BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001263
(1112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 933 LSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREH 992
L M +++H+K+T ++ + +S IHG G+F K AG+MVIEY G ++R D+RE
Sbjct: 37 LPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREK 96
Query: 993 FIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAK 1052
+ Y+S G G YMFRIDD V+DAT G+ A INHSCEPNCYSRVI+++G +HI+IFA
Sbjct: 97 Y-YDSK-GIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAM 154
Query: 1053 RDIKQWEELTYDYRFFSID--EQLACYCGFPRCRGVVN 1088
R I + EELTYDY+F D +L C CG +CR +N
Sbjct: 155 RKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATR 1018
G+GI K P +AG +IEY GE+V S + R I + Y +D VID+ R
Sbjct: 85 GWGIRTKEPLKAGQFIIEYLGEVV--SEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYR 142
Query: 1019 AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRF--FSIDEQLAC 1076
G+ A INHSC+PNC + SVNG I ++A +D+ ELTYDY F F++++Q C
Sbjct: 143 MGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLC 202
Query: 1077 YCGFPRCRGVV 1087
CGF +CRG++
Sbjct: 203 KCGFEKCRGII 213
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELV-----RPSIADRREHFIYNSLVGAGTYMFRIDDERV 1013
G+G+ K + G+ V EY GEL+ R I +EH I N YM +D +R+
Sbjct: 103 GWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITN------FYMLTLDKDRI 156
Query: 1014 IDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSI-DE 1072
IDA G+ A +NH C+PNC ++ SVNGD + +FA DIK ELT++Y + +
Sbjct: 157 IDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNG 216
Query: 1073 QLACYCGFPRCRGVV 1087
+ C CG P C G +
Sbjct: 217 KTVCKCGAPNCSGFL 231
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
3-9 Homolog 2
Length = 300
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 952 FGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRID-- 1009
F S G+G+ + V+EY GE++ A+RR F N + TY+F +D
Sbjct: 145 FRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGI---TYLFDLDYE 201
Query: 1010 -DERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDE------HIIIFAKRDIKQWEELT 1062
DE +DA R G+++H +NHSC+PN +V +V D I +F+ R I EELT
Sbjct: 202 SDEFTVDAARYGNVSHFVNHSCDPNL--QVFNVFIDNLDTRLPRIALFSTRTINAGEELT 259
Query: 1063 YDYRFF--------SIDEQLA-------CYCGFPRCRGVVN 1088
+DY+ SID A C CG CRG +N
Sbjct: 260 FDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELV-RPSIADRREHFIYNSLVGAGTYMFRIDDERVIDAT 1017
G+G+ A + V+EY GE++ R + + N + Y + ++ +IDAT
Sbjct: 128 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIH--YYFMALKNDEIIDAT 185
Query: 1018 RAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSI-DEQLAC 1076
+ G+ + +NHSCEPNC ++ +VNG + F + + ELT+DY+F E C
Sbjct: 186 QKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKC 245
Query: 1077 YCGFPRCRGVV 1087
+CG CRG +
Sbjct: 246 FCGSANCRGYL 256
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 942 MKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGA 1001
++ R RL ++ G+G+ + G V EY GEL+ S AD RE
Sbjct: 139 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--------- 189
Query: 1002 GTYMFRIDDE----RVIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIIIFAKR 1053
+Y+F +D++ IDA G+++ INH CEPN RV + D I F+ R
Sbjct: 190 DSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR 249
Query: 1054 DIKQWEELTYDY--RFFSIDEQL-ACYCGFPRCR 1084
I+ E+L +DY RF+ I +L +C CG P+CR
Sbjct: 250 LIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 283
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
Length = 287
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 942 MKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGA 1001
++ R RL ++ G+G+ + G V EY GEL+ S AD RE
Sbjct: 141 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--------- 191
Query: 1002 GTYMFRIDDE----RVIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIIIFAKR 1053
+Y+F +D++ IDA G+++ INH CEPN RV + D I F+ R
Sbjct: 192 DSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR 251
Query: 1054 DIKQWEELTYDY--RFFSIDEQL-ACYCGFPRCR 1084
I+ E+L +DY RF+ I +L +C CG P+CR
Sbjct: 252 LIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
Length = 261
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 942 MKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGA 1001
++ R RL ++ G+G+ + G V EY GEL+ S AD RE
Sbjct: 115 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--------- 165
Query: 1002 GTYMFRIDDE----RVIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIIIFAKR 1053
+Y+F +D++ IDA G+++ INH CEPN RV + D I F+ R
Sbjct: 166 DSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR 225
Query: 1054 DIKQWEELTYDY--RFFSIDEQL-ACYCGFPRCR 1084
I+ E+L +DY RF+ I +L +C CG P+CR
Sbjct: 226 LIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 259
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 938 KYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNS 997
K + ++ + RL ++ G+G+ A G + EY GEL+ + AD RE
Sbjct: 118 KNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED----- 172
Query: 998 LVGAGTYMFRIDDER----VIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIII 1049
+Y+F +D++ IDA G+I+ INH C+PN RV ++ D I
Sbjct: 173 ----DSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAF 228
Query: 1050 FAKRDIKQWEELTYDY--RFFSIDEQ-LACYCGFPRCR 1084
F+ RDI+ EEL +DY RF+ I + C CG +C+
Sbjct: 229 FSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)
Query: 938 KYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNS 997
K + ++ + RL ++ G+G+ A G + EY GEL+ + AD RE
Sbjct: 116 KNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED----- 170
Query: 998 LVGAGTYMFRIDDER----VIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIII 1049
+Y+F +D++ IDA G+I+ INH C+PN RV ++ D I
Sbjct: 171 ----DSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAF 226
Query: 1050 FAKRDIKQWEELTYDY--RFFSIDEQ-LACYCGFPRCR 1084
F+ RDI+ EEL +DY RF+ I + C CG +C+
Sbjct: 227 FSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 264
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFR---IDDERVID 1015
G G+ A GD V+EY G+L+ + A +RE +Y G YM+ + +D
Sbjct: 40 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE-ALYAQDPSTGCYMYYFQYLSKTYCVD 98
Query: 1016 ATR-AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
ATR + LINHS NC +++ ++G H+I+ A RDI EEL YDY
Sbjct: 99 ATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 942 MKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGA 1001
++ R RL ++ G+G+ + G V EY GEL+ S AD RE
Sbjct: 140 VQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--------- 190
Query: 1002 GTYMFRIDDER----VIDATRAGSIAHLINHSCEPNCYS-RVISVNGD---EHIIIFAKR 1053
+Y+F +D++ IDA G+++ INH CEPN RV + D I F+ R
Sbjct: 191 DSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR 250
Query: 1054 DIKQWEELTYDY--RFFSIDEQL-ACYCGFPRCR 1084
I+ E+L +D RF+ I +L +C CG P+CR
Sbjct: 251 LIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKCR 284
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFR---IDDERVID 1015
G G+ A GD V+EY G+L+ + A +RE +Y G YM+ + +D
Sbjct: 42 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE-ALYAQDPSTGCYMYYFQYLSKTYCVD 100
Query: 1016 ATR-AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
ATR + LINHS NC +++ ++G H+I+ A RDI EEL YDY
Sbjct: 101 ATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFR---IDDERVID 1015
G G+ A GD V+EY G+L+ + A +RE +Y G YM+ + +D
Sbjct: 36 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE-ALYAQDPSTGCYMYYFQYLSKTYCVD 94
Query: 1016 ATR-AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
ATR + LINHS NC +++ ++G H+I+ A RDI EEL YDY
Sbjct: 95 ATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
Length = 166
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFR---IDDERVID 1015
G G+ A GD V+E+ G+L+ + A +RE +Y G YM+ + +D
Sbjct: 41 GRGVIATKQFSRGDFVVEFHGDLIEITDAKKRE-ALYAQDPSTGCYMYYFQYLSKTYCVD 99
Query: 1016 ATR-AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
ATR + LINHS NC +++ ++G H+I+ A RDI EEL YDY
Sbjct: 100 ATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
Length = 166
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFR---IDDERVID 1015
G G+ A GD V+EY G+L+ + A +RE +Y G YM+ + +D
Sbjct: 41 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE-ALYAQDPSTGCYMYYFQYLSKTYCVD 99
Query: 1016 ATR-AGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
ATR + LINHS NC +++ ++G H+I+ A RDI EEL +DY
Sbjct: 100 ATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
Length = 299
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 950 LAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRID 1009
L K+ G+G+ + AG + Y GE++ + A +R+ N TY+F +D
Sbjct: 139 LEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDK---NYDDDGITYLFDLD 195
Query: 1010 -----DERVIDATRAGSIAHLINHSCEPN--CYSRVIS--VNGDEHIIIFAKRDIKQWEE 1060
E +DA G ++ NHSC PN YS V + + FA +DI+ EE
Sbjct: 196 MFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEE 255
Query: 1061 LTYDYR----FFSIDEQLA-----------CYCGFPRCRG 1085
LT+DY F + Q + C CG CRG
Sbjct: 256 LTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRG 295
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 971 GDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDD--------ERVIDATRAGSI 1022
G V EY GE++ S RR H S Y+ I + E +D T G+I
Sbjct: 149 GRFVCEYAGEVLGFSEVQRRIHLQTKS---DSNYIIAIREHVYNGQVMETFVDPTYIGNI 205
Query: 1023 AHLINHSCEPNCYSRVISVNGDEHI---IIFAKRDIKQWEELTYDY--RFFSID-----E 1072
+NHSCEPN +I V D + +FA +DI EEL+YDY R+ ++ E
Sbjct: 206 GRFLNHSCEPNLL--MIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKE 263
Query: 1073 QL-------ACYCGFPRCRGVV 1087
+L CYCG C +
Sbjct: 264 RLDHGKLRKPCYCGAKSCTAFL 285
>pdb|2WZO|A Chain A, The Structure Of The Fyr Domain
Length = 146
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 477 ISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRD 536
+ P G L + SLG+I+ D F D+ I+P GY + R + S+ P Y ++
Sbjct: 4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQI--- 60
Query: 537 TESKIRPLFRVTLDNGEQ--FTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISES 594
+ ++P F + ++ Q S+ C +++ I + GA
Sbjct: 61 KDGGVQPQFEIVPEDDPQNAIVSSSADACHAELLRTISTTMGKLMPNLLPAGA------- 113
Query: 595 GSDMFGFSNPEVMKLILGLTKSR 617
D FGFS+P + LI +R
Sbjct: 114 --DFFGFSHPAIHNLIQSCPGAR 134
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 37/162 (22%)
Query: 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVG--AGTYMFRID---DERV 1013
G+G+ + G V Y GE++ ADRR S + Y+F +D D
Sbjct: 144 GWGVKCPVNIKRGQFVDRYLGEIITSEEADRRR---AESTIARRKDVYLFALDKFSDPDS 200
Query: 1014 IDATRAGS-----------IAHLINHSCEPN--CYSRVISVNGDEHI---IIFAKRDIKQ 1057
+D AG INHSC+PN ++RV + D+HI +FA +DI +
Sbjct: 201 LDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARV-GDHADKHIHDLALFAIKDIPK 259
Query: 1058 WEELTYDY------------RFFSIDEQLACYCGFPRCRGVV 1087
ELT+DY I E C CG +CRG +
Sbjct: 260 GTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain
Length = 153
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVK 391
++ +PGD+I+AK+ G+ WPA VDE G K +P+ FFGTH+ A + K
Sbjct: 21 RDFKPGDLIFAKMKGYPHWPA-RVDEVPDGAVK-----PPTNKLPIFFFGTHETAFLGPK 74
Query: 392 QVISFLKGLLSSFHLKCKKPRFTQSLEE----AKVYLSEQKLPRRMLQLQNAIRADDGEN 447
+ + + + K+ F + L E KV S Q+ + + + ++ E
Sbjct: 75 DIFPYSEN-KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKET 133
Query: 448 SWSQDE 453
S S+++
Sbjct: 134 SVSKED 139
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
Length = 87
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 758 RWKLLCSIC---GVSYGACIQCSNTTCRVAYHPLCARAAGL 795
RWKL C +C GV GA IQC C A+H CA+ AGL
Sbjct: 15 RWKLTCYLCKQKGV--GASIQCHKANCYTAFHVTCAQKAGL 53
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch
Repair Protein Hmsh6
Length = 134
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 324 LAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTH 383
+A + + PGD++WAK+ G+ WP++V + G + + + + VQFF
Sbjct: 13 VAPAAPTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTF--IREKGKSVRVHVQFFDDS 70
Query: 384 DFARINVKQVISFLKGLLS-----SFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQN 438
K+++ G S H KP ++++ A L++ K+ R L + +
Sbjct: 71 PTRGWVSKRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVSD 130
>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVK 391
++ +PGD+I+AK+ G+ WPA VDE G K +P+ FFGTH+ A + K
Sbjct: 7 RDFKPGDLIFAKMKGYPHWPA-RVDEVPDGAVK-----PPTNKLPIFFFGTHETAFLGPK 60
Query: 392 QVISF 396
+ +
Sbjct: 61 DIFPY 65
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta
pdb|3QKJ|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|B Chain B, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|C Chain C, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|D Chain D, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
Length = 151
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 325 AASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNK---ISGGRSIPVQFFG 381
++ D +E GD++W K+ G + WPA+VV +K +K +SG R VQ+FG
Sbjct: 10 SSEYQDGKEFGIGDLVWGKIKGFSWWPAMVV------SWKATSKRQAMSGMRW--VQWFG 61
Query: 382 THDFARINVKQVISFLKGLLS 402
F+ ++ ++++ GL S
Sbjct: 62 DGKFSEVSADKLVAL--GLFS 80
>pdb|2DAQ|A Chain A, Solution Structure Of Second Pwwp Domain Of Whsc1l1
Protein
Length = 110
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 339 IIWAKLTGHAMWPAIVVD-ESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFL 397
I+W KL + WPA + + S+ + +GL G PV FFG+HD+ ++ +V ++
Sbjct: 14 IVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLG--DFPVFFFGSHDYYWVHQGRVFPYV 71
Query: 398 KGLLSSFHLKCK-KPRFTQSLEEAKVYLSEQK 428
+G S + F ++LEEA E K
Sbjct: 72 EGDKSFAEGQTSINKTFKKALEEAAKRFQELK 103
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna
Methyltransferase Dnmt3b
Length = 147
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 330 DCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIP----VQFFGTHDF 385
D +E GD++W K+ G + WPA+VV +K +K +++P VQ+FG F
Sbjct: 8 DDKEFGIGDLVWGKIKGFSWWPAMVV------SWKATSK---RQAMPGMRWVQWFGDGKF 58
Query: 386 ARINVKQVISFLKGLLS 402
+ I+ ++++ GL S
Sbjct: 59 SEISADKLVAL--GLFS 73
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form Iii)
Length = 464
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 239 LLNHSCDPNCS---IVFNGP-HLLLRAVRDIEVGEELTICY 275
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin
Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin
Bound
Length = 438
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 205 LLNHSCDPNCS---IVFNG-PHLLLRAVRDIEVGEELTICY 241
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc
Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 204 LLNHSCDPNCS---IVFNG-PHLLLRAVRDIEVGEELTICY 240
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form I)
Length = 436
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 203 LLNHSCDPNCS---IVFNGP-HLLLRAVRDIEVGEELTICY 239
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase
Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form Ii)
Length = 428
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 203 LLNHSCDPNCS---IVFNG-PHLLLRAVRDIEVGEELTICY 239
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065
L+NHSC+PNC I NG H+++ A RDI+ EELT Y
Sbjct: 204 LLNHSCDPNCS---IVFNG-PHLLLRAVRDIEVGEELTICY 240
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
pdb|3EAE|B Chain B, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
Length = 93
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQV 393
+PGD+++AK+ G+ WPA + D I D G K + P+ FFGTH+ A + K +
Sbjct: 5 FKPGDLVFAKMKGYPHWPARIDD---IAD--GAVKPPPNK-YPIFFFGTHETAFLGPKDL 58
Query: 394 ISFLK 398
+ K
Sbjct: 59 FPYDK 63
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|B Chain B, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|C Chain C, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QJ6|A Chain A, The Crystal Structure Of Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2 In Complex With
H3k79me3 Peptide
Length = 94
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQV 393
+PGD+++AK+ G+ WPA + D I D G K + P+ FFGTH+ A + K +
Sbjct: 6 FKPGDLVFAKMKGYPHWPARIDD---IAD--GAVKPPPNK-YPIFFFGTHETAFLGPKDL 59
Query: 394 ISFLK 398
+ K
Sbjct: 60 FPYDK 64
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-
Derived Growth Factor, Related Protein 3
Length = 96
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 333 ELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQ 392
E + GD+++AK+ G+ WPA +DE G K P+ FFGTH+ A + K
Sbjct: 8 EYKAGDLVFAKMKGYPHWPA-RIDELPEGAVK-----PPANKYPIFFFGTHETAFLGPKD 61
Query: 393 VISFLKGLLSSFHLKCKKPRFTQSLEE 419
+ + K F K+ F + L E
Sbjct: 62 LFPY-KEYKDKFGKSNKRKGFNEGLWE 87
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 651 CSVCHMDEEYQN-NLFLQCDKCRMMVHARCYGELEPVNGVLWLC 693
CS+C MD E QN N+ L CD C + VH CYG G WLC
Sbjct: 28 CSIC-MDGESQNSNVILFCDMCNLAVHQECYGVPYIPEG-QWLC 69
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 534 LRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAA-EKIS 592
LRDT PL RVTL +G Q T K+ R N T D+F A A E +
Sbjct: 33 LRDTPG---PLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNRTDDNFPATSPAFEAVR 89
Query: 593 ESGSDMFGFSNPE 605
ES G PE
Sbjct: 90 ESPQAFIGLDPPE 102
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 534 LRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAA-EKIS 592
LRDT PL RVTL +G Q T K+ R N T D+F A A E +
Sbjct: 33 LRDTPG---PLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNATDDNFPATSPAFEAVR 89
Query: 593 ESGSDMFGFSNPE 605
ES G PE
Sbjct: 90 ESPQAFIGLDPPE 102
>pdb|3LLR|A Chain A, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|B Chain B, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|C Chain C, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|D Chain D, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|E Chain E, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
Length = 154
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 329 DDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARI 388
+D + G+++W KL G + WP +V + G + G R V +FG F+ +
Sbjct: 12 EDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAE---GTRW--VMWFGDGKFSVV 66
Query: 389 NVKQVISFLKGLLSSFHLKC--KKPRFTQSLEE 419
V++++ L S+FH K+P + +++ E
Sbjct: 67 CVEKLMP-LSSFCSAFHQATYNKQPMYRKAIYE 98
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 651 CSVCHMDEEYQN-NLFLQCDKCRMMVHARCYGELEPVNGVLWLC 693
CS+C MD E QN N+ L CD C + VH CYG G WLC
Sbjct: 19 CSIC-MDGESQNSNVILFCDMCNLAVHQECYGVPYIPEG-QWLC 60
>pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1
Length = 342
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 878 PEALAAASLKR--LFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSM 935
PE A LK +FVE + Y+ GY +N L+ N +PS + I +F+ +L + P + +
Sbjct: 254 PEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDI-REFAEALVKHLPGY-HI 311
Query: 936 ADKYKHMKETFRKRLAFGKSGIHGFGIFAKH 966
D+Y+ + R G G F KH
Sbjct: 312 EDEYEPSRVVLIMRDDVDPQGTGVEGRFIKH 342
>pdb|3PFS|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
pdb|3PFS|B Chain B, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
Length = 158
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 324 LAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPV 377
L +D +LEP +++WAK G+ +PA+++D + +GL + G IPV
Sbjct: 27 LLLPFEDRGDLEPLELVWAKCRGYPSYPALIIDPKM--PREGL--LHNGVPIPV 76
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 534 LRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAA-EKIS 592
LRDT PL RVTL +G Q T K+ R N T D+F A E +
Sbjct: 33 LRDTPG---PLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNRTDDNFPATSPRFEAVR 89
Query: 593 ESGSDMFGFSNPE 605
ES G PE
Sbjct: 90 ESPQAFIGLDPPE 102
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 534 LRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGA-AEKIS 592
LRDT PL RVTL +G Q T K+ R N T D+F A E +
Sbjct: 33 LRDTPG---PLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNRTDDNFPATSPFFEAVR 89
Query: 593 ESGSDMFGFSNPE 605
ES G PE
Sbjct: 90 ESPQAFIGLDPPE 102
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
pdb|2NLU|B Chain B, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
Length = 100
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVK 391
+E + GD+++AK+ G+ WPA +DE K S V FFGTH+ A + K
Sbjct: 8 KEYKCGDLVFAKMKGYPHWPA-RIDEMPEAAVK-----STANKYQVFFFGTHETAFLGPK 61
Query: 392 QVISF 396
+ +
Sbjct: 62 DLFPY 66
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf
Length = 110
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVK 391
+E + GD+++AK+ G+ WPA +DE K S V FFGTH+ A + K
Sbjct: 18 KEYKCGDLVFAKMKGYPHWPA-RIDEMPEAAVK-----STANKYQVFFFGTHETAFLGPK 71
Query: 392 QVISF 396
+ +
Sbjct: 72 DLFPY 76
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain
Length = 110
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVK 391
+E + GD+++AK+ G+ WPA +DE K S V FFGTH+ A + K
Sbjct: 8 KEYKCGDLVFAKMKGYPHWPA-RIDEMPEAAVK-----STANKYQVFFFGTHETAFLGPK 61
Query: 392 QVISFLKGLLSSFHLKCKKPRFTQSLEE--------AKVYLSEQK 428
+ + + F K+ F++ L E A Y S QK
Sbjct: 62 DLFPYEES-KEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQK 105
>pdb|1H3Z|A Chain A, Solution Structure Of A Pwwp Domain From
Schizosaccharomyces Pombe
Length = 109
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 335 EPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKIS-GGRSIPVQFFGTHDFARINVKQV 393
+PG + K++G WP++VV ES + +K G PV FF ++ +
Sbjct: 8 KPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSL 67
Query: 394 ISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLP 430
+S F L+ KP+ T SL K Y Q P
Sbjct: 68 TPLTSEAISQF-LEKPKPK-TASL--IKAYKMAQSTP 100
>pdb|3LYI|A Chain A, Pwwp Domain Of Human Bromodomain-Containing Protein 1
pdb|3LYI|B Chain B, Pwwp Domain Of Human Bromodomain-Containing Protein 1
Length = 126
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 334 LEPGDIIWAKLTGHAMWPAIVVDESL 359
LEP ++WAK +G+ +PA+++D +
Sbjct: 4 LEPLKVVWAKCSGYPSYPALIIDPKM 29
>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
Length = 353
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 472 LGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTA-----VRKFTSLADPR 524
+GSI SP G L L I +DS RF+ PE TA VR+ LA R
Sbjct: 237 VGSIAFSPLAGGQLTDRYLNGIPEDSRAASGSRFLKPEQITADKLEKVRRLNELAARR 294
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 1006 FRIDDERVIDATRAGSIAHL--INHSCEPNCYSRVISVNGDEHII-----------IFAK 1052
F + D+R + A G +L +NH C PNC VI NG+ + + A
Sbjct: 182 FTLSDQRGLQAVGVGIFPNLGLVNHDCWPNC--TVIFNNGNHEAVKSMFHTQMRIELRAL 239
Query: 1053 RDIKQWEELTYDY-RFFSIDEQ 1073
I + EELT Y F + E+
Sbjct: 240 GKISEGEELTVSYIDFLHLSEE 261
>pdb|2L8D|A Chain A, StructureFUNCTION OF THE LBR TUDOR DOMAIN
Length = 66
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 250 WPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQ 296
WP +Y V YD S+ + VKY DG E L S+ R++ Q
Sbjct: 20 WPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKESDIRLQSSFKQ 66
>pdb|2A20|A Chain A, Solution Structure Of Rim2 Zinc Finger Domain
pdb|2CJS|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 62
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 647 DLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELE-PVNGVLWLCNL 695
D C +CH ++ + C C+ ARC G + N V+W+CNL
Sbjct: 8 DAPTCGICH-KTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNL 56
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human Histone-Lysine
N- Methyltransferase Suv420h1 In Complex With
S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human Histone-Lysine
N- Methyltransferase Suv420h1 In Complex With
S-Adenosyl-L-Methionine
Length = 273
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 1023 AHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELT--YDYRFFSIDEQLA-CY 1077
A INH C PNC + +S G + + A RDI+ EE++ Y FF + + CY
Sbjct: 206 AAFINHDCRPNC--KFVST-GRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECY 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,622,173
Number of Sequences: 62578
Number of extensions: 1249059
Number of successful extensions: 2510
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2425
Number of HSP's gapped (non-prelim): 74
length of query: 1112
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1003
effective length of database: 8,152,335
effective search space: 8176792005
effective search space used: 8176792005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)