Query 001263
Match_columns 1112
No_of_seqs 792 out of 2876
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 3.6E-62 7.8E-67 601.4 23.2 728 213-1088 256-1005(1005)
2 KOG0954 PHD finger protein [Ge 100.0 3.1E-38 6.7E-43 364.2 7.5 313 473-832 103-440 (893)
3 KOG0956 PHD finger protein AF1 100.0 8.7E-38 1.9E-42 357.1 6.0 168 650-831 7-183 (900)
4 KOG4442 Clathrin coat binding 100.0 5.2E-36 1.1E-40 347.7 14.5 160 933-1093 105-265 (729)
5 COG5141 PHD zinc finger-contai 100.0 6.1E-36 1.3E-40 331.2 4.6 187 638-835 183-369 (669)
6 KOG0955 PHD finger protein BR1 100.0 2.1E-34 4.6E-39 355.6 9.7 179 646-831 217-396 (1051)
7 KOG1079 Transcriptional repres 100.0 4.5E-30 9.8E-35 296.3 9.7 178 890-1071 524-714 (739)
8 KOG0957 PHD finger protein [Ge 99.9 5.7E-29 1.2E-33 276.4 3.1 170 648-832 119-302 (707)
9 PF13832 zf-HC5HC2H_2: PHD-zin 99.9 1.2E-23 2.7E-28 203.0 7.6 109 706-828 2-110 (110)
10 cd05834 HDGF_related The PWWP 99.9 1.6E-22 3.4E-27 184.0 7.8 81 333-422 2-82 (83)
11 KOG1082 Histone H3 (Lys9) meth 99.9 1.5E-22 3.2E-27 234.4 8.7 158 934-1091 162-357 (364)
12 cd05836 N_Pac_NP60 The PWWP do 99.9 3.4E-22 7.3E-27 183.2 7.1 86 334-424 1-86 (86)
13 smart00317 SET SET (Su(var)3-9 99.9 5.3E-21 1.2E-25 184.4 13.6 115 950-1065 2-116 (116)
14 cd05838 WHSC1_related The PWWP 99.8 2.7E-21 5.8E-26 180.7 7.4 92 334-426 1-94 (95)
15 KOG1083 Putative transcription 99.8 1.7E-21 3.6E-26 233.0 5.1 134 937-1072 1166-1300(1306)
16 cd05835 Dnmt3b_related The PWW 99.8 4.6E-21 1E-25 176.4 6.1 84 334-423 1-86 (87)
17 cd05840 SPBC215_ISWI_like The 99.8 6.8E-21 1.5E-25 176.8 6.2 87 334-421 1-91 (93)
18 cd05162 PWWP The PWWP domain, 99.8 1.5E-20 3.2E-25 173.8 7.7 86 334-422 1-86 (87)
19 cd05841 BS69_related The PWWP 99.8 1.3E-20 2.8E-25 169.3 6.6 75 334-422 7-82 (83)
20 PF00855 PWWP: PWWP domain; I 99.8 3.6E-20 7.9E-25 170.7 4.6 84 334-423 1-86 (86)
21 smart00293 PWWP domain with co 99.8 7E-19 1.5E-23 152.2 6.1 63 334-397 1-63 (63)
22 KOG1085 Predicted methyltransf 99.7 4.6E-18 9.9E-23 179.5 9.9 123 946-1069 254-380 (392)
23 cd05837 MSH6_like The PWWP dom 99.7 7.6E-18 1.6E-22 161.9 7.7 90 333-422 2-101 (110)
24 cd06080 MUM1_like Mutated mela 99.6 3E-16 6.4E-21 140.5 5.6 75 334-420 1-76 (80)
25 cd05839 BR140_related The PWWP 99.6 2E-15 4.3E-20 143.2 7.2 66 334-399 1-81 (111)
26 COG2940 Proteins containing SE 99.6 4.5E-16 9.8E-21 187.2 1.5 140 947-1088 331-480 (480)
27 KOG1141 Predicted histone meth 99.5 8.4E-15 1.8E-19 171.7 5.7 76 1012-1087 1179-1261(1262)
28 PF13771 zf-HC5HC2H: PHD-like 99.5 5.8E-15 1.3E-19 137.3 3.5 88 727-829 1-90 (90)
29 PF05964 FYRN: F/Y-rich N-term 99.5 2E-14 4.4E-19 120.0 3.4 54 482-535 1-54 (54)
30 KOG1904 Transcription coactiva 99.4 1.1E-13 2.5E-18 161.1 6.5 91 331-428 10-102 (496)
31 PF00856 SET: SET domain; Int 99.4 5.7E-13 1.2E-17 134.8 7.6 108 959-1066 1-162 (162)
32 PF05965 FYRC: F/Y rich C-term 99.4 2.1E-13 4.7E-18 125.7 3.1 80 542-626 3-84 (86)
33 smart00542 FYRC "FY-rich" doma 99.4 3.8E-13 8.3E-18 123.6 4.0 80 544-628 1-82 (86)
34 PF09465 LBR_tudor: Lamin-B re 99.1 1.3E-10 2.9E-15 95.0 6.2 48 241-290 7-54 (55)
35 smart00541 FYRN "FY-rich" doma 99.0 2.7E-10 6E-15 90.7 4.3 41 493-533 2-42 (44)
36 PF13831 PHD_2: PHD-finger; PD 99.0 1.4E-10 2.9E-15 88.4 0.5 36 662-697 1-36 (36)
37 KOG1081 Transcription factor N 98.8 1.3E-09 2.8E-14 129.4 1.9 127 963-1096 319-445 (463)
38 KOG2589 Histone tail methylase 98.7 1.1E-08 2.5E-13 112.6 5.7 114 957-1078 136-250 (453)
39 PF00628 PHD: PHD-finger; Int 97.7 1.5E-05 3.2E-10 66.0 1.6 45 650-697 1-49 (51)
40 smart00249 PHD PHD zinc finger 97.5 7.4E-05 1.6E-09 59.9 3.6 45 650-696 1-47 (47)
41 KOG4323 Polycomb-like PHD Zn-f 97.5 7.8E-05 1.7E-09 87.1 4.8 117 648-793 83-203 (464)
42 KOG2461 Transcription factor B 97.4 0.00012 2.6E-09 85.5 4.7 110 946-1069 26-146 (396)
43 PF15057 DUF4537: Domain of un 97.4 0.00085 1.8E-08 66.4 9.6 112 243-398 1-114 (124)
44 KOG1244 Predicted transcriptio 97.2 0.00015 3.3E-09 77.7 2.0 49 647-698 280-330 (336)
45 smart00333 TUDOR Tudor domain. 97.1 0.00072 1.6E-08 57.1 5.0 44 241-286 4-48 (57)
46 KOG4323 Polycomb-like PHD Zn-f 97.1 0.00029 6.3E-09 82.5 3.1 54 648-701 168-226 (464)
47 KOG1512 PHD Zn-finger protein 96.9 0.00041 8.8E-09 74.8 1.7 48 647-697 313-361 (381)
48 cd04508 TUDOR Tudor domains ar 96.8 0.0018 4E-08 52.6 4.8 43 243-286 1-44 (48)
49 smart00743 Agenet Tudor-like d 96.8 0.0018 3.9E-08 55.7 4.8 36 241-277 4-39 (61)
50 PF15446 zf-PHD-like: PHD/FYVE 96.6 0.0014 3.1E-08 66.4 3.1 69 650-718 1-85 (175)
51 KOG1081 Transcription factor N 96.4 0.0016 3.4E-08 78.1 2.4 54 333-396 135-188 (463)
52 KOG1084 Transcription factor T 96.1 0.0022 4.7E-08 74.9 1.4 86 704-796 221-307 (375)
53 KOG0825 PHD Zn-finger protein 96.0 0.0027 5.8E-08 76.8 1.8 49 647-698 214-265 (1134)
54 PF09038 53-BP1_Tudor: Tumour 95.8 0.014 3E-07 56.4 5.0 46 238-284 1-46 (122)
55 KOG4675 Uncharacterized conser 95.7 0.0031 6.6E-08 68.8 0.1 63 232-294 151-221 (273)
56 smart00508 PostSET Cysteine-ri 95.6 0.0064 1.4E-07 42.9 1.4 19 1073-1091 2-20 (26)
57 KOG4299 PHD Zn-finger protein 95.5 0.005 1.1E-07 73.9 1.2 48 649-699 254-305 (613)
58 KOG1973 Chromatin remodeling p 94.8 0.012 2.6E-07 66.3 1.4 37 663-700 230-269 (274)
59 COG5034 TNG2 Chromatin remodel 94.8 0.018 3.9E-07 62.1 2.6 50 644-698 217-269 (271)
60 PF06003 SMN: Survival motor n 93.9 0.096 2.1E-06 58.7 6.0 45 242-286 71-116 (264)
61 KOG0383 Predicted helicase [Ge 92.1 0.061 1.3E-06 66.9 1.4 50 643-698 42-93 (696)
62 KOG1141 Predicted histone meth 88.9 0.35 7.6E-06 59.6 3.8 57 935-991 786-842 (1262)
63 PF08169 RBB1NT: RBB1NT (NUC16 88.5 0.73 1.6E-05 43.3 4.7 85 336-430 8-94 (96)
64 KOG4443 Putative transcription 88.5 0.18 4E-06 61.1 1.0 48 648-698 68-117 (694)
65 PF11717 Tudor-knot: RNA bindi 88.4 0.49 1.1E-05 40.0 3.3 52 334-394 1-54 (55)
66 KOG1245 Chromatin remodeling c 88.3 0.12 2.6E-06 69.4 -0.7 49 649-700 1109-1159(1404)
67 PF14446 Prok-RING_1: Prokaryo 88.2 0.32 6.8E-06 40.7 1.9 33 648-681 5-37 (54)
68 smart00249 PHD PHD zinc finger 87.7 0.3 6.6E-06 38.7 1.6 31 762-794 1-33 (47)
69 smart00743 Agenet Tudor-like d 84.7 1.2 2.5E-05 38.2 3.8 52 333-396 2-56 (61)
70 KOG0957 PHD finger protein [Ge 81.9 1.1 2.4E-05 52.6 3.2 49 646-696 542-595 (707)
71 KOG1512 PHD Zn-finger protein 81.1 0.59 1.3E-05 51.3 0.6 50 648-697 258-315 (381)
72 PF00628 PHD: PHD-finger; Int 80.5 0.83 1.8E-05 37.6 1.2 30 763-794 2-33 (51)
73 smart00333 TUDOR Tudor domain. 80.3 2 4.4E-05 35.9 3.6 54 333-398 2-55 (57)
74 KOG4443 Putative transcription 79.6 0.74 1.6E-05 56.1 0.9 60 649-718 19-81 (694)
75 KOG1473 Nucleosome remodeling 79.0 1.9 4.2E-05 55.3 4.2 110 648-791 344-458 (1414)
76 KOG2084 Predicted histone tail 78.7 2.7 5.8E-05 50.7 5.4 41 1025-1069 208-249 (482)
77 KOG1973 Chromatin remodeling p 78.0 1.1 2.4E-05 50.6 1.6 29 762-790 220-250 (274)
78 KOG1244 Predicted transcriptio 77.9 0.87 1.9E-05 49.8 0.7 76 649-732 225-312 (336)
79 cd04718 BAH_plant_2 BAH, or Br 76.7 1.7 3.7E-05 44.1 2.3 26 674-700 1-28 (148)
80 PF07649 C1_3: C1-like domain; 75.9 1.2 2.7E-05 32.6 0.8 28 650-679 2-29 (30)
81 PF11793 FANCL_C: FANCL C-term 74.3 2.4 5.3E-05 37.7 2.4 50 649-698 3-63 (70)
82 PF00130 C1_1: Phorbol esters/ 71.6 4.2 9.1E-05 33.7 3.1 36 648-683 11-46 (53)
83 cd04508 TUDOR Tudor domains ar 68.9 5.5 0.00012 32.1 3.2 47 337-395 1-48 (48)
84 PF07039 DUF1325: SGF29 tudor- 67.8 35 0.00077 34.2 9.3 110 252-396 15-128 (130)
85 PF03107 C1_2: C1 domain; Int 67.0 4.3 9.2E-05 29.9 1.9 28 650-679 2-29 (30)
86 PF05641 Agenet: Agenet domain 66.7 10 0.00022 33.4 4.7 36 242-278 3-41 (68)
87 cd00029 C1 Protein kinase C co 64.7 3.3 7.1E-05 33.6 1.1 35 648-682 11-45 (50)
88 KOG1337 N-methyltransferase [G 64.5 4.5 9.8E-05 49.4 2.7 40 1025-1067 239-278 (472)
89 KOG1044 Actin-binding LIM Zn-f 60.8 4.2 9E-05 49.2 1.4 102 689-796 112-225 (670)
90 PF08605 Rad9_Rad53_bind: Fung 60.2 24 0.00053 35.4 6.5 43 245-292 15-57 (131)
91 PF05502 Dynactin_p62: Dynacti 58.6 9.1 0.0002 46.8 3.8 52 664-719 4-64 (483)
92 PF13901 DUF4206: Domain of un 58.2 7.1 0.00015 42.1 2.6 42 649-698 153-197 (202)
93 PF02318 FYVE_2: FYVE-type zin 57.2 7 0.00015 38.4 2.1 49 648-698 54-102 (118)
94 KOG2041 WD40 repeat protein [G 56.8 4.5 9.8E-05 49.8 0.8 108 594-712 1068-1182(1189)
95 KOG0644 Uncharacterized conser 56.7 12 0.00027 47.1 4.4 43 242-284 981-1035(1113)
96 PF11717 Tudor-knot: RNA bindi 56.0 20 0.00044 30.2 4.4 35 242-277 3-39 (55)
97 KOG1080 Histone H3 (Lys4) meth 55.9 12 0.00026 49.3 4.4 92 332-425 190-293 (1005)
98 smart00109 C1 Protein kinase C 54.9 5 0.00011 32.2 0.6 34 648-682 11-44 (49)
99 PF14569 zf-UDP: Zinc-binding 49.4 7.9 0.00017 34.9 0.9 50 647-698 8-59 (80)
100 KOG3026 Splicing factor SPF30 48.3 18 0.00039 39.3 3.6 35 242-276 93-127 (262)
101 KOG3799 Rab3 effector RIM1 and 48.3 8.1 0.00018 38.1 0.9 53 646-699 63-116 (169)
102 PF11764 N-SET: COMPASS (Compl 47.0 5.1 0.00011 41.9 -0.7 16 855-870 78-93 (167)
103 PHA02862 5L protein; Provision 46.7 6.9 0.00015 39.4 0.2 50 649-714 3-52 (156)
104 KOG3038 Histone acetyltransfer 46.0 1.3E+02 0.0027 33.6 9.5 109 240-384 128-240 (264)
105 PF07227 DUF1423: Protein of u 45.9 9.9 0.00021 45.2 1.3 14 721-734 151-164 (446)
106 KOG1525 Sister chromatid cohes 45.7 0.81 1.8E-05 60.9 -8.3 58 236-293 983-1041(1266)
107 KOG0383 Predicted helicase [Ge 41.5 15 0.00032 46.5 2.0 32 761-795 48-79 (696)
108 KOG1844 PHD Zn-finger proteins 41.2 15 0.00033 45.1 2.1 49 649-699 87-135 (508)
109 PF07227 DUF1423: Protein of u 39.0 24 0.00052 42.1 3.0 31 650-680 130-161 (446)
110 COG5475 Uncharacterized small 39.0 68 0.0015 27.2 4.7 52 332-398 3-56 (60)
111 PF10080 DUF2318: Predicted me 38.8 14 0.00031 35.4 1.0 34 648-681 35-68 (102)
112 COG5034 TNG2 Chromatin remodel 38.5 25 0.00055 38.7 2.9 35 756-790 216-252 (271)
113 PF13639 zf-RING_2: Ring finge 38.1 15 0.00032 29.2 0.9 31 649-681 1-31 (44)
114 PF11781 RRN7: RNA polymerase 37.2 24 0.00052 27.3 1.8 26 649-674 9-34 (36)
115 KOG0825 PHD Zn-finger protein 37.0 16 0.00035 45.7 1.3 96 689-792 145-248 (1134)
116 cd04712 BAH_DCM_I BAH, or Brom 36.2 36 0.00078 34.1 3.4 49 331-384 3-60 (130)
117 PF14446 Prok-RING_1: Prokaryo 36.2 28 0.0006 29.5 2.1 35 761-797 6-43 (54)
118 PF12861 zf-Apc11: Anaphase-pr 35.9 17 0.00037 33.6 1.0 49 647-698 20-79 (85)
119 PLN02436 cellulose synthase A 35.2 37 0.00081 44.7 4.1 51 647-699 35-87 (1094)
120 KOG2752 Uncharacterized conser 35.1 35 0.00076 38.7 3.4 114 649-796 56-170 (345)
121 PF08746 zf-RING-like: RING-li 34.0 15 0.00033 29.5 0.3 30 763-792 1-30 (43)
122 PLN02400 cellulose synthase 32.5 49 0.0011 43.8 4.6 51 647-699 35-87 (1085)
123 KOG0954 PHD finger protein [Ge 32.1 23 0.00049 44.3 1.4 34 762-797 325-359 (893)
124 KOG2807 RNA polymerase II tran 31.9 28 0.00061 39.6 2.0 87 686-792 272-362 (378)
125 PLN00104 MYST -like histone ac 31.7 55 0.0012 39.4 4.5 62 328-394 48-112 (450)
126 PLN02638 cellulose synthase A 31.6 32 0.0007 45.4 2.7 51 647-699 16-68 (1079)
127 PF13771 zf-HC5HC2H: PHD-like 31.1 37 0.0008 31.2 2.4 33 704-736 36-71 (90)
128 PF07649 C1_3: C1-like domain; 30.7 19 0.00041 26.4 0.3 27 762-790 2-30 (30)
129 KOG0696 Serine/threonine prote 30.5 13 0.00027 43.8 -1.0 82 648-738 56-160 (683)
130 PF12906 RINGv: RING-variant d 30.4 18 0.0004 29.5 0.2 30 651-681 1-33 (47)
131 PF12773 DZR: Double zinc ribb 30.3 40 0.00087 27.5 2.2 38 665-710 12-49 (50)
132 PF13832 zf-HC5HC2H_2: PHD-zin 29.6 28 0.00061 33.4 1.4 30 648-681 55-86 (110)
133 smart00547 ZnF_RBZ Zinc finger 29.4 28 0.0006 24.4 1.0 23 690-712 2-24 (26)
134 KOG0955 PHD finger protein BR1 29.4 40 0.00086 44.7 3.0 65 334-398 943-1026(1051)
135 PLN02915 cellulose synthase A 29.2 35 0.00075 44.9 2.4 50 648-699 15-66 (1044)
136 PF09926 DUF2158: Uncharacteri 27.9 1.1E+02 0.0024 25.9 4.4 41 334-384 1-41 (53)
137 PF08666 SAF: SAF domain; Int 27.8 33 0.00071 29.1 1.3 15 1048-1062 3-17 (63)
138 KOG1338 Uncharacterized conser 26.8 42 0.0009 39.3 2.3 42 1021-1068 217-261 (466)
139 PF10447 EXOSC1: Exosome compo 26.2 38 0.00082 31.2 1.5 14 331-344 66-79 (82)
140 KOG4477 RING1 interactor RYBP 25.9 33 0.00071 35.8 1.1 30 690-719 24-53 (228)
141 PLN02195 cellulose synthase A 25.9 41 0.00089 44.0 2.3 48 649-698 7-56 (977)
142 PLN02189 cellulose synthase 25.8 53 0.0011 43.4 3.2 51 647-699 33-85 (1040)
143 PF00641 zf-RanBP: Zn-finger i 24.7 25 0.00053 25.7 0.0 23 690-712 4-26 (30)
144 PLN00104 MYST -like histone ac 24.3 1.2E+02 0.0025 36.7 5.4 35 242-276 56-96 (450)
145 COG5194 APC11 Component of SCF 23.9 22 0.00047 32.3 -0.5 31 762-792 22-65 (88)
146 KOG3268 Predicted E3 ubiquitin 23.2 27 0.0006 36.2 0.0 35 647-681 164-200 (234)
147 PF09465 LBR_tudor: Lamin-B re 23.2 1.1E+02 0.0023 26.1 3.4 25 332-356 4-29 (55)
148 smart00744 RINGv The RING-vari 22.9 38 0.00082 28.0 0.8 31 650-681 1-34 (49)
149 PF08274 PhnA_Zn_Ribbon: PhnA 22.4 39 0.00086 25.1 0.7 25 649-673 3-27 (30)
150 PF10367 Vps39_2: Vacuolar sor 21.3 66 0.0014 30.3 2.2 31 647-680 77-107 (109)
151 KOG0782 Predicted diacylglycer 20.8 19 0.00042 43.3 -1.8 19 665-683 199-217 (1004)
152 PF11793 FANCL_C: FANCL C-term 20.7 46 0.00099 29.6 0.9 33 761-793 3-40 (70)
153 PF10497 zf-4CXXC_R1: Zinc-fin 20.6 66 0.0014 31.1 2.0 60 649-716 8-82 (105)
154 PF10367 Vps39_2: Vacuolar sor 20.1 46 0.001 31.4 0.9 31 761-792 79-109 (109)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.6e-62 Score=601.38 Aligned_cols=728 Identities=26% Similarity=0.364 Sum_probs=499.3
Q ss_pred CCCccccccCcccccceeeccCCCCCCCccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEE
Q 001263 213 SNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKF 292 (1112)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~ 292 (1112)
-......+..+.++.|........+.+...+......||.++.| ..+...+-.++........+....
T Consensus 256 m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1005)
T KOG1080|consen 256 MERPFSRPVRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKD------------VDDAHLITGDSSATDSALSEGGPS 323 (1005)
T ss_pred cccccchhhhhccccccccccCccchhHHHHHhhcccccccccc------------ccchhhhcCCCccchhhhhccccc
Confidence 33456667888888899989999999999999999999999998 334445556677777777777777
Q ss_pred EecchhhhhhhhcccccCCCCCCCCchhHHhhhcccccCCCCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCC
Q 001263 293 YISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGG 372 (1112)
Q Consensus 293 ~~~~~e~~~l~~~~~~~~~~~~~~~~de~~~~a~~~~~~~~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~ 372 (1112)
..+..++...+-.+..++..++..+.++...++.....+..|+.-+..|+...| -.|+|+++.+...+......
T Consensus 324 ~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~l~~k~~~~~~~s~~~~g~----- 397 (1005)
T KOG1080|consen 324 SFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPA-QGLLCKECSDETKSNQTCGI----- 397 (1005)
T ss_pred cccccccccccCCccccccccCCCccccccccccccCCCCchhhccccCccccc-chhhhhhhhchhhccccccc-----
Confidence 788888888888889999999999999999999999999999999999999999 88999998864433311111
Q ss_pred CcEEEEEeCCCC--EEEeeCCCcccccccccccccccCChHHHHHHHHHHHHHHHhCCChhHHhhhhhccccccccCccc
Q 001263 373 RSIPVQFFGTHD--FARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENSWS 450 (1112)
Q Consensus 373 ~~~~V~FFG~~~--~awv~~~~l~~f~~~~~~~~~~k~k~~~f~~Al~Ea~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 450 (1112)
+++-+.+. -.|+...-..++... .. .+ ..+..
T Consensus 398 ----~~~~~~~~~~~d~~~~~~c~~~~~~-------------------------~~--~~-----------~~~~~---- 431 (1005)
T KOG1080|consen 398 ----CKRIWHSSDSGDWVRCDGCDVWIHA-------------------------RC--DK-----------ISSEK---- 431 (1005)
T ss_pred ----cceecccccccceeeecccccceee-------------------------cc--Cc-----------ccccc----
Confidence 22222222 234333333333221 00 00 00000
Q ss_pred ccCCCCCCCCCcccccccccccCCCCCCCeeecccccccccceeeCCCcccccceeecCCeEEEeeeccccCCCCcceee
Q 001263 451 QDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYK 530 (1112)
Q Consensus 451 e~e~~~~s~ed~~~d~~~~~~l~~~~~~P~~~g~l~i~slG~Iv~d~~~fh~~~~IyP~Gy~s~R~~~S~~dp~~~~~Y~ 530 (1112)
...... ...-.....+|...+.+.+. |+-.....+-..+....
T Consensus 432 -----~~~~s~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~d~~s~~~~--- 474 (1005)
T KOG1080|consen 432 -----FKYSSS-------GMHNYQTLNFPQEYTALNLS----------------------YCPKCKLTFDDLSTDLS--- 474 (1005)
T ss_pred -----cccccc-------cccccccccchhhhhhhhcc----------------------ccchhheecccccccCC---
Confidence 000000 00001112222222221111 11111111111000000
Q ss_pred EEEEecCCCCCcceEEEEcCCCCcccCCCchhHHHHHHHHHHhhcCCCCCccccccccccccccCccccCCCChhHHHHh
Q 001263 531 MEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLI 610 (1112)
Q Consensus 531 ~eIl~~~~~~~~P~F~Vt~ed~~~~~g~Sps~~W~~v~k~ik~~~~~~~d~~~~~~~~~~~~~sG~~~FGls~P~V~klI 610 (1112)
. +. .+..+-..++..+|.+..+...+.+..+...... -.++......+|++..+.....+
T Consensus 475 --------~---~~------~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~---~~~~~~~~~~l~~~~~~~~~~~~ 534 (1005)
T KOG1080|consen 475 --------P---AA------LARVFHMLRYSVKKKKFLSEWERHTGATAKIWKD---SSRVKDELLPLPKWVESRGRSIM 534 (1005)
T ss_pred --------c---ch------heeeecccCcchhhhhcccchhhhhccccccccc---ccccccccccchhhhhhcccccc
Confidence 0 11 1223445556666776666665555544322111 11122345556666666555455
Q ss_pred hccCCCCCCCccccccccc-ccCCCCCCCcCCcccccCcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCC
Q 001263 611 LGLTKSRPTSKSSLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGV 689 (1112)
Q Consensus 611 qsLp~a~~~~k~~~~k~~s-~~~~lp~g~~~~~~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~ 689 (1112)
.........++...++-.. +.+..+..+......|.+.+.|.+|...+.+..|.++.|+.|++.+|+.|||...++.+.
T Consensus 535 ~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~ 614 (1005)
T KOG1080|consen 535 NTYNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGT 614 (1005)
T ss_pred ccccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeeccccccCCCcccccCCCCCCC
Confidence 5554444444433332221 334445556777777777799999999999999999999999999999999999888888
Q ss_pred ceecccccCCCCCCCCCcccCCCCCCCceecCCCceeeeeccccccceEecCCCCCccccccccccccccCccceeecCc
Q 001263 690 LWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVS 769 (1112)
Q Consensus 690 ~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~ 769 (1112)
.|+|+.|... .....|++|+.+||||++++.|.|+|+.||.|.|++.+.++..|+|+.++..++...+...|.+
T Consensus 615 ~~~~~~~~~~--~~~r~~~l~~~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~---- 688 (1005)
T KOG1080|consen 615 SWVCDSCETL--DIKRSCCLCPVKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI---- 688 (1005)
T ss_pred cchhhccccc--cCCchhhhccccCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----
Confidence 9999999964 4467899999999999999999999999999999999999999999999999999998888888
Q ss_pred CceeeecCCCCCCccccccchhhcCceEEeecccc----------------ccccccCCcccccccceeeccccCccccc
Q 001263 770 YGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDR----------------LNLLSLDEDDEDQCIRLLSFCKKHKQPLN 833 (1112)
Q Consensus 770 ~Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~~~~~----------------~~~~~~~~~~~~~~~~~~~~C~~H~~~~~ 833 (1112)
.|.|.||. .|...||.+||..+|+.++...-.. ..++.++....+...+..++|.+|+....
T Consensus 689 ~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~g~ 766 (1005)
T KOG1080|consen 689 HGSCRQCC--KCETGSHAMCASRAGYIMEAVSLEEVSQQTTSYVKEDGPGPDSVLKVNTPSGKFGAENLSQNKKSRTDGV 766 (1005)
T ss_pred cccccccc--hhhhcceehhhcCccChhhhhhhhhhhhhhhhhhhhccCCcccceeecCccccccccchhhhhhcccccc
Confidence 67899998 8999999999999998764331110 01122222222333334445555543321
Q ss_pred cchhhhccchhhcccccCCCCCCCCCCccccCcccccc--cCCCCChhHHHHhhcccccccCCCcccCCcccCCCCCCCC
Q 001263 834 DRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFG--RRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTL 911 (1112)
Q Consensus 834 ~r~~~e~rl~~~~~~~~~~~p~~NpsGCARsEpy~~~~--Rr~~k~p~~~aaa~~k~~~~~~~~~~~~~~~~~~~~g~~~ 911 (1112)
... +.. .++.+ .+.-|+|.+|++... ...+..+...+-+..+++..+..++..++..++.+....
T Consensus 767 ~~~-~~~---------~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~- 833 (1005)
T KOG1080|consen 767 RLV-LTY---------KEYAP--LREIKSRAEPLNRIDFSSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEE- 833 (1005)
T ss_pred ccc-ccc---------ccccc--cccchhcccCCcccCccccccccchhhcccccccccccccccccccccccchhHHh-
Confidence 111 000 01111 123356666665321 112223333455556677777777777766666543111
Q ss_pred CcccccCcccccccCCCCCCcCChhhhhHHhhhcccce-EEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhh
Q 001263 912 PSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKR-LAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRR 990 (1112)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r 990 (1112)
...+...+ +.-..+.....+...+.++..++++ |.|++|.||||||||+++|.+|+||+||+||+|++..|+.|
T Consensus 834 ---rl~q~rl~--a~~~~~~~~~~~~~~~~~~~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~R 908 (1005)
T KOG1080|consen 834 ---RLNQFRLS--ASFTASFILDEAEVLRYNQLKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLR 908 (1005)
T ss_pred ---hhHHHHhh--hhcccccccchHHHHHHHHHhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHH
Confidence 11111111 1112234466777888888877755 99999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCcceeEeecCcceecccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 001263 991 EHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSI 1070 (1112)
Q Consensus 991 ~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~ 1070 (1112)
+.+ |......++|+|+++++.|||||+.||+||||||||+|||+++++.|+|..+|+|||.|+|.+||||||||.|+.+
T Consensus 909 E~~-Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e 987 (1005)
T KOG1080|consen 909 EAR-YERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTE 987 (1005)
T ss_pred HHH-HhccCcccceeeecccceEEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccc
Confidence 975 7776668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCCCCccccC
Q 001263 1071 DEQLACYCGFPRCRGVVN 1088 (1112)
Q Consensus 1071 ~~~~~C~Cgs~~Crg~~~ 1088 (1112)
+.+++|+|||++|||+||
T Consensus 988 ~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 988 DDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred ccccccccCCCccccccC
Confidence 999999999999999997
No 2
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=364.16 Aligned_cols=313 Identities=30% Similarity=0.609 Sum_probs=224.2
Q ss_pred CCCCCCCeeecccccccccceeeCCCcccccceeecCCeEE-----EeeeccccCC-CCcceeeEEEEecCCCCCcceEE
Q 001263 473 GSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTA-----VRKFTSLADP-RVCNSYKMEVLRDTESKIRPLFR 546 (1112)
Q Consensus 473 ~~~~~~P~~~g~l~i~slG~Iv~d~~~fh~~~~IyP~Gy~s-----~R~~~S~~dp-~~~~~Y~~eIl~~~~~~~~P~F~ 546 (1112)
.+....|-++..-.+++.+++.+....-.+++++|+.-++- .+...|.... .-.++|..+=+.-.....+|+-.
T Consensus 103 ~~adkkpkel~Rqdli~amkl~dse~~~p~~y~~~~D~wk~ewekgvQvpaspd~lpqp~v~~dse~v~~~~~fs~pkky 182 (893)
T KOG0954|consen 103 RGADKKPKELYRQDLISAMKLPDSEHLNPDEYLDFADPWKQEWEKGVQVPASPDTLPQPSVRVDSEDVQPETDFSRPKKY 182 (893)
T ss_pred cccccchHHHHHhhhhhhccCccccccCccceeecCCccchhhhccccccCCCCcCCCcceeccchhcchhhhhcCCcce
Confidence 45677788888777888887765433333677776665542 2222222221 22233333333212222457766
Q ss_pred EEcCCCCc------------------ccCCCchhHHHHHHHHHHhhcCCCCCccccccccccccccCccccCCCChhHHH
Q 001263 547 VTLDNGEQ------------------FTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMK 608 (1112)
Q Consensus 547 Vt~ed~~~------------------~~g~Sps~~W~~v~k~ik~~~~~~~d~~~~~~~~~~~~~sG~~~FGls~P~V~k 608 (1112)
|...+++. ++-+--+.+|...++. ....+| +|-+-.-++.+
T Consensus 183 ivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~-------------------e~~~~G--~~~l~~~~~eR 241 (893)
T KOG0954|consen 183 IVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNE-------------------ERAEMG--SLELDEGTFER 241 (893)
T ss_pred EEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcc-------------------hHHhhC--CcccchHHHHH
Confidence 66655431 1122234455444431 112233 34455566777
Q ss_pred HhhccCCCCCCCcccccccccccCCCCCCCcCCcccccCcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCC
Q 001263 609 LILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNG 688 (1112)
Q Consensus 609 lIqsLp~a~~~~k~~~~k~~s~~~~lp~g~~~~~~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~ 688 (1112)
+|++|..-.. + +.. ....+.+| +.+.++++..|+||..+++++.|+||+||.|++.|||.|||+..+|++
T Consensus 242 iieelE~~c~--k---qi~--~~l~~eeg---lgie~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~g 311 (893)
T KOG0954|consen 242 IIEELERRCK--K---QIN--HALETEEG---LGIEYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEG 311 (893)
T ss_pred HHHHHHHHHH--H---HHH--hhhhhccc---ceeeccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCC
Confidence 8888854221 1 111 11222222 445567889999999999999999999999999999999999999987
Q ss_pred CceecccccCCCCCCCCCcccCCCCCCCceecCCC-ceeeeeccccccceEecCCCCCccccccccccccccCccceeec
Q 001263 689 VLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDG-RWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICG 767 (1112)
Q Consensus 689 ~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g-~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~ 767 (1112)
+|+|..|..+ ..+.|+|||.+|||||++..| +|+|++||||+||++|.++..|+||..+..|+..||.+.|.+|+
T Consensus 312 -pWlCr~Calg---~~ppCvLCPkkGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk 387 (893)
T KOG0954|consen 312 -PWLCRTCALG---IEPPCVLCPKKGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCK 387 (893)
T ss_pred -Ceeehhcccc---CCCCeeeccccCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhc
Confidence 9999999987 457999999999999999866 79999999999999999999999999999999999999999999
Q ss_pred CcCceeeecCCCCCCccccccchhhcCceEEeeccccccccccCCcccccccceeeccccCcccc
Q 001263 768 VSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPL 832 (1112)
Q Consensus 768 ~~~Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~C~~H~~~~ 832 (1112)
...||||||+...|.++||++||+.+|+.|.+.... ...+.+.+||.+|....
T Consensus 388 ~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~------------~D~v~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 388 VKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKE------------NDEVKFKSYCSKHSDHR 440 (893)
T ss_pred ccCcceEEecccchhhhccchhhhhcCCeeeeeecc------------CCchhheeecccccccc
Confidence 999999999999999999999999999998766321 12257889999998644
No 3
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=100.00 E-value=8.7e-38 Score=357.14 Aligned_cols=168 Identities=37% Similarity=0.829 Sum_probs=153.3
Q ss_pred ccccccCCcccCCCeeEEccC--CCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCceee
Q 001263 650 KCSVCHMDEEYQNNLFLQCDK--CRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAH 727 (1112)
Q Consensus 650 ~C~VC~~~~~~~~n~ll~Cd~--C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvH 727 (1112)
-|+||-....|..|+||+||+ |.++|||.||||..+|.| +|||+.|+.......+.|.|||.+.||||+|++|.|+|
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtG-pWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTG-PWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCC-chhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 699999888899999999997 999999999999999999 99999999876555689999999999999999999999
Q ss_pred eeccccccceEecCCCCCccccccccccccccCccceeecC-------cCceeeecCCCCCCccccccchhhcCceEEee
Q 001263 728 LACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGV-------SYGACIQCSNTTCRVAYHPLCARAAGLCVELE 800 (1112)
Q Consensus 728 v~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~-------~~Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~ 800 (1112)
|+|||+|||+.|.|+..||||. +..+|.+|++..|+||.. ..|+||+|+...|+++||++||+++||++|.+
T Consensus 86 VVCALYIPEVrFgNV~TMEPIi-Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~ 164 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPII-LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEE 164 (900)
T ss_pred EEEEeeccceeeccccccccee-eccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecc
Confidence 9999999999999999999998 999999999999999975 47999999999999999999999999999866
Q ss_pred ccccccccccCCcccccccceeeccccCccc
Q 001263 801 DEDRLNLLSLDEDDEDQCIRLLSFCKKHKQP 831 (1112)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~C~~H~~~ 831 (1112)
.. ...++++-.||+.|...
T Consensus 165 gn------------~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 165 GN------------ISDNVKYCGYCKYHFSK 183 (900)
T ss_pred cc------------ccccceechhHHHHHHH
Confidence 32 12346677899999753
No 4
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-36 Score=347.72 Aligned_cols=160 Identities=28% Similarity=0.491 Sum_probs=150.7
Q ss_pred CChhhhhHHhhhcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcc
Q 001263 933 LSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDER 1012 (1112)
Q Consensus 933 ~~~~~~~~~l~~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~ 1012 (1112)
+-..|+|+..|+.....+.|+.+..+||||.|.++|++|+||+||+||||+..+++.|... |+.....+.|+|.+....
T Consensus 105 cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~-Y~~d~~kh~Yfm~L~~~e 183 (729)
T KOG4442|consen 105 CGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKR-YAKDGIKHYYFMALQGGE 183 (729)
T ss_pred ccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHH-HHhcCCceEEEEEecCCc
Confidence 3457899999998889999999999999999999999999999999999999999999985 877777889999999999
Q ss_pred eecccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC-CCeeeecCCCCCccccCCCh
Q 001263 1013 VIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID-EQLACYCGFPRCRGVVNDTE 1091 (1112)
Q Consensus 1013 ~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~-~~~~C~Cgs~~Crg~~~~~~ 1091 (1112)
+||||.+||+||||||||+|||+++.|.|.+..||+|||.|.|.+||||||||+|...+ +..+|+||+++|+|||++..
T Consensus 184 ~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk~ 263 (729)
T KOG4442|consen 184 YIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGKP 263 (729)
T ss_pred eecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998877 68899999999999999985
Q ss_pred HH
Q 001263 1092 AE 1093 (1112)
Q Consensus 1092 ~e 1093 (1112)
.+
T Consensus 264 q~ 265 (729)
T KOG4442|consen 264 QT 265 (729)
T ss_pred cc
Confidence 54
No 5
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-36 Score=331.22 Aligned_cols=187 Identities=36% Similarity=0.705 Sum_probs=165.4
Q ss_pred CcCCcccccCcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCCCCc
Q 001263 638 YRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAM 717 (1112)
Q Consensus 638 ~~~~~~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGal 717 (1112)
++|++++.+-++.|.+|.+.+.++.|.||+||+|+++|||.|||+.-+|+| .|+|+.|..+.. ...-|.+||.+.||+
T Consensus 183 vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG-~WlCrkCi~~~~-~i~~C~fCps~dGaF 260 (669)
T COG5141 183 VEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEG-FWLCRKCIYGEY-QIRCCSFCPSSDGAF 260 (669)
T ss_pred ccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcc-hhhhhhhccccc-ceeEEEeccCCCCce
Confidence 777777766678999999999888899999999999999999999999998 999999998654 334599999999999
Q ss_pred eecCCCceeeeeccccccceEecCCCCCccccccccccccccCccceeecCcCceeeecCCCCCCccccccchhhcCceE
Q 001263 718 KPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCV 797 (1112)
Q Consensus 718 K~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~~Ga~iqC~~~~C~~~FH~~CA~~aG~~~ 797 (1112)
|+|.+|.|+|++||+|+||+.|.+...|+||+|+..++..||++.|+||+...|+||||+..+|.++||++||++||+.+
T Consensus 261 kqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~ 340 (669)
T COG5141 261 KQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFD 340 (669)
T ss_pred eeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred EeeccccccccccCCcccccccceeeccccCccccccc
Q 001263 798 ELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDR 835 (1112)
Q Consensus 798 e~~~~~~~~~~~~~~~~~~~~~~~~~~C~~H~~~~~~r 835 (1112)
.-. ..-++..+++..-.||.+|.++...+
T Consensus 341 ~~~---------~s~n~~s~~id~e~~c~kh~p~gy~~ 369 (669)
T COG5141 341 LNI---------YSHNGISYCIDHEPLCRKHYPLGYGR 369 (669)
T ss_pred hhh---------hcccccceeecchhhhcCCCCcchhc
Confidence 311 11122345666778999999876544
No 6
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=355.64 Aligned_cols=179 Identities=41% Similarity=0.899 Sum_probs=159.5
Q ss_pred cCcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCce
Q 001263 646 KDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRW 725 (1112)
Q Consensus 646 ~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~W 725 (1112)
+.+.+|+||...+..+.|.||+||+|+++|||.|||+..+|+| .|+|+.|..... ..+.|.+||.++||||+|.+|+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg-~WlCr~Cl~s~~-~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEG-QWLCRRCLQSPQ-RPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCC-cEeehhhccCcC-cccceEeccCCCCcceeccCCce
Confidence 4557999999999988999999999999999999999888988 999999997543 34799999999999999999999
Q ss_pred eeeeccccccceEecCCCCCccccccccccccccCccceeecCcC-ceeeecCCCCCCccccccchhhcCceEEeecccc
Q 001263 726 AHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSY-GACIQCSNTTCRVAYHPLCARAAGLCVELEDEDR 804 (1112)
Q Consensus 726 vHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~~-Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~~~~~ 804 (1112)
+|++||+|+||+.|.+...++||.++..|+..||++.|++|++.. |+||||+..+|.++||++||+++|++|.+....
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~~- 373 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTVK- 373 (1051)
T ss_pred eeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeecccc-
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999999854211
Q ss_pred ccccccCCcccccccceeeccccCccc
Q 001263 805 LNLLSLDEDDEDQCIRLLSFCKKHKQP 831 (1112)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~C~~H~~~ 831 (1112)
........+.++..+||++|.++
T Consensus 374 ----~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 374 ----ELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred ----cccccccccccceeeeccCCCCc
Confidence 11111223446789999999998
No 7
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=4.5e-30 Score=296.34 Aligned_cols=178 Identities=31% Similarity=0.541 Sum_probs=153.9
Q ss_pred cccCCCcccCCcccCCCCCCCCC--cccccCcccccccCCCCC-----------CcCChhhhhHHhhhcccceEEEEEec
Q 001263 890 FVENQPYLVGGYCQNGLSGNTLP--SIRVIGSKFSFSLHRDAP-----------NFLSMADKYKHMKETFRKRLAFGKSG 956 (1112)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~l~v~~S~ 956 (1112)
|.+.. +.|...|+++|+||.|. |.+.|+.|+...++++.. +.....|+|..|+++.++++.+++|.
T Consensus 524 ~CEk~-C~C~~dC~nrF~GC~Ck~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSd 602 (739)
T KOG1079|consen 524 FCEKF-CYCSPDCRNRFPGCRCKAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSD 602 (739)
T ss_pred chhhc-ccCCHHHHhcCCCCCcccccccCcCchhhhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhh
Confidence 44433 23778899999999775 556667777655544311 11234899999999999999999999
Q ss_pred ccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcceecccccCCccccCCCCCCCCceE
Q 001263 957 IHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYS 1036 (1112)
Q Consensus 957 ~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~ 1036 (1112)
+.|||||+++.+.+++||.||+||+|++.|||+|.. +|+.. ..+|+|.++.+++|||++.||.+||+|||-+|||++
T Consensus 603 VaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGk-iYDr~--~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYA 679 (739)
T KOG1079|consen 603 VAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGK-IYDRY--MCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYA 679 (739)
T ss_pred ccccceeeccccCCCceeeeecceeccchhhhhccc-ccccc--cceeeeeccccceEeeeeecchhhhccCCCCCCcEE
Confidence 999999999999999999999999999999999998 57754 479999999999999999999999999999999999
Q ss_pred EEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC
Q 001263 1037 RVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID 1071 (1112)
Q Consensus 1037 ~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~ 1071 (1112)
.++.|+|.++|+|||+|+|.+||||||||++.-+.
T Consensus 680 kvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~ 714 (739)
T KOG1079|consen 680 KVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEH 714 (739)
T ss_pred EEEEecCCcceeeeehhhcccCceeeeeeccCccc
Confidence 99999999999999999999999999999986543
No 8
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.95 E-value=5.7e-29 Score=276.37 Aligned_cols=170 Identities=34% Similarity=0.722 Sum_probs=146.0
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCc---CCCCC------CceecccccCCCCCCCCCcccCCCCCCCce
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL---EPVNG------VLWLCNLCRPGAPEPPPPCCLCPVVGGAMK 718 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~---~~~~~------~~W~C~~C~~~~~~~~~~C~LC~~~gGalK 718 (1112)
...|+||....+.+-++||+||+||+.||..|||+. .++.+ ++|||+.|.++.. .+.|.|||.++|++|
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs--~P~CElCPn~~GifK 196 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS--LPHCELCPNRFGIFK 196 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC--CCccccCCCcCCccc
Confidence 348999999888888999999999999999999975 12222 4799999999876 489999999999999
Q ss_pred ecCCCceeeeeccccccceEecCCCCCcccccccccccccc-CccceeecC----cCceeeecCCCCCCccccccchhhc
Q 001263 719 PTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRW-KLLCSICGV----SYGACIQCSNTTCRVAYHPLCARAA 793 (1112)
Q Consensus 719 ~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~-~~~C~iC~~----~~Ga~iqC~~~~C~~~FH~~CA~~a 793 (1112)
.|+-|+|||++|||++|++-|.++..+.+|. +..+....| ...|++|.. ..|.||.|..+.|..+||++||+.+
T Consensus 197 etDigrWvH~iCALYvpGVafg~~~~l~~Vt-l~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~ 275 (707)
T KOG0957|consen 197 ETDIGRWVHAICALYVPGVAFGQTHTLCGVT-LEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKL 275 (707)
T ss_pred ccchhhHHHHHHHhhcCcccccccccccccc-HHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhh
Confidence 9999999999999999999999999999987 555555544 468999986 5899999999999999999999999
Q ss_pred CceEEeeccccccccccCCcccccccceeeccccCcccc
Q 001263 794 GLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPL 832 (1112)
Q Consensus 794 G~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~C~~H~~~~ 832 (1112)
||+++...++. .-..+++||++|....
T Consensus 276 GlLvea~~e~D------------iAdpfya~CK~Ht~r~ 302 (707)
T KOG0957|consen 276 GLLVEATDEND------------IADPFYAFCKKHTNRD 302 (707)
T ss_pred cceeecccccc------------chhhHHHHHHhhcchh
Confidence 99988765533 2346889999999754
No 9
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.89 E-value=1.2e-23 Score=202.97 Aligned_cols=109 Identities=50% Similarity=1.122 Sum_probs=101.9
Q ss_pred CcccCCCCCCCceecCCCceeeeeccccccceEecCCCCCccccccccccccccCccceeecCcCceeeecCCCCCCccc
Q 001263 706 PCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAY 785 (1112)
Q Consensus 706 ~C~LC~~~gGalK~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~~Ga~iqC~~~~C~~~F 785 (1112)
.|+|||.+|||||+|.++.|||++||+|+|++.|.+...|+++. +..++..++++.|.+|++..|++|+|..++|.++|
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~f 80 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTAF 80 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCCCceeEEcCCCCCCcCC
Confidence 69999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccchhhcCceEEeeccccccccccCCcccccccceeeccccC
Q 001263 786 HPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKH 828 (1112)
Q Consensus 786 H~~CA~~aG~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~C~~H 828 (1112)
||+||+.+|++++++..+. ...+.+||++|
T Consensus 81 H~~CA~~~g~~~~~~~~~~-------------~~~~~~~C~~H 110 (110)
T PF13832_consen 81 HPTCARKAGLYFEIENEED-------------NVQFIAYCPKH 110 (110)
T ss_pred CHHHHHHCCCeEEeeecCC-------------CceEEEECCCC
Confidence 9999999999998875422 35689999999
No 10
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.87 E-value=1.6e-22 Score=183.97 Aligned_cols=81 Identities=27% Similarity=0.515 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccCChHH
Q 001263 333 ELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPR 412 (1112)
Q Consensus 333 ~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~k~~~ 412 (1112)
+|++||||||||+|||||||+|++++.. ....+.|+|+|||++++|||+.++|+||.++ ..++..+++++.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~--------~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~-~~~~~~~~k~k~ 72 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDW--------KPPGKKYPVYFFGTHETAFLKPEDLFPYTEN-KKKFGKPKKRKG 72 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEeccccc--------CCCCCEEEEEEeCCCCEeEECHHHceecccc-hhhhccccchHH
Confidence 6999999999999999999999997653 2345779999999999999999999999997 777888899999
Q ss_pred HHHHHHHHHH
Q 001263 413 FTQSLEEAKV 422 (1112)
Q Consensus 413 f~~Al~Ea~~ 422 (1112)
|++||+|+++
T Consensus 73 F~~Av~eie~ 82 (83)
T cd05834 73 FNEAVWEIEK 82 (83)
T ss_pred HHHHHHHHhh
Confidence 9999999975
No 11
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1.5e-22 Score=234.39 Aligned_cols=158 Identities=30% Similarity=0.435 Sum_probs=128.1
Q ss_pred ChhhhhHHhhhcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHh-hhcccCCccee-------
Q 001263 934 SMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFI-YNSLVGAGTYM------- 1005 (1112)
Q Consensus 934 ~~~~~~~~l~~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~-y~~~~~~~~y~------- 1005 (1112)
...|.|+.+|.+++.+|+|.+++.+||||.+.+.|++|+||+||+||+++..+++.+.... |........+.
T Consensus 162 ~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
T KOG1082|consen 162 HPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVD 241 (364)
T ss_pred CCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhccccc
Confidence 4567899999999999999999999999999999999999999999999999998774211 11100011111
Q ss_pred --------------EeecCcceecccccCCccccCCCCCCCCceEEEEEECCe----eEEEEEEccCCCCCCeEEEecCC
Q 001263 1006 --------------FRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGD----EHIIIFAKRDIKQWEELTYDYRF 1067 (1112)
Q Consensus 1006 --------------f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~----~~i~i~A~RdI~~GEELT~dY~~ 1067 (1112)
......+.|||...||++|||||||.||+.+..+..++. .+|+|||+++|.+||||||||+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 242 ESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred cccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 122467799999999999999999999999888877633 58999999999999999999996
Q ss_pred CCC------------CCCeeeecCCCCCccccCCCh
Q 001263 1068 FSI------------DEQLACYCGFPRCRGVVNDTE 1091 (1112)
Q Consensus 1068 ~~~------------~~~~~C~Cgs~~Crg~~~~~~ 1091 (1112)
... ..+..|.||+.+||+.+....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~ 357 (364)
T KOG1082|consen 322 AYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAP 357 (364)
T ss_pred cccccccccccccccccchhhcCCCHHhCcccCCCc
Confidence 532 246789999999999886543
No 12
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=3.4e-22 Score=183.16 Aligned_cols=86 Identities=24% Similarity=0.458 Sum_probs=73.5
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccCChHHH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRF 413 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~k~~~f 413 (1112)
|++||||||||+|||||||+|+++.... .+.+.+.+.|+|+|||++++|||..++|+||.++ .+.+...+|.+.|
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~----~~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF~~~-~~~~~~~~k~~~F 75 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDL----KKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEH-KEEMIKLNKGARF 75 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhc----ccccCCCCeEEEEEeCCCCEEEECHHhCeechhh-HHHHhcccchHHH
Confidence 7899999999999999999999865321 1222335889999999999999999999999997 7777778899999
Q ss_pred HHHHHHHHHHH
Q 001263 414 TQSLEEAKVYL 424 (1112)
Q Consensus 414 ~~Al~Ea~~~~ 424 (1112)
++||+|+++++
T Consensus 76 ~~Av~~ie~~~ 86 (86)
T cd05836 76 QQAVDAIEEYI 86 (86)
T ss_pred HHHHHHHHHhC
Confidence 99999999873
No 13
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.85 E-value=5.3e-21 Score=184.36 Aligned_cols=115 Identities=45% Similarity=0.712 Sum_probs=100.4
Q ss_pred EEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcceecccccCCccccCCCC
Q 001263 950 LAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHS 1029 (1112)
Q Consensus 950 l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHS 1029 (1112)
+.+.+++.+|+||||+++|++|++|++|.|.++....+..+... +........|+|......+||+...||++||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHs 80 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKA-YDTDGADSFYLFEIDSDLCIDARRKGNIARFINHS 80 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHH-HHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCC
Confidence 56677789999999999999999999999999998887776542 33222225789998888999999999999999999
Q ss_pred CCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEec
Q 001263 1030 CEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDY 1065 (1112)
Q Consensus 1030 C~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY 1065 (1112)
|.|||.......++..+|.|+|+|||++|||||+||
T Consensus 81 c~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 81 CEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 999999998888877799999999999999999999
No 14
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.84 E-value=2.7e-21 Score=180.70 Aligned_cols=92 Identities=29% Similarity=0.404 Sum_probs=74.5
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCccccccccccccc--ccCChH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFH--LKCKKP 411 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~--~k~k~~ 411 (1112)
+.+||||||||+|||||||+|+++..++. +....++..+.|+|+|||+++|+||.+++|+||.++...... ++++.+
T Consensus 1 ~~~GdlVWaK~~g~pwWPa~V~~~~~~p~-~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~~~~~~~~~~~~~~ 79 (95)
T cd05838 1 PLYGDIVWAKLGNFRWWPAIICDPREVPP-NIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGDKGFKEQTKSYLAK 79 (95)
T ss_pred CCcCCEEEEECCCCCCCCeEEcChhhcCh-hHhhccCCCCeEEEEEeCCCCEEEeccccccchhhhhhhhhhhhhhhhHH
Confidence 35799999999999999999999887765 233334455889999999999999999999999987433222 235679
Q ss_pred HHHHHHHHHHHHHHh
Q 001263 412 RFTQSLEEAKVYLSE 426 (1112)
Q Consensus 412 ~f~~Al~Ea~~~~~~ 426 (1112)
.|++||+||.++++.
T Consensus 80 ~f~~AleEA~~~~~~ 94 (95)
T cd05838 80 RFRKALEEASLAFKG 94 (95)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988753
No 15
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.83 E-value=1.7e-21 Score=232.98 Aligned_cols=134 Identities=35% Similarity=0.558 Sum_probs=119.3
Q ss_pred hhhHHhh-hcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcceec
Q 001263 937 DKYKHMK-ETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVID 1015 (1112)
Q Consensus 937 ~~~~~l~-~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~~ID 1015 (1112)
|+|+.|+ .+....|.+.+.+..||||.|.++|++||||+||+|+||...+++.+..-+|. .....|...++...+||
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~--~d~~~~cL~I~p~l~id 1243 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYH--NDDDHYCLVIDPGLFID 1243 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCC--CCCcccccccCccccCC
Confidence 6666555 46678999999999999999999999999999999999999888777433343 23468999999999999
Q ss_pred ccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCCC
Q 001263 1016 ATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDE 1072 (1112)
Q Consensus 1016 a~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~~ 1072 (1112)
+.++||.+|||||||.|||.++.|.|+|..||+|||+|||.+||||||||+|...+.
T Consensus 1244 ~~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~~ 1300 (1306)
T KOG1083|consen 1244 IPRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFNY 1300 (1306)
T ss_pred hhhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccCC
Confidence 999999999999999999999999999999999999999999999999999876653
No 16
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.83 E-value=4.6e-21 Score=176.41 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCccccccccccc--ccccCChH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSS--FHLKCKKP 411 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~--~~~k~k~~ 411 (1112)
|.+||||||||+|||||||+|++++.... .....+.++|+|||++++|||.+++|+||.++ ... ...++|+.
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~-----~~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~-~~~f~~~~~~k~~ 74 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSK-----RPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEF-FKAFSRYNRKKKG 74 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhccc-----ccCCCCeEEEEEeCCCCEeEECHHHCcChhHh-HHHHhhhhhhhhH
Confidence 78999999999999999999999765443 13456889999999999999999999999997 555 34456779
Q ss_pred HHHHHHHHHHHH
Q 001263 412 RFTQSLEEAKVY 423 (1112)
Q Consensus 412 ~f~~Al~Ea~~~ 423 (1112)
.|++||+||++.
T Consensus 75 ~f~~Ai~eA~e~ 86 (87)
T cd05835 75 LYKKAIYEALEV 86 (87)
T ss_pred HHHHHHHHHHHc
Confidence 999999999874
No 17
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.82 E-value=6.8e-21 Score=176.85 Aligned_cols=87 Identities=32% Similarity=0.545 Sum_probs=74.0
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCcccc--ccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccC--C
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGL--NKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKC--K 409 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~--~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~--k 409 (1112)
|++||||||||+|||||||+|++++.++. ..+ +.+.+.+.|+|+|||+++||||.+++|+||+++.+..+.... |
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~-~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~~~~~~~~l~~~~~k 79 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPD-SVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLTEEKIAKFLKKPKRK 79 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCH-HHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCCHHHHHHHhhcCCCC
Confidence 78999999999999999999999988776 344 345567999999999999999999999999977677766654 5
Q ss_pred hHHHHHHHHHHH
Q 001263 410 KPRFTQSLEEAK 421 (1112)
Q Consensus 410 ~~~f~~Al~Ea~ 421 (1112)
.+.+.+|++.|.
T Consensus 80 ~k~l~~ay~~A~ 91 (93)
T cd05840 80 DKELIKAYKAAK 91 (93)
T ss_pred CHHHHHHHHHhc
Confidence 588888988875
No 18
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.82 E-value=1.5e-20 Score=173.76 Aligned_cols=86 Identities=30% Similarity=0.539 Sum_probs=74.5
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccCChHHH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRF 413 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~k~~~f 413 (1112)
|++|||||||++|||||||+|+++...+... ..+...+.|+|+|||+++++||..++|.||.++... ...++|++.|
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~--~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~-~~~~~k~~~f 77 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKA--KKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKES-EAKQSKRKGF 77 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhh--hccCCCCEEEEEEeCCCcEEEeCccceeeccchHHh-hccCCccHHH
Confidence 7899999999999999999999988776522 334566889999999999999999999999998444 6677888999
Q ss_pred HHHHHHHHH
Q 001263 414 TQSLEEAKV 422 (1112)
Q Consensus 414 ~~Al~Ea~~ 422 (1112)
++||+||.+
T Consensus 78 ~~A~~eA~~ 86 (87)
T cd05162 78 KKAYDEALE 86 (87)
T ss_pred HHHHHHHHh
Confidence 999999976
No 19
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.82 E-value=1.3e-20 Score=169.31 Aligned_cols=75 Identities=28% Similarity=0.582 Sum_probs=67.4
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeC-CCCEEEeeCCCcccccccccccccccCChHH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFG-THDFARINVKQVISFLKGLLSSFHLKCKKPR 412 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG-~~~~awv~~~~l~~f~~~~~~~~~~k~k~~~ 412 (1112)
++|||||||||+|||||||+|++++ ++.|+|+||| ++++|||+.++|+||+++ +.++.+++|++.
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~-------------~~~~~V~FFG~t~~~a~v~~~~i~~~~~~-~~~~~~~~k~~~ 72 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVE-------------DNQVDVRFFGGQHDRAWIPSNNIQPISTE-IPQQLVKKRSRG 72 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecC-------------CCeEEEEEcCCCCCeEEEehHHeeehhhh-hhhhccccccHH
Confidence 6899999999999999999998742 2569999999 999999999999999997 656777888899
Q ss_pred HHHHHHHHHH
Q 001263 413 FTQSLEEAKV 422 (1112)
Q Consensus 413 f~~Al~Ea~~ 422 (1112)
|++||+||+.
T Consensus 73 f~~A~~Eie~ 82 (83)
T cd05841 73 FNKAMDELEL 82 (83)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 20
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.79 E-value=3.6e-20 Score=170.66 Aligned_cols=84 Identities=32% Similarity=0.579 Sum_probs=71.9
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCccccccccccccccc--CChH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLK--CKKP 411 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k--~k~~ 411 (1112)
|++|||||||++|||||||+|+++..... .....+.++|+|||+++++||+.++|.||.+. ...+..+ ++++
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~-----~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~~-~~~~~~~~~~k~~ 74 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSK-----KKRKDGHVLVRFFGDNDYAWVKPSNIKPFSEF-KEKLKKKKKKKRK 74 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTS-----CSSSSTEEEEEETTTTEEEEEEGGGEEECCHH-HHHHHHHHHHHSH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccc-----cCCCCCEEEEEecCCCCEEEECHHHhhChhhh-HHHHHHhhccchH
Confidence 78999999999999999999999875444 35667889999999999999999999999954 6666665 5669
Q ss_pred HHHHHHHHHHHH
Q 001263 412 RFTQSLEEAKVY 423 (1112)
Q Consensus 412 ~f~~Al~Ea~~~ 423 (1112)
.|++||+||+++
T Consensus 75 ~~~~Ai~eA~~~ 86 (86)
T PF00855_consen 75 SFRKAIEEAEEA 86 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 21
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.76 E-value=7e-19 Score=152.22 Aligned_cols=63 Identities=33% Similarity=0.636 Sum_probs=55.5
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCccccc
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFL 397 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~ 397 (1112)
|++||||||||+|||||||+|++++..+. ...+.+...+.|+|+|||++++|||.+++|+||+
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~-~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPD-NIRKRKRFENLYPVLFFGDKDTAWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCCh-hHhhccCCCCEEEEEEeCCCCEEEECccceeeCC
Confidence 78999999999999999999999987765 3334456678999999999999999999999985
No 22
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.74 E-value=4.6e-18 Score=179.46 Aligned_cols=123 Identities=37% Similarity=0.514 Sum_probs=108.8
Q ss_pred ccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEee---cCcceecccc-cCC
Q 001263 946 FRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRI---DDERVIDATR-AGS 1021 (1112)
Q Consensus 946 ~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~---~~~~~IDa~~-~Gn 1021 (1112)
....+.+..-.++|.||.|+..+++|+||.||.|.+|.-.++..|+.. |......++|||-. +..++||||. .+-
T Consensus 254 ~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~-Ya~De~~GcYMYyF~h~sk~yCiDAT~et~~ 332 (392)
T KOG1085|consen 254 TNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQ-YANDEEIGCYMYYFEHNSKKYCIDATKETPW 332 (392)
T ss_pred cccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHH-hccCcccceEEEeeeccCeeeeeeccccccc
Confidence 345666777777999999999999999999999999999999999986 66656777887655 4678999998 556
Q ss_pred ccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCC
Q 001263 1022 IAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFS 1069 (1112)
Q Consensus 1022 ~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~ 1069 (1112)
+.|+||||-.+||...++.++|.+|++|+|.|||.+||||+|||+.-+
T Consensus 333 lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred chhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence 899999999999999999999999999999999999999999999643
No 23
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.72 E-value=7.6e-18 Score=161.89 Aligned_cols=90 Identities=26% Similarity=0.416 Sum_probs=65.5
Q ss_pred CCCCCcEEEEeccCcCCCCceeecCccccCccc-cccCCCCCcEEEEEeCCC-CEEEeeCCCccccccccccc-------
Q 001263 333 ELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKG-LNKISGGRSIPVQFFGTH-DFARINVKQVISFLKGLLSS------- 403 (1112)
Q Consensus 333 ~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~-~~~~~~~~~~~V~FFG~~-~~awv~~~~l~~f~~~~~~~------- 403 (1112)
.|.+||||||||+|||||||+|++++..+.... .......+.|+|+|||++ ++|||+.++|.||++.....
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~~~~~~~~~~~~~ 81 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKGSKQFESEKGEKF 81 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCCchhhhhhhhhhh
Confidence 589999999999999999999998766654221 123345688999999985 79999999999999752111
Q ss_pred -ccccCChHHHHHHHHHHHH
Q 001263 404 -FHLKCKKPRFTQSLEEAKV 422 (1112)
Q Consensus 404 -~~~k~k~~~f~~Al~Ea~~ 422 (1112)
..+++.++.+++|..+++.
T Consensus 82 ~~~K~~~~~~~~~a~~~~~~ 101 (110)
T cd05837 82 KVRKPNIKKARQKADIAIMQ 101 (110)
T ss_pred hccCCcchhHHHHHHHHHHH
Confidence 1222333566666666544
No 24
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.63 E-value=3e-16 Score=140.49 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=56.7
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCC-CEEEeeCCCcccccccccccccccCChHH
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTH-DFARINVKQVISFLKGLLSSFHLKCKKPR 412 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~-~~awv~~~~l~~f~~~~~~~~~~k~k~~~ 412 (1112)
|.+|||||||++|||||||+|.+... ..+.|+|+|||++ ++||+..++|+||.++ .+...+....+.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~-----------~~~k~~V~FfG~~~~~a~~~~~~l~p~~~~-~~~~ek~~~~~k 68 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISR-----------KKQKARVNFIGDNMQSEKKGIRVVKRWLKH-FDCTEKQKLTNK 68 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecC-----------CCCEEEEEEeCCCCceeccchhhccccccc-HHHHHHHHHHHH
Confidence 78999999999999999999987532 1567999999999 7999999999999997 333332222234
Q ss_pred HHHHHHHH
Q 001263 413 FTQSLEEA 420 (1112)
Q Consensus 413 f~~Al~Ea 420 (1112)
.++++++|
T Consensus 69 ~ke~~~~a 76 (80)
T cd06080 69 AKESYEQA 76 (80)
T ss_pred HHHHHHHH
Confidence 44444444
No 25
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.58 E-value=2e-15 Score=143.18 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=53.1
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCc---c-----------ccccCCCCCcEEEEEeCC-CCEEEeeCCCcccccc
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDY---K-----------GLNKISGGRSIPVQFFGT-HDFARINVKQVISFLK 398 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~---~-----------~~~~~~~~~~~~V~FFG~-~~~awv~~~~l~~f~~ 398 (1112)
+.||||||||++|||||||+|+++...... . .++.......|+|+||++ .+++||+.++|.||..
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~~Wv~~~~l~pl~~ 80 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTWQWLPGDKLEPLGV 80 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcceecCHHHCccccc
Confidence 479999999999999999999998753321 1 112344568899999998 5799999999999987
Q ss_pred c
Q 001263 399 G 399 (1112)
Q Consensus 399 ~ 399 (1112)
+
T Consensus 81 ~ 81 (111)
T cd05839 81 D 81 (111)
T ss_pred c
Confidence 5
No 26
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.57 E-value=4.5e-16 Score=187.16 Aligned_cols=140 Identities=40% Similarity=0.672 Sum_probs=117.7
Q ss_pred cceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecC-cceecccccCCcccc
Q 001263 947 RKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDD-ERVIDATRAGSIAHL 1025 (1112)
Q Consensus 947 ~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~-~~~IDa~~~Gn~aRf 1025 (1112)
.....+..+.++|+|+||.+.|++|++|++|.|++++..++..+.... .. .+....++.+.. ..++|+...|+.+||
T Consensus 331 ~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~d~~~~g~~~r~ 408 (480)
T COG2940 331 REPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENY-DL-LGNEFSFGLLEDKDKVRDSQKAGDVARF 408 (480)
T ss_pred cchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccc-cc-cccccchhhccccchhhhhhhcccccce
Confidence 455677888999999999999999999999999999999888888753 22 222233333333 789999999999999
Q ss_pred CCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC---------CCeeeecCCCCCccccC
Q 001263 1026 INHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID---------EQLACYCGFPRCRGVVN 1088 (1112)
Q Consensus 1026 INHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~---------~~~~C~Cgs~~Crg~~~ 1088 (1112)
|||||.|||.+....++|..++.++|+|||.+||||++||+...++ ..+.|.||++.|++.|+
T Consensus 409 ~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 409 INHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred eecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCCC
Confidence 9999999999998888777899999999999999999999886655 35799999999999874
No 27
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.51 E-value=8.4e-15 Score=171.71 Aligned_cols=76 Identities=34% Similarity=0.711 Sum_probs=68.5
Q ss_pred ceecccccCCccccCCCCCCCCceEEEEEECCe----eEEEEEEccCCCCCCeEEEecCCCCC---CCCeeeecCCCCCc
Q 001263 1012 RVIDATRAGSIAHLINHSCEPNCYSRVISVNGD----EHIIIFAKRDIKQWEELTYDYRFFSI---DEQLACYCGFPRCR 1084 (1112)
Q Consensus 1012 ~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~----~~i~i~A~RdI~~GEELT~dY~~~~~---~~~~~C~Cgs~~Cr 1084 (1112)
++|||...||+.||+||||+||+.++.+.++.. +-++|||.|-|+||+|||+||++... ...+.|.||+.+||
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 579999999999999999999999999998865 45899999999999999999998643 35789999999999
Q ss_pred ccc
Q 001263 1085 GVV 1087 (1112)
Q Consensus 1085 g~~ 1087 (1112)
|.|
T Consensus 1259 grL 1261 (1262)
T KOG1141|consen 1259 GRL 1261 (1262)
T ss_pred ccc
Confidence 976
No 28
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.51 E-value=5.8e-15 Score=137.32 Aligned_cols=88 Identities=38% Similarity=0.759 Sum_probs=78.8
Q ss_pred eeeccccccceEecCCCC--CccccccccccccccCccceeecCcCceeeecCCCCCCccccccchhhcCceEEeecccc
Q 001263 727 HLACAIWIPETCLTDVKR--MEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDR 804 (1112)
Q Consensus 727 Hv~Cal~~pe~~f~~~~~--~~pi~~i~~i~~~~~~~~C~iC~~~~Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~~~~~ 804 (1112)
|+.||+|+|++.+.+... +.++.++..+...++++.|.+|++..|++|+|..++|...||++||+.+|+.+++...
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~-- 78 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDED-- 78 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEccC--
Confidence 899999999999998764 6789999999999999999999998899999999999999999999999999876631
Q ss_pred ccccccCCcccccccceeeccccCc
Q 001263 805 LNLLSLDEDDEDQCIRLLSFCKKHK 829 (1112)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~C~~H~ 829 (1112)
...+.+||++|+
T Consensus 79 -------------~~~~~~~C~~H~ 90 (90)
T PF13771_consen 79 -------------NGKFRIFCPKHS 90 (90)
T ss_pred -------------CCceEEEChhcC
Confidence 135789999996
No 29
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.47 E-value=2e-14 Score=120.02 Aligned_cols=54 Identities=43% Similarity=0.746 Sum_probs=42.2
Q ss_pred ecccccccccceeeCCCcccccceeecCCeEEEeeeccccCCCCcceeeEEEEe
Q 001263 482 FGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLR 535 (1112)
Q Consensus 482 ~g~l~i~slG~Iv~d~~~fh~~~~IyP~Gy~s~R~~~S~~dp~~~~~Y~~eIl~ 535 (1112)
+|+|+|++||+|++++++||++++|||+||+++|.|+|+.||.+++.|+|+|+|
T Consensus 1 igsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 1 IGSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp -TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CCceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 589999999999999988999999999999999999999999999999999986
No 30
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=99.43 E-value=1.1e-13 Score=161.10 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccCCh
Q 001263 331 CQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKK 410 (1112)
Q Consensus 331 ~~~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~k~ 410 (1112)
...|++||||||||+|||.|||+|.+...... ++..+.|.|+||||+++|||.+++|+||..+ .+.+....++
T Consensus 10 ~~~~~~GDLV~AKlkgyp~WParI~~~~~~~~------kp~pkky~V~FfGT~e~Afl~p~dlqpy~~~-k~~~g~~~k~ 82 (496)
T KOG1904|consen 10 AGNFKCGDLVFAKLKGYPPWPARIRNGPDGAV------KPPPKKYTVFFFGTKETAFLKPKDLQPYMLN-KEKLGKPNKR 82 (496)
T ss_pred cCCCCCCceeeecccCCCCCcccccCcccccc------cCCCceeEEEEeccCcccccchhhccchhhh-hhhcccchhh
Confidence 34699999999999999999999988654433 2345669999999999999999999999998 8888888899
Q ss_pred --HHHHHHHHHHHHHHHhCC
Q 001263 411 --PRFTQSLEEAKVYLSEQK 428 (1112)
Q Consensus 411 --~~f~~Al~Ea~~~~~~~~ 428 (1112)
+.|.+||+++.+++....
T Consensus 83 ~~k~F~~av~eI~~a~~np~ 102 (496)
T KOG1904|consen 83 VWKGFIEAVEEIREAFNNPK 102 (496)
T ss_pred hhHHHHHHHHHHHHHhcCCC
Confidence 999999999999884443
No 31
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.38 E-value=5.7e-13 Score=134.81 Aligned_cols=108 Identities=26% Similarity=0.381 Sum_probs=74.5
Q ss_pred CeeEEecccCCCCCeEEEEceeecChhHHhhh---hHH------------------------------------hhh--c
Q 001263 959 GFGIFAKHPHRAGDMVIEYTGELVRPSIADRR---EHF------------------------------------IYN--S 997 (1112)
Q Consensus 959 G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r---~~~------------------------------------~y~--~ 997 (1112)
|+||||+++|++|++|++..+.+++....... ... ... .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999988877665431 000 000 0
Q ss_pred cc-------------CCcceeEeecCcceecccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEe
Q 001263 998 LV-------------GAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYD 1064 (1112)
Q Consensus 998 ~~-------------~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~d 1064 (1112)
.. ...............++.....++.|+||||.|||.+..........+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 00 00011112223334566677788999999999999998877778899999999999999999999
Q ss_pred cC
Q 001263 1065 YR 1066 (1112)
Q Consensus 1065 Y~ 1066 (1112)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 32
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.37 E-value=2.1e-13 Score=125.70 Aligned_cols=80 Identities=36% Similarity=0.583 Sum_probs=57.6
Q ss_pred cceEEEEcCC--CCcccCCCchhHHHHHHHHHHhhcCCCCCccccccccccccccCccccCCCChhHHHHhhccCCCCCC
Q 001263 542 RPLFRVTLDN--GEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPT 619 (1112)
Q Consensus 542 ~P~F~Vt~ed--~~~~~g~Sps~~W~~v~k~ik~~~~~~~d~~~~~~~~~~~~~sG~~~FGls~P~V~klIqsLp~a~~~ 619 (1112)
.|+|+|+++| +..+.|+||+.||.+|+++|++.++... .......+++|++||||++|.|+++||+||+|.+|
T Consensus 3 ~P~F~Vt~~d~p~~~~~g~s~~~~W~~i~~~v~~~r~~~~-----~~~~~~~~isG~~~FGls~p~V~~lie~Lp~a~~c 77 (86)
T PF05965_consen 3 GPLFEVTSEDDPGEVFEGSSPTEAWSEILERVNEARKQSG-----LLKLPPNSISGPEMFGLSNPAVQRLIESLPGADKC 77 (86)
T ss_dssp SEEEEEEETT-GGG-EEESSHHHHHHHHHHHHHHHHT------------TT----HHHHHSTTSHHHHHHHTTSTTGGG-
T ss_pred CCEEEEEECCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcc-----ccccCCCCCCHhHhcCCCCHHHHHHHHhCCCcchh
Confidence 4999999999 4468999999999999999988776652 11233457899999999999999999999999999
Q ss_pred Ccccccc
Q 001263 620 SKSSLCK 626 (1112)
Q Consensus 620 ~k~~~~k 626 (1112)
.+|.++.
T Consensus 78 ~~Y~f~~ 84 (86)
T PF05965_consen 78 SNYKFRY 84 (86)
T ss_dssp TT-----
T ss_pred hcCCccc
Confidence 9996553
No 33
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.36 E-value=3.8e-13 Score=123.61 Aligned_cols=80 Identities=30% Similarity=0.489 Sum_probs=66.7
Q ss_pred eEEEEcCC--CCcccCCCchhHHHHHHHHHHhhcCCCCCccccccccccccccCccccCCCChhHHHHhhccCCCCCCCc
Q 001263 544 LFRVTLDN--GEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSK 621 (1112)
Q Consensus 544 ~F~Vt~ed--~~~~~g~Sps~~W~~v~k~ik~~~~~~~d~~~~~~~~~~~~~sG~~~FGls~P~V~klIqsLp~a~~~~k 621 (1112)
+|+|+.++ +..|.|+||++||.+|+++|++.++.... .......++|++||||++|.|+++||+||++++|.+
T Consensus 1 lF~v~~~~~~~~~~~~~S~~~~W~~vl~~v~~~r~~~~~-----~~~~~~~isG~~mFGls~p~V~~lie~Lpga~~C~~ 75 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPEKCWEMVLERVQEARIVARL-----LQLLPEGVSGEDMFGLSSPAVVKLIEQLPGVHQCTN 75 (86)
T ss_pred CeEEEEecCCCCeEEeCCHHHHHHHHHHHHHHHHHHccc-----CCCCCCCCCcHHHhCCCcHHHHHHHHhCCCchhhhh
Confidence 59999888 45699999999999999999887766421 112234679999999999999999999999999999
Q ss_pred ccccccc
Q 001263 622 SSLCKLT 628 (1112)
Q Consensus 622 ~~~~k~~ 628 (1112)
|..+...
T Consensus 76 Y~~~~~~ 82 (86)
T smart00542 76 YWFRYHR 82 (86)
T ss_pred hhhccCC
Confidence 9988654
No 34
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.11 E-value=1.3e-10 Score=94.97 Aligned_cols=48 Identities=44% Similarity=0.665 Sum_probs=38.2
Q ss_pred ccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceE
Q 001263 241 FIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERI 290 (1112)
Q Consensus 241 ~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~ 290 (1112)
-+|.+|++|||++..||+|.|++||+.++.|+|.|+||++ |.|...+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 3899999999999999999999999999999999999998 44444443
No 35
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.01 E-value=2.7e-10 Score=90.69 Aligned_cols=41 Identities=27% Similarity=0.553 Sum_probs=37.7
Q ss_pred eeeCCCcccccceeecCCeEEEeeeccccCCCCcceeeEEE
Q 001263 493 IVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEV 533 (1112)
Q Consensus 493 Iv~d~~~fh~~~~IyP~Gy~s~R~~~S~~dp~~~~~Y~~eI 533 (1112)
++.++++||++++|||+||+++|.|+|+.||.++|.|+|.|
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i 42 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVI 42 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEE
Confidence 56788899999999999999999999999999999996555
No 36
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=98.96 E-value=1.4e-10 Score=88.45 Aligned_cols=36 Identities=44% Similarity=1.013 Sum_probs=21.9
Q ss_pred CCeeEEccCCCccccccccCCcCCCCCCceeccccc
Q 001263 662 NNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCR 697 (1112)
Q Consensus 662 ~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~ 697 (1112)
+|+||+|++|++.||+.|||+..++++..|+|++|+
T Consensus 1 ~n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CCceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 478999999999999999999998888789999995
No 37
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.81 E-value=1.3e-09 Score=129.38 Aligned_cols=127 Identities=30% Similarity=0.481 Sum_probs=107.6
Q ss_pred EecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcceecccccCCccccCCCCCCCCceEEEEEEC
Q 001263 963 FAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVN 1042 (1112)
Q Consensus 963 fA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~ 1042 (1112)
+|..+|.+| +|++|...+...+..+.-.. .....|+..+..+..||+...||++||+||||+|||....+.+.
T Consensus 319 ~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~-~~~~~~~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~ 391 (463)
T KOG1081|consen 319 TAKADIRKG------VGEVIDDKECKARLQRVKES-DLVDFYMVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVI 391 (463)
T ss_pred hhHHhhhcc------cCcccchhhheeehhhhhcc-chhhhhhhhhhcccccccccccchhhhhcccCCCceeechhhee
Confidence 888999998 89999888877776543222 22345655555555999999999999999999999999999999
Q ss_pred CeeEEEEEEccCCCCCCeEEEecCCCCCCCCeeeecCCCCCccccCCChHHHHH
Q 001263 1043 GDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQV 1096 (1112)
Q Consensus 1043 ~~~~i~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg~~~~~~~e~~~ 1096 (1112)
+..++.++|.+.|++|||||++|++........|.|++.+|.++++....+...
T Consensus 392 ~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~e~~~~~~~k~~~~~~~ 445 (463)
T KOG1081|consen 392 GDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGSENCTETKGKKKKKKKQ 445 (463)
T ss_pred cccccccccccccccchhhhheeeccccCCcceEeecccccccCCcccccchhh
Confidence 999999999999999999999999988888899999999999999988774444
No 38
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.72 E-value=1.1e-08 Score=112.64 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=84.7
Q ss_pred ccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecCcceecccccCCccccCCCCCCCCceE
Q 001263 957 IHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYS 1036 (1112)
Q Consensus 957 ~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~ 1036 (1112)
..|--|.+++.+.+|+-|--.+|-|+.-.+++++.... .+.+.|..... ..--.|...=+.|+||||.|.|||.+
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~----~g~nDFSvmyS-tRk~caqLwLGPaafINHDCrpnCkF 210 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLR----GGGNDFSVMYS-TRKRCAQLWLGPAAFINHDCRPNCKF 210 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHh----ccCCceeeeee-cccchhhheeccHHhhcCCCCCCcee
Confidence 45778999999999999999999998888887775321 12222221111 11122334456899999999999987
Q ss_pred EEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC-CCeeeec
Q 001263 1037 RVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID-EQLACYC 1078 (1112)
Q Consensus 1037 ~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~-~~~~C~C 1078 (1112)
. ..|..++.+-++|||++|||||.-|+..+.+ +...|.|
T Consensus 211 v---s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC 250 (453)
T KOG2589|consen 211 V---STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECEC 250 (453)
T ss_pred e---cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEE
Confidence 5 3466899999999999999999999887666 4667888
No 39
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.70 E-value=1.5e-05 Score=66.03 Aligned_cols=45 Identities=36% Similarity=0.842 Sum_probs=36.5
Q ss_pred ccccccCCcccCCCeeEEccCCCccccccccCCcCC----CCCCceeccccc
Q 001263 650 KCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEP----VNGVLWLCNLCR 697 (1112)
Q Consensus 650 ~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~----~~~~~W~C~~C~ 697 (1112)
+|.||+. ..+.+.+|+|+.|+..||..|+++... +.+ .|+|+.|.
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~-~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSG-DWYCPNCR 49 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSS-SBSSHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhccCCCC-cEECcCCc
Confidence 5889998 344578999999999999999997532 233 89999996
No 40
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=7.8e-05 Score=87.08 Aligned_cols=117 Identities=24% Similarity=0.343 Sum_probs=80.8
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCceee
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAH 727 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvH 727 (1112)
...|.||........|.+++|++|+.+.||.|--... +.-+.|.|..|..... .+.||++| .|.-+|
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~-~~~~~~~~~~c~~~~~---------~~~g~a~K---~g~~a~ 149 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRF-PSLDIGESTECVFPIF---------SQEGGALK---KGRLAR 149 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCccCc-CcCCcccccccccccc---------cccccccc---cccccc
Confidence 3689999988777778999999999999999986433 3344789998987544 36788888 555666
Q ss_pred eeccccccceEecCCCCCccccccccccccccCccceeecCc----CceeeecCCCCCCccccccchhhc
Q 001263 728 LACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVS----YGACIQCSNTTCRVAYHPLCARAA 793 (1112)
Q Consensus 728 v~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~----~Ga~iqC~~~~C~~~FH~~CA~~a 793 (1112)
|.+.+.. ..++.-...+..+.|++|... .-.+|||. +|.++||-.|-+-.
T Consensus 150 -------~~l~y~~-------~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~ 203 (464)
T KOG4323|consen 150 -------PSLPYPE-------ASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPL 203 (464)
T ss_pred -------ccccCcc-------cccccCccccccceeeeeecCCcCccceeeeec--ccccHHHHHhccCC
Confidence 2222211 112111122234569999851 23899999 99999999998653
No 42
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.42 E-value=0.00012 Score=85.54 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=83.3
Q ss_pred ccceEEEEEeccc--CeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeec----Ccceecccc-
Q 001263 946 FRKRLAFGKSGIH--GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRID----DERVIDATR- 1018 (1112)
Q Consensus 946 ~~~~l~v~~S~~~--G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~----~~~~IDa~~- 1018 (1112)
+...|.|..|.+. |+||++...|.+|+--+=|.|+++... . .......|++.+- .-.+||++.
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~----~------~~~~n~~y~W~I~~~d~~~~~iDg~d~ 95 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASI----D------SKSANNRYMWEIFSSDNGYEYIDGTDE 95 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccc----c------cccccCcceEEEEeCCCceEEeccCCh
Confidence 5778999998765 789999999999999999999982111 1 1112234555553 236899886
Q ss_pred -cCCccccCCCCCCC---CceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCC
Q 001263 1019 -AGSIAHLINHSCEP---NCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFS 1069 (1112)
Q Consensus 1019 -~Gn~aRfINHSC~P---Nc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~ 1069 (1112)
..|+.||+|=.++. |..+ +.....|.+.|+|+|.+||||.+.|+.++
T Consensus 96 ~~sNWmRYV~~Ar~~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 96 EHSNWMRYVNSARSEEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred hhcceeeeecccCChhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccch
Confidence 89999999988865 7554 23356799999999999999999997654
No 43
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=97.39 E-value=0.00085 Score=66.35 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=79.9
Q ss_pred CceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEEEecchhhhhhhhcccccCCCCCCCCchhHH
Q 001263 243 GLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMV 322 (1112)
Q Consensus 243 g~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~de~~ 322 (1112)
|++|=..|+.|.-||.|+|...- ..+.-.|.+++|+.+.+... ++-
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~~-----------~iI---------------------- 46 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPIS-----------DII---------------------- 46 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeChH-----------HeE----------------------
Confidence 78899999999999999999987 66777788877776665432 110
Q ss_pred hhhcccccCCCCCCCcEEEEecc--CcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccc
Q 001263 323 VLAASLDDCQELEPGDIIWAKLT--GHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLK 398 (1112)
Q Consensus 323 ~~a~~~~~~~~f~~GdlVWaK~~--GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~ 398 (1112)
.+ +......+++||-|+|+.. ++.|=||+|..-.+.. ...+..|.|.||.. ..++++...+.....
T Consensus 47 ~~--~~~~~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~-------~~~~~~~~V~f~ng-~~~~vp~~~~~~I~~ 114 (124)
T PF15057_consen 47 AL--SDAMRHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERR-------ASEDKEYTVRFYNG-KTAKVPRGEVIWISP 114 (124)
T ss_pred Ec--cCcccCcCCCCCEEEEecCcCCCEEeCEEEEECcccc-------ccCCceEEEEEECC-CCCccchhhEEECCH
Confidence 01 1112456899999999965 7778899998632211 34557799999965 477788777776655
No 44
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.20 E-value=0.00015 Score=77.73 Aligned_cols=49 Identities=35% Similarity=0.868 Sum_probs=40.7
Q ss_pred CcCccccccCCcccCCCeeEEccCCCccccccccCC--cCCCCCCceecccccC
Q 001263 647 DLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGE--LEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 647 ~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~--~~~~~~~~W~C~~C~~ 698 (1112)
+--.|+||+..+ ++++||+||.|..++|++|+.. ..+|+| .|-|..|..
T Consensus 280 eck~csicgtse--nddqllfcddcdrgyhmyclsppm~eppeg-swsc~KOG~ 330 (336)
T KOG1244|consen 280 ECKYCSICGTSE--NDDQLLFCDDCDRGYHMYCLSPPMVEPPEG-SWSCHLCLE 330 (336)
T ss_pred ecceeccccCcC--CCceeEeecccCCceeeEecCCCcCCCCCC-chhHHHHHH
Confidence 445899998755 4578999999999999999984 466777 999999964
No 45
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.12 E-value=0.00072 Score=57.14 Aligned_cols=44 Identities=30% Similarity=0.567 Sum_probs=39.9
Q ss_pred ccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccC-CCccccccc
Q 001263 241 FIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVD-GDEEDLILS 286 (1112)
Q Consensus 241 ~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 286 (1112)
-+|..|.+.| .|+.||.|+|+++++. +...|.|.| |..|++.+.
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 3899999999 9999999999999988 889999999 999988753
No 46
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.09 E-value=0.00029 Score=82.45 Aligned_cols=54 Identities=35% Similarity=0.661 Sum_probs=42.4
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCcCC-----CCCCceecccccCCCC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEP-----VNGVLWLCNLCRPGAP 701 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~-----~~~~~W~C~~C~~~~~ 701 (1112)
+..|+||..+.....|.||+|++|+..||+.|.-.... .....|+|..|..+..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 45799999888777889999999999999999863211 1123799999997643
No 47
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.88 E-value=0.00041 Score=74.83 Aligned_cols=48 Identities=29% Similarity=0.657 Sum_probs=41.4
Q ss_pred CcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecc-ccc
Q 001263 647 DLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCN-LCR 697 (1112)
Q Consensus 647 ~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~-~C~ 697 (1112)
+-..|.||+....+ +++++||.|+.++|..|.|+...|.| .|+|+ .|.
T Consensus 313 ~C~lC~IC~~P~~E--~E~~FCD~CDRG~HT~CVGL~~lP~G-~WICD~~C~ 361 (381)
T KOG1512|consen 313 SCELCRICLGPVIE--SEHLFCDVCDRGPHTLCVGLQDLPRG-EWICDMRCR 361 (381)
T ss_pred ccHhhhccCCcccc--hheeccccccCCCCccccccccccCc-cchhhhHHH
Confidence 45689999987654 57999999999999999999999988 99999 343
No 48
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.83 E-value=0.0018 Score=52.63 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=38.6
Q ss_pred CceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccC-CCccccccc
Q 001263 243 GLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVD-GDEEDLILS 286 (1112)
Q Consensus 243 g~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 286 (1112)
|..|.+.|++|..||.|+|++.++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678899999999999999999998 7788999999 999987754
No 49
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.80 E-value=0.0018 Score=55.68 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=33.7
Q ss_pred ccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccC
Q 001263 241 FIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVD 277 (1112)
Q Consensus 241 ~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 277 (1112)
-+|..|.|+|+.|..||.|+|+.++. .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 38999999999999999999999998 6789999998
No 50
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.60 E-value=0.0014 Score=66.35 Aligned_cols=69 Identities=20% Similarity=0.475 Sum_probs=47.5
Q ss_pred ccccccC-CcccCCCeeEEccCCCccccccccCCc--------CCCCC-CceecccccCCCC--C----CCCCcccCCCC
Q 001263 650 KCSVCHM-DEEYQNNLFLQCDKCRMMVHARCYGEL--------EPVNG-VLWLCNLCRPGAP--E----PPPPCCLCPVV 713 (1112)
Q Consensus 650 ~C~VC~~-~~~~~~n~ll~Cd~C~~~VH~~CYG~~--------~~~~~-~~W~C~~C~~~~~--~----~~~~C~LC~~~ 713 (1112)
+|.+|.. +++.+..+||+|.||..++|+.|+|.. .+-++ ----|.+|..... + ..-.|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 5999976 455667799999999999999999942 22222 1245999975321 1 23479999877
Q ss_pred CCCce
Q 001263 714 GGAMK 718 (1112)
Q Consensus 714 gGalK 718 (1112)
|-+-+
T Consensus 81 G~~c~ 85 (175)
T PF15446_consen 81 GPSCK 85 (175)
T ss_pred CCCCc
Confidence 75543
No 51
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=96.40 E-value=0.0016 Score=78.14 Aligned_cols=54 Identities=30% Similarity=0.650 Sum_probs=45.4
Q ss_pred CCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccc
Q 001263 333 ELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISF 396 (1112)
Q Consensus 333 ~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f 396 (1112)
.+..||+||-++..|+|||++|+.+..++ +.. .. .+|+|||. ++|+....+.+|
T Consensus 135 ~~~~~~~vw~~vg~~~~~~c~vc~~~~~~----~~~---~~-~~~~f~~~--~~~~~~~~~~~~ 188 (463)
T KOG1081|consen 135 KREVGDLVWSKVGEYPWWPCMVCHDPLLP----KGM---KH-DHVNFFGC--YAWTHEKRVFPY 188 (463)
T ss_pred cccceeEEeEEcCcccccccceecCcccc----hhh---cc-ccceeccc--hhhHHHhhhhhc
Confidence 57899999999999999999999876655 111 11 18999999 999999999999
No 52
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=96.11 E-value=0.0022 Score=74.93 Aligned_cols=86 Identities=26% Similarity=0.430 Sum_probs=64.6
Q ss_pred CCCcccCCCCCCCceec-CCCceeeeeccccccceEecCCCCCccccccccccccccCccceeecCcCceeeecCCCCCC
Q 001263 704 PPPCCLCPVVGGAMKPT-TDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCR 782 (1112)
Q Consensus 704 ~~~C~LC~~~gGalK~t-~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~~Ga~iqC~~~~C~ 782 (1112)
...|++|+... .+. ....|+|+.|++|.|.+.+.....+..+. ........+.|..|.+ .|+.+.|....|.
T Consensus 221 e~~~~l~~~~~---~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~---~~v~r~~~~~c~~c~k-~ga~~~c~~~~~~ 293 (375)
T KOG1084|consen 221 EFFCALSPKAT---IPDIGFELWYHRYCALWAPNVHESQGGQLTNVD---NAVIRFPSLQCILCQK-PGATLKCVQASLL 293 (375)
T ss_pred hhhhhhcCCCc---CCccchhHHHHHHHHhcCCcceeccCccccCch---hhhhcccchhcccccC-CCCchhhhhhhhh
Confidence 34788887544 333 45689999999999999998876665444 2222222379999998 7899999999999
Q ss_pred ccccccchhhcCce
Q 001263 783 VAYHPLCARAAGLC 796 (1112)
Q Consensus 783 ~~FH~~CA~~aG~~ 796 (1112)
..+|.+|+..+-..
T Consensus 294 ~~~h~~c~~~~~~~ 307 (375)
T KOG1084|consen 294 SNAHFPCARAKNGI 307 (375)
T ss_pred cccCcccccCcccc
Confidence 99999999877653
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.05 E-value=0.0027 Score=76.75 Aligned_cols=49 Identities=27% Similarity=0.713 Sum_probs=40.3
Q ss_pred CcCccccccCCcccCCCeeEEccCCCcc-ccccccCCc--CCCCCCceecccccC
Q 001263 647 DLDKCSVCHMDEEYQNNLFLQCDKCRMM-VHARCYGEL--EPVNGVLWLCNLCRP 698 (1112)
Q Consensus 647 ~~~~C~VC~~~~~~~~n~ll~Cd~C~~~-VH~~CYG~~--~~~~~~~W~C~~C~~ 698 (1112)
+...|.||...+.+ +.||.||.|+.+ +|.+|+... .+|.+ .|+|+-|..
T Consensus 214 E~~~C~IC~~~DpE--dVLLLCDsCN~~~YH~YCLDPdl~eiP~~-eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE--DVLLLCDSCNKVYYHVYCLDPDLSESPVN-EWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChH--HhheeecccccceeeccccCccccccccc-ceecCcchh
Confidence 34589999987654 579999999999 999999853 35666 899999975
No 54
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=95.78 E-value=0.014 Score=56.37 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=35.9
Q ss_pred CCCccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccc
Q 001263 238 PKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLI 284 (1112)
Q Consensus 238 ~~~~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 284 (1112)
+.++||.||---|-+++-||.|+|+. +....+.+|.+|||.+-.|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 35799999999999777779999999 57888999999999875443
No 55
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.65 E-value=0.0031 Score=68.84 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=52.4
Q ss_pred ccCCCCCCCccCceeEEEccCCCCeeeEEEEEee-CCCCeEEEEccCC----Ccccccc---ccceEEEEe
Q 001263 232 CCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYD-SESNRHHVKYVDG----DEEDLIL---SNERIKFYI 294 (1112)
Q Consensus 232 ~~~~~~~~~~vg~~~~v~wp~d~~~y~g~v~~~~-~~~~~h~v~Yddg----~~e~l~l---~~e~~~~~~ 294 (1112)
+++...|+.+||++|..-||+++.||++.|+.|+ ....+|.+.||.- -++|++| .+|+|+|..
T Consensus 151 ~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 151 SWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 4577888999999999999999999999999955 5666888888843 5778886 688899844
No 56
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=95.59 E-value=0.0064 Score=42.89 Aligned_cols=19 Identities=37% Similarity=1.015 Sum_probs=16.4
Q ss_pred CeeeecCCCCCccccCCCh
Q 001263 1073 QLACYCGFPRCRGVVNDTE 1091 (1112)
Q Consensus 1073 ~~~C~Cgs~~Crg~~~~~~ 1091 (1112)
.++|+||+++|||+|+...
T Consensus 2 ~~~C~CGs~~CRG~l~~~~ 20 (26)
T smart00508 2 KQPCLCGAPNCRGFLGXXX 20 (26)
T ss_pred CeeeeCCCccccceecccc
Confidence 5799999999999997643
No 57
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.51 E-value=0.005 Score=73.86 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=40.8
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCCc----CCCCCCceecccccCC
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL----EPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~----~~~~~~~W~C~~C~~~ 699 (1112)
++|.-|...+.. |.||.||+|...|||.|+-.+ ..|.| .|+|..|...
T Consensus 254 ~fCsaCn~~~~F--~~~i~CD~Cp~sFH~~CLePPl~~eniP~g-~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLF--NDIICCDGCPRSFHQTCLEPPLEPENIPPG-SWFCPECKIK 305 (613)
T ss_pred HHHHHhCCcccc--ccceeecCCchHHHHhhcCCCCCcccCCCC-ccccCCCeee
Confidence 599999998766 788999999999999999754 34666 8999999864
No 58
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=94.80 E-value=0.012 Score=66.26 Aligned_cols=37 Identities=27% Similarity=0.728 Sum_probs=33.2
Q ss_pred CeeEEccC--CC-ccccccccCCcCCCCCCceecccccCCC
Q 001263 663 NLFLQCDK--CR-MMVHARCYGELEPVNGVLWLCNLCRPGA 700 (1112)
Q Consensus 663 n~ll~Cd~--C~-~~VH~~CYG~~~~~~~~~W~C~~C~~~~ 700 (1112)
..||-||+ |. -.||..|-|+...|.| .|||+.|....
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~~~Pkg-kWyC~~C~~~~ 269 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLKTKPKG-KWYCPRCKAEN 269 (274)
T ss_pred ccccccCCCCCCcceEEEeccccccCCCC-cccchhhhhhh
Confidence 47999998 99 9999999999999988 69999998643
No 59
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=94.77 E-value=0.018 Score=62.11 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=39.0
Q ss_pred cccCcCccccccCCcccCCCeeEEccC--CCc-cccccccCCcCCCCCCceecccccC
Q 001263 644 DWKDLDKCSVCHMDEEYQNNLFLQCDK--CRM-MVHARCYGELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 644 ~~~~~~~C~VC~~~~~~~~n~ll~Cd~--C~~-~VH~~CYG~~~~~~~~~W~C~~C~~ 698 (1112)
..++..+|= |...-. .+||-||+ |.. .||..|.|+..+|.| .|+|+.|+.
T Consensus 217 se~e~lYCf-CqqvSy---GqMVaCDn~nCkrEWFH~~CVGLk~pPKG-~WYC~eCk~ 269 (271)
T COG5034 217 SEGEELYCF-CQQVSY---GQMVACDNANCKREWFHLECVGLKEPPKG-KWYCPECKK 269 (271)
T ss_pred ccCceeEEE-eccccc---ccceecCCCCCchhheeccccccCCCCCC-cEeCHHhHh
Confidence 334445554 776543 47999997 765 799999999999998 999999974
No 60
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=93.88 E-value=0.096 Score=58.65 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=39.2
Q ss_pred cCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEcc-CCCccccccc
Q 001263 242 IGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYV-DGDEEDLILS 286 (1112)
Q Consensus 242 vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~l~l~ 286 (1112)
||-+|...|-.|..||.|+|++.+...+.-.|+|+ -|..|.+.|.
T Consensus 71 vGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 71 VGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 99999999999999999999999999999999998 4777777774
No 61
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.13 E-value=0.061 Score=66.90 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=40.5
Q ss_pred ccccCcCccccccCCcccCCCeeEEccCCCccccccccCCc--CCCCCCceecccccC
Q 001263 643 VDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL--EPVNGVLWLCNLCRP 698 (1112)
Q Consensus 643 ~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~--~~~~~~~W~C~~C~~ 698 (1112)
..|.+...|.||...+ .+|.|+.|...||..|.+.. ..+.++ |+|.+|..
T Consensus 42 ~~~~~~e~c~ic~~~g-----~~l~c~tC~~s~h~~cl~~pl~~~p~~~-~~c~Rc~~ 93 (696)
T KOG0383|consen 42 WDDAEQEACRICADGG-----ELLWCDTCPASFHASCLGPPLTPQPNGE-FICPRCFC 93 (696)
T ss_pred cchhhhhhhhhhcCCC-----cEEEeccccHHHHHHccCCCCCcCCccc-eeeeeecc
Confidence 3456678999998875 47889999999999999854 456676 99999954
No 62
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=88.94 E-value=0.35 Score=59.59 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=51.5
Q ss_pred hhhhhHHhhhcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhh
Q 001263 935 MADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRRE 991 (1112)
Q Consensus 935 ~~~~~~~l~~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~ 991 (1112)
.-|.|++.+-+.+.+|.+.++-.+|||+....+|.+|.||+-|.|.++....++.-+
T Consensus 786 ~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks~ 842 (1262)
T KOG1141|consen 786 PDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKSE 842 (1262)
T ss_pred HHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhhh
Confidence 357889999999999999999999999999999999999999999999887776654
No 63
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=88.52 E-value=0.73 Score=43.28 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCcEEEEecc--CcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccccccccccccCChHHH
Q 001263 336 PGDIIWAKLT--GHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRF 413 (1112)
Q Consensus 336 ~GdlVWaK~~--GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~~~~~~~~~k~k~~~f 413 (1112)
+|-+|-.... --.|.||.|+.++-... + .-++.+++|+=|-|..|.-|+.+++..|..+ ..+......
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc~dd---v--~VkKD~~lVRSFkD~KfysV~rkd~~e~~~~-----~~~k~e~s~ 77 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSCNDD---V--TVKKDQCLVRSFKDGKFYSVARKDVREFDID-----SLPKSESSL 77 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS-SS---------TT-EEEEESSS--EEEE-TTTEE---ST-----TS-HHHHHH
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCccce---e--eeccceEEEEEeccCceEEEEhhhhhhcccc-----cCCcccchh
Confidence 6777776543 34699999999754333 1 2346789999999999999999999999864 111122468
Q ss_pred HHHHHHHHHHHHhCCCh
Q 001263 414 TQSLEEAKVYLSEQKLP 430 (1112)
Q Consensus 414 ~~Al~Ea~~~~~~~~~~ 430 (1112)
+.||+.|..+++....|
T Consensus 78 k~al~~A~~Fl~~~~vP 94 (96)
T PF08169_consen 78 KPALDKASTFLKTGVVP 94 (96)
T ss_dssp -HHHHHHHHHHHS----
T ss_pred hHHHHHHHHHHhcCCCC
Confidence 89999999999987766
No 64
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=88.46 E-value=0.18 Score=61.12 Aligned_cols=48 Identities=27% Similarity=0.696 Sum_probs=36.7
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCC--cCCCCCCceecccccC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGE--LEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~--~~~~~~~~W~C~~C~~ 698 (1112)
-.+|..|+..++. ..+++|++|.+.+|-+|.-. ..++.| +|+|..|..
T Consensus 68 crvCe~c~~~gD~--~kf~~Ck~cDvsyh~yc~~P~~~~v~sg-~~~ckk~~~ 117 (694)
T KOG4443|consen 68 CRVCEACGTTGDP--KKFLLCKRCDVSYHCYCQKPPNDKVPSG-PWLCKKCTR 117 (694)
T ss_pred ceeeeeccccCCc--ccccccccccccccccccCCccccccCc-ccccHHHHh
Confidence 3578888755443 57899999999999999763 345666 999999973
No 65
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=88.42 E-value=0.49 Score=39.98 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=40.6
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCE--EEeeCCCcc
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDF--ARINVKQVI 394 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~--awv~~~~l~ 394 (1112)
|++|+.|+++.+.--|-+|.|.+... ..+...|.|.|.|-+.+ .||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~---------~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIRE---------KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEE---------CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEe---------cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 67999999999777788999987432 23446799999999885 999998874
No 66
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=88.27 E-value=0.12 Score=69.44 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=40.8
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCC--cCCCCCCceecccccCCC
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGE--LEPVNGVLWLCNLCRPGA 700 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~--~~~~~~~~W~C~~C~~~~ 700 (1112)
..|.||...... +.|+.|+.|..+||..|... ..++.+ +|+|+.|....
T Consensus 1109 ~~c~~cr~k~~~--~~m~lc~~c~~~~h~~C~rp~~~~~~~~-dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQD--EKMLLCDECLSGFHLFCLRPALSSVPPG-DWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhcccc--hhhhhhHhhhhhHHHHhhhhhhccCCcC-CccCCccchhh
Confidence 489999986643 57999999999999999984 467777 89999998643
No 67
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.18 E-value=0.32 Score=40.75 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=27.0
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYG 681 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG 681 (1112)
...|.+|+..-.. .+.+|+|..|+..+|..||-
T Consensus 5 ~~~C~~Cg~~~~~-~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-GDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccC-CCCEEECCCCCCcccHHHHh
Confidence 4689999986532 34689999999999999993
No 68
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=84.72 E-value=1.2 Score=38.24 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCCCCcEEEEec-cCcCCCCceeecCccccCccccccCCCCCcEEEEEeC--CCCEEEeeCCCcccc
Q 001263 333 ELEPGDIIWAKL-TGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFG--THDFARINVKQVISF 396 (1112)
Q Consensus 333 ~f~~GdlVWaK~-~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG--~~~~awv~~~~l~~f 396 (1112)
.|.+||+|-|+. ..-.||+|+|.... +.+.|.|+|.+ ....-=++..+|.|-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~------------~~~~~~V~~~~~~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL------------GDGKYLVRYLTESEPLKETVDWSDLRPH 56 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC------------CCCEEEEEECCCCcccEEEEeHHHcccC
Confidence 589999999998 35679999997521 13459999998 555555555666554
No 70
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=81.94 E-value=1.1 Score=52.60 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=37.2
Q ss_pred cCcCccccccCCcccCCCeeEEccCCCccccccccCCc--CCCC---CCceecccc
Q 001263 646 KDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL--EPVN---GVLWLCNLC 696 (1112)
Q Consensus 646 ~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~--~~~~---~~~W~C~~C 696 (1112)
.-...|.||....+ .-.+++||-|.+.+|..|+..+ ..|. ...|.|..|
T Consensus 542 a~~ysCgiCkks~d--QHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 542 AMNYSCGICKKSTD--QHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ccceeeeeeccchh--hHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 33468999988653 3579999999999999999843 3333 236999999
No 71
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.05 E-value=0.59 Score=51.26 Aligned_cols=50 Identities=16% Similarity=0.431 Sum_probs=36.8
Q ss_pred cCccccccCCccc----CCCeeEEccCCCccccccccCCcCC----CCCCceeccccc
Q 001263 648 LDKCSVCHMDEEY----QNNLFLQCDKCRMMVHARCYGELEP----VNGVLWLCNLCR 697 (1112)
Q Consensus 648 ~~~C~VC~~~~~~----~~n~ll~Cd~C~~~VH~~CYG~~~~----~~~~~W~C~~C~ 697 (1112)
...|.+|...... ..|.+|.|..|..+.|..|..+... .....|-|-.|+
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3589999876532 3456999999999999999975422 223479998886
No 72
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=80.54 E-value=0.83 Score=37.58 Aligned_cols=30 Identities=37% Similarity=0.914 Sum_probs=24.9
Q ss_pred ceeecC--cCceeeecCCCCCCccccccchhhcC
Q 001263 763 CSICGV--SYGACIQCSNTTCRVAYHPLCARAAG 794 (1112)
Q Consensus 763 C~iC~~--~~Ga~iqC~~~~C~~~FH~~CA~~aG 794 (1112)
|.+|++ ..+.+|+|. .|..+||..|.....
T Consensus 2 C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCD--SCNRWYHQECVGPPE 33 (51)
T ss_dssp BTTTTSSCTTSSEEEBS--TTSCEEETTTSTSSH
T ss_pred CcCCCCcCCCCCeEEcC--CCChhhCcccCCCCh
Confidence 677876 468999999 899999999986643
No 73
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=80.35 E-value=2 Score=35.95 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=44.2
Q ss_pred CCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCcccccc
Q 001263 333 ELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLK 398 (1112)
Q Consensus 333 ~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~f~~ 398 (1112)
.|++|++|-|+...=-|.+|+|..... .+.+.|+|.+.....||+..+|.+...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~------------~~~~~V~f~D~G~~~~v~~~~l~~l~~ 55 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDG------------EQLYEVFFIDYGNEEVVPPSDLRPLPE 55 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECC------------CCEEEEEEECCCccEEEeHHHeecCCC
Confidence 478999999999666799999977421 156899999989999999999987754
No 74
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=79.62 E-value=0.74 Score=56.10 Aligned_cols=60 Identities=27% Similarity=0.629 Sum_probs=45.6
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCCc---CCCCCCceecccccCCCCCCCCCcccCCCCCCCce
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL---EPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMK 718 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~---~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK 718 (1112)
..|-+|...+....+.|+.|..|+..+|..|.... .+..+ .|-|..|. .|.-|. ++|..+
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~-gWrC~~cr--------vCe~c~-~~gD~~ 81 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSG-GWRCPSCR--------VCEACG-TTGDPK 81 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcC-CcccCCce--------eeeecc-ccCCcc
Confidence 46788887777777789999999999999998732 22333 59999997 588898 444443
No 75
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=78.98 E-value=1.9 Score=55.35 Aligned_cols=110 Identities=25% Similarity=0.469 Sum_probs=72.5
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCc--CCCCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCce
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL--EPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRW 725 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~--~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~W 725 (1112)
++.|-+|...+ .++.|..|...||..|.--+ .++.. .|-|..|...+-+..+.|+|=+.+.+...+.+.
T Consensus 344 ddhcrf~~d~~-----~~lc~Et~prvvhlEcv~hP~~~~~s~-~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~--- 414 (1414)
T KOG1473|consen 344 DDHCRFCHDLG-----DLLCCETCPRVVHLECVFHPRFAVPSA-FWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTP--- 414 (1414)
T ss_pred cccccccCccc-----ceeecccCCceEEeeecCCccccCCCc-cchhhhhhhhccCcccccccChhhcccceeccC---
Confidence 46999998765 47899999999999997633 34444 899999987665555567777766666533321
Q ss_pred eeeeccccccceEecCCCCCcccccccccccccc--CccceeecCcCceeeecCCCCCCccccc-cchh
Q 001263 726 AHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRW--KLLCSICGVSYGACIQCSNTTCRVAYHP-LCAR 791 (1112)
Q Consensus 726 vHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~--~~~C~iC~~~~Ga~iqC~~~~C~~~FH~-~CA~ 791 (1112)
+ |.+......| ...|.||+. .+..+ |+++.|.+.||. .|--
T Consensus 415 ----------------------i-G~dr~gr~ywfi~rrl~Ie~~-det~l-~yysT~pqly~ll~cLd 458 (1414)
T KOG1473|consen 415 ----------------------I-GRDRYGRKYWFISRRLRIEGM-DETLL-WYYSTCPQLYHLLRCLD 458 (1414)
T ss_pred ----------------------C-CcCccccchhceeeeeEEecC-CCcEE-EEecCcHHHHHHHHHhc
Confidence 1 1111111111 236999997 45444 445679999999 7754
No 76
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=78.70 E-value=2.7 Score=50.71 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=29.6
Q ss_pred cCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCC-eEEEecCCCC
Q 001263 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWE-ELTYDYRFFS 1069 (1112)
Q Consensus 1025 fINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GE-ELT~dY~~~~ 1069 (1112)
++||||.||+. +..+ .....+++...+.+++ ||++.|-...
T Consensus 208 ~~~hsC~pn~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~y~~~~ 249 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFD-GRGLALLVPAGIDAGEEELTISYTDPL 249 (482)
T ss_pred hcccCCCCCeE---EEEC-CceeEEEeecccCCCCCEEEEeecccc
Confidence 67999999987 2233 3455567777777776 9999996543
No 77
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=77.97 E-value=1.1 Score=50.60 Aligned_cols=29 Identities=38% Similarity=0.787 Sum_probs=24.2
Q ss_pred cceeecC-cCceeeecCCCCCC-ccccccch
Q 001263 762 LCSICGV-SYGACIQCSNTTCR-VAYHPLCA 790 (1112)
Q Consensus 762 ~C~iC~~-~~Ga~iqC~~~~C~-~~FH~~CA 790 (1112)
.-++|.+ ++|.||.|...+|. .|||..|.
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV 250 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCV 250 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEecc
Confidence 3445554 79999999999999 99999996
No 78
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=77.89 E-value=0.87 Score=49.77 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=53.5
Q ss_pred CccccccCCccc-----CCCeeEEccCCCccccccccCCcC----CCCCCceecccccCCCCCCCCCcccCCCCCC---C
Q 001263 649 DKCSVCHMDEEY-----QNNLFLQCDKCRMMVHARCYGELE----PVNGVLWLCNLCRPGAPEPPPPCCLCPVVGG---A 716 (1112)
Q Consensus 649 ~~C~VC~~~~~~-----~~n~ll~Cd~C~~~VH~~CYG~~~----~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gG---a 716 (1112)
.+|+-|..+... -..+||.|..|+..-|.+|+-... ......|-|..|++ |.+|+.... .
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~--------csicgtsenddql 296 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY--------CSICGTSENDDQL 296 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce--------eccccCcCCCcee
Confidence 489999875422 123599999999999999997421 12234799999984 888886543 3
Q ss_pred ceecCCCceeeeeccc
Q 001263 717 MKPTTDGRWAHLACAI 732 (1112)
Q Consensus 717 lK~t~~g~WvHv~Cal 732 (1112)
|-.-++.+=+|+-|.-
T Consensus 297 lfcddcdrgyhmycls 312 (336)
T KOG1244|consen 297 LFCDDCDRGYHMYCLS 312 (336)
T ss_pred EeecccCCceeeEecC
Confidence 3444566778988864
No 79
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=76.71 E-value=1.7 Score=44.12 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=21.2
Q ss_pred cccccccCC--cCCCCCCceecccccCCC
Q 001263 674 MVHARCYGE--LEPVNGVLWLCNLCRPGA 700 (1112)
Q Consensus 674 ~VH~~CYG~--~~~~~~~~W~C~~C~~~~ 700 (1112)
++|..|+.. ..+|+| +|+|+.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g-~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEG-DWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCC-CcCCCCCcCCC
Confidence 589999984 467887 89999998754
No 80
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=75.87 E-value=1.2 Score=32.62 Aligned_cols=28 Identities=25% Similarity=0.829 Sum_probs=12.4
Q ss_pred ccccccCCcccCCCeeEEccCCCccccccc
Q 001263 650 KCSVCHMDEEYQNNLFLQCDKCRMMVHARC 679 (1112)
Q Consensus 650 ~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~C 679 (1112)
.|.+|+..... +....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhc
Confidence 59999886543 46899999999999988
No 81
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.34 E-value=2.4 Score=37.67 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=18.7
Q ss_pred CccccccCCcc-cCCCeeEEcc--CCCccccccccCC-----cC---CCCCCceecccccC
Q 001263 649 DKCSVCHMDEE-YQNNLFLQCD--KCRMMVHARCYGE-----LE---PVNGVLWLCNLCRP 698 (1112)
Q Consensus 649 ~~C~VC~~~~~-~~~n~ll~Cd--~C~~~VH~~CYG~-----~~---~~~~~~W~C~~C~~ 698 (1112)
..|.||..... .+.-+.+.|+ .|+..+|..|+-. .. ...-..+-|+.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 57999998654 3333578998 7999999999841 11 11112467888874
No 82
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=71.62 E-value=4.2 Score=33.67 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=25.9
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCc
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL 683 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~ 683 (1112)
...|++|...--.....-+.|..|++.+|..|....
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 368999987542233567899999999999998743
No 83
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=68.86 E-value=5.5 Score=32.08 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=37.2
Q ss_pred CcEEEEeccC-cCCCCceeecCccccCccccccCCCCCcEEEEEeCCCCEEEeeCCCccc
Q 001263 337 GDIIWAKLTG-HAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVIS 395 (1112)
Q Consensus 337 GdlVWaK~~G-yPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~l~~ 395 (1112)
|+++.|+... --|.+|+|.... ..+.+.|+|..-.....|+.++|.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~------------~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL------------SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC------------CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 7899999987 789999997632 1455899999888888888777653
No 84
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=67.77 E-value=35 Score=34.20 Aligned_cols=110 Identities=22% Similarity=0.355 Sum_probs=60.9
Q ss_pred CCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEEEecchhhhhhhhcccccCCCCCCCCchhHHhhhcccccC
Q 001263 252 LDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDC 331 (1112)
Q Consensus 252 ~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~de~~~~a~~~~~~ 331 (1112)
.+..|--+.|++|+..+++..|.=.|.+. .+. .+.++..++--|-... .......
T Consensus 15 ~~~~WIla~Vv~~~~~~~rYeV~D~d~~~-----~~~--~~~~~~~~iIPLP~~~------------------~~~~~~~ 69 (130)
T PF07039_consen 15 EEEEWILAEVVKYNSDGNRYEVEDPDPEE-----EKK--RYKLSRKQIIPLPKKA------------------PPDTDPL 69 (130)
T ss_dssp TTCEEEEEEEEEEETTTTEEEEEETTTCT-----TTE--EEEEEGGGEEEE-SB--------------------TTT-GG
T ss_pred CCCCEEEEEEEEEeCCCCEEEEecCCCCC-----CCc--eEEeCHHHEEECCCcc------------------CCCCCch
Confidence 46899999999999999777776444443 212 3434444333332100 0111223
Q ss_pred CCCCCCcEEEEeccCc-CCCCceeecCccccCccccccCCCCCcEEEEEeCCCCE---EEeeCCCcccc
Q 001263 332 QELEPGDIIWAKLTGH-AMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDF---ARINVKQVISF 396 (1112)
Q Consensus 332 ~~f~~GdlVWaK~~Gy-PwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~---awv~~~~l~~f 396 (1112)
..|..|..|+|-...= -.-||.|+..+ ....+.|.|.|=|+.+- --|+..-+++|
T Consensus 70 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p----------~~~~~~y~l~Fedd~~~~~~~~V~~r~Vv~~ 128 (130)
T PF07039_consen 70 AEFPKGTKVLALYPDTTCFYPATVVSPP----------KKKSGEYKLKFEDDEDADGYREVPQRYVVAF 128 (130)
T ss_dssp GS--TT-EEEEE-TTSSEEEEEEEEEE-----------SSTTS-EEEEECTTTSTTSBEEE-GGGEEE-
T ss_pred hhCCCCCEEEEECCCCceEEEEEEEeCC----------CCCCCcEEEEEeCCCCcCCcEEEccceEEcc
Confidence 4699999999986552 35679997641 13456799999998763 35555544443
No 85
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=66.99 E-value=4.3 Score=29.89 Aligned_cols=28 Identities=32% Similarity=0.840 Sum_probs=22.1
Q ss_pred ccccccCCcccCCCeeEEccCCCccccccc
Q 001263 650 KCSVCHMDEEYQNNLFLQCDKCRMMVHARC 679 (1112)
Q Consensus 650 ~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~C 679 (1112)
.|+||+..-... . +..|+.|+..+|..|
T Consensus 2 ~C~~C~~~~~~~-~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGF-Y-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCC-E-eEEeCCCCCeEcCcc
Confidence 599997754331 1 899999999999988
No 86
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=66.70 E-value=10 Score=33.37 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=26.4
Q ss_pred cCceeEEEccC---CCCeeeEEEEEeeCCCCeEEEEccCC
Q 001263 242 IGLQCKVYWPL---DADWYSGFVVGYDSESNRHHVKYVDG 278 (1112)
Q Consensus 242 vg~~~~v~wp~---d~~~y~g~v~~~~~~~~~h~v~Yddg 278 (1112)
.|.+|.|.--. ..+||.|+|+..+... +..|.|+|=
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~~ 41 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDDL 41 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT-
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECCc
Confidence 58888888765 3599999999999777 999999743
No 87
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=64.71 E-value=3.3 Score=33.57 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=26.0
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGE 682 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~ 682 (1112)
...|.+|...-......-+.|+.|++.||..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 35899997743221235678999999999999863
No 88
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=64.52 E-value=4.5 Score=49.37 Aligned_cols=40 Identities=33% Similarity=0.327 Sum_probs=30.2
Q ss_pred cCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCC
Q 001263 1025 LINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRF 1067 (1112)
Q Consensus 1025 fINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~ 1067 (1112)
+.||+|.+. .. .+......+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~-~~--~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI-KA--GYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc-cc--cccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 469999992 11 22222348899999999999999999975
No 89
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=60.85 E-value=4.2 Score=49.15 Aligned_cols=102 Identities=23% Similarity=0.472 Sum_probs=49.6
Q ss_pred CceecccccCCCCC------CCCCcccCC---CCCCCceecCCCceeeeeccccccceEecCCCCCc--ccccccccccc
Q 001263 689 VLWLCNLCRPGAPE------PPPPCCLCP---VVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRME--PIDGLNRVSKD 757 (1112)
Q Consensus 689 ~~W~C~~C~~~~~~------~~~~C~LC~---~~gGalK~t~~g~WvHv~Cal~~pe~~f~~~~~~~--pi~~i~~i~~~ 757 (1112)
..-+|..|....+. ....|+-|. ..|++|.-. +.+| |+.|..--....+.+.+.|. -+.-...-...
T Consensus 112 k~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llal-d~qw-hv~cfkc~~c~~vL~gey~skdg~pyce~dy~~ 189 (670)
T KOG1044|consen 112 KECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLAL-DKQW-HVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQA 189 (670)
T ss_pred hhhhhhhhcCcccCCcccccCCccccchhhhhhccceeeee-ccce-eeeeeehhhhcccccceeeccCCCcchhhhhhh
Confidence 34677777654331 123677776 345555433 3345 44554321111111111111 01111122233
Q ss_pred ccCccceeecC-cCceeeecCCCCCCccccccchhhcCce
Q 001263 758 RWKLLCSICGV-SYGACIQCSNTTCRVAYHPLCARAAGLC 796 (1112)
Q Consensus 758 ~~~~~C~iC~~-~~Ga~iqC~~~~C~~~FH~~CA~~aG~~ 796 (1112)
.+-.+|..|.+ -.|..+|=. . ..|||+||+=..+.
T Consensus 190 ~fgvkc~~c~~fisgkvLqag--~--kh~HPtCARCsRCg 225 (670)
T KOG1044|consen 190 KFGVKCEECEKFISGKVLQAG--D--KHFHPTCARCSRCG 225 (670)
T ss_pred hcCeehHHhhhhhhhhhhhcc--C--cccCcchhhhhhhc
Confidence 44557888765 355555533 2 78999999876554
No 90
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=60.23 E-value=24 Score=35.39 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=32.0
Q ss_pred eeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEE
Q 001263 245 QCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKF 292 (1112)
Q Consensus 245 ~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~ 292 (1112)
.|...| +..||.|++.+.+....+-.|+++||. . .+.++.+..
T Consensus 15 avW~~~--~~~yYPa~~~~~~~~~~~~~V~Fedg~-~--~i~~~dv~~ 57 (131)
T PF08605_consen 15 AVWAGY--NLKYYPATCVGSGVDRDRSLVRFEDGT-Y--EIKNEDVKY 57 (131)
T ss_pred ceeecC--CCeEeeEEEEeecCCCCeEEEEEecCc-e--EeCcccEee
Confidence 344444 889999999999887878999999998 3 334444544
No 91
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=58.63 E-value=9.1 Score=46.80 Aligned_cols=52 Identities=21% Similarity=0.551 Sum_probs=37.0
Q ss_pred eeEEccCCCccccccccCCcCCCCCCceecccccCCCCC--------C-CCCcccCCCCCCCcee
Q 001263 664 LFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPE--------P-PPPCCLCPVVGGAMKP 719 (1112)
Q Consensus 664 ~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~--------~-~~~C~LC~~~gGalK~ 719 (1112)
.|++|..|.......|... .. +.|||+.|....+. . ...|+-||.=.+.|.-
T Consensus 4 ~L~fC~~C~~irc~~c~~~--Ei--~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~ 64 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSE--EI--DSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV 64 (483)
T ss_pred cceecccccccCChhhccc--cc--ceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence 5889999999888888652 22 37999999875432 1 2378999976666653
No 92
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.22 E-value=7.1 Score=42.12 Aligned_cols=42 Identities=26% Similarity=0.823 Sum_probs=32.2
Q ss_pred CccccccCCc---ccCCCeeEEccCCCccccccccCCcCCCCCCceecccccC
Q 001263 649 DKCSVCHMDE---EYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 649 ~~C~VC~~~~---~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~ 698 (1112)
.+|.+|...+ ..+.+..+.|.+|+..+|..|+.- .. |+.|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~~----CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----KS----CPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----CC----CCCcHh
Confidence 5899998754 234456789999999999999972 11 999974
No 93
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=57.16 E-value=7 Score=38.39 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=34.5
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~ 698 (1112)
...|..|.....--.|.-..|..|...|-..|-.. ......|+|..|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 35899998754333444588999999999999664 22334899999974
No 94
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.79 E-value=4.5 Score=49.77 Aligned_cols=108 Identities=22% Similarity=0.386 Sum_probs=61.8
Q ss_pred cCccccCCCChhHHH--HhhccCCCCCCCcccccccccccCCCCCCCcCCcccccCcCccccccCCcccCCCeeEEccCC
Q 001263 594 SGSDMFGFSNPEVMK--LILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKC 671 (1112)
Q Consensus 594 sG~~~FGls~P~V~k--lIqsLp~a~~~~k~~~~k~~s~~~~lp~g~~~~~~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C 671 (1112)
-..+.||.....+++ ..+.|+.+.+-. +...+-.+-.-+.|++. .....-|.+|+..-+. --++|..|
T Consensus 1068 ca~raFGtCSKAfmkLe~~e~l~~a~kq~------ye~La~~iFsk~~p~d~-~~~~vdc~~cg~~i~~---~~~~c~ec 1137 (1189)
T KOG2041|consen 1068 CAVRAFGTCSKAFMKLEAFEELDDAEKQE------YENLAFRIFSKNPPVDP-NSAKVDCSVCGAKIDP---YDLQCSEC 1137 (1189)
T ss_pred hhhhhhhhhHHHHHHHHhhhhCCHHHHHH------HHHHHHHHhccCCCCCC-CccceeeeecCCcCCc---cCCCChhh
Confidence 345788988888876 456677665421 11111112222223332 2334679999874322 23789999
Q ss_pred CccccccccCCcC-CCCCCceecccccCCCCCC----CCCcccCCC
Q 001263 672 RMMVHARCYGELE-PVNGVLWLCNLCRPGAPEP----PPPCCLCPV 712 (1112)
Q Consensus 672 ~~~VH~~CYG~~~-~~~~~~W~C~~C~~~~~~~----~~~C~LC~~ 712 (1112)
+..+- .|..... +.+..-|+|..|....... -..|.||-.
T Consensus 1138 ~~kfP-~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1138 QTKFP-VCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred cCcCc-eeeccCCccccceEEEccccccccccccccccccCccccC
Confidence 88764 5654322 2334479999999865432 235677754
No 95
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=56.66 E-value=12 Score=47.09 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=34.7
Q ss_pred cCceeEEEccC----CCCeeeEEEEEeeCCC--------CeEEEEccCCCccccc
Q 001263 242 IGLQCKVYWPL----DADWYSGFVVGYDSES--------NRHHVKYVDGDEEDLI 284 (1112)
Q Consensus 242 vg~~~~v~wp~----d~~~y~g~v~~~~~~~--------~~h~v~Yddg~~e~l~ 284 (1112)
.+-+++|||-+ |.+|++|+|.+.-+.. .+..|+||.++.|.+.
T Consensus 981 ~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~s 1035 (1113)
T KOG0644|consen 981 CRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHS 1035 (1113)
T ss_pred cccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccC
Confidence 68899999976 5789999999866544 4789999999666544
No 96
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=55.97 E-value=20 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=30.0
Q ss_pred cCceeEEEccCCCCeeeEEEEEeeCCCC--eEEEEccC
Q 001263 242 IGLQCKVYWPLDADWYSGFVVGYDSESN--RHHVKYVD 277 (1112)
Q Consensus 242 vg~~~~v~wp~d~~~y~g~v~~~~~~~~--~h~v~Ydd 277 (1112)
||.+|.+.| .+..||+|+|..-....+ +..|.|..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g 39 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQG 39 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETT
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCC
Confidence 899999999 999999999999887654 67777773
No 97
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=55.92 E-value=12 Score=49.25 Aligned_cols=92 Identities=29% Similarity=0.455 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEec-cCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCC------EEEeeCCCcccccccccccc
Q 001263 332 QELEPGDIIWAKL-TGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHD------FARINVKQVISFLKGLLSSF 404 (1112)
Q Consensus 332 ~~f~~GdlVWaK~-~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~------~awv~~~~l~~f~~~~~~~~ 404 (1112)
..|..|++||++. ++.+.|||++.++..-.. ..........-..|.||+... ++|+..-.+.+|..- ...+
T Consensus 190 ~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~~~-~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~-~~~~ 267 (1005)
T KOG1080|consen 190 EEFTVGDLVWAKSGRNEPPWPAIVIDPIRQAP-RGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRP-VRPF 267 (1005)
T ss_pred cccccchhhhcccccCCcccccceeehhhcch-hhhhccCcchhhhheeeeccCCccccchhhhhhccccccchh-hhhc
Confidence 3588999999995 578888898887543333 122222222334577887543 699999999998753 2222
Q ss_pred cc-----cCChHHHHHHHHHHHHHHH
Q 001263 405 HL-----KCKKPRFTQSLEEAKVYLS 425 (1112)
Q Consensus 405 ~~-----k~k~~~f~~Al~Ea~~~~~ 425 (1112)
.. ..+...|++++++|..+..
T Consensus 268 ~~~~~~~~~~~~~~e~~~~~~~~~e~ 293 (1005)
T KOG1080|consen 268 QDQTELKREKARSFEQALEEAGLAEQ 293 (1005)
T ss_pred cccccccccCccchhHHHHHhhcccc
Confidence 22 2455899999999865543
No 98
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=54.87 E-value=5 Score=32.16 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=25.3
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGE 682 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~ 682 (1112)
...|.+|...-.... .-+.|..|++.+|..|...
T Consensus 11 ~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCC-CCcCCCCCCchHHHHHHhh
Confidence 358999987532211 3578999999999999863
No 99
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.42 E-value=7.9 Score=34.90 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=22.9
Q ss_pred CcCccccccCC--cccCCCeeEEccCCCccccccccCCcCCCCCCceecccccC
Q 001263 647 DLDKCSVCHMD--EEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 647 ~~~~C~VC~~~--~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~ 698 (1112)
+..+|.||+.. -..+++.++.|..|+..|-..||--.. -+| .-.|+.|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-keg-~q~CpqCkt 59 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-KEG-NQVCPQCKT 59 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-HTS--SB-TTT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-hcC-cccccccCC
Confidence 34699999874 245567899999999999999996322 223 567888874
No 100
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=48.32 E-value=18 Score=39.27 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=29.8
Q ss_pred cCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEcc
Q 001263 242 IGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYV 276 (1112)
Q Consensus 242 vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd 276 (1112)
||.+|.+-|++|..||.++|...++.++.-.|.++
T Consensus 93 vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~ 127 (262)
T KOG3026|consen 93 VGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA 127 (262)
T ss_pred cCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence 99999999999999999999999887555555544
No 101
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.32 E-value=8.1 Score=38.14 Aligned_cols=53 Identities=34% Similarity=0.739 Sum_probs=37.5
Q ss_pred cCcCccccccCCcccCCCeeEEccCCCccccccccCCcCC-CCCCceecccccCC
Q 001263 646 KDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEP-VNGVLWLCNLCRPG 699 (1112)
Q Consensus 646 ~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~-~~~~~W~C~~C~~~ 699 (1112)
.++..|.||....-.+ ..=-.|.-|++.+.+.|-|-... ....-|.|..|...
T Consensus 63 ~ddatC~IC~KTKFAD-G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD-GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhccccc-ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 3567999998754332 23457999999999999884332 23447999999753
No 102
>PF11764 N-SET: COMPASS (Complex proteins associated with Set1p) component N; InterPro: IPR024657 The COMPASS complex (complex proteins associated with Set1p) is conserved in yeasts and in other eukaryotes up to humans. The COMPASS complex functions to methylate the fourth lysine of Histone 3 and for the silencing of genes close to the telomeres of chromosomes []. Five domains are conserved in Saccharomyces cerevisiae Set1 and other eukaryotic Set1-related proteins: an amino-terminal RNA-recognition motif (RRM), a semi-conserved central domain, an N-SET domain, the catalytic SET domain, and the C-terminal post-SET domain. This entry represents the N-SET domain, which promotes trimethylation in conjunction with the RRM domain [] and is necessary for binding of the Spp1 component of COMPASS into the complex [].; PDB: 3UVO_B 4ES0_C 3UVN_D 4EWR_C.
Probab=47.00 E-value=5.1 Score=41.93 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=6.0
Q ss_pred CCCCCCccccCccccc
Q 001263 855 PSNPSGCARSEPYNYF 870 (1112)
Q Consensus 855 ~~NpsGCARsEpy~~~ 870 (1112)
..|++||||+|||+.+
T Consensus 78 ~~h~TGsARtEGy~KI 93 (167)
T PF11764_consen 78 VPHSTGSARTEGYYKI 93 (167)
T ss_dssp -----SSHHHH-----
T ss_pred ccCCCcCcccccceeC
Confidence 4588999999999744
No 103
>PHA02862 5L protein; Provisional
Probab=46.74 E-value=6.9 Score=39.37 Aligned_cols=50 Identities=28% Similarity=0.606 Sum_probs=35.1
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCC
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVG 714 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~g 714 (1112)
+.|-||...++++. ---.|.|-..-||+.|+. .|+ .......|.+|....
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~--------~WI-------n~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQ--------LWI-------NYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHH--------HHH-------hcCCCcCccCCCCeE
Confidence 58999998765443 356788999999999986 565 112234677776544
No 104
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=46.02 E-value=1.3e+02 Score=33.56 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=63.6
Q ss_pred CccCceeEEEc---cCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEEEecchhhhhhhhcccccCCCCCCC
Q 001263 240 AFIGLQCKVYW---PLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGY 316 (1112)
Q Consensus 240 ~~vg~~~~v~w---p~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 316 (1112)
.+.|-.|..+- -.|..|.-..|+.|+..+..-..+-|+--.++..++..++=- . -+..++ .
T Consensus 128 ~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yk-l---p~~~~~------p------ 191 (264)
T KOG3038|consen 128 LLKGDEVAARVKAVSEDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYK-L---PRWKLN------P------ 191 (264)
T ss_pred ccCCceeeeeeeeccCCCCEEEEEEEEEecCCceEeEecCCCccccccccccceec-c---cHhhcC------C------
Confidence 34555555544 256679999999999999744444443333333343332211 0 011111 0
Q ss_pred CchhHHhhhcccccCCCCCCCcEEEEeccCcC-CCCceeecCccccCccccccCCCCCcEEEEEeCCCC
Q 001263 317 DYDEMVVLAASLDDCQELEPGDIIWAKLTGHA-MWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHD 384 (1112)
Q Consensus 317 ~~de~~~~a~~~~~~~~f~~GdlVWaK~~GyP-wWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~ 384 (1112)
.+ .--.-|.+|.+|+|...|-- ..+|+|..++ +.....|.|.||.+..
T Consensus 192 ~p----------~p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp----------~d~s~~y~vlffD~~e 240 (264)
T KOG3038|consen 192 IP----------PPTALFPPGTIVLAVYPGTTCFYKAIVHSTP----------RDGSCDYYVLFFDDEE 240 (264)
T ss_pred CC----------CCccCCCCCCEEEEEcCCcceeeeeEeecCC----------CCCCCcceeeeecCcc
Confidence 00 01235999999999988754 6789997743 2334558899997754
No 105
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=45.94 E-value=9.9 Score=45.15 Aligned_cols=14 Identities=43% Similarity=0.983 Sum_probs=12.0
Q ss_pred CCCceeeeeccccc
Q 001263 721 TDGRWAHLACAIWI 734 (1112)
Q Consensus 721 ~~g~WvHv~Cal~~ 734 (1112)
.+|.|+|+-||+-.
T Consensus 151 ~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 151 VCGHWCHLDCALRH 164 (446)
T ss_pred CCCceehhhhhccc
Confidence 47899999999964
No 106
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.74 E-value=0.81 Score=60.91 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=52.0
Q ss_pred CCCCCccCceeEEEccCCCCeeeE-EEEEeeCCCCeEEEEccCCCccccccccceEEEE
Q 001263 236 VDPKAFIGLQCKVYWPLDADWYSG-FVVGYDSESNRHHVKYVDGDEEDLILSNERIKFY 293 (1112)
Q Consensus 236 ~~~~~~vg~~~~v~wp~d~~~y~g-~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~ 293 (1112)
+-..++||..+..|||.|.+||.| .|..|+-....|.+.|++++.+..++....|+-+
T Consensus 983 ~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~~~n~~~~~~~~~ 1041 (1266)
T KOG1525|consen 983 AHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEENENNQHKFWKRE 1041 (1266)
T ss_pred hhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhhhccchhHHHHHH
Confidence 345789999999999999999999 8888999999999999999999999987777653
No 107
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=41.48 E-value=15 Score=46.49 Aligned_cols=32 Identities=28% Similarity=0.640 Sum_probs=26.6
Q ss_pred ccceeecCcCceeeecCCCCCCccccccchhhcCc
Q 001263 761 LLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGL 795 (1112)
Q Consensus 761 ~~C~iC~~~~Ga~iqC~~~~C~~~FH~~CA~~aG~ 795 (1112)
..|.+|+. +|-.+-|. .|..+||..|.-..+.
T Consensus 48 e~c~ic~~-~g~~l~c~--tC~~s~h~~cl~~pl~ 79 (696)
T KOG0383|consen 48 EACRICAD-GGELLWCD--TCPASFHASCLGPPLT 79 (696)
T ss_pred hhhhhhcC-CCcEEEec--cccHHHHHHccCCCCC
Confidence 47999998 67788888 9999999999855544
No 108
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=41.16 E-value=15 Score=45.09 Aligned_cols=49 Identities=27% Similarity=0.851 Sum_probs=36.7
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
..|. |...++. +..++.|+.|+...|..|+|......-+.+.|..|...
T Consensus 87 ~~c~-c~~~~~~-~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~ 135 (508)
T KOG1844|consen 87 SRCD-CGLEDDM-EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPR 135 (508)
T ss_pred cccc-cccccCC-CceeeCCcccCcccCceeeeecCCCCchhceeeeeccc
Confidence 3454 7765542 57899999999999999999754433347999999864
No 109
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=38.97 E-value=24 Score=42.08 Aligned_cols=31 Identities=23% Similarity=0.666 Sum_probs=23.2
Q ss_pred ccccccCCccc-CCCeeEEccCCCcccccccc
Q 001263 650 KCSVCHMDEEY-QNNLFLQCDKCRMMVHARCY 680 (1112)
Q Consensus 650 ~C~VC~~~~~~-~~n~ll~Cd~C~~~VH~~CY 680 (1112)
-|.||...+.. ++-.-|.||-|+...|..|-
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh
Confidence 67788775432 33358899999999999994
No 110
>COG5475 Uncharacterized small protein [Function unknown]
Probab=38.96 E-value=68 Score=27.22 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=40.5
Q ss_pred CCCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCC--CEEEeeCCCcccccc
Q 001263 332 QELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTH--DFARINVKQVISFLK 398 (1112)
Q Consensus 332 ~~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~--~~awv~~~~l~~f~~ 398 (1112)
..|..||+|-.|-.| |+|++.. -..++.|..+||.-. .++-.+++.|+|+..
T Consensus 3 ~~FstgdvV~lKsGG----P~Mtvs~-----------~ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~a 56 (60)
T COG5475 3 MSFSTGDVVTLKSGG----PRMTVSG-----------YSSDGMYECRWFDGYGVKREAFHEDELVPGEA 56 (60)
T ss_pred ceeecCcEEEeecCC----ceEEEec-----------cccCCeEEEEEecCCCcccccccccceecccc
Confidence 358999999999998 8898763 123478999999753 377788889988865
No 111
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=38.81 E-value=14 Score=35.40 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=27.2
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYG 681 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG 681 (1112)
.+.|+||+..+......-|.|..|++.++..=.|
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 3599999876665556677899999999987666
No 112
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=38.49 E-value=25 Score=38.70 Aligned_cols=35 Identities=29% Similarity=0.678 Sum_probs=28.5
Q ss_pred ccccCccceeecC-cCceeeecCCCCCCc-cccccch
Q 001263 756 KDRWKLLCSICGV-SYGACIQCSNTTCRV-AYHPLCA 790 (1112)
Q Consensus 756 ~~~~~~~C~iC~~-~~Ga~iqC~~~~C~~-~FH~~CA 790 (1112)
........++|++ +.|-||-|...+|.. |||..|.
T Consensus 216 ~se~e~lYCfCqqvSyGqMVaCDn~nCkrEWFH~~CV 252 (271)
T COG5034 216 NSEGEELYCFCQQVSYGQMVACDNANCKREWFHLECV 252 (271)
T ss_pred cccCceeEEEecccccccceecCCCCCchhheecccc
Confidence 3344557789987 699999999999975 7999996
No 113
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=38.06 E-value=15 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=22.9
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccC
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYG 681 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG 681 (1112)
+.|.||...-.. ++.++... |+-.||..|+.
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~-C~H~fh~~Ci~ 31 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLP-CGHVFHRSCIK 31 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEET-TSEEEEHHHHH
T ss_pred CCCcCCChhhcC-CCeEEEcc-CCCeeCHHHHH
Confidence 369999987644 34455555 99999999986
No 114
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=37.18 E-value=24 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.744 Sum_probs=19.8
Q ss_pred CccccccCCcccCCCeeEEccCCCcc
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMM 674 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~ 674 (1112)
..|.+|.......++-..+|+.|+-.
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceE
Confidence 45999998765556668899999854
No 115
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=36.97 E-value=16 Score=45.69 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=50.6
Q ss_pred CceecccccCCCCCCCCCcccCCCCCCCceecC--CC-ceeeeeccccccceEecC--CCCCccccccccccccccCccc
Q 001263 689 VLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTT--DG-RWAHLACAIWIPETCLTD--VKRMEPIDGLNRVSKDRWKLLC 763 (1112)
Q Consensus 689 ~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~--~g-~WvHv~Cal~~pe~~f~~--~~~~~pi~~i~~i~~~~~~~~C 763 (1112)
+..||..|...-....-.|-+|....+-++... .+ .||-++=.-- .+-.... ...-+++.+. ....-.|
T Consensus 145 ~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EE-s~~~~e~~~d~~~d~~~~~-----~~E~~~C 218 (1134)
T KOG0825|consen 145 AHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEE-SENILEKGGDEKQDQISGL-----SQEEVKC 218 (1134)
T ss_pred ccccHHHHhhhhhhhcccCchhhhhhheeeeeccccccceeEecchhh-hhhhhhhccccccccccCc-----ccccccc
Confidence 479999997644333335777765555444322 22 4544221100 0000000 0011112111 1123479
Q ss_pred eeecCc--CceeeecCCCCCCcc-ccccchhh
Q 001263 764 SICGVS--YGACIQCSNTTCRVA-YHPLCARA 792 (1112)
Q Consensus 764 ~iC~~~--~Ga~iqC~~~~C~~~-FH~~CA~~ 792 (1112)
.||... .-.+|.|. .|... ||..|--.
T Consensus 219 ~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDP 248 (1134)
T KOG0825|consen 219 DICTVHDPEDVLLLCD--SCNKVYYHVYCLDP 248 (1134)
T ss_pred eeeccCChHHhheeec--ccccceeeccccCc
Confidence 999974 56899999 99999 99999754
No 116
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=36.20 E-value=36 Score=34.11 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEEeccCcCC---------CCceeecCccccCccccccCCCCCcEEEEEeCCCC
Q 001263 331 CQELEPGDIIWAKLTGHAM---------WPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHD 384 (1112)
Q Consensus 331 ~~~f~~GdlVWaK~~GyPw---------WPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~ 384 (1112)
+..+++||.|..+-.+-.- ||+.|........ ...+...++|+||-...
T Consensus 3 ~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e-----~~~g~~~~h~~W~yrp~ 60 (130)
T cd04712 3 GLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKK-----GSDGSKMFHGRWLYRGC 60 (130)
T ss_pred CCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeee-----cCCCceEEEEEEEEcch
Confidence 4568999999999887653 6777776433322 22344578899885433
No 117
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.18 E-value=28 Score=29.48 Aligned_cols=35 Identities=31% Similarity=0.789 Sum_probs=30.2
Q ss_pred ccceeecCc---CceeeecCCCCCCccccccchhhcCceE
Q 001263 761 LLCSICGVS---YGACIQCSNTTCRVAYHPLCARAAGLCV 797 (1112)
Q Consensus 761 ~~C~iC~~~---~Ga~iqC~~~~C~~~FH~~CA~~aG~~~ 797 (1112)
..|.+|+.. ++-.+.|- .|.+.||-.|...+|-+.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~ 43 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCI 43 (54)
T ss_pred ccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceE
Confidence 479999974 67889998 999999999999988764
No 118
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=35.88 E-value=17 Score=33.60 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=30.4
Q ss_pred CcCccccccCCcc---------cCCCeeEEccCCCccccccccC--CcCCCCCCceecccccC
Q 001263 647 DLDKCSVCHMDEE---------YQNNLFLQCDKCRMMVHARCYG--ELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 647 ~~~~C~VC~~~~~---------~~~n~ll~Cd~C~~~VH~~CYG--~~~~~~~~~W~C~~C~~ 698 (1112)
+++.|.||+...+ .++-+|+.+. |+-.||..|.- +... .. .=.|+.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~-~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SS-KGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cC-CCCCCCcCC
Confidence 4678888876433 1233566555 99999999975 2221 11 236777764
No 119
>PLN02436 cellulose synthase A
Probab=35.20 E-value=37 Score=44.74 Aligned_cols=51 Identities=24% Similarity=0.597 Sum_probs=38.7
Q ss_pred CcCccccccCCc--ccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 647 DLDKCSVCHMDE--EYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 647 ~~~~C~VC~~~~--~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
...+|.||+..- ..+++.+|-|.-|+..|...||-- +.-+| .=.|+.|+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg-~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREG-NQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcC-CccCcccCCc
Confidence 345999998752 456678999999999999999942 22334 6789999753
No 120
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=35.12 E-value=35 Score=38.71 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=64.5
Q ss_pred CccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCceeee
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHL 728 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvHv 728 (1112)
-.|--|.-... ...+|-.|....|..=-++...... .|.|+.|..... .|.+=+...+..+ -+.+.|.|-
T Consensus 56 ~sClTC~P~~~----~agvC~~C~~~CH~~H~lveL~tKR-~FrCDCg~sk~g----~~sc~l~~~~~~~-n~~N~YNhN 125 (345)
T KOG2752|consen 56 FSCLTCTPAPE----MAGVCYACSLSCHDGHELVELYTKR-NFRCDCGNSKFG----RCSCNLLEDKDAE-NSENLYNHN 125 (345)
T ss_pred eEeecccCChh----hceeEEEeeeeecCCceeeeccccC-Cccccccccccc----ccccccccccccc-cchhhhhhh
Confidence 35666654322 5678999999999876665444444 899998876433 2222123333333 334456664
Q ss_pred eccccccceEecCCCCCccccccccccccccCccceeecCcCceeeecCCCCCCcccc-ccchhhcCce
Q 001263 729 ACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYH-PLCARAAGLC 796 (1112)
Q Consensus 729 ~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~~Ga~iqC~~~~C~~~FH-~~CA~~aG~~ 796 (1112)
+=.++. .-+.....|+.. -.|.++||. -|..||| -.|-+...+.
T Consensus 126 fqG~~C----~Cd~~Ypdp~~~------------------~e~~m~QC~--iCEDWFHce~c~~~~~~~ 170 (345)
T KOG2752|consen 126 FQGLFC----KCDTPYPDPVRT------------------EEGEMLQCV--ICEDWFHCEGCMQAKTFL 170 (345)
T ss_pred hcceeE----EecCCCCCcccc------------------ccceeeeEE--eccchhcccccCcccchh
Confidence 333321 001111111211 268899999 8999999 6776665554
No 121
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=34.01 E-value=15 Score=29.47 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=16.5
Q ss_pred ceeecCcCceeeecCCCCCCccccccchhh
Q 001263 763 CSICGVSYGACIQCSNTTCRVAYHPLCARA 792 (1112)
Q Consensus 763 C~iC~~~~Ga~iqC~~~~C~~~FH~~CA~~ 792 (1112)
|.+|+...-.-+.|....|...+|..|+..
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHH
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHH
Confidence 567776555557899889999999999865
No 122
>PLN02400 cellulose synthase
Probab=32.46 E-value=49 Score=43.78 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=38.7
Q ss_pred CcCccccccCC--cccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 647 DLDKCSVCHMD--EEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 647 ~~~~C~VC~~~--~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
+..+|.||+.. -..+++.+|-|.-|+..|-.-||-- +--+| .=.|+.|+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeG-nq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDG-TQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccC-CccCcccCCc
Confidence 34599999874 2355678999999999999999942 22334 6789999864
No 123
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=32.13 E-value=23 Score=44.31 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred cceeecCcCceeeecCCCCCCccccccch-hhcCceE
Q 001263 762 LCSICGVSYGACIQCSNTTCRVAYHPLCA-RAAGLCV 797 (1112)
Q Consensus 762 ~C~iC~~~~Ga~iqC~~~~C~~~FH~~CA-~~aG~~~ 797 (1112)
.|..|-..+|++-.=. .=..|-|+.|| |.-.+.|
T Consensus 325 pCvLCPkkGGamK~~~--sgT~wAHvsCALwIPEVsi 359 (893)
T KOG0954|consen 325 PCVLCPKKGGAMKPTK--SGTKWAHVSCALWIPEVSI 359 (893)
T ss_pred CeeeccccCCcccccC--CCCeeeEeeeeeccceeec
Confidence 6999998888876544 33488999999 4445544
No 124
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.90 E-value=28 Score=39.60 Aligned_cols=87 Identities=17% Similarity=0.456 Sum_probs=51.7
Q ss_pred CCCCceecccccCCCCCCCCCcccCCCCCCCceecCCCceeeeeccccccceEecCCCCCccccccccccccccC--ccc
Q 001263 686 VNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWK--LLC 763 (1112)
Q Consensus 686 ~~~~~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~--~~C 763 (1112)
+.+..++|+.|....-.....|-.|...--. +. |+.= ....+-|+..+..++..... ..|
T Consensus 272 ~~~~Gy~CP~CkakvCsLP~eCpiC~ltLVs---s~-----hLAR----------SyhhL~PL~~F~Eip~~~~~~~~~C 333 (378)
T KOG2807|consen 272 LSGGGYFCPQCKAKVCSLPIECPICSLTLVS---SP-----HLAR----------SYHHLFPLKPFVEIPETEYNGSRFC 333 (378)
T ss_pred cccCceeCCcccCeeecCCccCCccceeEec---ch-----HHHH----------HHHhhcCCcchhhccccccCCCcce
Confidence 4455899999997655556678888733211 00 0000 01223455555566655432 349
Q ss_pred eeecC--cCceeeecCCCCCCccccccchhh
Q 001263 764 SICGV--SYGACIQCSNTTCRVAYHPLCARA 792 (1112)
Q Consensus 764 ~iC~~--~~Ga~iqC~~~~C~~~FH~~CA~~ 792 (1112)
..|+. ..+...+|. .|...|=.-|-..
T Consensus 334 f~C~~~~~~~~~y~C~--~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 334 FACQGELLSSGRYRCE--SCKNVFCLDCDVF 362 (378)
T ss_pred eeeccccCCCCcEEch--hccceeeccchHH
Confidence 99943 356678998 8988887777643
No 125
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=31.69 E-value=55 Score=39.41 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=46.0
Q ss_pred cccCCCCCCCcEEEEeccCcCCC-CceeecCccccCccccccCCCCCcEEEEEeCCCCE--EEeeCCCcc
Q 001263 328 LDDCQELEPGDIIWAKLTGHAMW-PAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDF--ARINVKQVI 394 (1112)
Q Consensus 328 ~~~~~~f~~GdlVWaK~~GyPwW-Pa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~--awv~~~~l~ 394 (1112)
......|.+|+.|.++..+-+-| +|.|++-.... ....+...|.|+|-|.+.+ -||..++|.
T Consensus 48 ~~~~~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~-----~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 48 PGVMLPLEVGTRVMCRWRFDGKYHPVKVIERRRGG-----SGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred CCccceeccCCEEEEEECCCCCEEEEEEEEEeccC-----CCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 33344699999999999988877 99998753211 0112334699999999987 999999884
No 126
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=31.59 E-value=32 Score=45.37 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=38.5
Q ss_pred CcCccccccCC--cccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 647 DLDKCSVCHMD--EEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 647 ~~~~C~VC~~~--~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
+..+|.||+.. -..+++.+|-|.-|+..|...||- -+--+| .=-|+.|+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG-~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDG-NQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcC-CccCCccCCc
Confidence 34599999874 234567899999999999999994 223344 6789999753
No 127
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=31.06 E-value=37 Score=31.24 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCCcccCCCCCCCceecC---CCceeeeeccccccc
Q 001263 704 PPPCCLCPVVGGAMKPTT---DGRWAHLACAIWIPE 736 (1112)
Q Consensus 704 ~~~C~LC~~~gGalK~t~---~g~WvHv~Cal~~pe 736 (1112)
...|.+|..++||..... +....|+.||+...-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCe
Confidence 458999999977776653 678999999997543
No 128
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.75 E-value=19 Score=26.38 Aligned_cols=27 Identities=33% Similarity=0.775 Sum_probs=12.1
Q ss_pred cceeecCcCc--eeeecCCCCCCccccccch
Q 001263 762 LCSICGVSYG--ACIQCSNTTCRVAYHPLCA 790 (1112)
Q Consensus 762 ~C~iC~~~~G--a~iqC~~~~C~~~FH~~CA 790 (1112)
.|..|+.... ....|. .|.-.+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS--ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T--TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc--cCCCccChhcC
Confidence 5888988644 577887 89999999997
No 129
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.51 E-value=13 Score=43.76 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=46.9
Q ss_pred cCccccccCCcccCCCeeEEccCCCccccccccCCc--------CCCCC---------------CceecccccCCCCCCC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGEL--------EPVNG---------------VLWLCNLCRPGAPEPP 704 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~--------~~~~~---------------~~W~C~~C~~~~~~~~ 704 (1112)
..+|+-|-..--.=+-+=.+|.-|...||+.|.-.. .-++. .+-||+.|-.-.
T Consensus 56 PTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCGsLL---- 131 (683)
T KOG0696|consen 56 PTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCGSLL---- 131 (683)
T ss_pred CchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceeeeecCCCchhhhHHHHH----
Confidence 368999964211111245799999999999997421 11111 123444443210
Q ss_pred CCcccCCCCCCCceecCCCceeeeeccccccceE
Q 001263 705 PPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETC 738 (1112)
Q Consensus 705 ~~C~LC~~~gGalK~t~~g~WvHv~Cal~~pe~~ 738 (1112)
=+...--||...+..-||-.|..-+|...
T Consensus 132 -----yGl~HQGmKC~~C~mNVH~rCv~nVPslC 160 (683)
T KOG0696|consen 132 -----YGLIHQGMKCDTCDMNVHHRCVENVPSLC 160 (683)
T ss_pred -----HHHHhcccccccccchHHHHHhhcCCccc
Confidence 01222346777777788888888777654
No 130
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=30.43 E-value=18 Score=29.53 Aligned_cols=30 Identities=33% Similarity=0.791 Sum_probs=18.1
Q ss_pred cccccCCcccCCCeeEEccCCCc---cccccccC
Q 001263 651 CSVCHMDEEYQNNLFLQCDKCRM---MVHARCYG 681 (1112)
Q Consensus 651 C~VC~~~~~~~~n~ll~Cd~C~~---~VH~~CYG 681 (1112)
|-||...++.++..+--|. |.. .||+.|+-
T Consensus 1 CrIC~~~~~~~~~li~pC~-C~Gs~~~vH~~CL~ 33 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCR-CKGSMKYVHRSCLE 33 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS--SSCCGSEECCHHH
T ss_pred CeEeCCcCCCCCceecccc-cCCCcchhHHHHHH
Confidence 6789887665442333443 554 99999985
No 131
>PF12773 DZR: Double zinc ribbon
Probab=30.27 E-value=40 Score=27.51 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=22.7
Q ss_pred eEEccCCCccccccccCCcCCCCCCceecccccCCCCCCCCCcccC
Q 001263 665 FLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLC 710 (1112)
Q Consensus 665 ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~~~~~~~~C~LC 710 (1112)
..+|..|+..+- ......++|..|..........|.-|
T Consensus 12 ~~fC~~CG~~l~--------~~~~~~~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 12 AKFCPHCGTPLP--------PPDQSKKICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred ccCChhhcCChh--------hccCCCCCCcCCcCCCcCCcCccCcc
Confidence 456777776665 22334678888876554444455555
No 132
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=29.62 E-value=28 Score=33.42 Aligned_cols=30 Identities=27% Similarity=0.690 Sum_probs=25.3
Q ss_pred cCccccccCCcccCCCeeEEccC--CCccccccccC
Q 001263 648 LDKCSVCHMDEEYQNNLFLQCDK--CRMMVHARCYG 681 (1112)
Q Consensus 648 ~~~C~VC~~~~~~~~n~ll~Cd~--C~~~VH~~CYG 681 (1112)
...|.+|.... ...+.|.. |...+|..|.-
T Consensus 55 ~~~C~iC~~~~----G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSG----GACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCC----ceeEEcCCCCCCcCCCHHHHH
Confidence 36999999864 35899998 99999999963
No 133
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=29.43 E-value=28 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=18.2
Q ss_pred ceecccccCCCCCCCCCcccCCC
Q 001263 690 LWLCNLCRPGAPEPPPPCCLCPV 712 (1112)
Q Consensus 690 ~W~C~~C~~~~~~~~~~C~LC~~ 712 (1112)
+|.|..|..........|..|..
T Consensus 2 ~W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 2 DWECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred cccCCCCCCcChhhhccccccCC
Confidence 79999998766555678988864
No 134
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=29.40 E-value=40 Score=44.69 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=47.2
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCcccccc------------------CCCCCcEEEEEeCCCC-EEEeeCCCcc
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNK------------------ISGGRSIPVQFFGTHD-FARINVKQVI 394 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~------------------~~~~~~~~V~FFG~~~-~awv~~~~l~ 394 (1112)
+.+=++||||..||||-|+.+.++.+.......+. +.....+.|.||...- .-|++...+.
T Consensus 943 l~~~~~~~akc~g~~s~~~l~l~p~~~~~~~~~~g~~~~p~~dv~~l~eq~~~~~~~~l~~~L~~~n~~~~~~~~~s~~~ 1022 (1051)
T KOG0955|consen 943 LEELKLVWAKCRGYPSYPALILDPKMPREGNFHNGPDPAPPTDVLALPEQRTNKAPETLFLVLFFDNKRCWQWLPRSKVL 1022 (1051)
T ss_pred eeehhceeehhcCCccchhhhcccccccccCccCCCCCCCCcccccchHHHhcccChhheEEEeecccccccccCCCCcc
Confidence 77888999999999999999998876655432111 1122445689998766 5899998877
Q ss_pred cccc
Q 001263 395 SFLK 398 (1112)
Q Consensus 395 ~f~~ 398 (1112)
+.--
T Consensus 1023 ~l~~ 1026 (1051)
T KOG0955|consen 1023 ELGV 1026 (1051)
T ss_pred cccc
Confidence 7643
No 135
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.15 E-value=35 Score=44.93 Aligned_cols=50 Identities=26% Similarity=0.600 Sum_probs=37.9
Q ss_pred cCccccccCC--cccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 648 LDKCSVCHMD--EEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 648 ~~~C~VC~~~--~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
..+|.||+.. -..+++.+|-|.-|+..|...||- -+.-+| .=.|+.|...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g-~~~cp~c~t~ 66 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEG-NQCCPQCNTR 66 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcC-CccCCccCCc
Confidence 4699999874 234567899999999999999994 223334 6789999753
No 136
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.89 E-value=1.1e+02 Score=25.89 Aligned_cols=41 Identities=32% Similarity=0.570 Sum_probs=28.0
Q ss_pred CCCCcEEEEeccCcCCCCceeecCccccCccccccCCCCCcEEEEEeCCCC
Q 001263 334 LEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHD 384 (1112)
Q Consensus 334 f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~ 384 (1112)
|++||+|--|-.| |.|++.. +.. ..-...+.+..+||..+.
T Consensus 1 f~~GDvV~LKSGG----p~MTV~~--v~~----~~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGG----PRMTVTE--VGP----NAGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCC----CCeEEEE--ccc----cccCCCCeEEEEeCCCCC
Confidence 7899999999999 6777652 111 011234668899998754
No 137
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=27.81 E-value=33 Score=29.13 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.6
Q ss_pred EEEEccCCCCCCeEE
Q 001263 1048 IIFAKRDIKQWEELT 1062 (1112)
Q Consensus 1048 ~i~A~RdI~~GEELT 1062 (1112)
+++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 479999999999996
No 138
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=42 Score=39.35 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=32.0
Q ss_pred CccccCCCC---CCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCC
Q 001263 1021 SIAHLINHS---CEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFF 1068 (1112)
Q Consensus 1021 n~aRfINHS---C~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~ 1068 (1112)
-++-|+||- |+.|..+ +.+.+-++|.|+|++|+|+.-.|+..
T Consensus 217 p~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~~ 261 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGLK 261 (466)
T ss_pred chhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccccC
Confidence 357789994 6666432 34667789999999999999999743
No 139
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=26.17 E-value=38 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=10.2
Q ss_pred CCCCCCCcEEEEec
Q 001263 331 CQELEPGDIIWAKL 344 (1112)
Q Consensus 331 ~~~f~~GdlVWaK~ 344 (1112)
.+-|+|||+|-||+
T Consensus 66 ~~~FrpGDIVrA~V 79 (82)
T PF10447_consen 66 YDCFRPGDIVRARV 79 (82)
T ss_dssp GGT--SSSEEEEEE
T ss_pred HhccCCCCEEEEEE
Confidence 45699999999997
No 140
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=25.90 E-value=33 Score=35.83 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=25.1
Q ss_pred ceecccccCCCCCCCCCcccCCCCCCCcee
Q 001263 690 LWLCNLCRPGAPEPPPPCCLCPVVGGAMKP 719 (1112)
Q Consensus 690 ~W~C~~C~~~~~~~~~~C~LC~~~gGalK~ 719 (1112)
.|-|..|.+......+.|++|..+.|.-.+
T Consensus 24 ~WdCsvCTFrNsAeAfkC~vCdvRKGTSTR 53 (228)
T KOG4477|consen 24 KWDCSVCTFRNSAEAFKCFVCDVRKGTSTR 53 (228)
T ss_pred ceeeeeeeecchhhhhheeeeccccccccc
Confidence 899999998766667899999998886543
No 141
>PLN02195 cellulose synthase A
Probab=25.86 E-value=41 Score=44.00 Aligned_cols=48 Identities=21% Similarity=0.549 Sum_probs=36.6
Q ss_pred CccccccCC--cccCCCeeEEccCCCccccccccCCcCCCCCCceecccccC
Q 001263 649 DKCSVCHMD--EEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRP 698 (1112)
Q Consensus 649 ~~C~VC~~~--~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~ 698 (1112)
.+|.||+.. -..+++.+|-|.-|+..|..-||- -+--+| .=-|+.|..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg-~q~CpqCkt 56 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEG-RKVCLRCGG 56 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcC-CccCCccCC
Confidence 589999873 344567899999999999999994 222334 667999975
No 142
>PLN02189 cellulose synthase
Probab=25.81 E-value=53 Score=43.36 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=38.4
Q ss_pred CcCccccccCCc--ccCCCeeEEccCCCccccccccCCcCCCCCCceecccccCC
Q 001263 647 DLDKCSVCHMDE--EYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPG 699 (1112)
Q Consensus 647 ~~~~C~VC~~~~--~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~~W~C~~C~~~ 699 (1112)
....|.||+..- ..+++.+|-|.-|+..|...||- -+.-+| .=.|+.|...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg-~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREG-TQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcC-CccCcccCCc
Confidence 345999998753 35567899999999999999994 222334 6789999753
No 143
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=24.69 E-value=25 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=16.6
Q ss_pred ceecccccCCCCCCCCCcccCCC
Q 001263 690 LWLCNLCRPGAPEPPPPCCLCPV 712 (1112)
Q Consensus 690 ~W~C~~C~~~~~~~~~~C~LC~~ 712 (1112)
.|.|..|..........|..|..
T Consensus 4 ~W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 4 DWKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp SEEETTTTEEEESSSSB-TTT--
T ss_pred CccCCCCcCCchHHhhhhhCcCC
Confidence 89999999866556678999863
No 144
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=24.35 E-value=1.2e+02 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=29.3
Q ss_pred cCceeEEEccCCCCeeeEEEEEeeCCC------CeEEEEcc
Q 001263 242 IGLQCKVYWPLDADWYSGFVVGYDSES------NRHHVKYV 276 (1112)
Q Consensus 242 vg~~~~v~wp~d~~~y~g~v~~~~~~~------~~h~v~Yd 276 (1112)
||.+|.++|..|..||.++|....... .+.-|.|.
T Consensus 56 VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~ 96 (450)
T PLN00104 56 VGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYT 96 (450)
T ss_pred cCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEe
Confidence 999999999999999999999987632 34666666
No 145
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=23.94 E-value=22 Score=32.29 Aligned_cols=31 Identities=32% Similarity=0.866 Sum_probs=25.4
Q ss_pred cceeecCc-CceeeecCC------------CCCCccccccchhh
Q 001263 762 LCSICGVS-YGACIQCSN------------TTCRVAYHPLCARA 792 (1112)
Q Consensus 762 ~C~iC~~~-~Ga~iqC~~------------~~C~~~FH~~CA~~ 792 (1112)
.|.||... .|.|++|.. +.|.-+||..|-.+
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 79999864 688888886 36999999999865
No 146
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=27 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=25.9
Q ss_pred CcCccccccCCcccCCCeeEEccC--CCccccccccC
Q 001263 647 DLDKCSVCHMDEEYQNNLFLQCDK--CRMMVHARCYG 681 (1112)
Q Consensus 647 ~~~~C~VC~~~~~~~~n~ll~Cd~--C~~~VH~~CYG 681 (1112)
....|.||.--.-++.-.-..|++ |+..|||.|+.
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~ 200 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLT 200 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHH
Confidence 345788887655444445568997 99999999984
No 147
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=23.16 E-value=1.1e+02 Score=26.15 Aligned_cols=25 Identities=12% Similarity=0.492 Sum_probs=18.6
Q ss_pred CCCCCCcEEEEeccCcCCC-Cceeec
Q 001263 332 QELEPGDIIWAKLTGHAMW-PAIVVD 356 (1112)
Q Consensus 332 ~~f~~GdlVWaK~~GyPwW-Pa~V~~ 356 (1112)
.+|..|++|-+|-.|-.-| +|+|.+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~ 29 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLS 29 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEE
Confidence 5799999999999998888 999976
No 148
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.87 E-value=38 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.685 Sum_probs=19.1
Q ss_pred ccccccCCcccCCCeeE-Ecc--CCCccccccccC
Q 001263 650 KCSVCHMDEEYQNNLFL-QCD--KCRMMVHARCYG 681 (1112)
Q Consensus 650 ~C~VC~~~~~~~~n~ll-~Cd--~C~~~VH~~CYG 681 (1112)
.|-||...+. +++.++ -|. |-...||+.|+-
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~ 34 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLE 34 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHH
Confidence 5889988333 334443 333 223679999985
No 149
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.40 E-value=39 Score=25.11 Aligned_cols=25 Identities=28% Similarity=0.797 Sum_probs=13.1
Q ss_pred CccccccCCcccCCCeeEEccCCCc
Q 001263 649 DKCSVCHMDEEYQNNLFLQCDKCRM 673 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~Cd~C~~ 673 (1112)
-.|-.|.+.....++.++.|..|+-
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCCcceeccCCEEeCCcccc
Confidence 3688898887777788888998863
No 150
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=21.34 E-value=66 Score=30.34 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=21.2
Q ss_pred CcCccccccCCcccCCCeeEEccCCCcccccccc
Q 001263 647 DLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCY 680 (1112)
Q Consensus 647 ~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CY 680 (1112)
+...|.||+..-.. ..++. --|+..||..|+
T Consensus 77 ~~~~C~vC~k~l~~--~~f~~-~p~~~v~H~~C~ 107 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN--SVFVV-FPCGHVVHYSCI 107 (109)
T ss_pred CCCCccCcCCcCCC--ceEEE-eCCCeEEecccc
Confidence 34689999985432 33333 356799999997
No 151
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=20.83 E-value=19 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=15.9
Q ss_pred eEEccCCCccccccccCCc
Q 001263 665 FLQCDKCRMMVHARCYGEL 683 (1112)
Q Consensus 665 ll~Cd~C~~~VH~~CYG~~ 683 (1112)
--.|.-|.+.||..|....
T Consensus 199 rRkCAaCkIVvHT~CieqL 217 (1004)
T KOG0782|consen 199 RRKCAACKIVVHTNCIEQL 217 (1004)
T ss_pred hccceeeeEEEechHHHHH
Confidence 4579999999999998643
No 152
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=20.71 E-value=46 Score=29.63 Aligned_cols=33 Identities=33% Similarity=0.699 Sum_probs=13.6
Q ss_pred ccceeecCc---Cc--eeeecCCCCCCccccccchhhc
Q 001263 761 LLCSICGVS---YG--ACIQCSNTTCRVAYHPLCARAA 793 (1112)
Q Consensus 761 ~~C~iC~~~---~G--a~iqC~~~~C~~~FH~~CA~~a 793 (1112)
..|.||... .+ .-+.|....|...||..|-...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 468899752 22 4578999999999999997543
No 153
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.61 E-value=66 Score=31.07 Aligned_cols=60 Identities=27% Similarity=0.543 Sum_probs=37.6
Q ss_pred CccccccCCcccCCCeeEEc------cCCCccccccccC-------C--cCCCCCCceecccccCCCCCCCCCcccCCCC
Q 001263 649 DKCSVCHMDEEYQNNLFLQC------DKCRMMVHARCYG-------E--LEPVNGVLWLCNLCRPGAPEPPPPCCLCPVV 713 (1112)
Q Consensus 649 ~~C~VC~~~~~~~~n~ll~C------d~C~~~VH~~CYG-------~--~~~~~~~~W~C~~C~~~~~~~~~~C~LC~~~ 713 (1112)
..|..|..... +..+.| ..|...-=++|++ . .++.....|.|+.|... -.|..|..+
T Consensus 8 ~~CHqCrqKt~---~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi-----CnCs~Crrk 79 (105)
T PF10497_consen 8 KTCHQCRQKTL---DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI-----CNCSFCRRK 79 (105)
T ss_pred CCchhhcCCCC---CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe-----eCCHhhhcc
Confidence 47888887543 234678 6783333345544 2 13334458999999863 468899877
Q ss_pred CCC
Q 001263 714 GGA 716 (1112)
Q Consensus 714 gGa 716 (1112)
.|-
T Consensus 80 ~g~ 82 (105)
T PF10497_consen 80 RGW 82 (105)
T ss_pred CCC
Confidence 664
No 154
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.10 E-value=46 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=20.6
Q ss_pred ccceeecCcCceeeecCCCCCCccccccchhh
Q 001263 761 LLCSICGVSYGACIQCSNTTCRVAYHPLCARA 792 (1112)
Q Consensus 761 ~~C~iC~~~~Ga~iqC~~~~C~~~FH~~CA~~ 792 (1112)
..|.+|+++-|.-.--.+ -|...||..|+.+
T Consensus 79 ~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVF-PCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCceEEEe-CCCeEEecccccC
Confidence 369999997553222122 4568899999864
Done!