Q 001262 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 579 ~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~--f~~~i~~il~~~~~~~q~il~SA 656 (1112)
...-... .....-.......+...... ..-..+++|||||+-..++.| -...+..++...++...+|++.-
T Consensus 94 ~~~~~~~---~~~~~~~~~a~~~~~~a~~~----i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR 166 (382)
T PRK07413 94 AEFFGAD---EITKFDRQEAQRGWDIAKGA----IASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGR 166 (382)
T ss_pred CCeeeCC---CCcHHHHHHHHHHHHHHHHH----HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCC
Q ss_pred cccHHHHHHHH-----HhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCC-------eEEEE
Q 001262 657 TFPRQVEILAR-----KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG-------KILIF 720 (1112)
Q Consensus 657 T~~~~~~~l~~-----~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~-------~vLIF 720 (1112)
.+|+.+..++. ....+|...-++.....+..|. ++.-+-..|....+-+.......| +|+|+
T Consensus 167 ~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~i~--VYTG~GKGKTTAAlGlAlRA~G~G~~~~~~~rV~iv 240 (382)
T PRK07413 167 AAPQSLLDIADLHSEMRPHRRPTASELGVPFNSSGGIE--IYTGEGKGKSTSALGKALQAIGRGISQDKSHRVLIL 240 (382)
T ss_pred CCCHHHHHhCCeeEEeceecCCCcCCCCcccCCCCeEE--EEeCCCCCchHHHHHHHHHHhcCCCCcccCceEEEE
No 498
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=82.94 E-value=2.6 Score=46.55 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHHHHHHHH
Q 001262 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQIHSDIRK 562 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~~~~~~~ 562 (1112)
|+.+-.+.=-..+.-+..|.=+++.|.+|.|||..++-.+++.+... +..|++++ |..+++..+
T Consensus 1 Gi~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~------ 67 (259)
T PF03796_consen 1 GIPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARL------ 67 (259)
T ss_dssp SB-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHH------
T ss_pred CCCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHH------
Q ss_pred HhhhcCceEEEEeCCCChHHHHHH-------HhcCCeEEEeCchHHHHHHHhcCCCcccc-CCceEEEeccchhhhcC--
Q 001262 563 FAKVMGVRCVPVYGGSGVAQQISE-------LKRGTEIVVCTPGRMIDILCTSGGKITNL-RRVTYLVMDEADRMFDM-- 632 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~-------l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l-~~i~~vViDEah~~~~~-- 632 (1112)
++...++....+..|......... +....-++..+|..=++.+...-.....- ..+.+||||=.|.|-..
T Consensus 68 la~~s~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~ 147 (259)
T PF03796_consen 68 LARLSGVPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDS 147 (259)
T ss_dssp HHHHHTSTHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCS
T ss_pred HHHhhcchhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCC
Q ss_pred --CCchhHHHHHHhcCC-----CCcEEEEe
Q 001262 633 --GFEPQITRIVQNIRP-----DRQTVLFS 655 (1112)
Q Consensus 633 --~f~~~i~~il~~~~~-----~~q~il~S 655 (1112)
+....+..+...++. +..+|++|
T Consensus 148 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 148 SDNRRQEIGEISRELKALAKELNIPVIALS 177 (259)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCeEEEcc
No 499
>COG1485 Predicted ATPase [General function prediction only]
Probab=82.84 E-value=5.4 Score=45.11 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001262 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
.+.+.+.|+.|.||| +|+-++.+....... .-++.-.-+..+++.+..+- |-...-.-
T Consensus 65 ~~GlYl~GgVGrGKT--~LMD~Fy~~lp~~~k---------~R~HFh~FM~~vH~~l~~l~-----------g~~dpl~~ 122 (367)
T COG1485 65 VRGLYLWGGVGRGKT--MLMDLFYESLPGERK---------RRLHFHRFMARVHQRLHTLQ-----------GQTDPLPP 122 (367)
T ss_pred CceEEEECCCCccHH--HHHHHHHhhCCcccc---------ccccHHHHHHHHHHHHHHHc-----------CCCCccHH
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHH
Q 001262 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
+.. -.+.+..+|+|||.| +.|.+-...+.+++..+ .....+|.+|-|.|.++
T Consensus 123 iA~--------------------------~~~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 123 IAD--------------------------ELAAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHH--------------------------HHHhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
No 500
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.80 E-value=3.1 Score=50.91 Aligned_cols=236 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHcCCC----------EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001262 489 KPMPIQAQALPVIMSGRD----------CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d----------vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.++..|.++|-...+.++ .||-...|.||--...-.|+...+.. ..++|.+.-+..|-.....
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhh
Q ss_pred HHHHHhhh-cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH-hcCCCccccCCc---------eEEEeccch
Q 001262 559 DIRKFAKV-MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC-TSGGKITNLRRV---------TYLVMDEAD 627 (1112)
Q Consensus 559 ~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~-~~~~~~~~l~~i---------~~vViDEah 627 (1112)
.+..+... ..+....-+-+..+......-.+ -.||+||+-.|+-... .++...+-|..+ ++||+||||
T Consensus 337 DL~DigA~~I~V~alnK~KYakIss~en~n~k-rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 337 DLRDIGATGIAVHALNKFKYAKISSKENTNTK-RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred chhhcCCCCccceehhhcccccccccccCCcc-ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Q ss_pred hhhcCC---------CchhHHHHHHhcCCCCcEEEEecc---ccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEec
Q 001262 628 RMFDMG---------FEPQITRIVQNIRPDRQTVLFSAT---FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 628 ~~~~~~---------f~~~i~~il~~~~~~~q~il~SAT---~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~ 695 (1112)
+-.+.- -...+..+-..+ |+..+|.-||| =|+++..+.+..+-.+ .
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATGAsEPrNMaYM~RLGlWGe---------------------g 473 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATGASEPRNMAYMVRLGLWGE---------------------G 473 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccCCCCcchhhhhhhhccccC---------------------C
Q ss_pred ccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH
Q 001262 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~ 754 (1112)
..-.-|..++..+....-+.--||-+..+.....++..|.-.|+.+.+--=.|+.+-|.
T Consensus 474 taf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQLSFkgVsFrieEv~ls~eF~k 532 (1300)
T KOG1513|consen 474 TAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFRIEEVPLSKEFRK 532 (1300)
T ss_pred CcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhccccCceEEEEecccCHHHHH
Done!