Query 001264
Match_columns 1112
No_of_seqs 888 out of 5482
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.7E-64 5.8E-69 600.0 47.5 389 453-846 42-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.8E-58 2.3E-62 541.1 47.3 391 455-848 3-410 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.9E-55 3E-59 513.4 39.3 373 461-842 31-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 7.8E-54 2.7E-58 505.7 36.4 378 461-847 34-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.2E-52 4.1E-57 493.5 40.4 371 463-843 17-387 (400)
6 1xti_A Probable ATP-dependent 100.0 1.7E-51 5.8E-56 481.9 39.8 367 467-842 8-379 (391)
7 3fht_A ATP-dependent RNA helic 100.0 3.1E-51 1.1E-55 483.0 40.1 369 462-841 20-400 (412)
8 3pey_A ATP-dependent RNA helic 100.0 7.7E-51 2.6E-55 476.4 40.7 358 464-834 2-370 (395)
9 3sqw_A ATP-dependent RNA helic 100.0 4E-51 1.4E-55 503.1 38.7 359 474-835 28-412 (579)
10 1fuu_A Yeast initiation factor 100.0 1.3E-52 4.3E-57 491.8 24.0 374 462-845 16-390 (394)
11 1hv8_A Putative ATP-dependent 100.0 2.2E-50 7.6E-55 467.6 42.4 357 466-838 5-362 (367)
12 3fmp_B ATP-dependent RNA helic 100.0 1.6E-52 5.3E-57 504.6 20.6 365 465-840 90-466 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 1.3E-50 4.5E-55 497.9 38.0 358 474-834 79-462 (563)
14 2z0m_A 337AA long hypothetical 100.0 5.8E-48 2E-52 442.0 37.7 335 474-834 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 8.9E-48 3.1E-52 469.6 34.3 346 463-828 15-381 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.4E-48 5E-53 472.0 20.6 369 461-842 113-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 1.3E-46 4.5E-51 444.3 30.2 325 478-834 10-376 (414)
18 1tf5_A Preprotein translocase 100.0 1.3E-46 4.4E-51 457.6 27.3 373 424-823 22-547 (844)
19 1oyw_A RECQ helicase, ATP-depe 100.0 1.3E-45 4.4E-50 446.3 35.1 341 467-831 2-353 (523)
20 3l9o_A ATP-dependent RNA helic 100.0 6.8E-45 2.3E-49 470.8 23.6 330 467-821 162-597 (1108)
21 2fsf_A Preprotein translocase 100.0 9.2E-44 3.1E-48 431.0 27.1 369 435-825 24-587 (853)
22 2va8_A SSO2462, SKI2-type heli 100.0 1.7E-42 6E-47 437.0 36.7 337 466-823 7-410 (715)
23 4a2p_A RIG-I, retinoic acid in 100.0 5.5E-43 1.9E-47 429.3 29.8 331 486-823 4-510 (556)
24 2zj8_A DNA helicase, putative 100.0 1.1E-42 3.7E-47 438.8 29.7 332 468-822 2-388 (720)
25 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-42 5.3E-47 448.7 30.6 319 484-834 74-503 (1104)
26 3tbk_A RIG-I helicase domain; 100.0 1.9E-42 6.6E-47 424.1 29.9 330 489-826 4-512 (555)
27 2p6r_A Afuhel308 helicase; pro 100.0 6.9E-43 2.4E-47 439.3 23.8 331 468-822 2-389 (702)
28 2ykg_A Probable ATP-dependent 100.0 4.3E-43 1.5E-47 442.1 21.2 339 480-825 4-520 (696)
29 1gm5_A RECG; helicase, replica 100.0 3.9E-43 1.3E-47 437.0 19.2 362 476-897 356-740 (780)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 5.8E-43 2E-47 453.3 21.5 324 480-835 48-468 (1054)
31 1nkt_A Preprotein translocase 100.0 3.9E-42 1.3E-46 416.6 27.0 326 484-824 107-620 (922)
32 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-41 5.3E-46 432.4 32.7 332 485-823 244-751 (797)
33 2eyq_A TRCF, transcription-rep 100.0 4.1E-41 1.4E-45 438.2 36.8 370 472-895 586-969 (1151)
34 2xgj_A ATP-dependent RNA helic 100.0 2.6E-40 8.9E-45 424.5 35.0 312 484-821 82-499 (1010)
35 1wp9_A ATP-dependent RNA helic 100.0 5.6E-40 1.9E-44 394.4 32.7 321 489-822 9-476 (494)
36 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-40 5.7E-45 427.1 27.8 332 485-823 244-751 (936)
37 4gl2_A Interferon-induced heli 100.0 1.3E-40 4.6E-45 419.5 19.7 329 488-822 6-519 (699)
38 4a4z_A Antiviral helicase SKI2 100.0 7.7E-39 2.6E-43 411.0 32.1 308 485-819 36-490 (997)
39 3fe2_A Probable ATP-dependent 100.0 2.8E-38 9.5E-43 344.8 28.6 239 440-681 2-240 (242)
40 2whx_A Serine protease/ntpase/ 100.0 9.3E-41 3.2E-45 408.9 8.5 323 472-842 155-502 (618)
41 2xau_A PRE-mRNA-splicing facto 100.0 2.9E-39 1E-43 405.2 17.9 338 463-822 68-444 (773)
42 2jlq_A Serine protease subunit 100.0 1.9E-39 6.5E-44 385.9 13.7 287 486-820 1-310 (451)
43 4f92_B U5 small nuclear ribonu 100.0 1.9E-37 6.6E-42 414.2 32.7 341 474-826 911-1313(1724)
44 2oca_A DAR protein, ATP-depend 100.0 1.3E-38 4.4E-43 386.4 17.0 311 488-819 112-453 (510)
45 4f92_B U5 small nuclear ribonu 100.0 5.8E-37 2E-41 409.7 29.3 338 486-829 76-481 (1724)
46 1yks_A Genome polyprotein [con 100.0 5E-39 1.7E-43 380.6 6.1 291 500-842 4-323 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 1.3E-37 4.4E-42 376.9 14.8 289 489-835 217-532 (666)
48 2wv9_A Flavivirin protease NS2 100.0 1.1E-37 3.8E-42 383.7 11.8 306 482-834 203-549 (673)
49 2fwr_A DNA repair protein RAD2 100.0 8.2E-37 2.8E-41 366.8 18.9 293 488-821 92-454 (472)
50 2z83_A Helicase/nucleoside tri 100.0 3.3E-37 1.1E-41 367.2 10.5 281 498-829 15-323 (459)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 9.3E-35 3.2E-39 319.1 22.8 236 453-691 7-252 (253)
52 2v6i_A RNA helicase; membrane, 100.0 8.2E-35 2.8E-39 343.8 22.3 269 503-818 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 2.7E-34 9.2E-39 310.3 22.9 216 459-678 11-228 (228)
54 3rc3_A ATP-dependent RNA helic 100.0 3.3E-34 1.1E-38 351.6 21.0 280 494-820 145-444 (677)
55 3ber_A Probable ATP-dependent 100.0 2.5E-33 8.6E-38 306.6 25.6 210 463-679 39-248 (249)
56 3fmo_B ATP-dependent RNA helic 100.0 9.2E-34 3.1E-38 318.4 22.5 215 455-679 77-298 (300)
57 3dkp_A Probable ATP-dependent 100.0 1.1E-33 3.7E-38 309.1 21.3 232 445-681 3-243 (245)
58 3h1t_A Type I site-specific re 100.0 7.7E-34 2.6E-38 350.3 22.4 308 488-810 177-545 (590)
59 3bor_A Human initiation factor 100.0 1.7E-33 5.7E-38 305.9 22.1 214 458-679 21-235 (237)
60 2pl3_A Probable ATP-dependent 100.0 9.1E-33 3.1E-37 299.9 26.7 229 443-680 6-234 (236)
61 2oxc_A Probable ATP-dependent 100.0 6.8E-33 2.3E-37 299.7 23.3 211 459-678 16-228 (230)
62 3dmq_A RNA polymerase-associat 100.0 3.8E-33 1.3E-37 359.1 24.0 357 488-859 152-654 (968)
63 1q0u_A Bstdead; DEAD protein, 100.0 4.7E-33 1.6E-37 298.6 20.5 208 465-680 2-213 (219)
64 3jux_A Protein translocase sub 100.0 7.1E-32 2.4E-36 319.9 32.1 321 485-823 72-589 (822)
65 1qde_A EIF4A, translation init 100.0 1.2E-32 4.2E-37 296.3 23.2 213 460-681 7-219 (224)
66 1vec_A ATP-dependent RNA helic 100.0 2.7E-32 9.2E-37 289.6 25.1 202 467-676 3-205 (206)
67 2gxq_A Heat resistant RNA depe 100.0 1.1E-31 3.6E-36 285.2 25.3 204 468-678 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 5.1E-32 1.8E-36 298.6 23.5 205 467-674 52-258 (262)
69 1z63_A Helicase of the SNF2/RA 100.0 1.5E-31 5.2E-36 323.4 29.7 311 488-821 36-453 (500)
70 1t6n_A Probable ATP-dependent 100.0 1.3E-31 4.3E-36 287.6 21.8 207 463-677 10-219 (220)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.1E-30 1.4E-34 327.9 29.1 336 476-835 251-718 (1038)
72 3mwy_W Chromo domain-containin 100.0 1.4E-29 4.9E-34 321.3 32.0 318 488-821 235-684 (800)
73 1z3i_X Similar to RAD54-like; 100.0 4.2E-29 1.5E-33 309.3 34.2 322 489-821 55-528 (644)
74 2ipc_A Preprotein translocase 100.0 4.1E-27 1.4E-31 284.0 36.4 322 484-823 75-700 (997)
75 1c4o_A DNA nucleotide excision 100.0 3.7E-27 1.3E-31 291.6 31.7 176 647-831 379-560 (664)
76 2p6n_A ATP-dependent RNA helic 99.9 1.9E-27 6.4E-32 248.6 17.2 181 666-848 8-189 (191)
77 2d7d_A Uvrabc system protein B 99.9 8.1E-27 2.8E-31 288.3 25.3 205 617-830 331-565 (661)
78 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.4E-26 8.4E-31 239.0 19.2 168 682-849 14-181 (185)
79 2hjv_A ATP-dependent RNA helic 99.9 8.9E-25 3E-29 222.6 18.8 152 684-836 6-157 (163)
80 1t5i_A C_terminal domain of A 99.9 8.7E-25 3E-29 224.6 15.9 158 686-844 4-162 (172)
81 2rb4_A ATP-dependent RNA helic 99.9 2.6E-24 8.9E-29 221.9 17.5 155 684-839 4-165 (175)
82 1fuk_A Eukaryotic initiation f 99.9 7E-25 2.4E-29 223.9 13.0 157 687-844 3-160 (165)
83 3eaq_A Heat resistant RNA depe 99.9 2E-23 7E-28 222.0 20.2 148 689-837 7-154 (212)
84 3i32_A Heat resistant RNA depe 99.9 5.7E-23 2E-27 228.9 19.7 149 688-837 3-151 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 6.1E-24 2.1E-28 218.0 0.0 148 687-835 3-151 (170)
86 3b6e_A Interferon-induced heli 99.9 2.2E-22 7.5E-27 214.5 11.2 170 485-657 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 3.5E-21 1.2E-25 233.5 21.7 303 485-819 4-519 (540)
88 3llm_A ATP-dependent RNA helic 99.9 1.6E-21 5.5E-26 211.1 13.5 181 478-674 50-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 1.1E-19 3.9E-24 221.0 30.6 309 489-820 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.8 7.2E-21 2.5E-25 211.9 8.9 155 488-662 112-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.4E-17 8.3E-22 202.0 27.6 317 489-819 3-582 (620)
92 2fz4_A DNA repair protein RAD2 99.7 2E-17 6.7E-22 178.9 14.9 139 488-661 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 2.7E-17 9.4E-22 180.9 13.2 127 695-821 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.1E-08 3.9E-13 125.2 9.7 146 491-657 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.1 9.8E-05 3.3E-09 91.2 21.7 66 489-562 189-255 (646)
96 2xzl_A ATP-dependent helicase 98.1 0.00021 7.2E-09 89.8 23.3 70 487-563 358-427 (802)
97 3upu_A ATP-dependent DNA helic 98.0 0.00013 4.3E-09 86.4 19.6 70 483-559 19-93 (459)
98 3lfu_A DNA helicase II; SF1 he 98.0 0.00027 9.2E-09 87.4 22.1 72 488-565 8-79 (647)
99 2wjy_A Regulator of nonsense t 97.9 0.00024 8.1E-09 89.1 21.0 69 487-562 354-422 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.9 2.9E-05 1E-09 94.0 10.4 128 488-657 188-315 (574)
101 2gk6_A Regulator of nonsense t 97.8 0.00011 3.8E-09 90.2 14.9 69 487-562 178-246 (624)
102 1k1g_A SF1-BO isoform; splicin 97.7 5.2E-05 1.8E-09 72.4 6.9 83 1011-1093 5-100 (131)
103 2yqr_A KIAA0907 protein; struc 97.6 0.00011 3.8E-09 68.6 7.8 82 1013-1095 12-102 (119)
104 3hgt_A HDA1 complex subunit 3; 97.6 0.00022 7.5E-09 78.5 11.2 123 696-823 106-239 (328)
105 2o0j_A Terminase, DNA packagin 97.2 0.0025 8.7E-08 72.6 13.4 73 489-567 163-235 (385)
106 1uaa_A REP helicase, protein ( 97.0 0.0038 1.3E-07 77.4 14.4 71 489-565 2-72 (673)
107 2bl5_A MGC83862 protein, quaki 96.5 0.0017 5.7E-08 62.2 4.1 75 1017-1091 8-100 (140)
108 3cpe_A Terminase, DNA packagin 96.4 0.018 6.1E-07 70.1 13.8 74 489-568 163-236 (592)
109 2orw_A Thymidine kinase; TMTK, 96.4 0.0096 3.3E-07 60.7 9.5 39 503-549 2-40 (184)
110 3ec2_A DNA replication protein 96.3 0.01 3.5E-07 60.0 9.3 32 491-522 16-56 (180)
111 1xx6_A Thymidine kinase; NESG, 96.3 0.0082 2.8E-07 61.5 8.4 39 503-549 7-45 (191)
112 3kl4_A SRP54, signal recogniti 96.0 0.028 9.5E-07 65.0 11.8 130 506-669 99-234 (433)
113 2b8t_A Thymidine kinase; deoxy 95.9 0.0096 3.3E-07 62.6 6.4 91 503-629 11-101 (223)
114 2j9r_A Thymidine kinase; TK1, 95.8 0.012 4E-07 61.1 6.9 39 504-550 28-66 (214)
115 2orv_A Thymidine kinase; TP4A 95.4 0.031 1.1E-06 58.5 8.2 40 503-550 18-57 (234)
116 3dm5_A SRP54, signal recogniti 95.3 0.13 4.4E-06 59.5 13.5 131 506-669 102-235 (443)
117 3vkw_A Replicase large subunit 95.2 0.016 5.5E-07 66.8 5.8 107 506-657 163-269 (446)
118 3te6_A Regulatory protein SIR3 95.1 0.12 4E-06 57.3 12.2 28 503-531 44-71 (318)
119 2kjq_A DNAA-related protein; s 95.1 0.014 4.7E-07 57.3 4.2 19 503-521 35-53 (149)
120 1pjr_A PCRA; DNA repair, DNA r 95.1 0.034 1.2E-06 69.4 8.7 71 488-564 10-80 (724)
121 2w58_A DNAI, primosome compone 95.0 0.17 5.7E-06 51.9 12.3 24 505-529 55-78 (202)
122 1w4r_A Thymidine kinase; type 94.9 0.058 2E-06 55.0 8.3 39 503-549 19-57 (195)
123 3e2i_A Thymidine kinase; Zn-bi 94.9 0.028 9.6E-07 58.1 5.8 40 503-550 27-66 (219)
124 1l8q_A Chromosomal replication 94.8 0.091 3.1E-06 58.5 10.5 18 504-521 37-54 (324)
125 2zpa_A Uncharacterized protein 94.8 0.046 1.6E-06 66.2 8.4 113 489-659 175-289 (671)
126 1g5t_A COB(I)alamin adenosyltr 94.7 0.16 5.6E-06 51.7 11.0 135 505-666 29-171 (196)
127 2p65_A Hypothetical protein PF 94.7 0.12 4E-06 51.8 10.2 19 504-522 43-61 (187)
128 1jbk_A CLPB protein; beta barr 94.7 0.18 6.2E-06 50.5 11.6 25 504-529 43-67 (195)
129 1gm5_A RECG; helicase, replica 94.6 0.11 3.7E-06 64.9 11.2 87 707-793 410-501 (780)
130 1d2n_A N-ethylmaleimide-sensit 94.6 0.24 8.2E-06 53.5 12.8 18 505-522 65-82 (272)
131 3u4q_A ATP-dependent helicase/ 94.5 0.063 2.2E-06 71.0 9.5 128 488-627 9-137 (1232)
132 2qgz_A Helicase loader, putati 94.3 0.14 4.9E-06 56.5 10.4 20 504-523 152-171 (308)
133 2opv_A KHSRP protein; KH domai 94.1 0.054 1.9E-06 47.4 5.0 71 1013-1092 14-85 (85)
134 2z4s_A Chromosomal replication 93.8 0.19 6.5E-06 58.5 10.6 18 504-521 130-147 (440)
135 3h4m_A Proteasome-activating n 93.8 0.062 2.1E-06 58.5 6.1 55 464-521 11-68 (285)
136 1ec6_A RNA-binding protein NOV 93.7 0.23 7.8E-06 43.6 8.3 60 1032-1097 21-80 (87)
137 3oiy_A Reverse gyrase helicase 93.6 0.22 7.4E-06 57.4 10.5 80 712-791 62-148 (414)
138 2p2r_A Poly(RC)-binding protei 93.5 0.09 3.1E-06 44.9 5.3 71 1012-1093 4-75 (76)
139 1dtj_A RNA-binding neurooncolo 93.4 0.11 3.9E-06 44.2 5.8 62 1026-1093 14-76 (76)
140 3n70_A Transport activator; si 93.4 0.16 5.4E-06 49.2 7.6 22 501-522 21-42 (145)
141 1zzk_A Heterogeneous nuclear r 93.3 0.18 6.1E-06 43.7 6.9 72 1011-1093 5-77 (82)
142 2cte_A Vigilin; K homology typ 93.2 0.28 9.7E-06 43.7 8.3 73 1011-1096 15-88 (94)
143 1a5t_A Delta prime, HOLB; zinc 93.1 0.17 5.7E-06 56.7 8.3 39 491-530 4-49 (334)
144 3cf0_A Transitional endoplasmi 93.0 0.16 5.3E-06 56.0 7.6 54 465-521 10-66 (301)
145 2qby_B CDC6 homolog 3, cell di 92.9 0.33 1.1E-05 55.1 10.5 17 505-521 46-62 (384)
146 4b4t_M 26S protease regulatory 92.8 0.31 1.1E-05 56.2 10.0 56 463-521 174-232 (434)
147 2chg_A Replication factor C sm 92.8 0.74 2.5E-05 47.1 12.2 40 616-656 101-140 (226)
148 3u61_B DNA polymerase accessor 92.3 0.16 5.3E-06 56.5 6.6 41 616-656 104-144 (324)
149 3pfi_A Holliday junction ATP-d 92.2 0.28 9.5E-06 54.8 8.6 18 505-522 56-73 (338)
150 2v1u_A Cell division control p 92.2 0.39 1.3E-05 54.3 10.0 19 503-521 43-61 (387)
151 3eie_A Vacuolar protein sortin 92.2 0.62 2.1E-05 51.6 11.3 52 465-522 13-69 (322)
152 2qby_A CDC6 homolog 1, cell di 92.0 0.77 2.6E-05 51.8 12.2 18 504-521 45-62 (386)
153 3bos_A Putative DNA replicatio 92.0 0.15 5.1E-06 53.5 5.7 19 503-521 51-69 (242)
154 1fnn_A CDC6P, cell division co 92.0 0.27 9.1E-06 55.9 8.2 23 506-529 46-68 (389)
155 2hh2_A KH-type splicing regula 92.0 0.17 5.8E-06 46.3 5.2 73 1014-1094 8-81 (107)
156 1j5k_A Heterogeneous nuclear r 92.0 0.31 1.1E-05 43.0 6.7 71 1012-1093 13-84 (89)
157 1njg_A DNA polymerase III subu 91.9 1.6 5.6E-05 45.1 13.8 16 506-521 47-62 (250)
158 3vfd_A Spastin; ATPase, microt 91.9 0.47 1.6E-05 54.2 10.1 19 504-522 148-166 (389)
159 1x4n_A FAR upstream element bi 91.8 0.31 1.1E-05 43.2 6.6 71 1012-1093 14-85 (92)
160 3syl_A Protein CBBX; photosynt 91.7 0.11 3.7E-06 57.3 4.3 18 505-522 68-85 (309)
161 1sxj_E Activator 1 40 kDa subu 91.2 0.29 1E-05 54.9 7.4 42 616-658 133-174 (354)
162 1ls1_A Signal recognition part 91.2 0.95 3.3E-05 49.5 11.3 52 616-667 179-231 (295)
163 4b4t_J 26S protease regulatory 91.1 0.2 6.8E-06 57.0 5.8 54 465-521 143-199 (405)
164 2hh3_A KH-type splicing regula 91.0 0.43 1.5E-05 43.5 6.8 70 1014-1094 12-82 (106)
165 3b9p_A CG5977-PA, isoform A; A 90.8 1.3 4.3E-05 48.3 11.9 47 465-521 16-71 (297)
166 1x4m_A FAR upstream element bi 90.4 0.24 8.1E-06 44.2 4.4 75 1009-1092 11-86 (94)
167 4ddu_A Reverse gyrase; topoiso 90.4 0.47 1.6E-05 61.6 9.0 77 713-790 120-204 (1104)
168 1xwi_A SKD1 protein; VPS4B, AA 90.3 1.8 6.3E-05 47.8 12.7 51 465-521 7-62 (322)
169 2axy_A Poly(RC)-binding protei 90.2 0.49 1.7E-05 39.9 6.0 67 1013-1092 5-72 (73)
170 1ofh_A ATP-dependent HSL prote 90.1 1.1 3.9E-05 48.8 10.7 19 503-521 49-67 (310)
171 1we8_A Tudor and KH domain con 90.1 0.89 3.1E-05 41.2 8.1 73 1013-1094 15-88 (104)
172 2ctl_A Vigilin; K homology typ 89.9 1.2 3.9E-05 39.9 8.5 74 1012-1095 16-90 (97)
173 2ctj_A Vigilin; K homology typ 89.9 0.53 1.8E-05 41.9 6.2 70 1011-1093 15-86 (95)
174 3pvs_A Replication-associated 89.7 0.6 2.1E-05 54.3 8.4 18 505-522 51-68 (447)
175 3e70_C DPA, signal recognition 89.7 1.8 6.3E-05 47.9 11.9 53 618-670 212-265 (328)
176 1vma_A Cell division protein F 89.7 2.4 8.3E-05 46.4 12.8 19 505-523 105-123 (306)
177 2eyq_A TRCF, transcription-rep 89.5 0.96 3.3E-05 59.1 10.8 91 698-788 635-731 (1151)
178 1wvn_A Poly(RC)-binding protei 89.5 0.37 1.3E-05 41.7 4.8 71 1012-1093 5-76 (82)
179 3uk6_A RUVB-like 2; hexameric 89.4 0.97 3.3E-05 50.9 9.7 19 504-522 70-88 (368)
180 1vig_A Vigilin; RNA-binding pr 89.3 0.72 2.5E-05 38.6 6.3 66 1012-1090 4-70 (71)
181 1t6n_A Probable ATP-dependent 89.3 1.5 5.2E-05 45.2 10.4 71 715-788 83-164 (220)
182 2w0m_A SSO2452; RECA, SSPF, un 89.1 1.1 3.7E-05 46.5 9.2 23 503-525 22-44 (235)
183 2qp9_X Vacuolar protein sortin 88.9 1.1 3.6E-05 50.5 9.5 19 504-522 84-102 (355)
184 4b4t_K 26S protease regulatory 88.8 1.1 3.8E-05 51.5 9.5 55 464-521 166-223 (428)
185 4b4t_L 26S protease subunit RP 88.5 0.31 1.1E-05 56.2 4.7 56 464-522 175-233 (437)
186 2qz4_A Paraplegin; AAA+, SPG7, 88.4 1.6 5.6E-05 46.2 10.2 19 504-522 39-57 (262)
187 2v1x_A ATP-dependent DNA helic 88.3 0.88 3E-05 55.0 8.7 76 713-788 83-171 (591)
188 1jr3_A DNA polymerase III subu 88.3 2.3 7.8E-05 47.7 11.8 23 506-529 40-62 (373)
189 2dr3_A UPF0273 protein PH0284; 88.2 1.6 5.5E-05 45.7 9.9 50 503-561 22-71 (247)
190 3lda_A DNA repair protein RAD5 88.2 2.7 9.1E-05 48.0 12.1 19 504-522 178-196 (400)
191 2r6a_A DNAB helicase, replicat 88.1 0.94 3.2E-05 52.8 8.6 38 503-547 202-239 (454)
192 1sxj_D Activator 1 41 kDa subu 87.6 0.9 3.1E-05 50.7 7.8 39 616-655 132-170 (353)
193 1oyw_A RECQ helicase, ATP-depe 87.4 2.4 8.3E-05 50.3 11.7 76 713-788 64-145 (523)
194 2ehv_A Hypothetical protein PH 87.3 0.46 1.6E-05 50.1 4.9 45 616-660 134-183 (251)
195 2q6t_A DNAB replication FORK h 87.1 0.66 2.2E-05 54.0 6.4 37 504-547 200-236 (444)
196 2ctm_A Vigilin; K homology typ 87.0 1.3 4.4E-05 39.4 6.8 73 1012-1096 16-89 (95)
197 2cvh_A DNA repair and recombin 86.9 1.7 5.7E-05 44.7 8.9 24 503-526 19-42 (220)
198 2yhs_A FTSY, cell division pro 86.7 1 3.5E-05 52.6 7.5 19 504-522 293-311 (503)
199 2ffh_A Protein (FFH); SRP54, s 86.7 3.7 0.00013 47.1 12.2 22 504-525 98-119 (425)
200 3d8b_A Fidgetin-like protein 1 86.6 0.6 2.1E-05 52.6 5.5 19 504-522 117-135 (357)
201 1iqp_A RFCS; clamp loader, ext 86.6 1.6 5.4E-05 47.9 9.0 39 616-655 109-147 (327)
202 2ctk_A Vigilin; K homology typ 86.5 1.1 3.9E-05 40.5 6.3 69 1013-1094 17-86 (104)
203 2jzx_A Poly(RC)-binding protei 86.4 1.1 3.7E-05 44.0 6.7 71 1012-1092 88-159 (160)
204 4a1f_A DNAB helicase, replicat 86.3 1 3.5E-05 50.1 7.1 37 503-547 45-81 (338)
205 3hu3_A Transitional endoplasmi 86.3 1.5 5.2E-05 51.5 8.9 42 618-659 298-349 (489)
206 2zan_A Vacuolar protein sortin 86.3 1.1 3.8E-05 52.0 7.8 18 504-521 167-184 (444)
207 4b4t_I 26S protease regulatory 85.9 0.87 3E-05 52.1 6.3 55 464-521 176-233 (437)
208 4b4t_H 26S protease regulatory 85.8 0.64 2.2E-05 53.6 5.2 55 464-521 203-260 (467)
209 1nlf_A Regulatory protein REPA 85.6 2.7 9.3E-05 45.2 10.0 26 501-526 27-52 (279)
210 3ber_A Probable ATP-dependent 85.6 3.3 0.00011 43.7 10.5 71 714-788 111-192 (249)
211 2p6n_A ATP-dependent RNA helic 85.5 4.8 0.00016 40.7 11.2 71 540-623 54-128 (191)
212 1qvr_A CLPB protein; coiled co 85.1 1.4 4.8E-05 55.8 8.4 19 504-522 191-209 (854)
213 2gno_A DNA polymerase III, gam 85.0 3.4 0.00012 45.3 10.5 42 615-658 80-121 (305)
214 1sxj_B Activator 1 37 kDa subu 85.0 1.5 5E-05 48.1 7.7 38 617-655 107-144 (323)
215 2j37_W Signal recognition part 84.8 4.6 0.00016 47.4 12.0 42 506-555 103-146 (504)
216 3t15_A Ribulose bisphosphate c 84.7 0.59 2E-05 51.1 4.1 17 505-521 37-53 (293)
217 3k1j_A LON protease, ATP-depen 84.5 5.1 0.00018 48.4 12.8 24 498-521 54-77 (604)
218 2v3c_C SRP54, signal recogniti 84.5 0.59 2E-05 54.0 4.2 22 505-526 100-121 (432)
219 1sxj_A Activator 1 95 kDa subu 84.3 2.4 8.1E-05 50.3 9.5 41 616-658 147-189 (516)
220 3fe2_A Probable ATP-dependent 84.3 6.1 0.00021 41.3 11.8 71 714-788 102-182 (242)
221 2zts_A Putative uncharacterize 84.1 1.3 4.6E-05 46.4 6.5 51 503-561 29-79 (251)
222 2pl3_A Probable ATP-dependent 84.0 4.4 0.00015 42.1 10.5 70 714-788 97-177 (236)
223 1hqc_A RUVB; extended AAA-ATPa 84.0 2.4 8.2E-05 46.5 8.9 18 504-521 38-55 (324)
224 1n0w_A DNA repair protein RAD5 83.9 2.7 9.3E-05 43.8 8.8 24 503-526 23-46 (243)
225 1j8m_F SRP54, signal recogniti 83.7 3.8 0.00013 44.7 10.1 22 504-525 98-119 (297)
226 2oxc_A Probable ATP-dependent 83.7 2.5 8.7E-05 43.9 8.4 70 714-788 92-172 (230)
227 2xxa_A Signal recognition part 83.6 3.8 0.00013 47.2 10.5 57 506-572 102-160 (433)
228 3cmu_A Protein RECA, recombina 83.3 1.5 5.2E-05 59.4 7.8 45 498-550 1415-1465(2050)
229 3krm_A Insulin-like growth fac 83.1 2 6.9E-05 42.2 6.9 75 1011-1094 83-158 (163)
230 3hjh_A Transcription-repair-co 82.8 2.8 9.6E-05 49.0 9.0 52 503-565 13-64 (483)
231 2hjv_A ATP-dependent RNA helic 82.6 3 0.0001 40.8 7.9 72 540-624 35-110 (163)
232 1w5s_A Origin recognition comp 82.3 1.6 5.5E-05 49.7 6.7 17 505-521 51-69 (412)
233 1xti_A Probable ATP-dependent 82.2 4.1 0.00014 45.8 10.0 72 714-788 76-158 (391)
234 3bor_A Human initiation factor 82.1 2.7 9.3E-05 43.9 7.9 72 714-788 98-179 (237)
235 2dgr_A Ring finger and KH doma 82.0 1.8 6.2E-05 37.4 5.2 67 1010-1090 7-74 (83)
236 2fna_A Conserved hypothetical 81.7 25 0.00085 38.5 16.2 38 618-657 138-178 (357)
237 1wrb_A DJVLGB; RNA helicase, D 81.6 12 0.00041 39.2 13.0 70 715-788 101-180 (253)
238 2ce7_A Cell division protein F 81.6 1.3 4.5E-05 51.7 5.6 17 505-521 50-66 (476)
239 1vec_A ATP-dependent RNA helic 81.5 4.7 0.00016 40.8 9.3 71 714-788 71-152 (206)
240 1fuk_A Eukaryotic initiation f 81.4 5.6 0.00019 38.8 9.5 72 540-624 30-105 (165)
241 2px0_A Flagellar biosynthesis 81.2 1.8 6.3E-05 47.2 6.3 23 503-525 104-126 (296)
242 2rb4_A ATP-dependent RNA helic 80.6 4 0.00014 40.4 8.1 71 540-623 34-108 (175)
243 3iuy_A Probable ATP-dependent 79.8 4.2 0.00014 42.1 8.3 71 714-788 94-173 (228)
244 2gxq_A Heat resistant RNA depe 79.5 9.8 0.00034 38.3 11.0 71 714-788 72-150 (207)
245 1xp8_A RECA protein, recombina 79.4 3.5 0.00012 46.4 8.0 37 504-548 74-110 (366)
246 3eaq_A Heat resistant RNA depe 78.9 11 0.00036 38.7 11.0 71 540-623 31-105 (212)
247 3co5_A Putative two-component 78.7 1.3 4.5E-05 42.4 3.7 22 499-520 22-43 (143)
248 2jgn_A DBX, DDX3, ATP-dependen 78.6 4.9 0.00017 40.3 8.1 72 539-623 45-120 (185)
249 3i5x_A ATP-dependent RNA helic 78.6 9.9 0.00034 45.3 12.2 100 511-625 315-418 (563)
250 1qde_A EIF4A, translation init 78.5 2.8 9.7E-05 43.1 6.5 70 714-788 82-161 (224)
251 2zr9_A Protein RECA, recombina 78.4 3.4 0.00012 46.2 7.5 38 503-548 60-97 (349)
252 2z43_A DNA repair and recombin 78.2 4.9 0.00017 44.4 8.7 45 503-549 106-150 (324)
253 1r6b_X CLPA protein; AAA+, N-t 77.7 4.3 0.00015 50.6 8.9 20 503-522 206-225 (758)
254 1t5i_A C_terminal domain of A 77.4 31 0.0011 33.7 13.6 73 540-625 31-107 (172)
255 3ly5_A ATP-dependent RNA helic 76.8 10 0.00036 40.1 10.6 71 714-788 126-207 (262)
256 3hr8_A Protein RECA; alpha and 76.5 2 6.8E-05 48.2 4.8 39 504-550 61-99 (356)
257 3sqw_A ATP-dependent RNA helic 76.3 12 0.00042 44.7 12.2 76 540-625 288-367 (579)
258 3m6a_A ATP-dependent protease 76.3 2.8 9.6E-05 50.0 6.3 19 503-521 107-125 (543)
259 3cf2_A TER ATPase, transitiona 76.1 3.6 0.00012 51.1 7.4 56 463-521 470-528 (806)
260 1zu4_A FTSY; GTPase, signal re 76.0 6.7 0.00023 43.2 8.9 20 504-523 105-124 (320)
261 4a74_A DNA repair and recombin 75.9 4.2 0.00014 41.9 6.9 20 503-522 24-43 (231)
262 2eyu_A Twitching motility prot 75.6 1.3 4.6E-05 47.4 3.0 20 501-520 22-41 (261)
263 4ag6_A VIRB4 ATPase, type IV s 74.6 3.1 0.00011 47.3 5.9 42 503-552 34-75 (392)
264 2jvz_A KH type-splicing, FAR u 74.5 3.7 0.00013 40.3 5.7 71 1014-1093 3-74 (164)
265 3pxi_A Negative regulator of g 74.5 2.6 9E-05 52.5 5.7 17 506-522 523-539 (758)
266 1wp9_A ATP-dependent RNA helic 74.5 10 0.00035 43.5 10.6 86 698-788 34-131 (494)
267 3bgw_A DNAB-like replicative h 74.0 3 0.0001 48.3 5.6 36 504-547 197-232 (444)
268 1v5w_A DMC1, meiotic recombina 73.7 4.6 0.00016 45.0 6.9 44 504-549 122-165 (343)
269 2db3_A ATP-dependent RNA helic 73.5 9.1 0.00031 44.0 9.6 71 714-788 129-209 (434)
270 3bh0_A DNAB-like replicative h 73.2 3.6 0.00012 45.3 5.8 50 503-561 67-116 (315)
271 1j4w_A FUSE binding protein; s 72.9 4.7 0.00016 40.1 6.0 70 1013-1090 104-174 (174)
272 3cmu_A Protein RECA, recombina 72.9 3.3 0.00011 56.3 6.2 46 503-557 1080-1125(2050)
273 1e9r_A Conjugal transfer prote 72.8 2.9 0.0001 48.2 5.2 44 503-554 52-95 (437)
274 1pzn_A RAD51, DNA repair and r 72.8 4.2 0.00014 45.5 6.3 21 503-523 130-150 (349)
275 1gku_B Reverse gyrase, TOP-RG; 72.7 8 0.00027 50.0 9.7 73 714-788 99-181 (1054)
276 3u4q_B ATP-dependent helicase/ 72.3 4 0.00014 53.6 6.8 88 507-627 4-91 (1166)
277 2i4i_A ATP-dependent RNA helic 71.9 12 0.0004 42.4 10.0 72 539-623 275-350 (417)
278 1fuu_A Yeast initiation factor 71.8 9.4 0.00032 42.7 9.1 71 713-788 88-168 (394)
279 3h75_A Periplasmic sugar-bindi 71.8 1.2E+02 0.004 33.0 18.7 36 703-740 195-230 (350)
280 1ypw_A Transitional endoplasmi 70.8 9.2 0.00031 47.9 9.3 18 503-520 237-254 (806)
281 3jvv_A Twitching mobility prot 70.7 3.2 0.00011 46.5 4.7 18 503-520 122-139 (356)
282 3i32_A Heat resistant RNA depe 70.6 14 0.00047 40.2 9.6 71 540-623 28-102 (300)
283 4a2p_A RIG-I, retinoic acid in 70.4 11 0.00036 44.7 9.6 71 714-788 55-136 (556)
284 2jvz_A KH type-splicing, FAR u 70.3 7.4 0.00025 38.0 6.8 60 1025-1093 101-161 (164)
285 1q0u_A Bstdead; DEAD protein, 69.6 4.2 0.00014 41.8 5.0 71 714-788 72-156 (219)
286 2ctf_A Vigilin; K homology typ 69.5 13 0.00046 33.3 7.6 69 1013-1097 27-97 (102)
287 1j4w_A FUSE binding protein; s 69.5 7.6 0.00026 38.5 6.7 54 1031-1093 20-73 (174)
288 2oap_1 GSPE-2, type II secreti 69.1 4 0.00014 48.2 5.2 38 481-520 238-276 (511)
289 1tua_A Hypothetical protein AP 69.0 9.6 0.00033 38.4 7.2 92 984-1091 59-159 (191)
290 3tbk_A RIG-I helicase domain; 68.8 7.1 0.00024 46.1 7.5 71 714-788 52-133 (555)
291 3cf2_A TER ATPase, transitiona 68.6 6.1 0.00021 49.1 6.9 16 505-520 239-254 (806)
292 2e3u_A PH-DIM2P, hypothetical 68.1 20 0.00069 36.9 9.6 67 1010-1092 115-191 (219)
293 3b85_A Phosphate starvation-in 68.0 4.2 0.00014 41.8 4.5 32 490-521 8-39 (208)
294 2i1q_A DNA repair and recombin 67.8 7 0.00024 42.9 6.7 23 504-526 98-120 (322)
295 4a2q_A RIG-I, retinoic acid in 67.7 12 0.00041 46.8 9.5 71 714-788 296-377 (797)
296 3dkp_A Probable ATP-dependent 67.5 4.2 0.00014 42.6 4.6 71 715-788 99-181 (245)
297 1s2m_A Putative ATP-dependent 67.3 14 0.00048 41.5 9.3 71 714-788 89-169 (400)
298 3fmo_B ATP-dependent RNA helic 66.0 5.9 0.0002 43.1 5.5 67 715-788 163-241 (300)
299 3g5j_A Putative ATP/GTP bindin 66.0 6.7 0.00023 36.5 5.3 48 703-750 77-126 (134)
300 3eiq_A Eukaryotic initiation f 65.8 17 0.00058 40.9 9.7 73 713-788 107-189 (414)
301 2d7d_A Uvrabc system protein B 65.4 24 0.00083 42.9 11.4 77 540-629 445-525 (661)
302 3gk5_A Uncharacterized rhodane 65.3 5.6 0.00019 35.9 4.3 47 704-750 45-91 (108)
303 1kgd_A CASK, peripheral plasma 64.2 3.4 0.00012 41.2 2.9 19 503-521 4-22 (180)
304 1c4o_A DNA nucleotide excision 64.0 28 0.00095 42.4 11.5 76 540-628 439-518 (664)
305 2anr_A Neuro-oncological ventr 63.9 7.6 0.00026 38.6 5.4 71 1013-1092 104-175 (178)
306 2anr_A Neuro-oncological ventr 63.7 9.1 0.00031 38.0 6.0 71 1012-1092 5-78 (178)
307 2fsf_A Preprotein translocase 63.5 14 0.00047 45.7 8.5 80 703-788 104-200 (853)
308 1hv8_A Putative ATP-dependent 63.3 39 0.0013 37.0 11.9 70 714-788 74-153 (367)
309 3cmw_A Protein RECA, recombina 63.2 5.7 0.00019 53.3 5.4 123 504-661 1431-1570(1706)
310 2jzx_A Poly(RC)-binding protei 62.9 12 0.0004 36.5 6.5 68 1014-1094 6-74 (160)
311 3dmn_A Putative DNA helicase; 62.6 57 0.002 31.9 11.7 83 695-792 41-124 (174)
312 2gza_A Type IV secretion syste 62.2 4.6 0.00016 45.4 3.7 20 501-520 172-191 (361)
313 3fht_A ATP-dependent RNA helic 62.1 12 0.00041 42.2 7.4 71 540-623 266-340 (412)
314 2j0s_A ATP-dependent RNA helic 61.9 39 0.0013 37.9 11.7 72 713-788 104-185 (410)
315 1p9r_A General secretion pathw 61.4 5.9 0.0002 45.4 4.5 25 504-529 167-191 (418)
316 3b6e_A Interferon-induced heli 60.4 9.6 0.00033 38.5 5.6 55 714-772 82-140 (216)
317 2og2_A Putative signal recogni 60.3 16 0.00054 40.8 7.7 19 504-522 157-175 (359)
318 1tf7_A KAIC; homohexamer, hexa 60.1 32 0.0011 40.5 10.9 39 503-549 280-318 (525)
319 1lvg_A Guanylate kinase, GMP k 60.1 4.9 0.00017 40.7 3.3 19 503-521 3-21 (198)
320 3a8t_A Adenylate isopentenyltr 60.0 4.4 0.00015 44.8 3.0 18 505-522 41-58 (339)
321 1tf5_A Preprotein translocase 59.8 20 0.00068 44.4 9.0 80 703-788 113-209 (844)
322 3hws_A ATP-dependent CLP prote 59.8 13 0.00044 41.5 7.0 20 503-522 50-69 (363)
323 3vaa_A Shikimate kinase, SK; s 59.5 4.8 0.00017 40.7 3.1 20 503-522 24-43 (199)
324 1qhx_A CPT, protein (chloramph 59.4 3.8 0.00013 40.4 2.2 19 504-522 3-21 (178)
325 2z0m_A 337AA long hypothetical 59.3 31 0.0011 37.3 10.0 70 714-788 56-135 (337)
326 2bjv_A PSP operon transcriptio 59.0 5.7 0.00019 42.2 3.7 19 502-520 27-45 (265)
327 3exa_A TRNA delta(2)-isopenten 58.9 4.2 0.00014 44.5 2.6 18 505-522 4-21 (322)
328 3iij_A Coilin-interacting nucl 58.2 3.8 0.00013 40.6 2.0 21 502-522 9-29 (180)
329 3tau_A Guanylate kinase, GMP k 58.0 5.3 0.00018 40.8 3.1 19 503-521 7-25 (208)
330 3krm_A Insulin-like growth fac 57.9 17 0.00057 35.5 6.6 60 1026-1093 14-74 (163)
331 3nbx_X ATPase RAVA; AAA+ ATPas 57.9 11 0.00037 44.3 6.0 26 495-520 32-57 (500)
332 2pt7_A CAG-ALFA; ATPase, prote 57.8 4.7 0.00016 44.7 2.8 19 501-519 168-186 (330)
333 2j41_A Guanylate kinase; GMP, 57.7 5 0.00017 40.5 2.9 21 501-521 3-23 (207)
334 2qmh_A HPR kinase/phosphorylas 57.2 4.6 0.00016 41.1 2.3 20 503-522 33-52 (205)
335 3tr0_A Guanylate kinase, GMP k 57.2 5.1 0.00018 40.4 2.8 19 503-521 6-24 (205)
336 2r44_A Uncharacterized protein 57.1 6.8 0.00023 43.1 4.0 25 497-521 39-63 (331)
337 2yjt_D ATP-dependent RNA helic 61.8 2.2 7.7E-05 42.1 0.0 71 540-623 30-104 (170)
338 3ney_A 55 kDa erythrocyte memb 57.0 5.4 0.00019 40.6 2.9 20 502-521 17-36 (197)
339 2xau_A PRE-mRNA-splicing facto 56.8 21 0.00072 44.4 8.7 75 540-623 303-393 (773)
340 1kht_A Adenylate kinase; phosp 56.7 4.6 0.00016 40.2 2.3 20 503-522 2-21 (192)
341 1u0j_A DNA replication protein 56.7 17 0.00059 38.6 6.8 43 477-522 74-122 (267)
342 1lv7_A FTSH; alpha/beta domain 56.3 15 0.00051 38.6 6.4 53 466-521 8-62 (257)
343 2ykg_A Probable ATP-dependent 56.2 14 0.0005 45.1 7.2 70 715-788 62-142 (696)
344 2ipc_A Preprotein translocase 56.1 29 0.001 43.2 9.4 63 704-772 110-176 (997)
345 3trf_A Shikimate kinase, SK; a 56.0 6 0.00021 39.2 3.1 20 504-523 5-24 (185)
346 3foz_A TRNA delta(2)-isopenten 55.7 5.7 0.0002 43.3 3.0 16 507-522 13-28 (316)
347 3lw7_A Adenylate kinase relate 55.2 5 0.00017 39.0 2.3 17 506-522 3-19 (179)
348 4f4c_A Multidrug resistance pr 54.7 28 0.00097 46.0 9.9 41 615-655 570-610 (1321)
349 3l9o_A ATP-dependent RNA helic 54.5 12 0.00043 48.4 6.3 66 712-788 225-296 (1108)
350 2ze6_A Isopentenyl transferase 54.3 6.3 0.00021 41.7 3.0 16 507-522 4-19 (253)
351 3pey_A ATP-dependent RNA helic 54.2 55 0.0019 36.2 11.2 75 540-627 243-321 (395)
352 3nwn_A Kinesin-like protein KI 54.1 7.5 0.00026 43.4 3.7 26 496-521 95-122 (359)
353 1z6g_A Guanylate kinase; struc 54.1 7.6 0.00026 40.0 3.5 19 502-520 21-39 (218)
354 1nkt_A Preprotein translocase 53.4 27 0.00091 43.5 8.5 79 704-788 142-237 (922)
355 4a2w_A RIG-I, retinoic acid in 53.3 21 0.00073 45.4 8.2 71 714-788 296-377 (936)
356 1ixz_A ATP-dependent metallopr 53.2 4 0.00014 43.1 1.2 54 464-520 10-65 (254)
357 3l49_A ABC sugar (ribose) tran 52.9 2.2E+02 0.0074 29.6 15.5 183 541-739 6-215 (291)
358 2cpq_A FragIle X mental retard 52.7 15 0.00053 32.1 4.6 63 1012-1089 14-78 (91)
359 3a00_A Guanylate kinase, GMP k 52.7 8.1 0.00028 38.5 3.4 16 505-520 2-17 (186)
360 4etp_A Kinesin-like protein KA 52.4 9.7 0.00033 43.3 4.3 26 497-522 132-159 (403)
361 3p32_A Probable GTPase RV1496/ 52.3 98 0.0033 34.2 12.6 18 506-523 81-98 (355)
362 2ewv_A Twitching motility prot 52.0 6.1 0.00021 44.6 2.5 19 502-520 134-152 (372)
363 1kag_A SKI, shikimate kinase I 51.8 8.6 0.0003 37.5 3.4 18 504-521 4-21 (173)
364 2r8r_A Sensor protein; KDPD, P 51.6 14 0.00049 38.2 5.0 24 506-529 8-31 (228)
365 4gp7_A Metallophosphoesterase; 51.4 5.5 0.00019 39.3 1.8 20 503-522 8-27 (171)
366 1zp6_A Hypothetical protein AT 51.4 6.5 0.00022 39.2 2.4 18 503-520 8-25 (191)
367 4akg_A Glutathione S-transfera 51.3 14 0.00049 51.9 6.4 49 474-523 890-942 (2695)
368 3nwj_A ATSK2; P loop, shikimat 51.3 9.5 0.00033 40.3 3.8 23 500-522 44-66 (250)
369 1bg2_A Kinesin; motor protein, 50.9 9.5 0.00033 42.0 3.8 26 496-521 68-95 (325)
370 1sxj_C Activator 1 40 kDa subu 50.8 54 0.0019 35.9 10.2 21 502-522 42-64 (340)
371 2x8a_A Nuclear valosin-contain 50.8 3 0.0001 44.9 -0.2 53 465-520 5-60 (274)
372 2qor_A Guanylate kinase; phosp 50.7 9.2 0.00031 38.7 3.5 21 501-521 9-29 (204)
373 2ius_A DNA translocase FTSK; n 50.5 15 0.00052 43.0 5.7 21 503-523 166-186 (512)
374 3crm_A TRNA delta(2)-isopenten 50.5 7.7 0.00026 42.7 3.0 17 506-522 7-23 (323)
375 1znw_A Guanylate kinase, GMP k 50.2 8.6 0.00029 39.1 3.1 21 500-520 16-36 (207)
376 1ojl_A Transcriptional regulat 50.0 9 0.00031 41.8 3.4 19 503-521 24-42 (304)
377 3cm0_A Adenylate kinase; ATP-b 49.9 6.4 0.00022 39.0 2.1 20 503-522 3-22 (186)
378 1v8k_A Kinesin-like protein KI 49.4 10 0.00035 43.0 3.8 27 496-522 145-173 (410)
379 2h58_A Kinesin-like protein KI 49.2 10 0.00036 41.8 3.8 26 496-521 71-98 (330)
380 2nr8_A Kinesin-like protein KI 49.2 10 0.00034 42.4 3.7 26 496-521 94-121 (358)
381 1gmx_A GLPE protein; transfera 49.1 13 0.00045 33.3 3.9 43 708-750 52-95 (108)
382 2vvg_A Kinesin-2; motor protei 48.9 11 0.00036 42.1 3.8 25 497-521 81-107 (350)
383 1iy2_A ATP-dependent metallopr 48.8 5.3 0.00018 42.8 1.3 52 465-520 35-89 (278)
384 3b6u_A Kinesin-like protein KI 48.8 10 0.00035 42.5 3.7 26 496-521 92-119 (372)
385 2y65_A Kinesin, kinesin heavy 48.7 12 0.0004 41.9 4.1 26 496-521 75-102 (365)
386 3dc4_A Kinesin-like protein NO 48.6 11 0.00037 41.8 3.8 26 496-521 85-112 (344)
387 3flh_A Uncharacterized protein 48.4 8.9 0.0003 35.5 2.7 47 704-750 61-109 (124)
388 2zfi_A Kinesin-like protein KI 48.3 11 0.00037 42.3 3.8 26 496-521 80-107 (366)
389 1t5c_A CENP-E protein, centrom 48.1 11 0.00037 42.0 3.7 26 496-521 68-95 (349)
390 1y63_A LMAJ004144AAA protein; 48.1 9.8 0.00033 37.8 3.1 20 503-522 9-28 (184)
391 3gbj_A KIF13B protein; kinesin 48.0 11 0.00037 42.1 3.6 26 496-521 83-110 (354)
392 3d3q_A TRNA delta(2)-isopenten 47.9 9 0.00031 42.4 3.0 17 506-522 9-25 (340)
393 1ly1_A Polynucleotide kinase; 47.9 7.7 0.00026 38.0 2.3 16 506-521 4-19 (181)
394 1ex7_A Guanylate kinase; subst 47.7 9 0.00031 38.5 2.7 16 505-520 2-17 (186)
395 1x88_A Kinesin-like protein KI 47.7 9.7 0.00033 42.6 3.3 26 496-521 79-106 (359)
396 3cwq_A Para family chromosome 47.7 1.2E+02 0.0039 30.6 11.4 19 508-526 5-23 (209)
397 1goj_A Kinesin, kinesin heavy 47.6 11 0.00037 42.1 3.6 25 497-521 72-98 (355)
398 1cr0_A DNA primase/helicase; R 47.2 17 0.00058 39.1 5.1 22 503-524 34-55 (296)
399 3lre_A Kinesin-like protein KI 47.2 11 0.00037 42.1 3.6 25 497-521 97-123 (355)
400 2wbe_C Bipolar kinesin KRP-130 47.2 11 0.00036 42.5 3.5 26 496-521 91-118 (373)
401 3kb2_A SPBC2 prophage-derived 47.1 9.9 0.00034 36.9 3.0 17 506-522 3-19 (173)
402 4eun_A Thermoresistant glucoki 47.0 10 0.00035 38.2 3.1 20 503-522 28-47 (200)
403 3u06_A Protein claret segregat 46.9 12 0.0004 42.7 3.8 25 497-521 130-156 (412)
404 1u94_A RECA protein, recombina 46.9 17 0.00058 40.6 5.1 38 503-548 62-99 (356)
405 4a14_A Kinesin, kinesin-like p 46.9 13 0.00045 41.3 4.1 25 497-521 75-101 (344)
406 3foj_A Uncharacterized protein 46.8 10 0.00036 33.4 2.8 37 713-749 55-91 (100)
407 3cob_A Kinesin heavy chain-lik 46.8 9.3 0.00032 42.8 2.9 25 497-521 71-97 (369)
408 2c9o_A RUVB-like 1; hexameric 46.6 15 0.0005 42.6 4.7 19 504-522 63-81 (456)
409 3t0q_A AGR253WP; kinesin, alph 46.5 9.8 0.00034 42.4 3.0 27 496-522 76-104 (349)
410 4f4c_A Multidrug resistance pr 46.3 18 0.00063 47.8 6.1 41 615-655 1233-1273(1321)
411 1knq_A Gluconate kinase; ALFA/ 46.3 9 0.00031 37.6 2.5 19 504-522 8-26 (175)
412 2oca_A DAR protein, ATP-depend 46.1 29 0.00097 40.6 7.3 71 714-791 157-234 (510)
413 2r62_A Cell division protease 45.7 12 0.0004 39.6 3.5 19 504-522 44-62 (268)
414 3bfn_A Kinesin-like protein KI 45.5 9.6 0.00033 43.0 2.8 24 498-521 91-116 (388)
415 2fz4_A DNA repair protein RAD2 45.5 41 0.0014 34.9 7.6 60 697-771 118-178 (237)
416 1f9v_A Kinesin-like protein KA 45.5 10 0.00035 42.2 2.9 26 497-522 76-103 (347)
417 2qnd_A FMR1 protein; KH domain 45.3 38 0.0013 32.3 6.7 71 1015-1092 69-142 (144)
418 1s96_A Guanylate kinase, GMP k 45.3 11 0.00038 38.8 3.1 20 501-520 13-32 (219)
419 1um8_A ATP-dependent CLP prote 45.2 33 0.0011 38.3 7.3 19 504-522 72-90 (376)
420 1xjc_A MOBB protein homolog; s 45.1 20 0.00069 35.3 4.8 23 507-530 7-29 (169)
421 1tev_A UMP-CMP kinase; ploop, 45.0 9.7 0.00033 37.8 2.5 19 504-522 3-21 (196)
422 1m7g_A Adenylylsulfate kinase; 45.0 11 0.00038 38.3 3.0 31 491-522 13-43 (211)
423 3ice_A Transcription terminati 44.8 86 0.0029 35.3 10.2 31 492-522 159-192 (422)
424 2wv9_A Flavivirin protease NS2 44.7 23 0.00077 43.2 6.1 68 540-622 410-478 (673)
425 2owm_A Nckin3-434, related to 44.4 13 0.00046 42.7 3.8 26 496-521 127-154 (443)
426 3kta_A Chromosome segregation 44.4 12 0.0004 36.9 3.0 16 506-521 28-43 (182)
427 3eph_A TRNA isopentenyltransfe 44.3 10 0.00036 42.9 2.8 16 507-522 5-20 (409)
428 1rj9_A FTSY, signal recognitio 44.1 18 0.00061 39.4 4.6 19 504-522 102-120 (304)
429 3eme_A Rhodanese-like domain p 43.9 10 0.00035 33.6 2.3 37 713-749 55-91 (103)
430 2jtq_A Phage shock protein E; 43.9 31 0.0011 29.2 5.3 36 713-749 40-76 (85)
431 2heh_A KIF2C protein; kinesin, 43.7 14 0.00048 41.6 3.7 27 496-522 125-153 (387)
432 1tue_A Replication protein E1; 43.5 21 0.00071 36.5 4.6 49 477-528 29-81 (212)
433 3hix_A ALR3790 protein; rhodan 43.5 23 0.0008 31.5 4.6 38 713-750 51-89 (106)
434 2bdt_A BH3686; alpha-beta prot 43.3 12 0.00042 37.1 3.0 17 506-522 4-20 (189)
435 1wv9_A Rhodanese homolog TT165 43.3 16 0.00055 31.7 3.4 35 715-749 54-88 (94)
436 3uie_A Adenylyl-sulfate kinase 43.2 11 0.00038 38.0 2.6 20 503-522 24-43 (200)
437 2c95_A Adenylate kinase 1; tra 43.1 13 0.00043 37.1 3.0 20 503-522 8-27 (196)
438 2v6i_A RNA helicase; membrane, 42.8 25 0.00086 40.2 5.9 54 540-598 171-225 (431)
439 4gl2_A Interferon-induced heli 42.8 5.8 0.0002 48.7 0.5 70 715-788 57-142 (699)
440 3iwh_A Rhodanese-like domain p 42.7 11 0.00038 33.7 2.3 37 713-749 55-91 (103)
441 1yks_A Genome polyprotein [con 42.6 24 0.00082 40.6 5.7 68 540-622 177-245 (440)
442 3lnc_A Guanylate kinase, GMP k 42.5 9.5 0.00033 39.5 2.1 19 503-521 26-44 (231)
443 3t61_A Gluconokinase; PSI-biol 42.3 13 0.00044 37.4 3.0 18 505-522 19-36 (202)
444 2rhm_A Putative kinase; P-loop 42.3 10 0.00035 37.6 2.2 19 504-522 5-23 (193)
445 1ye8_A Protein THEP1, hypothet 42.2 13 0.00046 36.9 3.0 15 506-520 2-16 (178)
446 2plr_A DTMP kinase, probable t 41.9 11 0.00037 38.1 2.3 20 503-522 3-22 (213)
447 1f2t_A RAD50 ABC-ATPase; DNA d 41.8 15 0.00051 35.3 3.2 15 506-520 25-39 (149)
448 3g1w_A Sugar ABC transporter; 41.8 3.2E+02 0.011 28.4 17.9 27 714-740 186-212 (305)
449 2v54_A DTMP kinase, thymidylat 41.8 11 0.00037 37.9 2.3 20 503-522 3-22 (204)
450 2r2a_A Uncharacterized protein 41.7 15 0.00052 37.3 3.3 21 506-526 7-27 (199)
451 3n89_A Defective in GERM LINE 41.7 68 0.0023 35.7 8.8 72 1011-1090 184-259 (376)
452 2rep_A Kinesin-like protein KI 41.7 12 0.00042 42.0 2.9 25 497-521 107-133 (376)
453 3vkg_A Dynein heavy chain, cyt 41.6 19 0.00064 51.4 5.2 48 474-522 873-924 (3245)
454 4fcw_A Chaperone protein CLPB; 41.1 15 0.00052 39.6 3.5 18 505-522 48-65 (311)
455 3rc3_A ATP-dependent RNA helic 40.8 43 0.0015 40.8 7.7 74 542-629 322-401 (677)
456 2iut_A DNA translocase FTSK; n 40.7 25 0.00084 41.7 5.3 26 504-529 214-239 (574)
457 1w36_B RECB, exodeoxyribonucle 40.7 46 0.0016 43.5 8.5 60 506-565 18-81 (1180)
458 2i3b_A HCR-ntpase, human cance 40.6 16 0.00056 36.7 3.4 41 615-658 103-145 (189)
459 1ry6_A Internal kinesin; kines 40.6 16 0.00056 40.7 3.6 20 503-522 82-103 (360)
460 2f1r_A Molybdopterin-guanine d 40.3 9.9 0.00034 37.6 1.6 17 506-522 4-20 (171)
461 3o8b_A HCV NS3 protease/helica 40.2 24 0.00081 42.8 5.2 53 539-598 395-447 (666)
462 2l82_A Designed protein OR32; 40.2 83 0.0028 27.7 7.2 50 717-766 5-54 (162)
463 2fwr_A DNA repair protein RAD2 40.1 37 0.0013 39.1 6.9 76 698-788 119-198 (472)
464 3sr0_A Adenylate kinase; phosp 40.1 15 0.00051 37.5 3.0 19 506-524 2-20 (206)
465 3b9q_A Chloroplast SRP recepto 40.0 23 0.00077 38.5 4.6 20 503-522 99-118 (302)
466 4dzz_A Plasmid partitioning pr 39.9 95 0.0033 30.6 9.2 76 511-601 9-87 (206)
467 3tif_A Uncharacterized ABC tra 39.2 13 0.00044 38.8 2.4 17 503-519 30-46 (235)
468 2pez_A Bifunctional 3'-phospho 39.1 11 0.00039 37.0 1.9 19 503-521 4-22 (179)
469 1zuh_A Shikimate kinase; alpha 39.1 15 0.00053 35.5 2.9 19 505-523 8-26 (168)
470 3qf7_A RAD50; ABC-ATPase, ATPa 39.0 15 0.00052 41.1 3.2 17 506-522 25-41 (365)
471 1cke_A CK, MSSA, protein (cyti 38.9 15 0.00053 37.5 3.0 18 505-522 6-23 (227)
472 1ak2_A Adenylate kinase isoenz 38.9 15 0.00051 38.1 2.9 21 503-523 15-35 (233)
473 3c8u_A Fructokinase; YP_612366 38.9 13 0.00043 37.8 2.3 17 504-520 22-38 (208)
474 3s99_A Basic membrane lipoprot 38.6 4.3E+02 0.015 29.0 16.1 82 541-625 27-118 (356)
475 1via_A Shikimate kinase; struc 38.3 18 0.00061 35.4 3.2 17 506-522 6-22 (175)
476 3umf_A Adenylate kinase; rossm 38.2 17 0.00056 37.5 3.0 20 504-523 29-48 (217)
477 3fb4_A Adenylate kinase; psych 38.2 16 0.00056 37.0 3.0 17 507-523 3-19 (216)
478 2bwj_A Adenylate kinase 5; pho 38.0 17 0.00057 36.2 3.0 20 503-522 11-30 (199)
479 1nks_A Adenylate kinase; therm 37.9 16 0.00055 36.1 2.8 17 506-522 3-19 (194)
480 1gvn_B Zeta; postsegregational 37.9 12 0.00041 40.4 1.9 17 506-522 35-51 (287)
481 1qf9_A UMP/CMP kinase, protein 37.7 16 0.00056 36.0 2.9 17 506-522 8-24 (194)
482 1jjv_A Dephospho-COA kinase; P 37.7 14 0.00047 37.3 2.3 15 507-521 5-19 (206)
483 2iyv_A Shikimate kinase, SK; t 37.6 20 0.00068 35.3 3.5 18 505-522 3-20 (184)
484 1in4_A RUVB, holliday junction 37.6 17 0.00059 40.0 3.3 17 505-521 52-68 (334)
485 1aky_A Adenylate kinase; ATP:A 37.6 17 0.00058 37.1 3.0 19 504-522 4-22 (220)
486 1nij_A Hypothetical protein YJ 37.4 21 0.00071 39.1 3.9 14 507-520 7-20 (318)
487 1zak_A Adenylate kinase; ATP:A 37.4 19 0.00064 36.9 3.3 19 505-523 6-24 (222)
488 1zd8_A GTP:AMP phosphotransfer 37.3 16 0.00056 37.5 2.9 19 504-522 7-25 (227)
489 3tqc_A Pantothenate kinase; bi 37.2 48 0.0016 36.3 6.7 15 507-521 95-109 (321)
490 3l6u_A ABC-type sugar transpor 37.1 3.7E+02 0.013 27.7 16.9 35 703-739 185-219 (293)
491 1sky_E F1-ATPase, F1-ATP synth 36.9 34 0.0012 39.5 5.6 25 501-525 148-172 (473)
492 3dl0_A Adenylate kinase; phosp 36.9 18 0.0006 36.8 3.0 17 506-522 2-18 (216)
493 1e6c_A Shikimate kinase; phosp 36.8 18 0.00062 35.0 3.0 18 505-522 3-20 (173)
494 2yvu_A Probable adenylyl-sulfa 36.8 16 0.00055 36.2 2.6 20 503-522 12-31 (186)
495 2jaq_A Deoxyguanosine kinase; 36.8 18 0.0006 36.2 3.0 16 507-522 3-18 (205)
496 2p6r_A Afuhel308 helicase; pro 36.8 29 0.00098 42.6 5.4 84 698-788 51-144 (702)
497 2va8_A SSO2462, SKI2-type heli 36.7 59 0.002 39.8 8.3 76 540-624 252-363 (715)
498 2v9p_A Replication protein E1; 36.7 17 0.0006 39.5 3.0 18 503-520 125-142 (305)
499 3asz_A Uridine kinase; cytidin 36.5 16 0.00053 37.0 2.5 23 503-525 5-27 (211)
500 2pt5_A Shikimate kinase, SK; a 36.0 15 0.00052 35.4 2.3 15 507-521 3-17 (168)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-64 Score=599.96 Aligned_cols=389 Identities=39% Similarity=0.658 Sum_probs=361.5
Q ss_pred cCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001264 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 453 ~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+.+.|.++|.|+.+|.+++|++.+++.|..+||..|||+|.++||.+++|+|+|++++||||||++|++|++.++...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCc
Q 001264 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612 (1112)
Q Consensus 533 ~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~ 612 (1112)
+......++++|||+||++||.|++..+.+++...++++++++||.....+...+..+++|+|+||++|++++....
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--- 198 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---
Confidence 54334458899999999999999999999999888999999999999999988899999999999999999987643
Q ss_pred cccCCceEEEeccchhhhcCCCchhHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceE
Q 001264 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 613 ~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q 690 (1112)
..+.++++|||||||+|++++|...+..|+..+ ++.+|+|+||||+|..+..++..++.+++.+.++........+.+
T Consensus 199 ~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEE
T ss_pred cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccce
Confidence 568899999999999999999999999999885 678999999999999999999999999999998877777788899
Q ss_pred EEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001264 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 691 ~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
.+.......+...|+.+|.... .++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|..+||||
T Consensus 279 ~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 8888888889999999887743 45999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChhHHH
Q 001264 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDDLKA 846 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (1112)
|+++++|||||++++|||||+|.++..|+||+||+||.|+.|.|++|+++ .+...+..|++.|....+.||++|..
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 57788999999999999999998864
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-58 Score=541.13 Aligned_cols=391 Identities=42% Similarity=0.699 Sum_probs=353.7
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001264 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+.+.|..+|.|+.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred C-------------CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH
Q 001264 535 V-------------AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601 (1112)
Q Consensus 535 ~-------------~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L 601 (1112)
. ....++++|||+||++|+.|++..+..++...++.+++++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998889999999999999999989988999999999999
Q ss_pred HHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh--cCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001264 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN--IRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 602 ~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~--~~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~i~ 677 (1112)
.+++.... ..+..+++|||||||++++++|...+..++.. +++ ..|+|+||||++..+..++..++.+|+.+.
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99887643 46788999999999999999999999999875 333 689999999999999999999999998888
Q ss_pred ecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001264 678 VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 678 ~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~ 757 (1112)
+.........+.+.+.......+...+..++......+++||||+++..++.++..|...++.+..+||++++.+|..++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 87766677788888888888888888888888765678999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001264 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+.|++|..+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHH
Q 001264 838 QVVPDDLKALA 848 (1112)
Q Consensus 838 ~~vp~~l~~~~ 848 (1112)
+.+|.+|..++
T Consensus 400 ~~~~~~l~~~~ 410 (417)
T 2i4i_A 400 QEVPSWLENMA 410 (417)
T ss_dssp CCCCHHHHHHH
T ss_pred CcCCHHHHHHH
Confidence 99999887765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.9e-55 Score=513.45 Aligned_cols=373 Identities=33% Similarity=0.565 Sum_probs=337.7
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001264 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
..+.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 335667899999999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001264 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+++|||+||++|+.||+..+..++..+++.+..++||.....+...+..+++|+|+||++|.+++.... ..+..+++
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~---~~~~~~~~ 182 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKM 182 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---ccHhheeE
Confidence 789999999999999999999999889999999999999999988888899999999999999987642 46788999
Q ss_pred EEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc-h
Q 001264 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-D 699 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~-~ 699 (1112)
|||||||+|++++|...+..++..+++..|+|+||||++..+..++..++.+|+.+.+.........+.+.+...... .
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW 262 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh
Confidence 999999999999999999999999999999999999999999888889999998887776666667777777655544 4
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001264 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
++..+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||
T Consensus 263 k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 263 KFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 777777777654 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCCh
Q 001264 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 780 i~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999999998888776655554
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.8e-54 Score=505.69 Aligned_cols=378 Identities=31% Similarity=0.545 Sum_probs=325.0
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001264 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
..+..+.+|..++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345677899999999999999999999999999999999999999999999999999999999999886542 246
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCCccccCCce
Q 001264 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+++|||+||++|+.|++..+..++...++.+..++||.....+...+. .+++|+|+||++|.+++.... ..+..++
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~ 185 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 185 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCC
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCc
Confidence 789999999999999999999999999999999999999888877776 678999999999999987643 4577899
Q ss_pred EEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc-
Q 001264 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES- 698 (1112)
Q Consensus 620 ~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~- 698 (1112)
+|||||||++++++|...+..++..+++..|+|+||||++..+..++..++.+|..+.+.........+.+.+......
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 9999999999999999999999999999999999999999999999999999998888777766677777776655544
Q ss_pred hhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001264 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++||
T Consensus 266 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 266 WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 4666676666553 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHH
Q 001264 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKAL 847 (1112)
Q Consensus 779 Di~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~ 847 (1112)
|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 345 dip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999999999988888888776554
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-52 Score=493.49 Aligned_cols=371 Identities=33% Similarity=0.554 Sum_probs=331.5
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886542 24678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001264 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.... ..+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEE
Confidence 9999999999999999999999888999999999999888888888889999999999998886543 4678899999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHH
Q 001264 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||||++++.+|...+..++..+++..|+|+||||+|..+..++..++..|..+.+... .....+.+.+.......+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHH
Confidence 99999999888888999999999999999999999999999999999999876654432 34456677777777777777
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|+
T Consensus 248 ~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 248 CLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 77777765 35679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChh
Q 001264 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|..
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999999999999999999999999998887776666654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-51 Score=481.88 Aligned_cols=367 Identities=30% Similarity=0.552 Sum_probs=323.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||++|+.||+..+..++..+ ++.+.+++||.....+...+..+ ++|+|+||++|..++.... ..+.++++||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vViD 159 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 159 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEEe
Confidence 999999999999999998776 78999999999888777666654 7999999999999886543 457889999999
Q ss_pred cchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcc-ccccCceEEEEecccchhHH
Q 001264 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.... .....+.+.+.......+..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 239 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH
Confidence 9999987 478888899999888899999999999999999999999999877765543 33455667777777778888
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|...|||||+++++|||+|+
T Consensus 240 ~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 240 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 888877664 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCCh
Q 001264 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 783 v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..++..+.+.+......+|.
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 999999999999999999999999999999999999976 445666777776665555654
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.1e-51 Score=482.98 Aligned_cols=369 Identities=28% Similarity=0.468 Sum_probs=319.3
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001264 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
.+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456889999999999999999999999999999999999987 9999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
++++|||+||++|+.|++..+..++..+ ++.+.+.+++...... ...+++|+|+||++|.+++... ....+.++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhc--CCcChhhC
Confidence 6789999999999999999999998764 6778888887654322 1345799999999999988543 23567889
Q ss_pred eEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc
Q 001264 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 697 (1112)
Q Consensus 619 ~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~ 697 (1112)
++|||||||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.........+.+.+.....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999987 678889999999999999999999999999999999999999888877766666777777666554
Q ss_pred -chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001264 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..++..+..++.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 250 ~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 250 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred hHHHHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 4566666666654 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCC------CHHHHHHHHccccCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCCC
Q 001264 777 GLDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p~------s~~~y~QriGR~gR~G~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~vp 841 (1112)
|||+|++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ...+..|.+.+......++
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999999994 67899999999999999999999998764 6677777777766554444
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.7e-51 Score=476.42 Aligned_cols=358 Identities=31% Similarity=0.548 Sum_probs=311.3
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001264 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
..+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34689999999999999999999999999999999999998 9999999999999999999999886542 3477
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++++..... ...+++|+|+||++|.+++... ...+.++++|
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC---CcccccCCEE
Confidence 89999999999999999999999888888888888764322 1236899999999999988653 2568889999
Q ss_pred Eeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc-h
Q 001264 622 VMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-D 699 (1112)
Q Consensus 622 ViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~-~ 699 (1112)
||||||++.+ ++|...+..++..++++.|+|+||||+++.+..++..++.++..+.+.........+.+.+...... .
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEAD 229 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHH
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHH
Confidence 9999999988 7888899999999999999999999999999999999999998877776666666777766655444 4
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001264 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
+...+..++. ....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||
T Consensus 230 ~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 230 KFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 5555555444 345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCC------CHHHHHHHHccccCCCCccEEEEEecCCc-cCchHHHHHHHh
Q 001264 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALE 834 (1112)
Q Consensus 780 i~~v~~VI~~~~p~------s~~~y~QriGR~gR~G~~g~~~~~~~~~d-~~~~~~i~~~l~ 834 (1112)
+|++++||+|++|+ ++..|+||+||+||.|+.|.|++|++..+ ...+..+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999998754 344555555554
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4e-51 Score=503.13 Aligned_cols=359 Identities=29% Similarity=0.530 Sum_probs=306.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001264 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .|+++|+++|||||||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78899999999999999999999999876532 2234689999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001264 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+.. +++||||||++|++++.... ...+..+.+||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--ccccccCCEEEEECh
Confidence 999999999998743 34678899999998888877754 78999999999999886531 245788999999999
Q ss_pred hhhhcCCCchhHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCc----cccccCceEEEEec
Q 001264 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~----~~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..|..+.+... ......+.+.+...
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99999999999998887763 36799999999999999999999999876665432 22333455555444
Q ss_pred cc-chhHHHHHHH----HhhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001264 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ..+...++.. +......+++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|...|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 33 3333333333 333244679999999999999999999887 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001264 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+....
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998888888777543
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-52 Score=491.83 Aligned_cols=374 Identities=30% Similarity=0.525 Sum_probs=190.6
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001264 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
...++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999886542 3477
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++||.....+...+. +++|+|+||++|...+.... ..+.++++|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 99999999999999999999999888999999999998877766655 58999999999999886532 457789999
Q ss_pred EeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccch-h
Q 001264 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD-R 700 (1112)
Q Consensus 622 ViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~-k 700 (1112)
||||||++++++|...+..++..+++..|+|+||||+++.+..+...++..|..+.+.........+.+.+....... +
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 999999999999999999999999999999999999999999999999999988887766555555655554433333 5
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001264 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...+..++.. ...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 5555555543 346799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHH
Q 001264 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~ 845 (1112)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|..+.
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999999999999999998888888888776666665443
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-50 Score=467.61 Aligned_cols=357 Identities=34% Similarity=0.588 Sum_probs=321.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 699999999999999999999987653 2477899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.||+..+..++...++.+..++||.....+...+. +++|+|+||+.|..++.... ..+.++++||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 99999999999999999998888899999999998887776665 68999999999999886543 457889999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001264 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.+.+++|...+..++..+++..++|+||||+++.+..++..++.++..+.... ...+.+.+.......++..+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999889999988876655432 23566667677777888888
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001264 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..++.. ..+++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+++
T Consensus 231 ~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888863 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccC
Q 001264 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (1112)
Q Consensus 785 ~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~ 838 (1112)
+||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+.....
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999888888888765433
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-52 Score=504.55 Aligned_cols=365 Identities=28% Similarity=0.480 Sum_probs=178.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
++.+|..++|++.+++.|..+||..|+|+|.++|+.++.+ +++|++|+||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876542 34678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+||++|+.|++..+..+...+ ++.+.+.+++...... ...+++|+|+||++|++++... ....+.++++|
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~i 239 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKVF 239 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CCCCGGGCCEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhc--CCcCcccCCEE
Confidence 9999999999999999999988764 5677777777654321 1335799999999999998653 33567899999
Q ss_pred Eeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEeccc-ch
Q 001264 622 VMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
||||||+|++ .+|...+..++..++..+|+|+||||++..+..++..++.+|..+.+.........+.+.+..+.. ..
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH
Confidence 9999999987 688889999999999999999999999999999999999999988887766666667776655544 45
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001264 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
++..+..++.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||
T Consensus 320 ~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlD 398 (479)
T 3fmp_B 320 KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCc
Confidence 55666665554 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCC------CHHHHHHHHccccCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCC
Q 001264 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVV 840 (1112)
Q Consensus 780 i~~v~~VI~~~~p~------s~~~y~QriGR~gR~G~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~v 840 (1112)
+|++++||+|++|. +...|+||+||+||.|+.|.|++|+++.+ ..++..|.+.+......+
T Consensus 399 ip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 399 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999999999995 56899999999999999999999998764 666667766665544333
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-50 Score=497.88 Aligned_cols=358 Identities=29% Similarity=0.524 Sum_probs=304.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001264 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|++.++..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999887532 1234678999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001264 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+. .+++||||||++|++++.... ...+..+++||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeCH
Confidence 999999999998653 2466888999999888877764 478999999999999886531 235788999999999
Q ss_pred hhhhcCCCchhHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCc----cccccCceEEEEec
Q 001264 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~----~~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..+..+.+... ......+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99999999999998887663 36799999999999999999999998876665432 22333455555444
Q ss_pred cc-chhHHHHHHH----HhhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001264 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ..++..++.. +......+++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|..+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 33 3333333333 333344679999999999999999999887 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHh
Q 001264 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+.+.
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998888877777654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.8e-48 Score=442.04 Aligned_cols=335 Identities=33% Similarity=0.577 Sum_probs=288.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001264 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|++.|.+.|..+||..|+|+|.++|+.++.++++|+++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999999864 56799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC
Q 001264 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~ 633 (1112)
.||+..+..++..+++.+..++||.....+...+.. ++|+|+||++|..++.... ..+.++++|||||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS---CCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC---cchhhCcEEEEEChHHhhccc
Confidence 999999999998889999999999988887776654 8999999999998876532 457889999999999999999
Q ss_pred CchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc
Q 001264 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 634 f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
|...+..++..++...++++||||+|..+..+...++.++..+... .....+.+.+....... ...+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~ 219 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW--RSKVQALRE-NK 219 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS--HHHHHHHHT-CC
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH--HHHHHHHHh-CC
Confidence 9999999999999999999999999999999999999888765432 22334444444433332 222344433 34
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~ 793 (1112)
.+++||||+++..++.++..|. .+..+||+++..+|..+++.|++|..+|||||+++++|||+|++++||+|++|+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 6799999999999999998885 688999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHh
Q 001264 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
++..|+||+||+||.|+.|.|++|++ .+...+..|.+.+.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999 77666666665543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.9e-48 Score=469.64 Aligned_cols=346 Identities=21% Similarity=0.328 Sum_probs=285.4
Q ss_pred CCccccccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001264 463 PKPIKTWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 463 p~pi~~~~~--~~l~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
+.....|.. +++++.+...|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 344456654 7889999999998 89999999999999999999999999999999999999999842
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---H---hcCCeEEEeCchHHH------HHHHh
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---L---KRGTEIVVCTPGRMI------DILCT 607 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~g~~IiV~Tp~~L~------~~l~~ 607 (1112)
+..+|||+||++|+.|+...+..+ |+.+..++|+....+.... + ..+++|||+||++|. +.+..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 358999999999999999988875 7889999999887655322 2 356899999999874 22221
Q ss_pred cCCCccccCCceEEEeccchhhhcCC--CchhHHH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccc
Q 001264 608 SGGKITNLRRVTYLVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV 683 (1112)
Q Consensus 608 ~~~~~~~l~~i~~vViDEah~~~~~~--f~~~i~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~ 683 (1112)
...+.++++|||||||++++|| |.+.+.. ++....++.|+|+||||+++.+...+..++..+..+.+.. .+
T Consensus 160 ----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~ 234 (591)
T 2v1x_A 160 ----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SF 234 (591)
T ss_dssp ----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CC
T ss_pred ----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CC
Confidence 2456789999999999999988 8887765 4555667899999999999998888777776553332221 23
Q ss_pred cccCceEEEEecc--cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh
Q 001264 684 VNKDITQLVEVRP--ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (1112)
Q Consensus 684 ~~~~i~q~~~~~~--~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~ 761 (1112)
...++...+.... ...++..|+.+|......+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.
T Consensus 235 ~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~ 314 (591)
T 2v1x_A 235 NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS 314 (591)
T ss_dssp CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 3334443333222 23455667777766556789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHH
Q 001264 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~ 828 (1112)
+|..+|||||+++++|||+|+|++||+|++|.+++.|+|++||+||.|.+|.|++||++.|...+..
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred cCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776544433
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-48 Score=472.03 Aligned_cols=369 Identities=29% Similarity=0.451 Sum_probs=264.3
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001264 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
..|.++..|...++++.+++.|...||..|+++|.++|+.++.+ +++|++++||||||++|++|++..+... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34566777888899999999999999999999999999999998 9999999999999999999999887553 3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
.++++|||+||++|+.|++..+..++...++.+...+++..... ...+++|+|+||+.|..++.... ..+.++
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~ 260 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ---LDARDI 260 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC---SCCTTC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC---ccccCC
Confidence 46789999999999999999999998877777776666553322 23468999999999999886643 457889
Q ss_pred eEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecc-
Q 001264 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP- 696 (1112)
Q Consensus 619 ~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~- 696 (1112)
++|||||||++.+ .+|...+..++..+++..|+|+||||+++.+..+...++.++..+.+.........+.+.+....
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS 340 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCc
Confidence 9999999999987 67999999999999999999999999999999999999999988777666666566666655543
Q ss_pred cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001264 697 ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
...+...+..++.. ...+++||||+++..|+.++..|...++.+..+||+++..+|..+++.|++|..+|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 44555556665544 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCC------CCHHHHHHHHccccCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCCh
Q 001264 777 GLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p------~s~~~y~QriGR~gR~G~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++ .+...+..+.+.+......+|.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 9999999999999999 7899999999999999999999999984 5677788888887766666654
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-46 Score=444.29 Aligned_cols=325 Identities=25% Similarity=0.334 Sum_probs=269.6
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001264 478 IMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 478 l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+.+.++. ++| .|+|+|.++|+.++.|+++|+++|||||||++|++|++..+. .++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHH
Confidence 3445554 566 799999999999999999999999999999999999887752 378999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh---
Q 001264 557 HSDIRKFAKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM--- 629 (1112)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~--- 629 (1112)
+..+..++. .++.+..++||.+. ..++..+..+ ++|+|+||++|.+++.. ..+.++++|||||||++
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhc
Confidence 999999988 89999999999998 6667777776 99999999999888753 46778999999999765
Q ss_pred -------hc-CCCchh-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEecCccccccC
Q 001264 630 -------FD-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKD 687 (1112)
Q Consensus 630 -------~~-~~f~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~l~~p~~i~~~~~~~~~~~ 687 (1112)
++ ++|... +..++..++ +..|+|+|||| +|..+. .+...++. +.+.........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 44 889988 888888887 88999999999 565543 33333333 222333344456
Q ss_pred ceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCcc
Q 001264 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
+.+.+... .+...|..+|.. .++++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|.++
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 66666544 455566666665 348999999999999999999999999998 99994 444 9999999999
Q ss_pred EEEe----cCcccccCCCCC-CcEEEEeCCC--CCHHHHHHHHccccCCC----CccEEEEEecCCccCchHHHHHHHh
Q 001264 767 LLIA----TSVAARGLDVKE-LELVINFDAP--NHYEDYVHRVGRTGRAG----RKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 767 VLVa----T~v~~~GlDi~~-v~~VI~~~~p--~s~~~y~QriGR~gR~G----~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
|||| |+++++|||+|+ |++||+|++| .++..|+||+||+||.| ..|.|++|+ .+...+..|.+.+.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999987 589999999 56666677777666
No 18
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.3e-46 Score=457.58 Aligned_cols=373 Identities=18% Similarity=0.231 Sum_probs=288.8
Q ss_pred cccccccccccchHhhhcCHHHHHHHHhhcCceec-cCCCCCcccccccCCCCHHHHHHHH--------HCCCCCChHHH
Q 001264 424 YQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIH-GKDVPKPIKTWHQTGLTSKIMETIR--------KLNYEKPMPIQ 494 (1112)
Q Consensus 424 ~~~f~k~f~~~~~~~~~~~~~~~~~~r~~~~~~v~-~~~~p~pi~~~~~~~l~~~l~~~l~--------~~~~~~pt~iQ 494 (1112)
+.++-+.++...+.+..++.+++......+...+. |.. + .+.+..++. .+|| .|||+|
T Consensus 22 ~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------l-----d~~l~ea~a~vrea~~r~lG~-~pt~VQ 88 (844)
T 1tf5_A 22 YEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------T-----DDLLVEAFAVVREASRRVTGM-FPFKVQ 88 (844)
T ss_dssp HHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------H-----HHHHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------h-----HHHHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 45566667777788999999999877776654332 221 1 122223322 5899 999999
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001264 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
..++|.++.|+ |+.++||+|||++|++|++.+.+. |+.++||+||++||.|++.++..++..+|+++.++
T Consensus 89 ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 89 LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 999999999999999999855432 56899999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-cCC---------------C
Q 001264 575 YGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------F 634 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~---------------f 634 (1112)
+||.+...+. +..+++|+|+||++| .++|..+- .....+..+.++||||||+|| +++ |
T Consensus 159 ~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 159 LNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp CTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred eCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 9999875543 334699999999999 77776532 123467899999999999998 775 5
Q ss_pred chhHHHHHHhcCC---------CCcEE-----------------EEeccccHH---HHHH--HHHhcC-CCeEEE-----
Q 001264 635 EPQITRIVQNIRP---------DRQTV-----------------LFSATFPRQ---VEIL--ARKVLN-KPVEIQ----- 677 (1112)
Q Consensus 635 ~~~i~~il~~~~~---------~~q~i-----------------l~SAT~~~~---~~~l--~~~~l~-~p~~i~----- 677 (1112)
...+..|+..+++ .+|++ +||||++.. +... +..++. +..++.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 5788899999873 68888 999998743 3322 233332 211111
Q ss_pred --ec-----------------------------CccccccCce-------------------------------------
Q 001264 678 --VG-----------------------------GRSVVNKDIT------------------------------------- 689 (1112)
Q Consensus 678 --~~-----------------------------~~~~~~~~i~------------------------------------- 689 (1112)
+. ........|.
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IP 396 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIP 396 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECC
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEec
Confidence 00 0000000000
Q ss_pred ----------EEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001264 690 ----------QLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 690 ----------q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~ 758 (1112)
+.+.+.....|+..++..|.... .+.++||||+|+..++.|+..|...|+++..|||++.+.++..+..
T Consensus 397 tn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ 476 (844)
T 1tf5_A 397 TNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEE 476 (844)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTT
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHH
Confidence 01233455678888888887643 4568999999999999999999999999999999998888876666
Q ss_pred HhhcCCccEEEecCcccccCCCC--------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 759 DFKSNVCNLLIATSVAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~--------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
.|+.| .|||||++|+||+||+ ++.+||||++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 477 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 477 AGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 66655 6999999999999999 889999999999999999999999999999999999998875
No 19
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.3e-45 Score=446.30 Aligned_cols=341 Identities=20% Similarity=0.322 Sum_probs=277.7
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001264 467 KTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
.+|+.++|++.+...|.. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 99999999999999999999999999999999999999999843 346899
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH-hcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l-~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
|+|+++|+.|+...+.. +++.+..++|+....... ..+ ...++|+|+||++|...... ......++.+|
T Consensus 71 i~P~~aL~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~v 143 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLL 143 (523)
T ss_dssp ECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEE
T ss_pred ECChHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEE
Confidence 99999999999988876 478888888888766543 222 24589999999998522111 01234679999
Q ss_pred EeccchhhhcCC--CchhHHHHH--HhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEecCccccccCceEEEEec
Q 001264 622 VMDEADRMFDMG--FEPQITRIV--QNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 622 ViDEah~~~~~~--f~~~i~~il--~~~~~~~q~il~SAT~~~~~~~l~~~~l--~~p~~i~~~~~~~~~~~i~q~~~~~ 695 (1112)
||||||++.+|| |.+.+..+. ....+..++|+||||+++.+...+...+ .+|.. .+.. ....++. +.+.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~--~~r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISS--FDRPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE-EECC--CCCTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE-EeCC--CCCCceE--EEEE
Confidence 999999999988 766665442 2233678999999999988755443333 44543 3322 2223333 3333
Q ss_pred ccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001264 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
....+...++.+|... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|..+|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4456677788877654 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHH
Q 001264 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
+|||+|++++||+|++|.+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999877665554443
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-45 Score=470.80 Aligned_cols=330 Identities=18% Similarity=0.219 Sum_probs=262.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|..++++..+...+...++..|+|+|.++|+.++.|+++|++|+||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666777766666666667778999999999999999999999999999999999999988743 6789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001264 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++|+.|++..|..++. .+.+++|+.. +..+++|+||||++|.+++.... ..+.++++||||||
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEV 299 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhh
Confidence 9999999999999998765 5666888875 33568999999999999987753 35788999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH--HHHHHHHhcCCCeEEEecCccccccCceEEEEe---------c
Q 001264 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ--VEILARKVLNKPVEIQVGGRSVVNKDITQLVEV---------R 695 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~--~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~---------~ 695 (1112)
|+|++++|...+..++..+++..|+|+||||+|+. +..++..+...|+.+....... ..+.+++.. .
T Consensus 300 H~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEE
T ss_pred hhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeee
Confidence 99999999999999999999999999999999874 4456666666666554432211 111111110 0
Q ss_pred cc----------------------------------------------chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHH
Q 001264 696 PE----------------------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 696 ~~----------------------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~ 729 (1112)
.. ...+..++..+.. ...+++||||+++..|+.
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHH
Confidence 00 1222233333333 234699999999999999
Q ss_pred HHHHHHhcCCC---------------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001264 730 LFRDLLKHGYP---------------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 730 l~~~L~~~~~~---------------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
++..|...++. +..+||+|++.+|..++..|.+|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99988653322 789999999999999999999999999999
Q ss_pred cCcccccCCCCCCcEEEEeCCC--------CCHHHHHHHHccccCCC--CccEEEEEecCC
Q 001264 771 TSVAARGLDVKELELVINFDAP--------NHYEDYVHRVGRTGRAG--RKGCAITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~~~p--------~s~~~y~QriGR~gR~G--~~g~~~~~~~~~ 821 (1112)
|+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+|+++.
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999987663 47788999999999999 689999988765
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=9.2e-44 Score=431.03 Aligned_cols=369 Identities=19% Similarity=0.223 Sum_probs=254.9
Q ss_pred chHhhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHH---HH-HHHCCCCCChHHHHHHHHHHHcCCCEEEE
Q 001264 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIM---ET-IRKLNYEKPMPIQAQALPVIMSGRDCIGV 510 (1112)
Q Consensus 435 ~~~~~~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~---~~-l~~~~~~~pt~iQ~~ai~~il~g~dvii~ 510 (1112)
.+.+..++.+++......+...+.... ++.++ |+..+. ++ ...+|+ .|||+|..++|.++.|+ |+.
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iae 93 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-IPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAE 93 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-hHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eee
Confidence 345777888887766655543332211 12221 222211 11 123674 89999999999999998 999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC
Q 001264 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g 590 (1112)
++||||||++|++|++.+... |+.++||+||++||.|++.++..++..+|+++++++||.+.. ...+..+
T Consensus 94 m~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~ 163 (853)
T 2fsf_A 94 MRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAYA 163 (853)
T ss_dssp CCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHH
T ss_pred ecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhcC
Confidence 999999999999999965432 568999999999999999999999999999999999999864 3445557
Q ss_pred CeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-cCC---------------CchhHHHHHHhcCC---
Q 001264 591 TEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------FEPQITRIVQNIRP--- 647 (1112)
Q Consensus 591 ~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~---------------f~~~i~~il~~~~~--- 647 (1112)
++|+|||||+| .++|..+- .....++.+.++||||||+|+ +++ |...+..|+..++.
T Consensus 164 ~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~ 243 (853)
T 2fsf_A 164 ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEK 243 (853)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-----------------------
T ss_pred CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhc
Confidence 99999999999 78887542 112457899999999999998 554 56778888888864
Q ss_pred -----------------CCcEE------------------------EEeccccHHHHHH-----HHHhcC----------
Q 001264 648 -----------------DRQTV------------------------LFSATFPRQVEIL-----ARKVLN---------- 671 (1112)
Q Consensus 648 -----------------~~q~i------------------------l~SAT~~~~~~~l-----~~~~l~---------- 671 (1112)
.+|++ +||||++..+..+ +..++.
T Consensus 244 ~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~ 323 (853)
T 2fsf_A 244 EDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDG 323 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecC
Confidence 46654 8999986422211 111111
Q ss_pred -----------------------CC----eEEEecCccccccCce-----------------------------------
Q 001264 672 -----------------------KP----VEIQVGGRSVVNKDIT----------------------------------- 689 (1112)
Q Consensus 672 -----------------------~p----~~i~~~~~~~~~~~i~----------------------------------- 689 (1112)
.+ ..+.+.........|.
T Consensus 324 ~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~ 403 (853)
T 2fsf_A 324 EVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVV 403 (853)
T ss_dssp ---------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEE
T ss_pred cEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEE
Confidence 01 1111111111111111
Q ss_pred ------------EEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHH
Q 001264 690 ------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDREST 756 (1112)
Q Consensus 690 ------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~ 756 (1112)
+.+.+.....|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||.+.+.++..+
T Consensus 404 IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 404 VPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp CCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred cCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 012334566788899988876543 4589999999999999999999999999999999998888888
Q ss_pred HHHhhcCCccEEEecCcccccCCCCCC-------------------------------------cEEEEeCCCCCHHHHH
Q 001264 757 ISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------ELVINFDAPNHYEDYV 799 (1112)
Q Consensus 757 ~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------~~VI~~~~p~s~~~y~ 799 (1112)
...|+.| .|+|||++|+||+||+.. .+||+|++|.+...|+
T Consensus 484 a~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~ 561 (853)
T 2fsf_A 484 AQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDN 561 (853)
T ss_dssp HTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHH
T ss_pred HhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHH
Confidence 8889888 699999999999999974 6999999999999999
Q ss_pred HHHccccCCCCccEEEEEecCCccCc
Q 001264 800 HRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 800 QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
||+|||||.|.+|.+++|++..|..+
T Consensus 562 qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 562 QLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred hhccccccCCCCeeEEEEecccHHHH
Confidence 99999999999999999999877543
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-42 Score=436.98 Aligned_cols=337 Identities=19% Similarity=0.297 Sum_probs=266.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+.+.|..+||..|+|+|.++|+. +..++++|++||||||||++|.++++..+... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887642 56899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|++|+++||.|++..++.+ ..+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiD 152 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLD 152 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEEC
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEe
Confidence 9999999999999999644 4568999999998765443 12368999999999999887642 347899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcccccc---------CceEEEEec
Q 001264 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK---------DITQLVEVR 695 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~---------~i~q~~~~~ 695 (1112)
|||.+.+.++...+..++..++ +.|+|+||||+++ ...++..+ +.++ +.....+++.. .....+.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE-EECCCCSSCEEEEEEEECSSTTEEEEEET
T ss_pred chhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc-cCCCCCCCCceEEEEecCCcccceeeecC
Confidence 9999998889888888888876 8899999999985 35555544 3222 12111111100 000011111
Q ss_pred c--------cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------------------------
Q 001264 696 P--------ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG----------------------------- 738 (1112)
Q Consensus 696 ~--------~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~----------------------------- 738 (1112)
. .......+...+. ..+++||||+++..|+.++..|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 1 1233333333332 46899999999999999999998642
Q ss_pred -------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eC-------CCCCHHHHHH
Q 001264 739 -------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-------APNHYEDYVH 800 (1112)
Q Consensus 739 -------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~-------~p~s~~~y~Q 800 (1112)
+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ |+ .|.+..+|+|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 35899999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HHccccCCC--CccEEEEEecCCcc
Q 001264 801 RVGRTGRAG--RKGCAITFISEEDA 823 (1112)
Q Consensus 801 riGR~gR~G--~~g~~~~~~~~~d~ 823 (1112)
|+|||||.| ..|.||+|++..+.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999988 47999999987653
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.5e-43 Score=429.29 Aligned_cols=331 Identities=20% Similarity=0.275 Sum_probs=205.9
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+|+|.++|+.++.|+++|+++|||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999999887643 23377899999999999999999999999
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-HHHHh
Q 001264 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-~il~~ 644 (1112)
..++.+..++|+.....+...+..+++|+|+||++|.+++.... +..+.++++|||||||++.++++...+. .++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88999999999998777777777789999999999999886532 2367889999999999998876433332 22221
Q ss_pred ----cCCCCcEEEEeccccH-----------HHHHHHHHh------------------cCCCeEEEecCccccccC----
Q 001264 645 ----IRPDRQTVLFSATFPR-----------QVEILARKV------------------LNKPVEIQVGGRSVVNKD---- 687 (1112)
Q Consensus 645 ----~~~~~q~il~SAT~~~-----------~~~~l~~~~------------------l~~p~~i~~~~~~~~~~~---- 687 (1112)
..+..|+|+||||++. .+..+...+ ...|....+.........
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1466899999999853 121222211 111211111000000000
Q ss_pred --------------ce---EEE----------------------------------------------------------
Q 001264 688 --------------IT---QLV---------------------------------------------------------- 692 (1112)
Q Consensus 688 --------------i~---q~~---------------------------------------------------------- 692 (1112)
+. ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000
Q ss_pred -----------------------------------------------EecccchhHHHHHHHHhhhh---cCCeEEEEeC
Q 001264 693 -----------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFVH 722 (1112)
Q Consensus 693 -----------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~ 722 (1112)
.......|+..|+.+|.... ..+++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 00002446666777776543 4579999999
Q ss_pred CHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCCcEEEEe
Q 001264 723 SQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999775 5556677888999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 790 ~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
|+|+++..|+||+|| ||. +.|.||+|+++.+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 999 78999999987654
No 24
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-42 Score=438.77 Aligned_cols=332 Identities=21% Similarity=0.280 Sum_probs=270.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+|.+++|++.+.+.|..+||..|+|+|.++|+. ++.++++|+++|||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887642 5789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001264 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+|+++||.|++..+..+. .+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++||||||
T Consensus 75 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKILVADEI 147 (720)
T ss_dssp CSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC---TTGGGEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh---hhhhcCCEEEEECC
Confidence 999999999999996554 468999999998654332 12368999999999988887632 34788999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEE------EEecc----
Q 001264 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL------VEVRP---- 696 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~------~~~~~---- 696 (1112)
|.+.++++...+..++..++.+.|+|+||||+++ ...++..+ +.+. +.....+.+ +... +.+..
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~rp~~---l~~~~~~~~~~~~~~~~~~ 221 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWRPVK---LRRGVFYQGFVTWEDGSID 221 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCCSSE---EEEEEEETTEEEETTSCEE
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCCCCc---ceEEEEeCCeeeccccchh
Confidence 9999989999999999988878999999999986 34455443 3221 111111111 1111 11111
Q ss_pred -cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCee
Q 001264 697 -ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCL 742 (1112)
Q Consensus 697 -~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~ 742 (1112)
.......+...+. ..+++||||+++..|+.++..|... ...+.
T Consensus 222 ~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 222 RFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp ECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 1233333444443 4689999999999999999998753 13589
Q ss_pred eecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eC----CCCCHHHHHHHHccccCCC--Ccc
Q 001264 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD----APNHYEDYVHRVGRTGRAG--RKG 812 (1112)
Q Consensus 743 ~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~----~p~s~~~y~QriGR~gR~G--~~g 812 (1112)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+||+||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 77 5899999999999999988 579
Q ss_pred EEEEEecCCc
Q 001264 813 CAITFISEED 822 (1112)
Q Consensus 813 ~~~~~~~~~d 822 (1112)
.||+|+++.+
T Consensus 379 ~~~~l~~~~~ 388 (720)
T 2zj8_A 379 EGIIVSTSDD 388 (720)
T ss_dssp EEEEECSSSC
T ss_pred eEEEEecCcc
Confidence 9999998876
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.5e-42 Score=448.71 Aligned_cols=319 Identities=25% Similarity=0.335 Sum_probs=267.1
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|| .|||+|.++||.++.|+|+|++|+||||||++|+++++..+. .++++|||+||++||.|++..+..|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4788 699999999999999999999999999999988888887752 3789999999999999999999998
Q ss_pred hhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh----------h
Q 001264 564 AKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR----------M 629 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~---~~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~----------~ 629 (1112)
+ ..++.+++++||.+. ..+...+..+ ++|||+||++|++++.. ..+.++++|||||||+ |
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 7 778999999999988 7777888877 99999999999888753 5678899999999964 5
Q ss_pred hc-CCCchh-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEecCccccccCceEEEEe
Q 001264 630 FD-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (1112)
Q Consensus 630 ~~-~~f~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~ 694 (1112)
++ +||... +..++..++ .+.|+|+|||| +|..+. .+...++. +.+........++.+.+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEES
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEe
Confidence 56 899998 899999887 88999999999 565543 23333333 3334444455667777665
Q ss_pred cccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCccEEEe---
Q 001264 695 RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCNLLIA--- 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~-~ihg~~~~~~R~~~~~~F~~g~~~VLVa--- 770 (1112)
. .+...|+.+|.. .++++||||+++..|+.|+..|...|+.+. .+|| +|.. ++.|++|.++||||
T Consensus 295 ~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 295 S---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp C---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred c---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 5 455666666666 248999999999999999999999999998 9999 2555 99999999999999
Q ss_pred -cCcccccCCCCC-CcEEEEeCCCC-------------------------------------------------------
Q 001264 771 -TSVAARGLDVKE-LELVINFDAPN------------------------------------------------------- 793 (1112)
Q Consensus 771 -T~v~~~GlDi~~-v~~VI~~~~p~------------------------------------------------------- 793 (1112)
|+++++|||||+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~ 443 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKE 443 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999 99999999998
Q ss_pred -----------------CHHHHHHHHccccCCCC----ccEEEEEecCCccCchHHHHHHHh
Q 001264 794 -----------------HYEDYVHRVGRTGRAGR----KGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 794 -----------------s~~~y~QriGR~gR~G~----~g~~~~~~~~~d~~~~~~i~~~l~ 834 (1112)
++.+|+||+|||||.|. +|.+++|+ +|...+..|.+.+.
T Consensus 444 ~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 444 MFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 77899999999999653 34555555 78888888888776
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-42 Score=424.09 Aligned_cols=330 Identities=23% Similarity=0.289 Sum_probs=232.9
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|.++|+.++.|+++|++++||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++...+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 699999999999999999999999999999999999999987653 23477899999999999999999999999889
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCc-hhHHHHHHhc--
Q 001264 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE-PQITRIVQNI-- 645 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~-~~i~~il~~~-- 645 (1112)
+.+..++|+.....+...+..+++|+|+||++|..++.... ...+.++++|||||||++.+.+.. ..+..++...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 99999999997776666677779999999999999886542 236788999999999999876522 2222333322
Q ss_pred ---CCCCcEEEEeccccHH-----------HHHHHHHhcCCCeEEEecCc-----cccccCceEEEEec-----------
Q 001264 646 ---RPDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGGR-----SVVNKDITQLVEVR----------- 695 (1112)
Q Consensus 646 ---~~~~q~il~SAT~~~~-----------~~~l~~~~l~~p~~i~~~~~-----~~~~~~i~q~~~~~----------- 695 (1112)
.+..|+|+||||++.. +..+. ..+..+........ ............+.
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 2567999999998542 11111 11221111111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001264 696 -------------------------------------------------------------------------------- 695 (1112)
Q Consensus 696 -------------------------------------------------------------------------------- 695 (1112)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------ccchhHHHHHHHHhhhh---cCCeEEEEeC
Q 001264 696 --------------------------------------------------PESDRFLRLLELLGEWY---EKGKILIFVH 722 (1112)
Q Consensus 696 --------------------------------------------------~~~~k~~~ll~~l~~~~---~~~~vLIF~~ 722 (1112)
....|+..|..+|.... ..+++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 11346666666666543 3479999999
Q ss_pred CHHHHHHHHHHHHhcC------------CCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCCcEEEEe
Q 001264 723 SQEKCDALFRDLLKHG------------YPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~~------------~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
++..++.|+..|...+ ..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 9999999999998863 344555669999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHccccCCCCccEEEEEecCCccCch
Q 001264 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 790 ~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~ 826 (1112)
|+|+++..|+||+|| ||. ..|.||+|+++.+....
T Consensus 478 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 478 EYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp SCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999 998 79999999998765444
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.9e-43 Score=439.28 Aligned_cols=331 Identities=21% Similarity=0.286 Sum_probs=264.5
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001264 468 TWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 468 ~~~~~~--l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+|.+++ |++.+.+.|..+||..|+|+|.++|+.++.++++|+++|||||||++|.+|++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577788 9999999999999999999999999999999999999999999999999999988763 568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001264 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++|+++||.|++..++.+ ..+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++|||||
T Consensus 74 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE 146 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDE 146 (702)
T ss_dssp EESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEee
Confidence 999999999999999654 3468999999998765432 12368999999999998887632 3478899999999
Q ss_pred chhhhcCCCchhHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEE------Eecc
Q 001264 626 ADRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV------EVRP 696 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~------~~~~ 696 (1112)
||.+.++++...+..++..+ +++.|+|+||||+++ ...++.. ++.++ +.....+++ +...+ .+..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~r~~~---l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADY-YVSDWRPVP---LVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EECCCCSSC---EEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccCCCCCcc---ceEEEeeCCeeeccC
Confidence 99999988888888777665 578999999999986 4555554 43332 222222211 11111 1111
Q ss_pred cc-------hhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------CC
Q 001264 697 ES-------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------GY 739 (1112)
Q Consensus 697 ~~-------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------~~ 739 (1112)
.. .....+...+. ..+++||||+++..++.++..|... ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 11 13333344432 4689999999999999999988753 24
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eC---CCCCHHHHHHHHccccCCC--C
Q 001264 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD---APNHYEDYVHRVGRTGRAG--R 810 (1112)
Q Consensus 740 ~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~---~p~s~~~y~QriGR~gR~G--~ 810 (1112)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+||+||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 6888999999999999999999999999999999999999999999999 76 7899999999999999988 4
Q ss_pred ccEEEEEecCCc
Q 001264 811 KGCAITFISEED 822 (1112)
Q Consensus 811 ~g~~~~~~~~~d 822 (1112)
.|.||+|++..+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 799999998766
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.3e-43 Score=442.14 Aligned_cols=339 Identities=22% Similarity=0.276 Sum_probs=225.3
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001264 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++.++...+ .+.++++|||+||++|+.||+..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999887643 12347899999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-CchhH
Q 001264 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-f~~~i 638 (1112)
+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+.... +..+.++++|||||||++.+.. +...+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999888999999999987666666666789999999999999886532 2357889999999999987543 11112
Q ss_pred HHHHHh-----cCCCCcEEEEecccc-------HH-HHHHHHH---------------------hcCCCeEEEecCcc--
Q 001264 639 TRIVQN-----IRPDRQTVLFSATFP-------RQ-VEILARK---------------------VLNKPVEIQVGGRS-- 682 (1112)
Q Consensus 639 ~~il~~-----~~~~~q~il~SAT~~-------~~-~~~l~~~---------------------~l~~p~~i~~~~~~-- 682 (1112)
..++.. ..+..++|+||||+. .. +..+... +...|.........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 122222 246789999999986 11 2222111 11122111100000
Q ss_pred c-------c-----------------------------------------------------------------------
Q 001264 683 V-------V----------------------------------------------------------------------- 684 (1112)
Q Consensus 683 ~-------~----------------------------------------------------------------------- 684 (1112)
. .
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------ccCceEEEE----------------ecccchhHHHHHHHHhhhh---cC
Q 001264 685 -------------------------------NKDITQLVE----------------VRPESDRFLRLLELLGEWY---EK 714 (1112)
Q Consensus 685 -------------------------------~~~i~q~~~----------------~~~~~~k~~~ll~~l~~~~---~~ 714 (1112)
...+.+.+. ......|+..|..+|.... ..
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 000000000 0013456777777777653 45
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC----CCeeee--------cCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKHG----YPCLSL--------HGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~~----~~~~~i--------hg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~ 781 (1112)
+++||||+++..++.|+..|...+ +.+..+ ||+|++.+|..+++.|++ |.++|||||+++++|||||
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 799999999999999999999987 888888 559999999999999998 9999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCc
Q 001264 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 782 ~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
+|++||+||+|+++..|+||+|| ||. +.|.|++|++..+...
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999 998 6899999998766543
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.9e-43 Score=436.99 Aligned_cols=362 Identities=19% Similarity=0.245 Sum_probs=269.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|.++|+.|+.+ .++|++|+||||||++|++|++..+.. |.++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 345556678999 9999999999999875 699999999999999999999988754 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001264 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+..++..+++++.+++|+...... +..+..| ++|||+||+.|.+. ..+.++++|||||
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------~~~~~l~lVVIDE 498 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh--------hhccCCceEEecc
Confidence 9999999999999998889999999999887654 4445554 89999999977442 4678899999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHH
Q 001264 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
+|++... ....+.......|+|+||||+++....+ .++.+.....+.........+...+ ....+...++
T Consensus 499 aHr~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~---~~~~~~~~l~ 568 (780)
T 1gm5_A 499 QHRFGVK-----QREALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTML---VPMDRVNEVY 568 (780)
T ss_dssp CCCC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECC---CCSSTHHHHH
T ss_pred cchhhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEE---eccchHHHHH
Confidence 9996321 1222333445789999999987654333 3333332222222222122232221 1233445556
Q ss_pred HHHhhhh-cCCeEEEEeCCHH--------HHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001264 706 ELLGEWY-EKGKILIFVHSQE--------KCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 706 ~~l~~~~-~~~~vLIF~~s~~--------~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
..+.... .+++++|||++.. .++.++..|.. .++.+..+||+|++.+|..+++.|++|.++|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 6665443 3568999999654 47788888877 4789999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCC-CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHH
Q 001264 774 AARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p~-s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~ 852 (1112)
+++|||||++++||+|++|. +...|.||+||+||.|..|.||+|+++.+.. ....++.+..
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~----------------- 710 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTL----------------- 710 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHT-----------------
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHh-----------------
Confidence 99999999999999999996 6888999999999999999999998732211 1111111100
Q ss_pred HHHhhhhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001264 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 853 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...||.+++.++++|+.++.++.+|+|+..
T Consensus 711 ---------------~~dgf~iae~dL~~Rg~gd~lG~~qsg~~~ 740 (780)
T 1gm5_A 711 ---------------NTDGFKIAEYDLKTRGPGEFFGVKQHGLSG 740 (780)
T ss_dssp ---------------CCCSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred ---------------hhccchhhHhhHhccCcchhhhhhhcCCCc
Confidence 135888999999999999999999999754
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.8e-43 Score=453.32 Aligned_cols=324 Identities=19% Similarity=0.300 Sum_probs=266.6
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001264 480 ETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
+.+. .+||. | |+|.++||.++.|+|+|++|+||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 4343 48999 9 9999999999999999999999999998 99999888764 36899999999999999999
Q ss_pred HHHHHhhhcCc----eEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 559 DIRKFAKVMGV----RCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++ .+++++||.+...+ ...+.. ++|+||||++|++++.. |.++++|||||||+|++
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh
Confidence 99999998888 89999999988764 445556 99999999999887632 66899999999999998
Q ss_pred CCCchhHHHHHHhc-----------CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchh
Q 001264 632 MGFEPQITRIVQNI-----------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 632 ~~f~~~i~~il~~~-----------~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|...+..++..+ +...|+++||||++.. ..++..++.++..+.+.........+.+.+. ...+
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhH
Confidence 566777777665 4568999999999877 5455555555554555555555566666655 3455
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe----cCcccc
Q 001264 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA----TSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa----T~v~~~ 776 (1112)
...|..+|... ++++||||+++..|+.++..|... +.+..+||++. .+++.|++|.++|||| |+++++
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 55666666653 578999999999999999999888 99999999984 7899999999999999 999999
Q ss_pred cCCCCCC-cEEEEeCCC---------------------------------------------------------------
Q 001264 777 GLDVKEL-ELVINFDAP--------------------------------------------------------------- 792 (1112)
Q Consensus 777 GlDi~~v-~~VI~~~~p--------------------------------------------------------------- 792 (1112)
|||||+| ++||+|++|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999995 999999999
Q ss_pred --------CCHHHHHHHHccccCCCCcc--EEEEEecCCccCchHHHHHHHhh
Q 001264 793 --------NHYEDYVHRVGRTGRAGRKG--CAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 793 --------~s~~~y~QriGR~gR~G~~g--~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
.+...|+||+|||||.|..| .+++|+...+...+..|.+.+..
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987766 48888888888888888888874
No 31
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.9e-42 Score=416.65 Aligned_cols=326 Identities=19% Similarity=0.250 Sum_probs=261.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++...+. |+.|+||+||++||.|++.++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4898 99999999999999998 999999999999999999765442 567999999999999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccCCceEEEeccchhhh-c-------
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-D------- 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~------- 631 (1112)
+..+|+++.+++||.+.... .+..+|+|+|+||++| .++|..+- .....+..+.++||||||+|| |
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 99999999999999986543 3344699999999999 78886542 123567889999999999998 4
Q ss_pred --------CCCchhHHHHHHhcC---------CCCcEE-----------------EEeccccH---HHHHH--HHHhcC-
Q 001264 632 --------MGFEPQITRIVQNIR---------PDRQTV-----------------LFSATFPR---QVEIL--ARKVLN- 671 (1112)
Q Consensus 632 --------~~f~~~i~~il~~~~---------~~~q~i-----------------l~SAT~~~---~~~~l--~~~~l~- 671 (1112)
++|...+..|+..++ ..+|++ +||||++. .+... +..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 357789999999997 678998 99999875 33322 222332
Q ss_pred CC-------eEEEecC-----------------------------ccccccCce--------------------------
Q 001264 672 KP-------VEIQVGG-----------------------------RSVVNKDIT-------------------------- 689 (1112)
Q Consensus 672 ~p-------~~i~~~~-----------------------------~~~~~~~i~-------------------------- 689 (1112)
+. ..+.+.. .......|.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 1111110 000000011
Q ss_pred ---------------------EEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001264 690 ---------------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 690 ---------------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~ 747 (1112)
+.+.......|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 012334456788888888876544 4589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCC--------------------------------------------
Q 001264 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------------- 783 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------------- 783 (1112)
+.+.++..+...|+.| .|+|||++|+||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888887777888877 699999999999999975
Q ss_pred --------cEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccC
Q 001264 784 --------ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 784 --------~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~ 824 (1112)
.+||+|+.|.+...|+|++||+||.|.+|.+++|++..|..
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987753
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-41 Score=432.38 Aligned_cols=332 Identities=20% Similarity=0.270 Sum_probs=213.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++||||||++|+.||+..|..++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999987753 2347789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-HHHH
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-~il~ 643 (1112)
...++.++.++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--cccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999877777777788999999999999988653 22367889999999999988765332222 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHHH------------------hcCCCeEEEecCcccccc----
Q 001264 644 NI----RPDRQTVLFSATFPR-----------QVEILARK------------------VLNKPVEIQVGGRSVVNK---- 686 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~~------------------~l~~p~~i~~~~~~~~~~---- 686 (1112)
.. .+..|+|+||||++. .+..+... ++..|....+........
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 21 566899999999852 22222211 112221111000000000
Q ss_pred --------------C------ceEE--E----------------------------------------------------
Q 001264 687 --------------D------ITQL--V---------------------------------------------------- 692 (1112)
Q Consensus 687 --------------~------i~q~--~---------------------------------------------------- 692 (1112)
. +... .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0000 0
Q ss_pred ------------------------------------------------EecccchhHHHHHHHHhhhh---cCCeEEEEe
Q 001264 693 ------------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 693 ------------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
.......|+..|+.+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 00002346666666666532 357999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCCcEEEE
Q 001264 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999873 5667778999999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
||+|+++..|+||+|| ||. +.|.||+|++..+.
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999999 999 79999999987654
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.1e-41 Score=438.25 Aligned_cols=370 Identities=19% Similarity=0.218 Sum_probs=287.6
Q ss_pred CCCCHHHHHHH-HHCCCCCChHHHHHHHHHHHc----CC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 472 TGLTSKIMETI-RKLNYEKPMPIQAQALPVIMS----GR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 472 ~~l~~~l~~~l-~~~~~~~pt~iQ~~ai~~il~----g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
++++..+...+ ..++|. |||+|.++|+.++. |+ ++|++++||||||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 44556666655 457875 79999999999986 66 9999999999999999999987754 367999
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|||||++||.||+..+..++..+++.+.+++|+.+..+. +..+..| ++|||+||+.|.. ...+.++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~--------~~~~~~l~l 728 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS--------DVKFKDLGL 728 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS--------CCCCSSEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--------Cccccccce
Confidence 999999999999999999888888999998887766544 3445554 8999999986521 246789999
Q ss_pred EEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchh
Q 001264 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||||+ |......++..++...++|+||||+++....++...+.++..+. ..+.....+...+.....
T Consensus 729 vIiDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~--~~~~~r~~i~~~~~~~~~--- 798 (1151)
T 2eyq_A 729 LIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA--TPPARRLAVKTFVREYDS--- 798 (1151)
T ss_dssp EEEESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC--CCCCBCBCEEEEEEECCH---
T ss_pred EEEechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe--cCCCCccccEEEEecCCH---
Confidence 99999999 34566777888888899999999988776666655555443222 122222234433332222
Q ss_pred HHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001264 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
......++.....++++||||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|.++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222233334445789999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCC-CCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001264 779 DVKELELVINFDA-PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 779 Di~~v~~VI~~~~-p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
|||++++||++++ ++++..|+||+||+||.|+.|.||+|+.+.+.. .....+.+. .+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l-~~~~~~rl~-------------------~i-- 936 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM-TTDAQKRLE-------------------AI-- 936 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGS-CHHHHHHHH-------------------HH--
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcccc-CHHHHHHHH-------------------HH--
Confidence 9999999999998 568999999999999999999999988754321 111222111 11
Q ss_pred hhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCC
Q 001264 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (1112)
Q Consensus 858 ~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~ 895 (1112)
.....-|.||.++..++++|++++.++..|+|+
T Consensus 937 -----~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~ 969 (1151)
T 2eyq_A 937 -----ASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 969 (1151)
T ss_dssp -----TTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -----HHhhccCCcchHHHHHhccCCCcccCCccccCC
Confidence 111223679999999999999999999999984
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=424.52 Aligned_cols=312 Identities=19% Similarity=0.260 Sum_probs=251.8
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++|. |+|+|.++|+.++.|+++|+++|||||||++|+++++..+.. +.++||++||++|+.|++..|..+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHH
Confidence 35664 999999999999999999999999999999999999987643 678999999999999999999987
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
+. .+..++|+.... ..++|+||||++|..++.... ..+.++++|||||||+|.++++...+..++.
T Consensus 153 ~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 153 FG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred hC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 65 567788887542 358999999999998887643 4678899999999999999999999999999
Q ss_pred hcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEecCccccccCceEEEEec---------cc---------------
Q 001264 644 NIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNKDITQLVEVR---------PE--------------- 697 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~--~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~---------~~--------------- 697 (1112)
.+++..|+|+||||+|+... .++......++.+....... ..+.+++... +.
T Consensus 219 ~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred hcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 99999999999999987543 33333445565554432211 1222222110 00
Q ss_pred -------------------------------chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC------
Q 001264 698 -------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP------ 740 (1112)
Q Consensus 698 -------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~------ 740 (1112)
...+..++..+.. ...+++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 1112223333332 13458999999999999999998765443
Q ss_pred ---------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEE
Q 001264 741 ---------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (1112)
Q Consensus 741 ---------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI 787 (1112)
+..+||+|++.+|..++..|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 77899999999999999999999999999999999999999999999
Q ss_pred E----eCC----CCCHHHHHHHHccccCCCC--ccEEEEEecCC
Q 001264 788 N----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 788 ~----~~~----p~s~~~y~QriGR~gR~G~--~g~~~~~~~~~ 821 (1112)
+ ||. |.++..|+||+||+||.|. .|.||+|+++.
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9 999 8999999999999999996 59999999865
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.6e-40 Score=394.38 Aligned_cols=321 Identities=22% Similarity=0.305 Sum_probs=251.3
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|.++++.++.+ ++|++++||+|||++++++++..+.. .+.++||||||++|+.||+.++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999999 99999999999999999999988762 356899999999999999999999874444
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001264 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
..+..++|+........ +..+++|+|+||+.|...+.... ..+.++++|||||||++.+......+...+....+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 58888888887665433 33458999999999998876532 467889999999999998665555566666666788
Q ss_pred CcEEEEeccccHH---HHHHHHHhcCCCeEEEecCccc----cccCceEEEE----------------------------
Q 001264 649 RQTVLFSATFPRQ---VEILARKVLNKPVEIQVGGRSV----VNKDITQLVE---------------------------- 693 (1112)
Q Consensus 649 ~q~il~SAT~~~~---~~~l~~~~l~~p~~i~~~~~~~----~~~~i~q~~~---------------------------- 693 (1112)
.++|+||||++.. +..+...+...++.+....... ........+.
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999743 3334333322221111000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001264 694 -------------------------------------------------------------------------------- 693 (1112)
Q Consensus 694 -------------------------------------------------------------------------------- 693 (1112)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ---------------------ecccchhHHHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC---
Q 001264 694 ---------------------VRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--- 746 (1112)
Q Consensus 694 ---------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg--- 746 (1112)
......|+..|..+|.... ..+++||||++...++.++..|...|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 0023446666777776653 5679999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC
Q 001264 747 -----AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 747 -----~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
+|+..+|..+++.|++|.++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+ |.+|+|+++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999976
Q ss_pred c
Q 001264 822 D 822 (1112)
Q Consensus 822 d 822 (1112)
+
T Consensus 476 t 476 (494)
T 1wp9_A 476 T 476 (494)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-40 Score=427.12 Aligned_cols=332 Identities=20% Similarity=0.276 Sum_probs=212.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++.+|||+||++|+.||+..+..++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999998876542 2336789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHH-HHHH
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~-~il~ 643 (1112)
...++.++.++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++...+....+. .++.
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--ccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999777666666677999999999999988653 22367889999999999988765322222 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHH------------------HhcCCCeEEEecCcccccc----
Q 001264 644 NI----RPDRQTVLFSATFPR-----------QVEILAR------------------KVLNKPVEIQVGGRSVVNK---- 686 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~------------------~~l~~p~~i~~~~~~~~~~---- 686 (1112)
.. .+..|+|+||||++. .+..+.. .++..|....+........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 21 566899999999852 2222211 1222222111100000000
Q ss_pred --------------Cc------eEE--EE---------------------------------------------------
Q 001264 687 --------------DI------TQL--VE--------------------------------------------------- 693 (1112)
Q Consensus 687 --------------~i------~q~--~~--------------------------------------------------- 693 (1112)
.+ .+. ..
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000 00
Q ss_pred -------------------------------------------------ecccchhHHHHHHHHhhhh---cCCeEEEEe
Q 001264 694 -------------------------------------------------VRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 694 -------------------------------------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
......|+..|..+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0002345556666666543 357999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCCcEEEE
Q 001264 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------~~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5566677999999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
||+|+|+..|+||+|| ||. ..|.||+|++..+.
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999 999 68999999987543
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=419.55 Aligned_cols=329 Identities=21% Similarity=0.284 Sum_probs=230.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHHHHHHhhh
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~~~~~~~~ 566 (1112)
..|+|+|.++|+.++.|+++|++++||+|||++|++|++.++...+. .+.+..+|||+||++|+.|| +..+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36999999999999999999999999999999999999988765321 12346899999999999999 9999998765
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CCccccCCceEEEeccchhhhcCCCchhHHH-HH
Q 001264 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITR-IV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~~f~~~i~~-il 642 (1112)
++.+..++|+.........+..+++|||+||++|...+.... .....+..+++|||||||++...++...+.. ++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 588999999987666556666789999999999998774321 1234678899999999999866554444333 22
Q ss_pred Hh----cC---------CCCcEEEEeccccHH-----------HHHHHHHhcCCCeEEEecCc----cccccCceEEEEe
Q 001264 643 QN----IR---------PDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGGR----SVVNKDITQLVEV 694 (1112)
Q Consensus 643 ~~----~~---------~~~q~il~SAT~~~~-----------~~~l~~~~l~~p~~i~~~~~----~~~~~~i~q~~~~ 694 (1112)
.. .. +..|+|+||||++.. +..+...+....+....... ............+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11 678999999999861 22222221110110000000 0000000000000
Q ss_pred cc------------------------------------------------------------------------------
Q 001264 695 RP------------------------------------------------------------------------------ 696 (1112)
Q Consensus 695 ~~------------------------------------------------------------------------------ 696 (1112)
..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------cchhHHHHHHHHhhhh---c-CCe
Q 001264 697 --------------------------------------------------------ESDRFLRLLELLGEWY---E-KGK 716 (1112)
Q Consensus 697 --------------------------------------------------------~~~k~~~ll~~l~~~~---~-~~~ 716 (1112)
...|+..|+.+|...+ . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 1122223334444322 2 679
Q ss_pred EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCC--------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001264 717 ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGA--------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~------~~~~~~ihg~--------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
+||||+++..++.|+..|... |+.+..+||+ |++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001264 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 783 v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
|++||+||+|+|+..|+||+||+||.| .+++|+...+
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 999999999999999999999976654 4555554433
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.7e-39 Score=410.99 Aligned_cols=308 Identities=19% Similarity=0.242 Sum_probs=243.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++| .|+|+|.++|+.++.|+++|+++|||||||++|+++++..+.. ++++||++||++|+.|++..+..++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 455 4899999999999999999999999999999999998876542 6789999999999999999998865
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~ 644 (1112)
. ++.+..++|+.... ..++|+|+||++|..++.... ..+.++++|||||||++.+++|...+..++..
T Consensus 107 ~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp ----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred C--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 4 67888899987532 458999999999999887643 45788999999999999999999999999999
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEe-cCccccccCceEEE----------------------------
Q 001264 645 IRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQV-GGRSVVNKDITQLV---------------------------- 692 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~l---~~p~~i~~-~~~~~~~~~i~q~~---------------------------- 692 (1112)
+++..|+|+||||+|+.. .++.++. ..++.+.. .....+ +.+.+
T Consensus 175 l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~p---l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVP---LEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSC---EEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCcc---ceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 999999999999998654 3444432 12222221 111110 11110
Q ss_pred -----------------------------------------------------------------EecccchhHHHHHHH
Q 001264 693 -----------------------------------------------------------------EVRPESDRFLRLLEL 707 (1112)
Q Consensus 693 -----------------------------------------------------------------~~~~~~~k~~~ll~~ 707 (1112)
.......++..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 001122334556666
Q ss_pred HhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------------------------CeeeecCCC
Q 001264 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGY---------------------------------------PCLSLHGAK 748 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~ihg~~ 748 (1112)
|... ..+++||||+++..|+.++..|...++ .+..+||+|
T Consensus 331 l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 331 LRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 6543 356999999999999999999977655 578999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCC---------CHHHHHHHHccccCCC--CccEEEEE
Q 001264 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~---------s~~~y~QriGR~gR~G--~~g~~~~~ 817 (1112)
++.+|..++..|.+|.++|||||+++++|||+|+ ..||++++|. ++..|+||+|||||.| ..|.||++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5555555555 9999999999999998 56777777
Q ss_pred ec
Q 001264 818 IS 819 (1112)
Q Consensus 818 ~~ 819 (1112)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.8e-38 Score=344.78 Aligned_cols=239 Identities=46% Similarity=0.832 Sum_probs=220.9
Q ss_pred hcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHH
Q 001264 440 RMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 440 ~~~~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~ 519 (1112)
.++.+++..++..+.+.+.|..+|.|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCch
Q 001264 520 AFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPG 599 (1112)
Q Consensus 520 ~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~ 599 (1112)
+|++|++.++..++......++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998766555567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
+|.+++.... ..+.++.+|||||||+|++++|...+..|+..++++.|+|+||||+|+.+..++..++.+|+.|.++
T Consensus 162 ~l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 162 RLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999987643 4688899999999999999999999999999999999999999999999999999999999998886
Q ss_pred Cc
Q 001264 680 GR 681 (1112)
Q Consensus 680 ~~ 681 (1112)
..
T Consensus 239 ~~ 240 (242)
T 3fe2_A 239 AL 240 (242)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=9.3e-41 Score=408.86 Aligned_cols=323 Identities=17% Similarity=0.188 Sum_probs=244.1
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001264 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 472 ~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+++++.+.+.|... ...|+|+|++++|.++.|+++|++++||||||++|++|++..+.. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34444444444332 478899998899999999999999999999999999999988765 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
||.|++..+. ++.+.. .+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +
T Consensus 227 La~Qi~~~l~------~~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 227 VAAEMEEALR------GLPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHTT------TSCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHhc------CCceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-C
Confidence 9999998775 223321 111100 001134577888988887766543 35888999999999998 7
Q ss_pred CCCchhHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhh
Q 001264 632 MGFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
++|...+..|+..++ +++|+|+||||++..+..++. .++..+.+... . + ...+..++..|..
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~------------~-~~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I------------P-ERSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C------------C-SSCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C------------C-HHHHHHHHHHHHh
Confidence 778888888887775 789999999999876443222 23332322211 0 0 1111223333433
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEE----
Q 001264 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV---- 786 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V---- 786 (1112)
..+++||||+++..|+.++..|...++.+..+||. +|..+++.|++|..+|||||+++++||||+ +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred ----------------EEeCCCCCHHHHHHHHccccCCCC-ccEEEEEec---CCccCchHHHHHHHhhccCCCCh
Q 001264 787 ----------------INFDAPNHYEDYVHRVGRTGRAGR-KGCAITFIS---EEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 787 ----------------I~~~~p~s~~~y~QriGR~gR~G~-~g~~~~~~~---~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|+|++|.+.++|+||+||+||.|. .|.||+|++ +.+...+..|...+......+|.
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 778889999999999999999965 899999998 78888888888887766666654
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.9e-39 Score=405.24 Aligned_cols=338 Identities=20% Similarity=0.261 Sum_probs=254.5
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
+.++..|..++|++.+.+.|...+ ..|+++|+++|+.++.+ ++++++|+||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456789999999999999999888 78999999999988854 679999999999999 45555222111 112367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
.++|++|+++||.|++..+... +++.+...+|+...... ....+++|+|+|||+|...+... ..+.++++|
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~l 212 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED----HDLSRYSCI 212 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEE
Confidence 8999999999999998765443 34333333332211100 11245799999999999887653 358899999
Q ss_pred Eeccch-hhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchh
Q 001264 622 VMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 622 ViDEah-~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
||||+| ++++..+...+...+....++.|+|+||||++. ..++. ++.++..+.+.+... .+.+.+........
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~~---pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRTY---PVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCCC---CEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCccc---ceEEEEecCCchhH
Confidence 999999 477755444444444455678999999999964 34444 444444455554433 34444433344444
Q ss_pred HHHHHHHHhhh---hcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCeeeecCCCCHHHHHHHHHHhh-----
Q 001264 701 FLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLK-----------HGYPCLSLHGAKDQTDRESTISDFK----- 761 (1112)
Q Consensus 701 ~~~ll~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~-----------~~~~~~~ihg~~~~~~R~~~~~~F~----- 761 (1112)
...++..+... ...+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 44444433332 2468999999999999999999975 4788999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001264 762 SNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~------------------p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
+|..+|||||+++++|||||+|.+||++++ |.+...|+||+|||||. ..|.||+|+++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999888 89999999999999999 7999999997644
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.9e-39 Score=385.92 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=218.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCE-EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 486 NYEKPMPIQAQALPVIMSGRDC-IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dv-ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|+.+|+|+|. +||.++.++++ |++++||||||++|++|++.++.. .++++|||+||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6789999985 79999999988 888999999999999999987665 36789999999999999998774
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH-
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ- 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~- 643 (1112)
++.+....+.... ....+..|.|+|++.|...+... ..|.++++|||||||++ +.++...+..+..
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333222221111 11235679999999998877543 45788999999999976 4333333333322
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCC
Q 001264 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s 723 (1112)
...++.|+|+||||+|..+..+ +..++..+.+.. ..+... +..++..+.. ..+++||||++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~-------------~~~~~~~l~~--~~~~~lVF~~s 197 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS-------------WNTGFDWITD--YQGKTVWFVPS 197 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC-------------CSSSCHHHHH--CCSCEEEECSS
T ss_pred hcCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCchh-------------hHHHHHHHHh--CCCCEEEEcCC
Confidence 3456899999999998754322 233443333321 111000 0112233333 25799999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeC-------------
Q 001264 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD------------- 790 (1112)
Q Consensus 724 ~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~------------- 790 (1112)
+..|+.++..|...|+.+..+||.+. ..+++.|++|..+|||||+++++|||||+ ++||||+
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~ 272 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPE 272 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccc
Confidence 99999999999999999999999765 57899999999999999999999999999 9999999
Q ss_pred -------CCCCHHHHHHHHccccCCCC-ccEEEEEecC
Q 001264 791 -------APNHYEDYVHRVGRTGRAGR-KGCAITFISE 820 (1112)
Q Consensus 791 -------~p~s~~~y~QriGR~gR~G~-~g~~~~~~~~ 820 (1112)
+|.+...|+||+||+||.|. .|.|++|+..
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-37 Score=414.25 Aligned_cols=341 Identities=17% Similarity=0.208 Sum_probs=258.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001264 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
|.....+.|...+|..++|+|.++++.++. +.++|++||||||||++|.+||++++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 455667777778899999999999999985 56799999999999999999999998763 35689999999999
Q ss_pred HHHHHHHHHH-HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 553 VQQIHSDIRK-FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~-~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..|.. |...+|++++.++|+..... . ...+++|+||||++|..++.... ....++++++|||||+|.|.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~-~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWK-QRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTT-TCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcc-cccccceeeEEEeechhhcCC
Confidence 9999999976 55568999999998765332 2 22458999999999876664432 234578999999999998876
Q ss_pred CCCchhHHHHHH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccc---hhH
Q 001264 632 MGFEPQITRIVQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES---DRF 701 (1112)
Q Consensus 632 ~~f~~~i~~il~-------~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~---~k~ 701 (1112)
. .+..+..++. .+++..|+|+||||+++ ...++.++...+..+..-.....+..+..++...... .++
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 4 4555544443 45678999999999985 4567766654442222222222222333333222221 111
Q ss_pred ----HHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc----------------------------------CCCeee
Q 001264 702 ----LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----------------------------------GYPCLS 743 (1112)
Q Consensus 702 ----~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 743 (1112)
..+...+......+++||||+++..|+.++..|... ...++.
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 223344555556789999999999999888776431 245889
Q ss_pred ecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eC------CCCCHHHHHHHHccccCCCC--c
Q 001264 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD------APNHYEDYVHRVGRTGRAGR--K 811 (1112)
Q Consensus 744 ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~------~p~s~~~y~QriGR~gR~G~--~ 811 (1112)
+||+|++.+|..+.+.|++|.++|||||+++++|||+|...+||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999983 32 36789999999999999986 6
Q ss_pred cEEEEEecCCccCch
Q 001264 812 GCAITFISEEDAKYS 826 (1112)
Q Consensus 812 g~~~~~~~~~d~~~~ 826 (1112)
|.|++|+.+.+..++
T Consensus 1299 G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEEEEGGGHHHH
T ss_pred eEEEEEecchHHHHH
Confidence 999999887655443
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-38 Score=386.37 Aligned_cols=311 Identities=17% Similarity=0.132 Sum_probs=238.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++|+.++.++++|++++||||||++|+++++..+... ++++||||||++|+.||+..+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999999999999999998877541 3489999999999999999999986666
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
++.+..++||.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6788889998776554 456789999999976432 124577899999999999865 567888888888
Q ss_pred CCcEEEEeccccHHHHH-HHHHhcCCCeEEEecCcc------ccccCceEEEEecc---------------------cch
Q 001264 648 DRQTVLFSATFPRQVEI-LARKVLNKPVEIQVGGRS------VVNKDITQLVEVRP---------------------ESD 699 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~-l~~~~l~~p~~i~~~~~~------~~~~~i~q~~~~~~---------------------~~~ 699 (1112)
..++|+||||+++.... +....+..+..+.+.... .....+.......+ ...
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 89999999999766422 112222233322221110 01111111111110 112
Q ss_pred hHHHHHHHHhhhhc-CC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Ccccc
Q 001264 700 RFLRLLELLGEWYE-KG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAAR 776 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~-~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~~ 776 (1112)
+...+..++..... ++ .+||||+ ...++.|+..|...+..+..+||+|+..+|..++..|.+|..+||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 23334455544332 23 5566666 999999999999988899999999999999999999999999999999 99999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEec
Q 001264 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 777 GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
|||+|++++||++++|+++..|+|++||+||.|..|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998775555554
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.8e-37 Score=409.66 Aligned_cols=338 Identities=24% Similarity=0.313 Sum_probs=255.3
Q ss_pred CCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC---CCCCCCcEEEEccchhHHHHHHHHHH
Q 001264 486 NYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---AAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~---~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
||..|+++|.+++|.++ +++++|++||||||||++|.++|+..+...... ....+.++|||+|+++||.|++..|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 578999999999999999999999998764322 12347789999999999999999999
Q ss_pred HHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHH
Q 001264 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 562 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~i 641 (1112)
+.+..+|++|..++|+...... ...+++|+||||+++..++ ........++.+++|||||+|.+.+ ..+..+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~ll-r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIIT-RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHT-TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHH-cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9999999999999998765322 1245899999999984444 3333334578999999999997765 555555544
Q ss_pred HH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEecCccccccCceEEEEecccc---hhHH----HHHH
Q 001264 642 VQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPES---DRFL----RLLE 706 (1112)
Q Consensus 642 l~-------~~~~~~q~il~SAT~~~~~~~l~~~~l~~p-~~i~~~~~~~~~~~i~q~~~~~~~~---~k~~----~ll~ 706 (1112)
+. .+++..|+|+||||+|+ +..++.++...+ ..+.+......+..+.+.+...... ..+. .+..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 43 45778999999999985 555666554432 1111112222222344443322221 1111 2233
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCCC
Q 001264 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAKD 749 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ihg~~~ 749 (1112)
.+......+++||||+++..|+.++..|... ...++++||||+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 3444445679999999999998888877542 235788999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE----eCC------CCCHHHHHHHHccccCCCC--ccEEEEE
Q 001264 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGR--KGCAITF 817 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~~~------p~s~~~y~QriGR~gR~G~--~g~~~~~ 817 (1112)
+.+|..+...|++|.++|||||++++.|||+|.+.+||. |++ |.++.+|+||+|||||.|. .|.+|++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999995 554 5689999999999999874 6999999
Q ss_pred ecCCccCchHHH
Q 001264 818 ISEEDAKYSPDL 829 (1112)
Q Consensus 818 ~~~~d~~~~~~i 829 (1112)
++..+......+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 888776655444
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5e-39 Score=380.63 Aligned_cols=291 Identities=20% Similarity=0.222 Sum_probs=204.1
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001264 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
+++.|+++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+..+ ++ ....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----DV--KFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----CE--EEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----Ce--EEecccc-
Confidence 35789999999999999999999999988765 3678999999999999999887643 22 2211111
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhc-----CCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEE
Q 001264 580 VAQQISELKRGTEIVVCTPGRMIDILCTS-----GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVL 653 (1112)
Q Consensus 580 ~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~-----~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il 653 (1112)
-+|+||+++++++... ......+.++++|||||||+| +.+|...+..+...+ +...|+|+
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366776654332211 011234788999999999998 333333333333222 36799999
Q ss_pred EeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHH
Q 001264 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 654 ~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
||||+++.+..++.. ..++.. .....+. .....++..|.. ..+++||||+++..|+.++..
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~--------------~~~~~~~-~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIED--------------VQTDIPS-EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEE--------------EECCCCS-SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeE--------------eeeccCh-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 999998764322211 111111 0001111 111122233333 267999999999999999999
Q ss_pred HHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE-------------------eCCCCC
Q 001264 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------------------FDAPNH 794 (1112)
Q Consensus 734 L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------------------~~~p~s 794 (1112)
|...++.+..+|| .+|..++..|++|.++|||||+++++||||| +++||+ |++|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999996 899999
Q ss_pred HHHHHHHHccccCC-CCccEEEEEe---cCCccCchHHHHHHHhhccCCCCh
Q 001264 795 YEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G~~g~~~~~~---~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
..+|+||+||+||. |..|.||+|+ ++.+...+..+...+......+|.
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 99999999999997 6899999997 677888888887777666655554
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.3e-37 Score=376.89 Aligned_cols=289 Identities=21% Similarity=0.236 Sum_probs=221.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+.++|..+++.+..++++|++|+||||||++|++|++.. +.++||++|||+||.|++..+.. .++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~---~~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSK---AHG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHH---HHS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHH---HhC
Confidence 3445666666666788999999999999999999998852 56899999999999999886554 456
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001264 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
..+...+|+.. +..+++|+|+||++|+ .. ....+.++++||||||| +++++|...+..|+..++..
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 67777888864 4567899999999973 22 23567889999999995 56788888899999999877
Q ss_pred Cc--EEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHH
Q 001264 649 RQ--TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726 (1112)
Q Consensus 649 ~q--~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~ 726 (1112)
+| +|+||||++..+. ...|....+.. ..... +........ + .....+++||||+++..
T Consensus 349 ~~~llil~SAT~~~~i~------~~~p~i~~v~~---~~~~~---i~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 349 GARLVVLATATPPGSVT------VPHPNIEEVAL---SNTGE---IPFYGKAIP-------I-EAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp TCSEEEEEESSCTTCCC------CCCTTEEEEEC---BSCSS---EEETTEEEC-------G-GGSSSSEEEEECSCHHH
T ss_pred CCceEEEECCCCCcccc------cCCcceEEEee---cccch---hHHHHhhhh-------h-hhccCCcEEEEeCCHHH
Confidence 77 7788999987311 11221111100 00000 011100000 1 12256899999999999
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEE----------EeC------
Q 001264 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFD------ 790 (1112)
Q Consensus 727 ~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----------~~~------ 790 (1112)
++.++..|...++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~g 480 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFT 480 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCE
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccc
Confidence 99999999999999999999999874 5667779999999999999997 99998 677
Q ss_pred -----CCCCHHHHHHHHccccCCCCccEEEEEecCCccCc--h--HHHHHHHhh
Q 001264 791 -----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY--S--PDLVKALEL 835 (1112)
Q Consensus 791 -----~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~--~--~~i~~~l~~ 835 (1112)
+|.+.++|+||+||+|| |+.|. |+|+++.+... + ..|.+.+..
T Consensus 481 l~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 481 IETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 89999 99999887765 4 666666654
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-37 Score=383.74 Aligned_cols=306 Identities=18% Similarity=0.220 Sum_probs=216.9
Q ss_pred HHHCCCC-----CChHHHH-----HHHHHHH------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001264 482 IRKLNYE-----KPMPIQA-----QALPVIM------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 482 l~~~~~~-----~pt~iQ~-----~ai~~il------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
|..+||. .|||+|. ++||.++ .|+++|++++||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3445666 8999999 9999988 89999999999999999999999988765 3678999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001264 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||++||.|++..+..+ ++. ...+... . ....+.-+.+++.+.+...+... ..+.++++|||||
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~---~--v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDE 340 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQ---R--EHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDE 340 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC------C--CCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEES
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eeccccc---c--cCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeC
Confidence 999999999999887643 322 1111000 0 00012234444555544333321 3678999999999
Q ss_pred chhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHH
Q 001264 626 ADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
||+| +..+...+..+...+ +...|+|+||||+++.+..+... ..|+. .+ ....+ ...+..+
T Consensus 341 aH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v-------------~~~~~-~~~~~~~ 402 (673)
T 2wv9_A 341 AHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DV-------------SSEIP-DRAWSSG 402 (673)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EE-------------ECCCC-SSCCSSC
T ss_pred Cccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EE-------------eeecC-HHHHHHH
Confidence 9997 222222333333333 36789999999998653322110 11211 11 00011 1111122
Q ss_pred HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCc
Q 001264 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+..|.. ..+++||||+++..++.++..|...++.+..|||. +|..++..|++|.++|||||+++++||||| ++
T Consensus 403 l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 403 FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 333333 36799999999999999999999999999999993 789999999999999999999999999999 99
Q ss_pred EEEE--------------------eCCCCCHHHHHHHHccccCC-CCccEEEEEe---cCCccCchHHHHHHHh
Q 001264 785 LVIN--------------------FDAPNHYEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALE 834 (1112)
Q Consensus 785 ~VI~--------------------~~~p~s~~~y~QriGR~gR~-G~~g~~~~~~---~~~d~~~~~~i~~~l~ 834 (1112)
+||| |++|.+.++|+||+||+||. |+.|.||+|+ ++.+..++..+...+.
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~ 549 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKIL 549 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHH
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHh
Confidence 9998 67899999999999999999 7899999996 4666666666555443
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.2e-37 Score=366.85 Aligned_cols=293 Identities=22% Similarity=0.238 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.++++|++++||+|||++|++++... +..+||||||++|+.||+..|..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 37999999999999999999999999999999999998864 457999999999999999988873
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001264 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
++. +..++|+.. ..++|+|+||+.|...+.. ...++++|||||||++.+.+|. .++..+
T Consensus 157 ~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~----~~~~~~- 216 (472)
T 2fwr_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYV----QIAQMS- 216 (472)
T ss_dssp CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTH----HHHHTC-
T ss_pred CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHH----HHHHhc-
Confidence 777 777777764 2479999999998766532 1245899999999999887664 344444
Q ss_pred CCCcEEEEeccccHH-------------------HHHHHHHhcCCCeE--EEecCccc----------------------
Q 001264 647 PDRQTVLFSATFPRQ-------------------VEILARKVLNKPVE--IQVGGRSV---------------------- 683 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~-------------------~~~l~~~~l~~p~~--i~~~~~~~---------------------- 683 (1112)
+..++|+||||+++. +..+...++..+.. +.+.....
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 467899999998731 22222222222211 11110000
Q ss_pred --cccCceEEE---------------------EecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001264 684 --VNKDITQLV---------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 684 --~~~~i~q~~---------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
....+.+.+ .......|...|..+|.. ...+++||||++...++.++..| .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l-----~ 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF-----L 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT-----T
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh-----C
Confidence 000000000 001234466667777766 45679999999999999999987 3
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCc-c--EEEEE
Q 001264 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-G--CAITF 817 (1112)
Q Consensus 741 ~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~-g--~~~~~ 817 (1112)
+..+||+++..+|..+++.|++|.++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+. + .+|.|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999844 3 45556
Q ss_pred ecCC
Q 001264 818 ISEE 821 (1112)
Q Consensus 818 ~~~~ 821 (1112)
++..
T Consensus 451 v~~~ 454 (472)
T 2fwr_A 451 ISRG 454 (472)
T ss_dssp EECS
T ss_pred EeCC
Confidence 6643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.3e-37 Score=367.23 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=205.2
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCC
Q 001264 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg 577 (1112)
..++..++++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999988764 36789999999999999998876 3333322221
Q ss_pred CChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchh-----hhcCCCchhHHHHHHhcCCCCcEE
Q 001264 578 SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-----MFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 578 ~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-----~~~~~f~~~i~~il~~~~~~~q~i 652 (1112)
.... -..+..|.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. ..++.|+|
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 1110 1234568889999887666542 4678999999999998 55555433322 23689999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHH
Q 001264 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
+||||+|..+..+.. ...|+..... ..+ ...+..++.+|.. ..+++||||+++..|+.++.
T Consensus 148 l~SAT~~~~~~~~~~--~~~pi~~~~~--~~~-------------~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 148 FMTATPPGTTDPFPD--SNAPIHDLQD--EIP-------------DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp EECSSCTTCCCSSCC--CSSCEEEEEC--CCC-------------SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EEEcCCCcchhhhcc--CCCCeEEecc--cCC-------------cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHH
Confidence 999999875432211 1233322110 000 0111112233333 26799999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEE--------------------eCCC
Q 001264 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN--------------------FDAP 792 (1112)
Q Consensus 733 ~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------------------~~~p 792 (1112)
.|...++.+..+||. +|..++..|++|..+|||||+++++|||||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHHccccCCCC-ccEEEEEecCC--ccCchHHH
Q 001264 793 NHYEDYVHRVGRTGRAGR-KGCAITFISEE--DAKYSPDL 829 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G~-~g~~~~~~~~~--d~~~~~~i 829 (1112)
.+..+|+||+||+||.|. .|.||+|+++. +...+..+
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 999999999999999997 99999999886 54444444
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-35 Score=319.14 Aligned_cols=236 Identities=39% Similarity=0.643 Sum_probs=201.0
Q ss_pred cCceeccCCCCC--cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 453 LELKIHGKDVPK--PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 453 ~~~~v~~~~~p~--pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+.+.+.|...|. ++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346678888887 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCC----CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH
Q 001264 531 DQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 531 ~~~~~----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~ 606 (1112)
..... ....++++|||+||++|+.|++..+..++...++.+++++||.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12346899999999999999999999999888999999999999988888888899999999999999887
Q ss_pred hcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc--CC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcc
Q 001264 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682 (1112)
Q Consensus 607 ~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~--~~--~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~ 682 (1112)
... ..+.++++|||||||+|++++|...+..|+..+ +. ..|+|+||||+++.+..++..++.+|+.+.++...
T Consensus 167 ~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 167 KNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp TTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred cCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 643 467889999999999999999999999999854 33 68999999999999999999999999999888776
Q ss_pred ccccCceEE
Q 001264 683 VVNKDITQL 691 (1112)
Q Consensus 683 ~~~~~i~q~ 691 (1112)
....+|.|.
T Consensus 244 ~~~~~i~q~ 252 (253)
T 1wrb_A 244 STSDSIKQE 252 (253)
T ss_dssp ---------
T ss_pred CCcCCceec
Confidence 666666654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.2e-35 Score=343.77 Aligned_cols=269 Identities=20% Similarity=0.199 Sum_probs=194.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|+++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999976654 36789999999999999987764 4455544443211
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-CCCCcEEEEeccccHH
Q 001264 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~-~~~~q~il~SAT~~~~ 661 (1112)
.-..+..+.++|.+.+...+... ..+.++++|||||||++ +.++......+.... ++..|+|+||||+++.
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 11234567788999887666542 35788999999999996 333334444443332 5789999999999874
Q ss_pred HHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001264 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 662 ~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~ 741 (1112)
+..+... ..|+. .+. ... ....+..++.+|.. ..+++||||+++..++.++..|...++.+
T Consensus 138 ~~~~~~~--~~~i~-~~~-------------~~~-~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEAFPPS--NSPII-DEE-------------TRI-PDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCSSCCC--SSCCE-EEE-------------CCC-CSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhhhcCC--CCcee-ecc-------------ccC-CHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 3211100 11111 110 000 11112223344444 26799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcE-----------------EEEeCCCCCHHHHHHHHcc
Q 001264 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL-----------------VINFDAPNHYEDYVHRVGR 804 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~-----------------VI~~~~p~s~~~y~QriGR 804 (1112)
..+||+ +|..++..|++|.++|||||+++++||||| +.+ ||+++.|.+..+|+||+||
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR 273 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGR 273 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTT
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhc
Confidence 999997 578899999999999999999999999999 544 6788999999999999999
Q ss_pred ccCCCC-ccEEEEEe
Q 001264 805 TGRAGR-KGCAITFI 818 (1112)
Q Consensus 805 ~gR~G~-~g~~~~~~ 818 (1112)
+||.|. .|.+++|.
T Consensus 274 ~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 274 IGRNPEKLGDIYAYS 288 (431)
T ss_dssp SSCCTTCCCCEEEEC
T ss_pred cCCCCCCCCeEEEEc
Confidence 999985 45556555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=310.28 Aligned_cols=216 Identities=40% Similarity=0.729 Sum_probs=187.6
Q ss_pred cCCCCCccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-C
Q 001264 459 GKDVPKPIKTWHQ-TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-A 536 (1112)
Q Consensus 459 ~~~~p~pi~~~~~-~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~ 536 (1112)
+..+|.|+.+|.+ +++++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++.++..+... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567999999999 8999999999999999999999999999999999999999999999999999999988653211 1
Q ss_pred CCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccC
Q 001264 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 537 ~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
...++++|||+||++|+.|++..+..+. ..++.+++++||.....+...+..+++|+|+||++|.+++.... ..+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~ 166 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---CCCT
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cCcc
Confidence 2357899999999999999999999986 45889999999998888888888999999999999999886543 4678
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
++++|||||||+|++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999987753
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.3e-34 Score=351.61 Aligned_cols=280 Identities=20% Similarity=0.212 Sum_probs=207.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE
Q 001264 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
|.......+.|+++|++||||||||+.++. .+.. .+.+||++||++||.|++..+..+ |+.+.+
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~al~----~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYHAIQ----KYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHHHHH----HHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHHHHH----HHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 333344567899999999999999984333 3332 134599999999999999988764 788889
Q ss_pred EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC-CCCcEE
Q 001264 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTV 652 (1112)
Q Consensus 574 ~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~-~~~q~i 652 (1112)
++|+..... ..-....+++++|++.+ ..+..+++|||||||+|++++|...+..++..++ ...|++
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred EECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEE
Confidence 998864400 00001245666666432 2346789999999999999999999999999887 678999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHH
Q 001264 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
++|||.+ .+..++... ..++.+........ .. +.... +..+... ....||||+++..++.++.
T Consensus 276 ~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~~------l~-~~~~~------l~~l~~~--~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 276 GEPAAID-LVMELMYTT-GEEVEVRDYKRLTP------IS-VLDHA------LESLDNL--RPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ECGGGHH-HHHHHHHHH-TCCEEEEECCCSSC------EE-ECSSC------CCSGGGC--CTTEEEECSSHHHHHHHHH
T ss_pred eccchHH-HHHHHHHhc-CCceEEEEeeecch------HH-HHHHH------HHHHHhc--CCCCEEEEcCHHHHHHHHH
Confidence 9999963 344444433 34443322111100 00 00000 0111111 2345888999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCCcEEEEeCC--------------CCCHH
Q 001264 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDA--------------PNHYE 796 (1112)
Q Consensus 733 ~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~~~--------------p~s~~ 796 (1112)
.|...++.|..+||+|++.+|..++..|++ |.++|||||+++++|||| ++++||++++ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 889999999999999999 9999999999 78999
Q ss_pred HHHHHHccccCCCCc---cEEEEEecC
Q 001264 797 DYVHRVGRTGRAGRK---GCAITFISE 820 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~---g~~~~~~~~ 820 (1112)
+|+||+|||||.|.. |.|++|+..
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999999999999964 777765543
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=306.64 Aligned_cols=210 Identities=40% Similarity=0.651 Sum_probs=193.6
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 4567899999999999999999999999999999999999999999999999999999999999988764 23678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001264 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++..+++.+.+++||.....+...+..+++|+|+||++|.+++.... ...+..+++||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lV 191 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLV 191 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEE
Confidence 9999999999999999999999989999999999999888888888899999999999999887532 24578899999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
|||||+|++++|...+..++..+++++|+|+||||++..+..++..++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999987653
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=318.42 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=187.5
Q ss_pred ceeccCCCCC---cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 455 LKIHGKDVPK---PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 455 ~~v~~~~~p~---pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+.+.+.+.+. ++.+|.+++|++.+++.|..+||..|||+|.++||.++.| +|+|++++||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3444444443 4678999999999999999999999999999999999998 9999999999999999999999987
Q ss_pred hcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhc
Q 001264 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608 (1112)
Q Consensus 530 ~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~ 608 (1112)
... ..++++|||+||++||.|++..+..++..+ ++.+.+++||....... ..+++||||||++|++++...
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 543 357899999999999999999999998765 68888888887653322 456899999999999998643
Q ss_pred CCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 609 GGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 609 ~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
....+.++.+|||||||+|++ ++|...+..|+..+++.+|+|+||||+|..+..++..++.+|+.|.+.
T Consensus 229 --~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 --KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp --CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred --CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 235688999999999999998 789999999999999999999999999999999999999999988764
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=309.06 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=200.1
Q ss_pred HHHHHHhhcCceeccCCCCCcccccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001264 445 EVSAYRKQLELKIHGKDVPKPIKTWHQT----GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~v~~~~~p~pi~~~~~~----~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
++..+++...+.+.|..+|.|+.+|.++ +|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH-HHHhcCCeEEEeCch
Q 001264 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI-SELKRGTEIVVCTPG 599 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~g~~IiV~Tp~ 599 (1112)
|++|++..+... ...++++|||+||++|+.|++..+..++...++.+.+++|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 235789999999999999999999999988898888877765333221 122346899999999
Q ss_pred HHHHHHHhcCCCccccCCceEEEeccchhhhc---CCCchhHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001264 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFD---MGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~---~~f~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~l~~p~~ 675 (1112)
+|.+++.... ....+.++.+|||||||+|++ .+|...+..++..+ .+..|+++||||+|..+..++..++.+|+.
T Consensus 159 ~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 159 RLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999887643 235688999999999999998 57888898888776 457899999999999999999999999999
Q ss_pred EEecCc
Q 001264 676 IQVGGR 681 (1112)
Q Consensus 676 i~~~~~ 681 (1112)
+.++..
T Consensus 238 i~~~~~ 243 (245)
T 3dkp_A 238 VSIGAR 243 (245)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 988754
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.7e-34 Score=350.31 Aligned_cols=308 Identities=16% Similarity=0.149 Sum_probs=192.2
Q ss_pred CCChHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCCCCCCcEEEEccchhHHHHHH-HHH
Q 001264 488 EKPMPIQAQALPVIMS----G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPP-VAAGDGPVGLIMAPTRELVQQIH-SDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~-~~~~~~~~~LIl~PtreLa~Q~~-~~~ 560 (1112)
..|+|+|.++|+.++. | +++|++++||||||++++..+...+..... .....++++||||||++|+.||+ ..+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999886 4 568999999999999976655554443211 11124789999999999999998 666
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CCccccCCceEEEeccchhhhcCCCchhHH
Q 001264 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~~~f~~~i~ 639 (1112)
..| +..+..+.++. +..+.+|+|+||++|...+.... .....+..+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 33444444332 33568999999999987653211 112345678999999999987643 24556
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCcc----c-cccCceEE-----------------------
Q 001264 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS----V-VNKDITQL----------------------- 691 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~----~-~~~~i~q~----------------------- 691 (1112)
.++..++ ..++|+||||+......-...+++.++........ . ....+...
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6776664 46899999998754333333344444322100000 0 00000000
Q ss_pred ---EEeccc-------chhHHHHHH----HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------CeeeecCCCC
Q 001264 692 ---VEVRPE-------SDRFLRLLE----LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY--------PCLSLHGAKD 749 (1112)
Q Consensus 692 ---~~~~~~-------~~k~~~ll~----~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~--------~~~~ihg~~~ 749 (1112)
...... ..+...++. .+......+++||||+++..|+.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000 011222222 233333357999999999999999999987543 2778999986
Q ss_pred HHHHHHHHHHhhcCCcc---EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCC
Q 001264 750 QTDRESTISDFKSNVCN---LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~---VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~ 810 (1112)
. +|..+++.|++|... |||||+++++|||+|++++||+|++|+++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 89999999999999999999999999999999999999999874
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.7e-33 Score=305.94 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=179.4
Q ss_pred ccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC
Q 001264 458 HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA 537 (1112)
Q Consensus 458 ~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~ 537 (1112)
...+.|.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 344567889999999999999999999999999999999999999999999999999999999999999886542
Q ss_pred CCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccC
Q 001264 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 538 ~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
..++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+ ++|+|+||++|.+++.... ..+.
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~ 172 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPK 172 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCST
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcc
Confidence 24678999999999999999999999988899999999999888777777666 8999999999999886532 4678
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
.+.+|||||||+|++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.++
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999887653
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=299.93 Aligned_cols=229 Identities=33% Similarity=0.502 Sum_probs=198.1
Q ss_pred HHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001264 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 443 ~~~~~~~r~~~~~~v~~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
.+++..++..+.. ..+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4456666665542 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH
Q 001264 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI 602 (1112)
Q Consensus 523 lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~ 602 (1112)
+|++..+..... ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998865321 1234789999999999999999999999988889999999998887776665 46999999999999
Q ss_pred HHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecC
Q 001264 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 603 ~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 680 (1112)
+++.... ...+.++++|||||||+|++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.++.
T Consensus 159 ~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 159 QHMDETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHhcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9886542 245788999999999999999999999999999999999999999999999999999999999887653
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.8e-33 Score=299.68 Aligned_cols=211 Identities=30% Similarity=0.471 Sum_probs=184.2
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001264 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
+...|.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567888999999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCC
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
.++++|||+||++|+.|++..+..++... ++.+.+++||.....+...+. +++|+|+||++|.+++.... ..+.+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~---~~~~~ 166 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDY---LNPGS 166 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTS---SCGGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCC---ccccc
Confidence 46899999999999999999999998765 889999999998877766554 69999999999999886532 46788
Q ss_pred ceEEEeccchhhhcCC-CchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 618 VTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 618 i~~vViDEah~~~~~~-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
+++|||||||++++++ |...+..|+..++...|+|+||||+|..+..++..++++|+.+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999998 999999999999989999999999999999999999999987654
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.8e-33 Score=359.08 Aligned_cols=357 Identities=15% Similarity=0.152 Sum_probs=243.5
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|+|+|.+++..++.. ..+|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 478999999999999998888776554 234479999999 99999999997654
Q ss_pred hcCceEEEEeCCCChHHHHHH---HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCch-hHHHH
Q 001264 566 VMGVRCVPVYGGSGVAQQISE---LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~---l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~-~i~~i 641 (1112)
++.+..+.|+. ....... .....+|+|+|++.|...... ........+++|||||||++.+.+... ....+
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 56655544332 2221111 112468999999987432100 011234578999999999997655321 22233
Q ss_pred HHhc-CCCCcEEEEeccccH----HHHHHHHHhcCC--------------------------------------------
Q 001264 642 VQNI-RPDRQTVLFSATFPR----QVEILARKVLNK-------------------------------------------- 672 (1112)
Q Consensus 642 l~~~-~~~~q~il~SAT~~~----~~~~l~~~~l~~-------------------------------------------- 672 (1112)
+..+ ....+++++|||+.. .+..+...+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 345679999999742 011111100000
Q ss_pred ------------------------------------CeEEEecC---ccccccCceEEE---------------------
Q 001264 673 ------------------------------------PVEIQVGG---RSVVNKDITQLV--------------------- 692 (1112)
Q Consensus 673 ------------------------------------p~~i~~~~---~~~~~~~i~q~~--------------------- 692 (1112)
.+.+.... ..++...+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 00000000 000000000000
Q ss_pred ------------------------EecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCC
Q 001264 693 ------------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGA 747 (1112)
Q Consensus 693 ------------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-~~~~~~~ihg~ 747 (1112)
.......|...|..+|.. ...+++||||+++..++.|+..|.. .|+.+..+||+
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 112334577778887766 4577999999999999999999995 59999999999
Q ss_pred CCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCc
Q 001264 748 KDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
|++.+|..++..|++|. ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.|.|++++.......
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999998777765555555
Q ss_pred hHHHHHHHhhc----cCCCChhHHHHHHHHHHHHhhhh
Q 001264 826 SPDLVKALELS----EQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 826 ~~~i~~~l~~~----~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
...|.+.+... ...+|. ...+...+...+....
T Consensus 618 ee~i~~~~~~k~~~~~~~~~~-~~~i~~~~~~~l~~~l 654 (968)
T 3dmq_A 618 QSVLVRWYHEGLDAFEHTCPT-GRTIYDSVYNDLINYL 654 (968)
T ss_dssp HHHHHHHHHHTTCCSSSCCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceecCCCC-HHHHHHHHHHHHHHHH
Confidence 56666666322 233443 3445555555554444
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-33 Score=298.58 Aligned_cols=208 Identities=31% Similarity=0.515 Sum_probs=185.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999887542 2468899
Q ss_pred EEccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
||+||++|+.|++..+..++... ++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+..+++
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~ 153 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHI 153 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC---CCcCcceE
Confidence 99999999999999999998776 788999999987766655566678999999999999886532 46788999
Q ss_pred EEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecC
Q 001264 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~ 680 (1112)
|||||||++++++|...+..++..+++..|+|+||||+|..+..++..++.+|..+.+..
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999999998876543
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=7.1e-32 Score=319.95 Aligned_cols=321 Identities=21% Similarity=0.227 Sum_probs=238.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+.-++..|+ |..+.||+|||+++.+|++...+. |..|.||+||..||.|-+.++..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 564 69999999999998887 889999999999999999866443 6679999999999999999999999
Q ss_pred hhcCceEEEEeCC--------------------------------------------------CChHHHHHHHhcCCeEE
Q 001264 565 KVMGVRCVPVYGG--------------------------------------------------SGVAQQISELKRGTEIV 594 (1112)
Q Consensus 565 ~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~l~~g~~Ii 594 (1112)
..+|+.+++++.. .+..+..... .|+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 9999999999882 1111112222 38999
Q ss_pred EeCchHHH-HHHHhcC---CCccccCCceEEEeccchhhh-cCC--------------------------------Cc--
Q 001264 595 VCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG--------------------------------FE-- 635 (1112)
Q Consensus 595 V~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~~--------------------------------f~-- 635 (1112)
++|..-|. |+|..+- ........+.|.||||+|.++ |.. |.
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998873 4554321 111224678899999999653 100 00
Q ss_pred ----------hh---HHHH---------------------HHh---cCCC------------------------------
Q 001264 636 ----------PQ---ITRI---------------------VQN---IRPD------------------------------ 648 (1112)
Q Consensus 636 ----------~~---i~~i---------------------l~~---~~~~------------------------------ 648 (1112)
.. +..+ +.. +..+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 00 0000 000 0000
Q ss_pred -------------------------------CcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceE-EEEecc
Q 001264 649 -------------------------------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP 696 (1112)
Q Consensus 649 -------------------------------~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q-~~~~~~ 696 (1112)
..+.+||+|.......|...| +-.+ +.++. ..+...+.+ .+.+..
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~v-v~IPt-nkp~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GMEV-VVIPT-HKPMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCCE-EECCC-SSCCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCeE-EEECC-CCCcceeecCcEEEec
Confidence 248999999988777665555 3333 23322 222222222 234566
Q ss_pred cchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001264 697 ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...|+..++..|.... .+.++||||+|+..++.|+..|...|+++..|||++.+.++..+...|+.| .|||||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 7789999999888754 456999999999999999999999999999999996655555555556555 6999999999
Q ss_pred ccCCCC--------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 776 RGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 776 ~GlDi~--------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
||+||+ +..+||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 777999999999999999999999999999999999998874
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-32 Score=296.33 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=183.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001264 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
...|+++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467889999999999999999999999999999999999999999999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCce
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
++++|||+||++|+.|++..+..++...++.+.+++||.....+...+.. ++|+|+||++|.+++... ...+.+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR---RFRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC---CcchhhCc
Confidence 67999999999999999999999998889999999999887777666554 899999999999888663 24678899
Q ss_pred EEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCc
Q 001264 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 620 ~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~ 681 (1112)
+|||||||++++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.+...
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988776543
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.7e-32 Score=289.58 Aligned_cols=202 Identities=31% Similarity=0.593 Sum_probs=185.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+... ..++++|||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886542 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001264 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+||++|+.|++..+..++..+ ++.+.+++||.....+...+..+++|+|+||++|..++.... ..+.++.+|||||
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~lViDE 154 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLDE 154 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC---cCcccCCEEEEEC
Confidence 999999999999999998877 789999999999988888888889999999999998886532 4678899999999
Q ss_pred chhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001264 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 676 (1112)
||+|++.+|...+..++..+++..|+|+||||+|..+..++..++.+|+.+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999899999999999999999999999999765
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-31 Score=285.16 Aligned_cols=204 Identities=41% Similarity=0.693 Sum_probs=185.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999998764321 23578999999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++|+.|++..+..++.. +.+.+++||.....+...+..+++|+|+||++|.+++.... ..+.++++|||||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV---LDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS---SCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC---cchhhceEEEEEChh
Confidence 9999999999999998764 67888999998888888888889999999999999887632 467889999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
++++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999987765
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=298.58 Aligned_cols=205 Identities=33% Similarity=0.521 Sum_probs=183.0
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|..++ |++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566666 9999999999999999999999999999999999999999999999999999998876432 123478899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++||.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|.+++.... ...+.++.+||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lViD 208 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVID 208 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEEc
Confidence 99999999999999999999999999999999999998888888899999999999999887643 2457889999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001264 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~ 674 (1112)
|||+|++++|...+..|+..++..+|+|+||||+|+.+..+++.++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999987653
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-31 Score=323.40 Aligned_cols=311 Identities=18% Similarity=0.209 Sum_probs=218.0
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.++++++. .+.++|++++||+|||++++..+...... +....+|||||+ .|+.||..++.+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 368999999999874 57899999999999999976655544322 234579999995 6889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHH
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~ 643 (1112)
+. ++.+..++|+... ......+|+|+||+.|..... .....+++|||||||++.+.+ ..+...+.
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 75 3455555555422 112357999999999865432 233468999999999997654 34555666
Q ss_pred hcCCCCcEEEEeccccHH----HHHHHHHhc--------------------------------CCCeEEEecCcc-----
Q 001264 644 NIRPDRQTVLFSATFPRQ----VEILARKVL--------------------------------NKPVEIQVGGRS----- 682 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~----~~~l~~~~l--------------------------------~~p~~i~~~~~~----- 682 (1112)
.++ ..+.+++|||+..+ +..++..+. -.|+.+......
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 663 46789999998431 111111110 012221111000
Q ss_pred ccccCceEEEEec--------------------------------------------------------ccchhHHHHHH
Q 001264 683 VVNKDITQLVEVR--------------------------------------------------------PESDRFLRLLE 706 (1112)
Q Consensus 683 ~~~~~i~q~~~~~--------------------------------------------------------~~~~k~~~ll~ 706 (1112)
..+......+.+. ....|+..+..
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 0011111111111 11345556666
Q ss_pred HHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEecCcccccCCCCC
Q 001264 707 LLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIATSVAARGLDVKE 782 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVaT~v~~~GlDi~~ 782 (1112)
+|.... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ... |||+|+++++|||++.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 666654 3569999999999999999999885 99999999999999999999999988 454 8999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHccccCCCCccEE--EEEecCC
Q 001264 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 783 v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~--~~~~~~~ 821 (1112)
+++||+|++|+++..|+|++||++|.|+.+.+ |.|++..
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999987665 4455543
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=1.3e-31 Score=287.59 Aligned_cols=207 Identities=28% Similarity=0.509 Sum_probs=182.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+....+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 4455679999999999999999999999999999999999999999999999999999999999886542 23568
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001264 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+|||+||++|+.||+..+..++..+ ++.+.+++||.....+...+.. .++|+|+||++|..++.... ..+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcccCCE
Confidence 9999999999999999999998776 7899999999988887777765 46999999999999886532 46788999
Q ss_pred EEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001264 621 LVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 621 vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~ 677 (1112)
|||||||++++ .+|...+..++..+++..|+|+||||+|..+..++..++.+|+.+.
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999987 5788899999999988999999999999999999999999998765
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=4.1e-30 Score=327.86 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=228.7
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHHc--------------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001264 476 SKIMETIRKLN-------YEKPMPIQAQALPVIMS--------------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 476 ~~l~~~l~~~~-------~~~pt~iQ~~ai~~il~--------------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
..++..|..+- ...|+|+|..|++.++. ++++|++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555432 23599999999999875 378999999999999997 6666554431
Q ss_pred CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCCcc
Q 001264 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 535 ~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~g~~IiV~Tp~~L~~~l~~~~~~~~ 613 (1112)
+..+++|||||+++|+.||...+..|+.. .+.++.+.......+. .+++|+|+||++|..++.... ...
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~ 397 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLP 397 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chh
Confidence 23468999999999999999999887642 2356666666666664 468999999999998876532 122
Q ss_pred ccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHH----HHHHHhcCCC----------------
Q 001264 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE----ILARKVLNKP---------------- 673 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~----~l~~~~l~~p---------------- 673 (1112)
.+..+.+|||||||++... ..+..|+..++ ..++|+||||+..... .....+++.+
T Consensus 398 ~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~ 473 (1038)
T 2w00_A 398 VYNQQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL 473 (1038)
T ss_dssp GGGSCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC
T ss_pred ccccccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC
Confidence 4567899999999997642 33455666664 5799999999874321 1122222332
Q ss_pred -eEEEecCcccc------c-c-----CceEEEEecccchhHHHHHHHHhhhh-----------cCCeEEEEeCCHHHHHH
Q 001264 674 -VEIQVGGRSVV------N-K-----DITQLVEVRPESDRFLRLLELLGEWY-----------EKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 674 -~~i~~~~~~~~------~-~-----~i~q~~~~~~~~~k~~~ll~~l~~~~-----------~~~~vLIF~~s~~~~~~ 729 (1112)
+.+........ . . .+.+. .......++..++..|...+ .+.++||||+++..|..
T Consensus 474 p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 474 KFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 22211110000 0 0 00000 00011223334444332211 23589999999999999
Q ss_pred HHHHHHhcC------------CCe-eeecCC----------C----------CH--------------------------
Q 001264 730 LFRDLLKHG------------YPC-LSLHGA----------K----------DQ-------------------------- 750 (1112)
Q Consensus 730 l~~~L~~~~------------~~~-~~ihg~----------~----------~~-------------------------- 750 (1112)
++..|...+ +.+ +++||+ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999998754 555 455642 2 22
Q ss_pred ---HHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCc----cEEEEEecCCcc
Q 001264 751 ---TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 751 ---~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~----g~~~~~~~~~d~ 823 (1112)
..|..++..|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~---- 707 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD---- 707 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC----
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc----
Confidence 247889999999999999999999999999999 678899999999999999999998753 77777775
Q ss_pred CchHHHHHHHhh
Q 001264 824 KYSPDLVKALEL 835 (1112)
Q Consensus 824 ~~~~~i~~~l~~ 835 (1112)
....+..++..
T Consensus 708 -~~~~l~~Al~~ 718 (1038)
T 2w00_A 708 -LERSTIDAITL 718 (1038)
T ss_dssp -CHHHHHHHHHH
T ss_pred -cHHHHHHHHHH
Confidence 34455555543
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=321.32 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=227.0
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.+++.+++ .+.++|++.+||+|||++++..+...+... .....+||||| ..|+.||..+|.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 478999999999877 789999999999999998777766554332 12345799999 67889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHH------------hcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISEL------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l------------~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+. ++.+++.+|+......+... ...++|+|+||+.|...... +....+.+|||||||++.+
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGGGGCC
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhhhhcC
Confidence 75 45666666665444443332 12468999999998764422 1223588999999999865
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEecccc----HHHHHHHHHhcCCC-----------------------------eEEEe
Q 001264 632 MGFEPQITRIVQNIRPDRQTVLFSATFP----RQVEILARKVLNKP-----------------------------VEIQV 678 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SAT~~----~~~~~l~~~~l~~p-----------------------------~~i~~ 678 (1112)
. ...+...+..++ ....+++|||+- ..+..++..+.... +.+..
T Consensus 382 ~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 382 A--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp S--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred c--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 3 345566666663 345789999972 22333333222111 11110
Q ss_pred cCccc---cccCceEEEEe-------------------------------------------------------------
Q 001264 679 GGRSV---VNKDITQLVEV------------------------------------------------------------- 694 (1112)
Q Consensus 679 ~~~~~---~~~~i~q~~~~------------------------------------------------------------- 694 (1112)
....+ .+......+.+
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 00000 00000000000
Q ss_pred -------------cccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh
Q 001264 695 -------------RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760 (1112)
Q Consensus 695 -------------~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F 760 (1112)
...+.|+..|..+|..+.. +.++||||.....++.|..+|...|+.+..|||+++..+|..++..|
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 0123456666667766544 45999999999999999999999999999999999999999999999
Q ss_pred hcCCc---cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEE--EEEecCC
Q 001264 761 KSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 761 ~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~--~~~~~~~ 821 (1112)
+++.. .+||+|.+++.|||++.+++||+||+|+++..++|++||++|.|+...| |.|++..
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 98654 5999999999999999999999999999999999999999999986554 4466654
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.2e-29 Score=309.31 Aligned_cols=322 Identities=17% Similarity=0.215 Sum_probs=222.9
Q ss_pred CChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001264 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+|+|.+++.++. .+..+|+..+||+|||++++..+...+...+. ..+....+|||||+ .|+.||..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999985 34678999999999999988777766554322 12223468999997 889999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHH--HHHHHhc------CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 560 IRKFAKVMGVRCVPVYGGSGVAQ--QISELKR------GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~--~~~~l~~------g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+.+|+.. .+.++.++||..... .+..+.. .++|+|+|++.|..... ......+++|||||||++.+
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----HhhcCCccEEEEECceecCC
Confidence 9999865 566777777764321 2222221 36899999998865432 12335688999999999875
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEeccccHH----HH---------------HHHHHhc----------------------
Q 001264 632 MGFEPQITRIVQNIRPDRQTVLFSATFPRQ----VE---------------ILARKVL---------------------- 670 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SAT~~~~----~~---------------~l~~~~l---------------------- 670 (1112)
.. ......+..++ ....|++|||+-.+ +. .|...|.
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 43 34455555564 45689999996321 00 0100000
Q ss_pred -------CCCeEEEecCcc---ccccCceEEEEe----------------------------------------------
Q 001264 671 -------NKPVEIQVGGRS---VVNKDITQLVEV---------------------------------------------- 694 (1112)
Q Consensus 671 -------~~p~~i~~~~~~---~~~~~i~q~~~~---------------------------------------------- 694 (1112)
-.|+.+.-.... ..+..+.+.+.+
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 000000000000 000000111100
Q ss_pred -------------------------------cccchhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001264 695 -------------------------------RPESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 695 -------------------------------~~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~ 741 (1112)
...+.|+..+..++.... ...++||||++...++.|...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 011234444444444332 35799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCc---cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccE--EEE
Q 001264 742 LSLHGAKDQTDRESTISDFKSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~--~~~ 816 (1112)
..|||++++.+|..+++.|++|.. .+||+|.++++|||++++++||+||+||++..|.|++||++|.|+... +|.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 999999999999999999999865 489999999999999999999999999999999999999999998764 445
Q ss_pred EecCC
Q 001264 817 FISEE 821 (1112)
Q Consensus 817 ~~~~~ 821 (1112)
|++..
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 56543
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.1e-27 Score=284.03 Aligned_cols=322 Identities=22% Similarity=0.269 Sum_probs=235.0
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|+ .||++|..++|.++.|+ |+.+.||+|||++|++|++..... |..|+||+||++||.|++.++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3898 99999999999999998 999999999999999999755442 557999999999999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CCccccC---CceEEEeccchhhh-cCCCc
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLR---RVTYLVMDEADRMF-DMGFE 635 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L-~~~l~~~~---~~~~~l~---~i~~vViDEah~~~-~~~f~ 635 (1112)
+..+|+++.+++||.+... ..+..+++|+|+||++| .++|..+- .....++ .+.++||||||.|+ +.+..
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeart 221 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEART 221 (997)
T ss_dssp HHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTS
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCC
Confidence 9999999999999988543 34445699999999999 88887642 1123567 89999999999886 32211
Q ss_pred ---------------hhHHHHHHhcCCC----------------------------------------------------
Q 001264 636 ---------------PQITRIVQNIRPD---------------------------------------------------- 648 (1112)
Q Consensus 636 ---------------~~i~~il~~~~~~---------------------------------------------------- 648 (1112)
..+..++..++.+
T Consensus 222 PLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~ 301 (997)
T 2ipc_A 222 PLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELA 301 (997)
T ss_dssp CEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHH
T ss_pred CeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHH
Confidence 0111222211110
Q ss_pred -----------------------------------------------------------------------------CcE
Q 001264 649 -----------------------------------------------------------------------------RQT 651 (1112)
Q Consensus 649 -----------------------------------------------------------------------------~q~ 651 (1112)
..+
T Consensus 302 ~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kL 381 (997)
T 2ipc_A 302 HMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKR 381 (997)
T ss_dssp HHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHh
Confidence 126
Q ss_pred EEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHH
Q 001264 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDAL 730 (1112)
Q Consensus 652 il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l 730 (1112)
.+||+|.......|...| +-.+.+.+...+...... ...++.....|+..++..+...+. +.+|||+|.|++..+.|
T Consensus 382 sGMTGTA~tE~~Ef~~iY-~l~Vv~IPTn~p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 382 AGMTGTAKTEEKEFQEIY-GMDVVVVPTNRPVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEEESSCGGGHHHHHHHH-CCCEEECCCSSCCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred eecCCCchHHHHHHHHHh-CCCEEEcCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 677777766555554443 333322222222222222 223445667889998888877654 45999999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 001264 731 FRDLL--------------------------------------------------------------------------- 735 (1112)
Q Consensus 731 ~~~L~--------------------------------------------------------------------------- 735 (1112)
+..|.
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCC-------------------c----------
Q 001264 736 -KHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKEL-------------------E---------- 784 (1112)
Q Consensus 736 -~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v-------------------~---------- 784 (1112)
..|++.-+|.......+ ..|+. +.|. ..|-|||++|+||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~E-AeIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHARE-AEIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHH-HHHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHH-HHHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 45677777776543222 23332 2443 4699999999999998632 1
Q ss_pred ---------------------------------------------EEEEeCCCCCHHHHHHHHccccCCCCccEEEEEec
Q 001264 785 ---------------------------------------------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 785 ---------------------------------------------~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
+||--..+.|--.-.|-.||+||-|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78877888888888999999999999999998888
Q ss_pred CCcc
Q 001264 820 EEDA 823 (1112)
Q Consensus 820 ~~d~ 823 (1112)
-.|.
T Consensus 697 LeDd 700 (997)
T 2ipc_A 697 FDDD 700 (997)
T ss_dssp SSSH
T ss_pred CChH
Confidence 6653
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3.7e-27 Score=291.55 Aligned_cols=176 Identities=23% Similarity=0.304 Sum_probs=137.6
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHH
Q 001264 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~ 725 (1112)
...|+|+||||++...... ....+...+....... ..+.+.+...++..++..|..+. .+.++||||+++.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~----p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLD----PLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCC----CEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCC----CeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4678999999998653211 1111111111111111 11233444556677777776654 4569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC-----CCCHHHHHH
Q 001264 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (1112)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~-----p~s~~~y~Q 800 (1112)
.++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|||+|++++||+|+. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHccccCCCCccEEEEEecCCccCchHHHHH
Q 001264 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 801 riGR~gR~G~~g~~~~~~~~~d~~~~~~i~~ 831 (1112)
|+||+||.| .|.|++|+++.+..+...|.+
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999996 899999999876655444433
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=248.55 Aligned_cols=181 Identities=35% Similarity=0.517 Sum_probs=148.4
Q ss_pred HHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001264 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 666 ~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ih 745 (1112)
...++.+|+.|.++.......+|.|.+..++...|+..|+.+|... .+++||||+++..++.++..|...|+.+..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467889999998888888889999999999999999999988763 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC-ccC
Q 001264 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAK 824 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~ 824 (1112)
|+|++.+|..+++.|++|...|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 677
Q ss_pred chHHHHHHHhhccCCCChhHHHHH
Q 001264 825 YSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 825 ~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
++..|.+.|....+.+|..|..+.
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 888999999999999999876543
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=8.1e-27 Score=288.35 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=152.8
Q ss_pred CceEEEeccchhhh------------------cCCCc-hhH-----HHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC
Q 001264 617 RVTYLVMDEADRMF------------------DMGFE-PQI-----TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK 672 (1112)
Q Consensus 617 ~i~~vViDEah~~~------------------~~~f~-~~i-----~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~ 672 (1112)
.-.+|||||+|+|+ ++||. +.. ..+-..++...|+++||||++...... ...
T Consensus 331 ~~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~ 406 (661)
T 2d7d_A 331 DDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEH----TDE 406 (661)
T ss_dssp SSCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHHHHH----CSS
T ss_pred cCcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhHHHh----hhC
Confidence 44599999999976 33332 110 001111224689999999998653222 122
Q ss_pred CeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001264 673 PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 673 p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~ 751 (1112)
.+...+........ .+.+.+...++..++..|..+. .+.++||||+++..++.|+..|...|+.+..+||++++.
T Consensus 407 ~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~ 482 (661)
T 2d7d_A 407 MVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTL 482 (661)
T ss_dssp CEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHH
T ss_pred eeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHH
Confidence 22221111111111 1233444556677777776655 456999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC-----CCCHHHHHHHHccccCCCCccEEEEEecCCccCch
Q 001264 752 DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~-----p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~ 826 (1112)
+|..++..|++|.+.|||||+++++|||+|++++||+++. |.+...|+||+||+||. ..|.|++|+++.+..+.
T Consensus 483 ~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~ 561 (661)
T 2d7d_A 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSME 561 (661)
T ss_dssp HHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHH
Confidence 9999999999999999999999999999999999999997 99999999999999998 68999999998766554
Q ss_pred HHHH
Q 001264 827 PDLV 830 (1112)
Q Consensus 827 ~~i~ 830 (1112)
..|.
T Consensus 562 ~~i~ 565 (661)
T 2d7d_A 562 IAIN 565 (661)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=239.02 Aligned_cols=168 Identities=40% Similarity=0.626 Sum_probs=143.3
Q ss_pred cccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh
Q 001264 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~ 761 (1112)
.....+|.|.+..++...|+..|+.+|......+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999987656789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001264 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|...|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 001264 842 DDLKALAD 849 (1112)
Q Consensus 842 ~~l~~~~~ 849 (1112)
.+|..++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887763
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=8.9e-25 Score=222.64 Aligned_cols=152 Identities=36% Similarity=0.621 Sum_probs=141.6
Q ss_pred cccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001264 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
...++.|.+..++...|+..|..+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456889999898899999999988764 567999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001264 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
...|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..|.+.+...
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988888888877543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=8.7e-25 Score=224.64 Aligned_cols=158 Identities=33% Similarity=0.603 Sum_probs=142.6
Q ss_pred cCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001264 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 686 ~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
..+.|.+..++...|+..|+.+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..+++.|++|..
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46888888888899999999988764 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChhH
Q 001264 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +...+..|.+.+......+|..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999975 55677788888877666777653
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=221.94 Aligned_cols=155 Identities=30% Similarity=0.512 Sum_probs=136.0
Q ss_pred cccCceEEEEecccch-hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001264 684 VNKDITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
...++.|.+..++... |+..|..++... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3457888888877655 888888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCC------CCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001264 763 NVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p------~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|...|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++.+...+..|.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999998887777887777654
Q ss_pred cCC
Q 001264 837 EQV 839 (1112)
Q Consensus 837 ~~~ 839 (1112)
...
T Consensus 163 ~~~ 165 (175)
T 2rb4_A 163 IKQ 165 (175)
T ss_dssp CEE
T ss_pred ccc
Confidence 433
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=7e-25 Score=223.91 Aligned_cols=157 Identities=31% Similarity=0.562 Sum_probs=138.2
Q ss_pred CceEEEEecccch-hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001264 687 DITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+..++... |+..|..++... ..+++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5778777777666 888888888764 56899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001264 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 9999999999999999999999999999999999999999999999999999999998888888888877666666543
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2e-23 Score=221.99 Aligned_cols=148 Identities=30% Similarity=0.522 Sum_probs=134.0
Q ss_pred eEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEE
Q 001264 689 TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768 (1112)
Q Consensus 689 ~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VL 768 (1112)
.+.....+...|+..|..++.. ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 3445556778899999888875 457899999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001264 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|||+++++|||||++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999999999999888888888876543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=5.7e-23 Score=228.89 Aligned_cols=149 Identities=30% Similarity=0.516 Sum_probs=134.0
Q ss_pred ceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001264 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.+.+..+....|+..|..++... ..+++||||+++..++.|+..|...|+.+..+||+|++.+|..++..|++|.++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 567777788889999999888764 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001264 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||||+++++|||||++++||+|++|++...|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999888888888876543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=6.1e-24 Score=218.03 Aligned_cols=148 Identities=32% Similarity=0.483 Sum_probs=134.2
Q ss_pred CceEEEEeccc-chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001264 687 DITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+..++. ..|+..|..++.. ...+++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666666 7788888887765 345799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001264 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999999999999999999999999999999988888777776644
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=214.47 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=123.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH-HHHHHHHH
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ-IHSDIRKF 563 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q-~~~~~~~~ 563 (1112)
.....|+|+|.++++.++.++++|++++||+|||++|+++++..+..... ...++++||||||++|+.| |...+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44458999999999999999999999999999999999999987654211 1236789999999999999 77888887
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---CccccCCceEEEeccchhhhcCCCchhHHH
Q 001264 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~~f~~~i~~ 640 (1112)
+.. ++.+..++|+.........+..+++|+|+||+.|..++..... ....+..+++|||||||++.+.++...+..
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 664 7788888888765544444455689999999999988865321 113567899999999999987776666543
Q ss_pred HHHhcC--------------CCCcEEEEecc
Q 001264 641 IVQNIR--------------PDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~--------------~~~q~il~SAT 657 (1112)
.+.... +..++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 67899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=3.5e-21 Score=233.45 Aligned_cols=303 Identities=19% Similarity=0.218 Sum_probs=169.8
Q ss_pred CCCCCChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001264 485 LNYEKPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.|| .|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+..++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 466 799999998654 4688999999999999999999999864 568999999999999999877
Q ss_pred HHHhhhcCceEEEEeCCCCh--------H-H-----------------------H---------------HHHHhcCCeE
Q 001264 561 RKFAKVMGVRCVPVYGGSGV--------A-Q-----------------------Q---------------ISELKRGTEI 593 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~--------~-~-----------------------~---------------~~~l~~g~~I 593 (1112)
..+ +++++.+.|.... . . . ...+..+++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 663 5555544432210 0 0 0 0111235799
Q ss_pred EEeCchHHHHHHHhcCCC----ccccCCceEEEeccchhhhcCC--Cc-----h--------------------------
Q 001264 594 VVCTPGRMIDILCTSGGK----ITNLRRVTYLVMDEADRMFDMG--FE-----P-------------------------- 636 (1112)
Q Consensus 594 iV~Tp~~L~~~l~~~~~~----~~~l~~i~~vViDEah~~~~~~--f~-----~-------------------------- 636 (1112)
||+||..|++.+...... ...+....+|||||||+|.+.. |. .
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999998755432100 0124567899999999984310 00 0
Q ss_pred --------------------------------hHHHHHHh-----------------------------------cCC--
Q 001264 637 --------------------------------QITRIVQN-----------------------------------IRP-- 647 (1112)
Q Consensus 637 --------------------------------~i~~il~~-----------------------------------~~~-- 647 (1112)
.+..++.. +.|
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 00001000 000
Q ss_pred -----------CCcEEEEeccccHHHHHHHHHhcCCCeEEEecCccccccCceEEEE---eccc-ch---hHHHHHHHHh
Q 001264 648 -----------DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE---VRPE-SD---RFLRLLELLG 709 (1112)
Q Consensus 648 -----------~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~---~~~~-~~---k~~~ll~~l~ 709 (1112)
...+|++|||+++.+. +...| ...+. ..+ ...+.+. +... .. .+..+...|.
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~-~~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVN-ESY---GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECC-CC----CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchh-hee---cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 0113777777765100 00001 00000 000 0011111 0001 11 1133444444
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE--ecCcccccCCCCC---
Q 001264 710 EWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI--ATSVAARGLDVKE--- 782 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV--aT~v~~~GlDi~~--- 782 (1112)
... .++.+||||+|...++.++..|.. +. +.++|.. ..+..+++.|+.|. .||+ ||..+++|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 332 367999999999999999988854 33 4556654 46888999999864 5777 8899999999998
Q ss_pred -CcEEEEeCCCCC-H-----------------------------HHHHHHHccccCCCCccEEEEEec
Q 001264 783 -LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 783 -v~~VI~~~~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
+.+||++++|.. + ..+.|.+||+-|....--++++++
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 899999999852 1 123589999999754433444554
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=211.08 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=133.6
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001264 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+...+.......++++|.++++.+..|++++++|+||||||++|.++++..+..... +.+..+||++||++|+.|++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHH
Confidence 333444444456789999999999999999999999999999999999887765321 23568999999999999998
Q ss_pred HHHHHHhh-hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh-hcCCCc
Q 001264 558 SDIRKFAK-VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM-FDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~-~~~~f~ 635 (1112)
..+..... ..+..+......... ....+++|+|||||+|++++.. .+.++++|||||||++ ++++|.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHH
Confidence 88766543 233333332221100 0113578999999999999864 4788999999999986 888887
Q ss_pred hhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001264 636 PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 636 ~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~ 674 (1112)
..+...+....++.|+|+||||++... ++..+.+.|+
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 544444444457899999999999876 6666666665
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=1.1e-19 Score=221.03 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=201.1
Q ss_pred CChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 489 KPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998775 4579999999999999999999999972 6789999999999999999999887
Q ss_pred hhcCceEEEEeCCCC---------------------------------hHHHH------------------HHHhcCCeE
Q 001264 565 KVMGVRCVPVYGGSG---------------------------------VAQQI------------------SELKRGTEI 593 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~---------------------------------~~~~~------------------~~l~~g~~I 593 (1112)
..++++++++.|+.. ....+ ..+..+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 777888888777432 11222 223356899
Q ss_pred EEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC----------------------------------------
Q 001264 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---------------------------------------- 633 (1112)
Q Consensus 594 iV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~---------------------------------------- 633 (1112)
||+||+.|++.+.... +..+....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 152 IALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765432 11224678999999999865 1
Q ss_pred ---------------CchhHHHH----------------------------H----------------------------
Q 001264 634 ---------------FEPQITRI----------------------------V---------------------------- 642 (1112)
Q Consensus 634 ---------------f~~~i~~i----------------------------l---------------------------- 642 (1112)
+...+..+ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000000 0
Q ss_pred HhcCCC-CcEEEEeccccHHHHHHHHHhcCC-CeEEEe----cCccccccCceEEEEec--cc------chhHHHHHHHH
Q 001264 643 QNIRPD-RQTVLFSATFPRQVEILARKVLNK-PVEIQV----GGRSVVNKDITQLVEVR--PE------SDRFLRLLELL 708 (1112)
Q Consensus 643 ~~~~~~-~q~il~SAT~~~~~~~l~~~~l~~-p~~i~~----~~~~~~~~~i~q~~~~~--~~------~~k~~~ll~~l 708 (1112)
..+... +.+|++|||+.+ ...+...+.-. +....+ -..++ ..+. ..+... +. ......+...|
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSY-ECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEE-EEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCce-EEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 001122 678999999987 44444443332 222101 01112 1221 112111 10 11234455555
Q ss_pred hhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCC---
Q 001264 709 GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVK--- 781 (1112)
Q Consensus 709 ~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~--- 781 (1112)
.... .+|.+|||++|...++.++.. .++.++.=..+++ +..+++.|+.....||+|| ..+..|||++
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 4433 368999999999999999873 3444443333455 3557778854445899998 7999999999
Q ss_pred C--CcEEEEeCCCCC---H----------------H-----------HHHHHHccccCCCCccEEEEEecC
Q 001264 782 E--LELVINFDAPNH---Y----------------E-----------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 782 ~--v~~VI~~~~p~s---~----------------~-----------~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
+ +.+||+..+|.. + . ...|.+||+-|....--++++++.
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4 889999877641 0 1 123889999998655445555543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=7.2e-21 Score=211.93 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=127.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.+.+.|++++||+|||+++++++...+... +..+||||||++|+.||++.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999988999999999999999999888776531 2379999999999999999999987666
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
++.++.++||..... ....+++|+|+||+.|.... ...+.++++|||||||++.+ ..+..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 778888888875432 22245899999999774331 13567899999999999874 478888888888
Q ss_pred CCcEEEEeccccHHH
Q 001264 648 DRQTVLFSATFPRQV 662 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~ 662 (1112)
..++|+||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 999999999998654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=2.4e-17 Score=202.02 Aligned_cols=317 Identities=15% Similarity=0.150 Sum_probs=194.8
Q ss_pred CChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 489 KPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|.|.+.+. .+..|+++|+.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58999998885 45689999999999999999999999998764 25789999999999999999999988
Q ss_pred hhcCceEEEEeCCCC----hHH--------------HHHH----------------------------------------
Q 001264 565 KVMGVRCVPVYGGSG----VAQ--------------QISE---------------------------------------- 586 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~----~~~--------------~~~~---------------------------------------- 586 (1112)
...+++++.++|+.+ ... .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 877788777666431 000 1111
Q ss_pred ----------------HhcCCeEEEeCchHHHHHHHhcCC--CccccCCceEEEeccchhhhcC----------------
Q 001264 587 ----------------LKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDM---------------- 632 (1112)
Q Consensus 587 ----------------l~~g~~IiV~Tp~~L~~~l~~~~~--~~~~l~~i~~vViDEah~~~~~---------------- 632 (1112)
....++|||+++..|++....... .......-.+|||||||.|.+.
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 011368999999887665432110 0001234579999999997320
Q ss_pred ----------CC------chh--------HH-----------------------------------HH-------HH---
Q 001264 633 ----------GF------EPQ--------IT-----------------------------------RI-------VQ--- 643 (1112)
Q Consensus 633 ----------~f------~~~--------i~-----------------------------------~i-------l~--- 643 (1112)
.+ ... +. .+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred ----------------------h---cC------------------------------CCCcEEEEeccccHHHHHHHHH
Q 001264 644 ----------------------N---IR------------------------------PDRQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 644 ----------------------~---~~------------------------------~~~q~il~SAT~~~~~~~l~~~ 668 (1112)
. .. ....+|++|||+.+ +..+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01235899999986 4445444
Q ss_pred hcCCCeEEEecCccccccCceEEEEecc--------cchhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001264 669 VLNKPVEIQVGGRSVVNKDITQLVEVRP--------ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHG 738 (1112)
Q Consensus 669 ~l~~p~~i~~~~~~~~~~~i~q~~~~~~--------~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~ 738 (1112)
+.-.+..+.++ .++...+.. .+.... ...-...+...|.... .+|.+|||++|...++.++..|. .
T Consensus 395 lGl~~~~~~~~-spf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~ 470 (620)
T 4a15_A 395 TGFEIPFKKIG-EIFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--F 470 (620)
T ss_dssp HCCCCCEEECC-CCSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--S
T ss_pred hCCCceeeecC-CCCCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--h
Confidence 43333333332 222222222 121111 1111233444443332 36889999999999999998876 2
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCCC--CcEEEEeCCCCC-------------------H
Q 001264 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH-------------------Y 795 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~~--v~~VI~~~~p~s-------------------~ 795 (1112)
+..- ...+++...+..+++.|+ +...||+|| ..++.|||+++ +.+||+..+|.. .
T Consensus 471 ~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~ 548 (620)
T 4a15_A 471 EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKG 548 (620)
T ss_dssp CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCH
T ss_pred cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCC
Confidence 2222 555566678999999999 888999997 49999999998 789999888752 1
Q ss_pred H----------HHHHHHccccCCCCccEEEEEec
Q 001264 796 E----------DYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 796 ~----------~y~QriGR~gR~G~~g~~~~~~~ 819 (1112)
- ...|.+||+-|.-..--+++|++
T Consensus 549 ~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 549 WEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred chHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 1 12599999999765444455554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=2e-17 Score=178.87 Aligned_cols=139 Identities=22% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+++|.+++..++.+.++|++++||+|||+++++++... +..+||+|||++|+.||+..+.. +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~----~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI----F 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGG----G
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHh----C
Confidence 47999999999999999999999999999999998887642 45789999999999999998877 3
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001264 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.+.. +..++..++
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~----~~~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAES----YVQIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTT----HHHHHHTCC
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChH----HHHHHHhcc
Confidence 677 777776653 2579999999998765532 12458999999999987654 344555554
Q ss_pred CCCcEEEEeccccHH
Q 001264 647 PDRQTVLFSATFPRQ 661 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~ 661 (1112)
..++|+||||+++.
T Consensus 218 -~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 -APFRLGLTATFERE 231 (237)
T ss_dssp -CSEEEEEEESCC--
T ss_pred -CCEEEEEecCCCCC
Confidence 67899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.71 E-value=2.7e-17 Score=180.89 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=100.7
Q ss_pred cccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEe
Q 001264 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIA 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVa 770 (1112)
...+.|+..|..+|.... .+.++||||++...++.|...|... |+.+..+||++++.+|..+++.|++| .+. +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 346789999999888764 4569999999999999999999885 99999999999999999999999998 666 7899
Q ss_pred cCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEE--EEEecCC
Q 001264 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~--~~~~~~~ 821 (1112)
|+++++|||++++++||+||+||++..|+|++||++|.|+.+.+ |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987765 5566653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.75 E-value=1.1e-08 Score=125.16 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHH--HHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 491 MPIQAQALPVIMSGRDCIGVAKTGSGKT--LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT--~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
++.|..|++.++.++.+|+.|++||||| ++++++++..+.. ..+..+++++||..+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5677777765321 2367899999999999999998887776665
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001264 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
+...... +... ....+ ..++-.+|+.. . +.... .....+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQKK-RIPE--DASTL---HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCCCC-SCSC--CCBTT---TSCC-------------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHHHh-ccch--hhhhh---HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 4321110 0000 00000 01122223221 0 11111 122368999999999 655 56778889999999
Q ss_pred CcEEEEecc
Q 001264 649 RQTVLFSAT 657 (1112)
Q Consensus 649 ~q~il~SAT 657 (1112)
.|+|++.-.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 999998766
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.11 E-value=9.8e-05 Score=91.22 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001264 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+.+-|.+|+..++..++ .||.||.|||||.+.+-.+.+ +.. .+.++||++||...+.++...+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~-------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVK-------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHH-------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHh-------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 577999999999998765 577799999999875544444 433 256899999999999888776644
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00021 Score=89.76 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+..+++.|..|+..++.+.-++|.||.|||||.+... ++.++... .+.++||++||...+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999999877789999999999986443 33333321 2567999999999999888877653
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=0.00013 Score=86.37 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHCCCCCChHHHHHHHHHHHcC----C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001264 483 RKLNYEKPMPIQAQALPVIMSG----R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g----~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.-+.|..|++-|.+++..++.. . .++|.|+.|||||.+. ..++.++.... ...+++++||...|..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 3466788999999999977532 3 7888999999999753 45555554421 136899999988876554
Q ss_pred HH
Q 001264 558 SD 559 (1112)
Q Consensus 558 ~~ 559 (1112)
..
T Consensus 92 ~~ 93 (459)
T 3upu_A 92 KL 93 (459)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.97 E-value=0.00027 Score=87.43 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++-|.+++. .....++|.|+.|||||.+.+.-+...+.... .....+|+|++|+.++.++...+..++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 467899999997 33667999999999999876665655554321 1234799999999999999988887653
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.95 E-value=0.00024 Score=89.14 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001264 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
...+++.|..|+..++.+.-++|.|+.|+|||.+.. .++.++... .+..+|+++||...+.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 456889999999999988888999999999998644 444454432 356899999999999888776654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.87 E-value=2.9e-05 Score=93.97 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=81.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++.|..++..++.+..+++.|+.|+|||++ +..++..+.. .+..+++++||...+..+...+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 357899999999999999999999999999975 3334444433 2567899999998887665432
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
+.....+ ..+.. +.. + . +.. .......+++||||||+.+. ...+..++..++.
T Consensus 253 ~~~a~Ti----------h~ll~---~~~-~--~----~~~---~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 253 GRTASTV----------HRLLG---YGP-Q--G----FRH---NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPP 305 (574)
T ss_dssp TSCEEEH----------HHHTT---EET-T--E----ESC---SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCT
T ss_pred cccHHHH----------HHHHc---CCc-c--h----hhh---hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcC
Confidence 2111111 01100 000 0 0 000 01233467899999999653 3466677777777
Q ss_pred CCcEEEEecc
Q 001264 648 DRQTVLFSAT 657 (1112)
Q Consensus 648 ~~q~il~SAT 657 (1112)
..++|++.-.
T Consensus 306 ~~~lilvGD~ 315 (574)
T 3e1s_A 306 GARVLLVGDT 315 (574)
T ss_dssp TCEEEEEECT
T ss_pred CCEEEEEecc
Confidence 7777776544
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.83 E-value=0.00011 Score=90.25 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001264 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+..+++.|..|+..++.+.-++|.||+|+|||.+.. .++.++... .+..+||++||...+.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 456889999999999988888999999999998644 344444432 356899999999999988776654
No 102
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.70 E-value=5.2e-05 Score=72.39 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=62.3
Q ss_pred cCeEEEEEe--cCCCc---cchhhcccchhhhhHHhhhCCeEeccceeeCC-CC-CCC------CCCCceEEEEEeCCHH
Q 001264 1011 EHYEAELEI--NDFPQ---NARWKVTHKETLGPISEWTGAAITTRGQYFPP-SR-IAG------PGERKLYLFIEGPTEQ 1077 (1112)
Q Consensus 1011 ~~~~~~~~I--Nd~pq---~~R~~~t~~~~~~~i~~~tg~~i~~kG~y~~~-~~-~~~------~~~~~Lyl~ie~~~~~ 1077 (1112)
..+...|.| .+||- .-+..=..+.|+.+|++.|||.|+++|+..-. ++ ... ...-+||++|.|++..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 345665555 56773 33677799999999999999999998864211 11 111 1245999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001264 1078 SVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1078 ~v~~a~~~i~~~~~e~ 1093 (1112)
.|++|+.+|+.||.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999763
No 103
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=0.00011 Score=68.60 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=60.5
Q ss_pred eEEEEEe--c-CCCc---cchhhcccchhhhhHHhhhCCeEeccce---eeCCCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 001264 1013 YEAELEI--N-DFPQ---NARWKVTHKETLGPISEWTGAAITTRGQ---YFPPSRIAGPGERKLYLFIEGPTEQSVKRAK 1083 (1112)
Q Consensus 1013 ~~~~~~I--N-d~pq---~~R~~~t~~~~~~~i~~~tg~~i~~kG~---y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~ 1083 (1112)
+...|.| . .||. ..+-.=..+.|+.+|++.|||.|.++|+ |+.+.... ...-+||++|.|++...|++|+
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~-e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGR-EAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSS-CCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccccccc-ccCCCcEEEEEeCCHHHHHHHH
Confidence 4444444 4 2564 2333336789999999999999999986 44443322 2346899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001264 1084 AELKRVLEDFTN 1095 (1112)
Q Consensus 1084 ~~i~~~~~e~~~ 1095 (1112)
.+|+.||.+.-.
T Consensus 91 ~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 91 KLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhchHH
Confidence 999999987653
No 104
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.61 E-value=0.00022 Score=78.49 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=90.0
Q ss_pred ccchhHHHHHHHHhhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001264 696 PESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
..+.|+..|-.+|..+... .+||||++.....+.|..+|...++.+..+.|......+ +. .++.+.|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCC
Confidence 3678888888888776654 499999999999999999999999999999998655322 11 24555666667766
Q ss_pred cccCC-----CCCCcEEEEeCCCCCHHHH-HHHHccccCCC----CccEEEEEecCCcc
Q 001264 775 ARGLD-----VKELELVINFDAPNHYEDY-VHRVGRTGRAG----RKGCAITFISEEDA 823 (1112)
Q Consensus 775 ~~GlD-----i~~v~~VI~~~~p~s~~~y-~QriGR~gR~G----~~g~~~~~~~~~d~ 823 (1112)
+-|++ +..+++||.||..|++..= +|.+-|+.|.| +.-.+|.|++....
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 66675 6789999999999998774 99898888873 34467778876543
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.16 E-value=0.0025 Score=72.57 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.|+|+|...+..+...+-+++..+-+.|||.+++..++..+... .+..+++++||...|..++..+..++..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 67899999998776556788899999999998777666554432 35679999999999998888888777654
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.03 E-value=0.0038 Score=77.40 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+++-|.+++.. .+..++|.|..|||||.+.+.-+...+.... -....+|+|+.|+..|.++...+...+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 3677899999999999886666655554311 1235789999999999999888877654
No 107
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.49 E-value=0.0017 Score=62.22 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=53.5
Q ss_pred EEecCCCcc-chhhc--ccchhhhhHHhhhCCeEecccee--eCCCC------CCC--CCCCceEEEEEeCCHH-----H
Q 001264 1017 LEINDFPQN-ARWKV--THKETLGPISEWTGAAITTRGQY--FPPSR------IAG--PGERKLYLFIEGPTEQ-----S 1078 (1112)
Q Consensus 1017 ~~INd~pq~-~R~~~--t~~~~~~~i~~~tg~~i~~kG~y--~~~~~------~~~--~~~~~Lyl~ie~~~~~-----~ 1078 (1112)
|.+++||-- ..-+| ..+.|+.+|++.|||.|.+||+= ....+ .|. ..+-+||++|+|.+.. .
T Consensus 8 IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~ 87 (140)
T 2bl5_A 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87 (140)
T ss_dssp CCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHH
T ss_pred cCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHH
Confidence 455677732 22333 58999999999999999999852 10000 011 1356799999998874 8
Q ss_pred HHHHHHHHHHHHH
Q 001264 1079 VKRAKAELKRVLE 1091 (1112)
Q Consensus 1079 v~~a~~~i~~~~~ 1091 (1112)
|++|+.+|+.+|.
T Consensus 88 l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 88 LKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999986
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.43 E-value=0.018 Score=70.08 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+... .+..+++++||...|..++..++.++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 57899999988775567789999999999997776666555442 256799999999999999888888776543
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.0096 Score=60.72 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|+|||+.++-.+.+... .+..++|+.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--------TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEeec
Confidence 4666788999999999876555544432 24578888886
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.33 E-value=0.01 Score=60.03 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHH
Q 001264 491 MPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 491 t~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.|..++..+. .|..++++||+|+|||+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 46789999999999997543
No 111
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.31 E-value=0.0082 Score=61.53 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.+++|++|||||++++-.+.+... .+.+++|+.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--------~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEec
Confidence 3455777899999999876655555432 36789999986
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.02 E-value=0.028 Score=64.98 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||+.....+. ++.. .|.++++++ . .+.-+. ..+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~-------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d---- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK-------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN---- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC----
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC----
Confidence 466779999999986544333 2222 244565555 3 333332 3445555556665543322221
Q ss_pred HHHHhcCCeEEEeCchHHH-HHHHhcCCCccccCCceEEEeccchhhh---cCCCchhHHHHHHhcCCCCcEEEEecccc
Q 001264 584 ISELKRGTEIVVCTPGRMI-DILCTSGGKITNLRRVTYLVMDEADRMF---DMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~-~~l~~~~~~~~~l~~i~~vViDEah~~~---~~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
|..+. ..+.. .....+++||||.+-++. +..+...+..++..+.++.-+++++|+..
T Consensus 164 --------------p~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 164 --------------PIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------------HHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------------HHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 11111 12211 122468899999998643 33355667777777778777888888875
Q ss_pred HHHHHHHHHh
Q 001264 660 RQVEILARKV 669 (1112)
Q Consensus 660 ~~~~~l~~~~ 669 (1112)
......+..|
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5444444443
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.86 E-value=0.0096 Score=62.56 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=51.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+++.|++|+|||++++-.+.+... .|.+++|+.|...-- ....++..+|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~--------~g~kVli~~~~~d~r-----~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKIDTR-----SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECCCGG-----GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh--------cCCEEEEEEeccCch-----HHHHHHHhcCCCc-----------
Confidence 4556777899999999876655554432 256788887754210 0001122222110
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh
Q 001264 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 583 ~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
..+.+.+...++..+... ..-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 123345556666655432 11235789999999964
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.85 E-value=0.012 Score=61.05 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|+-.+++|++|||||+.++--+.++.. .+.++||+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEecc
Confidence 444567899999999887766666543 367899999864
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.43 E-value=0.031 Score=58.45 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|+-.+++|++|||||+.++--+.++.. .|.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCeEEEEeecC
Confidence 4666778899999999887766666533 367889998864
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.26 E-value=0.13 Score=59.47 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=70.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||++..-.+ .++.. .|.++++++ |.|.-+. ..+..++...++.+.....+......
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~i 170 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKL 170 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHHH
Confidence 46778999999998654433 33332 255666665 5555443 45556666667766544333221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHH
Q 001264 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
+ .+.+.. .....+++||||.+=++.. ......+..+.....++.-++++.||.....
T Consensus 171 ~-----------------~~al~~-----a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 171 A-----------------KEGVDY-----FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp H-----------------HHHHHH-----HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred H-----------------HHHHHH-----HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 1 111111 1112477888888865421 1123345556666677777788888875544
Q ss_pred HHHHHHh
Q 001264 663 EILARKV 669 (1112)
Q Consensus 663 ~~l~~~~ 669 (1112)
...+..|
T Consensus 229 ~~~a~~f 235 (443)
T 3dm5_A 229 YNQALAF 235 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 117
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.23 E-value=0.016 Score=66.75 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=60.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 585 (1112)
-.++.|+.|||||..+.- ++ . ....||++||++++..|.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~----~--------~~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RV----N--------FEEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HC----C--------TTTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHHHHH-Hh----c--------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 366789999999985432 11 1 124599999999998776655321 110
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001264 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 586 ~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
....+-|.|...++. +.. . ...-.+++||||||- |++.+ .+..++..++. .++|++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~-~-~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYG-K-GARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTT-S-SCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc---CCC-C-CCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 112334777666532 111 1 111247899999998 44433 23333444433 556666555
No 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.12 Score=57.26 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=19.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+..+++.||+|+|||++ +-.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 346799999999999975 4445555543
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.11 E-value=0.014 Score=57.30 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..++++|++|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999743
No 120
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.09 E-value=0.034 Score=69.35 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|-|.+|+.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+.|+..|.++...+..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4688999999865 3568999999999999987666665555321 123479999999999999988887764
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.98 E-value=0.17 Score=51.89 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=17.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
..+++.|++|+|||..+. .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 679999999999997533 344443
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.93 E-value=0.058 Score=54.97 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|||||+-.+-.+-++... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 45667888999999997655555555443 4678999886
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.86 E-value=0.028 Score=58.11 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=28.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|.-.+++|++|||||+.++--+.+... .+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH--------cCCceEEEEecc
Confidence 4566788899999999866655544432 256789999854
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.83 E-value=0.091 Score=58.49 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999753
No 125
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.82 E-value=0.046 Score=66.17 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHc--CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001264 489 KPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~--g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+|..|.+++..++. ..-.++.|+-|.|||.+..+.+- .+. ..++|.+||.+-+..+. .|+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~----------~~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA----------GRAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS----------SCEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH----------hCcEEECCCHHHHHHHH----HHhhC
Confidence 689999999998886 33467889999999965554443 221 13689999988765432 22211
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcC
Q 001264 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~ 646 (1112)
.|-+..|..++. .+..+++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~ll~~~- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQLVSRF- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHHHTTS-
T ss_pred -------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHHHhhC-
Confidence 144556654321 23458899999999764 56666666533
Q ss_pred CCCcEEEEecccc
Q 001264 647 PDRQTVLFSATFP 659 (1112)
Q Consensus 647 ~~~q~il~SAT~~ 659 (1112)
..|+||.|..
T Consensus 280 ---~~v~~~tTv~ 289 (671)
T 2zpa_A 280 ---PRTLLTTTVQ 289 (671)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CeEEEEecCC
Confidence 3688888864
No 126
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.75 E-value=0.16 Score=51.72 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=74.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCCh---
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGV--- 580 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~--- 580 (1112)
..+++...+|.|||.+++-.+++.+- .|.+|+|+-=... ... .+. .++..+++.+...--|-..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--------~G~rV~~vQF~Kg~~~~---gE~-~~l~~L~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--------HGKNVGVVQFIKGTWPN---GER-NLLEPHGVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--------TTCCEEEEESSCCSSCC---HHH-HHHGGGTCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEEeeCCCCCc---cHH-HHHHhCCcEEEEcccccccCCC
Confidence 46888899999999998888887754 3778888832111 000 000 1112223333221111110
Q ss_pred --HHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEec
Q 001264 581 --AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 581 --~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SA 656 (1112)
..+.... -..| ..+.. ...-..+++|||||+-..+..++. ..+..++...+....+|+++-
T Consensus 97 ~~~~~~~~a----------~~~l-~~a~~----~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 97 NREADTAAC----------MAVW-QHGKR----MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp GHHHHHHHH----------HHHH-HHHHH----HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CcHHHHHHH----------HHHH-HHHHH----HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 0111100 1111 11111 011256899999999887666644 456677777777777777777
Q ss_pred cccHHHHHHH
Q 001264 657 TFPRQVEILA 666 (1112)
Q Consensus 657 T~~~~~~~l~ 666 (1112)
-.|+.+..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 7887766554
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.73 E-value=0.12 Score=51.79 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
...++++|++|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.69 E-value=0.18 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
...++++|++|+|||..+. .+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~-~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE-GLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 3579999999999997533 333343
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.58 E-value=0.11 Score=64.88 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=70.7
Q ss_pred HHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCCCC
Q 001264 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLDVK 781 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlDi~ 781 (1112)
++.....+.++||.+|+..-+..++..|... ++.+..+||+++..++..++..+.+|..+|||+|. .+...+.+.
T Consensus 410 il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 410 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 3333334679999999999988888777654 78999999999999999999999999999999996 344678889
Q ss_pred CCcEEEEeCCCC
Q 001264 782 ELELVINFDAPN 793 (1112)
Q Consensus 782 ~v~~VI~~~~p~ 793 (1112)
++.+||.=..-.
T Consensus 490 ~l~lVVIDEaHr 501 (780)
T 1gm5_A 490 NLGLVIIDEQHR 501 (780)
T ss_dssp CCCEEEEESCCC
T ss_pred CCceEEecccch
Confidence 999998644433
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.56 E-value=0.24 Score=53.46 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997543
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.54 E-value=0.063 Score=70.97 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+|+-|.++|..- +.+++|.|.-|||||.+.+--++..+..... .-....+|+|++|+..|..+...+...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 35789999998754 8899999999999999887777777665321 1123479999999999999998887754321
Q ss_pred CceEEEEeCCC-ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 568 GVRCVPVYGGS-GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 568 ~i~~~~~~gg~-~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
... .... ....++.. -..+-|+|...|..-+.........+.. .+-|+||..
T Consensus 85 ~~~----~~~~~~~~~~~~~---~~~~~i~T~hsf~~~~l~~~~~~~~~~~-~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LVQ----RPGSLHIRRQLSL---LNRASISTLHSFCLQVLKKYYYLIDLDP-GFRIADQTE 137 (1232)
T ss_dssp HHH----STTCHHHHHHHHH---TTTSEEECHHHHHHHHHHHHGGGTTCCT-TCEECCHHH
T ss_pred hhc----CcchHHHHHHHhc---cCCCeEEeHHHHHHHHHHhhHHhcCCCC-CCeeCCHHH
Confidence 000 0000 11112222 2356789988876544433222223321 233778865
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.32 E-value=0.14 Score=56.52 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
+..+++.|++|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999975443
No 133
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.07 E-value=0.054 Score=47.41 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
....|.|.. ..+...+ ..+.++.+|++.|||.|.+-. .+..+...++. +.|.| +...|..|+..|..++.
T Consensus 14 ~~~~i~Ip~--~~ig~IIGkgG~~Ik~I~~~tga~I~i~~----~~~~~~~~er~--v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPA--GKAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDKP--LRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECT--TTHHHHHTTTTHHHHHHHHHHTCEEEECS----SSCSSTTSCEE--EEEEE-CHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCh--hheeeeECCCCHHHHHHHHHHCCEEEEcC----CCCCCCCCceE--EEEEe-CHHHHHHHHHHHHHHhc
Confidence 455677653 2454444 568999999999999999854 22223334554 66779 99999999999999885
Q ss_pred H
Q 001264 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 85 e 85 (85)
T 2opv_A 85 E 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.82 E-value=0.19 Score=58.54 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..+++.|++|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999753
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.81 E-value=0.062 Score=58.52 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=31.3
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ-~~ai~~i--l~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.++.-....++.|...-. .+.+ .+.+..+ ..+..+++.||+|+|||..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344578887766666665543210 0111 1111111 24567999999999999753
No 136
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=93.66 E-value=0.23 Score=43.57 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=46.6
Q ss_pred cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q 001264 1032 HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQA 1097 (1112)
Q Consensus 1032 ~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~~~~~ 1097 (1112)
.+.++.+|++.|||.|.+-. ...+.+|...-.+.|.|. ..+|..|+..|..+|.+.-...
T Consensus 21 gG~~Ik~I~~~tga~I~I~~-----~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp GGHHHHHHHHHHCCEEEECC-----TTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHhCCEEEEcc-----CCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccc
Confidence 46999999999999998843 112223444556888997 8899999999999999876654
No 137
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.58 E-value=0.22 Score=57.41 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=66.1
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc----ccCCCCCCc
Q 001264 712 YEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA----RGLDVKELE 784 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~----~GlDi~~v~ 784 (1112)
..++++||.+|++.-+..++..|.. .++.+..+||+.+..++...+..+..|...|+|+|.-.- .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3467899999999999999999988 588999999999999998899999999999999994221 126667888
Q ss_pred EEEEeCC
Q 001264 785 LVINFDA 791 (1112)
Q Consensus 785 ~VI~~~~ 791 (1112)
+||.=.+
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886433
No 138
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.53 E-value=0.09 Score=44.88 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+...|.|..- .+...+- .+.++.+|++.|||.|.+-.. .++...=.+.|.|. ..+|+.|+..|..+|
T Consensus 4 ~~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 4 TTSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP--------VEGSTDRQVTITGS-AASISLAQYLINVRL 72 (76)
T ss_dssp CEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC--------CCCCCeEEEEEEeC-HHHHHHHHHHHHHHH
Confidence 35556666442 4444443 478999999999999999641 22333446778897 999999999999998
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.++
T Consensus 73 ~~E 75 (76)
T 2p2r_A 73 SSE 75 (76)
T ss_dssp TTC
T ss_pred Hcc
Confidence 765
No 139
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.44 E-value=0.11 Score=44.22 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=44.6
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
+...+ ..+.++.+|++.|||.|.+-. ...+.+|...-.+.|.|. ..+|+.|+..|..+|.|+
T Consensus 14 vg~IIGkgG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 14 VGAILGKGGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYE 76 (76)
T ss_dssp HHHHHCSTTHHHHHHHHHHCCEEEECC-----TTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC--
T ss_pred cceEECCCchHHHHHHHHhCCEEEECc-----CCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcC
Confidence 44433 357899999999999998843 212233445556888897 889999999999998653
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.37 E-value=0.16 Score=49.20 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHcCCCEEEEcCCCChHHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~l 522 (1112)
...+..+++.|++|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467789999999999997543
No 141
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=93.29 E-value=0.18 Score=43.74 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=54.2
Q ss_pred cCeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
..+...|.|..- .+...+-+ +.++.+|++.|||.|.+-.. .++...-.+.|.| +..+|+.|+..|..+
T Consensus 5 ~~~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 73 (82)
T 1zzk_A 5 PIITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITG-TQDQIQNAQYLLQNS 73 (82)
T ss_dssp CCEEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT--------TSCSSEEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC--------CCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 356777777653 56666654 69999999999999998531 1233334678899 599999999999999
Q ss_pred HHHH
Q 001264 1090 LEDF 1093 (1112)
Q Consensus 1090 ~~e~ 1093 (1112)
+.+.
T Consensus 74 i~~~ 77 (82)
T 1zzk_A 74 VKQY 77 (82)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 142
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.21 E-value=0.28 Score=43.66 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=57.2
Q ss_pred cCeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
..+...|.|..- .++..+=+ +.++..|++.|||.|.+- + ++++-=.+.|.|+ ...|.+|+..|..+
T Consensus 15 ~~~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~-----~~~~~~~V~I~G~-~e~v~~A~~~I~~i 81 (94)
T 2cte_A 15 TQASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQIP-----R-----PDDPSNQIKITGT-KEGIEKARHEVLLI 81 (94)
T ss_dssp SCEEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBCC-----C-----TTSSCCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CceEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEeC-----C-----CCCCCCeEEEEEC-HHHHHHHHHHHHHH
Confidence 357888888754 78888877 599999999999999882 1 1111126889999 99999999999999
Q ss_pred HHHHHHH
Q 001264 1090 LEDFTNQ 1096 (1112)
Q Consensus 1090 ~~e~~~~ 1096 (1112)
+.+....
T Consensus 82 ~~~~~~~ 88 (94)
T 2cte_A 82 SAEQDKR 88 (94)
T ss_dssp HHHHHTC
T ss_pred hhccccc
Confidence 9887644
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.13 E-value=0.17 Score=56.67 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 491 t~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+|..++..+. .|+ -+|+.||.|+|||..+. .+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 466666665443 443 38889999999997544 3444444
No 144
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.97 E-value=0.16 Score=56.01 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHH-HH-HHcCCCEEEEcCCCChHHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QAL-PV-IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~-~ai-~~-il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+++.|...-. .|+.. +.+ .. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44678888766666665543100 01000 000 00 124567999999999999753
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.87 E-value=0.33 Score=55.07 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+++.|++|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999753
No 146
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.31 Score=56.17 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
..|-.+|.+.+--..+.+.|... .+..|--++...++ -.+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 45677899998777777766531 12222222222111 2467999999999999753
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.75 E-value=0.74 Score=47.08 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEec
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.+... ....+..++........+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999987532 23345555555555554554443
No 148
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.32 E-value=0.16 Score=56.48 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEec
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.|........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999988622233445555555555555555433
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.21 E-value=0.28 Score=54.76 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.|++|+|||+.+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997543
No 150
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.21 E-value=0.39 Score=54.29 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++||+|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999753
No 151
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.20 E-value=0.62 Score=51.64 Aligned_cols=52 Identities=15% Similarity=0.334 Sum_probs=30.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~l 522 (1112)
|-.+|.++.-...+++.|...-. .|. ..|.++ ..+.+|+.||+|+|||+.+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578888777777666553210 000 011111 13569999999999997543
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.04 E-value=0.77 Score=51.78 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..+++.|++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999753
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.03 E-value=0.15 Score=53.48 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.98 E-value=0.27 Score=55.89 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.++++|++|+|||... ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6899999999999753 3344443
No 155
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=91.97 E-value=0.17 Score=46.32 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=53.1
Q ss_pred EEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001264 1014 EAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e 1092 (1112)
...|.|..- .+...|=+ +.++.+|++.|||.|.+-..- .+..+..--.+.|.| +.++|++|+..|..+|.+
T Consensus 8 ~~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-----~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQL-----PPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCC-----CTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCcc-----CCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 456666542 56666654 689999999999999985432 122233345678889 999999999999999887
Q ss_pred HH
Q 001264 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
..
T Consensus 80 ~~ 81 (107)
T 2hh2_A 80 PL 81 (107)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 156
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=91.95 E-value=0.31 Score=42.95 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=52.3
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. .| +...=.+.|.|. .++|+.|+..|..+|
T Consensus 13 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~------~~--~~~~~~v~I~G~-~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 13 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP------LE--GSEDRIITITGT-QDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC------CS--SSSEEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC------CC--CCCccEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46667776432 455555 4579999999999999998531 12 233346778897 899999999999999
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 82 ~e~ 84 (89)
T 1j5k_A 82 KQY 84 (89)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.94 E-value=1.6 Score=45.06 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999753
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.86 E-value=0.47 Score=54.22 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.|++|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 159
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=91.78 E-value=0.31 Score=43.20 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...|= .+.++.+|++.|||.|.+-..- ++...-.+.|.|. ...|+.|+.+|..+|
T Consensus 14 ~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--------~g~~~r~v~I~G~-~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 14 VMTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS--------GGLPERSCMLTGT-PESVQSAKRLLDQIV 82 (92)
T ss_dssp CEEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC--------TTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC--------CCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 45667777542 4555544 4789999999999999985421 2334456788897 899999999999998
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 83 ~~~ 85 (92)
T 1x4n_A 83 EKG 85 (92)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
No 160
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.69 E-value=0.11 Score=57.27 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.23 E-value=0.29 Score=54.90 Aligned_cols=42 Identities=10% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|. ++......+..++...+....+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4578999999998 44444455666676665555555555443
No 162
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.22 E-value=0.95 Score=49.48 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001264 616 RRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++||||++-.+. +......+..+...+.++.-++++.++........+.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 467899999995432 1112234444455555655556677765444333333
No 163
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.13 E-value=0.2 Score=57.00 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=30.7
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|=-....+.|... .+..|--++...+ --.+.+|+.||.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 446888887555555555431 1111111111111 12378999999999999753
No 164
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=91.04 E-value=0.43 Score=43.53 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred EEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001264 1014 EAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e 1092 (1112)
..+|.|..- .+...|= .+.++.+|++.|||.|.+... . ++.+--.+.|.|. .++|++|+..|..+|.+
T Consensus 12 ~~~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~~------~--~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 12 GIDVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQD------D--GTGPEKIAHIMGP-PDRCEHAARIINDLLQS 80 (106)
T ss_dssp CEEEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECSS------C--SSSSEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEecC------C--CCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 345666432 4555554 478999999999999998531 0 1223345778886 89999999999999987
Q ss_pred HH
Q 001264 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
.-
T Consensus 81 ~~ 82 (106)
T 2hh3_A 81 LR 82 (106)
T ss_dssp HC
T ss_pred cc
Confidence 53
No 165
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.83 E-value=1.3 Score=48.26 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=29.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH---------HcCCCEEEEcCCCChHHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI---------MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~i---------l~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.++.-...+++.|...- .+|.. ..++.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3457888766666666554311 01111 13568999999999999753
No 166
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=90.44 E-value=0.24 Score=44.20 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001264 1009 MPEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1009 ~~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~ 1087 (1112)
.|..+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. +......++ .+.|.| +...|+.|+..|.
T Consensus 11 ~p~~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~ 81 (94)
T 1x4m_A 11 GPGNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQD----GPQNTGADK--PLRITG-DPYKVQQAKEMVL 81 (94)
T ss_dssp CCCCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCS----CCCSSCSCE--EEEEEE-CTTTHHHHHHHHH
T ss_pred CCCcEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCC----CCCCCCCce--EEEEEe-CHHHHHHHHHHHH
Confidence 35667888888542 555555 4589999999999999987432 111111234 466789 8889999999999
Q ss_pred HHHHH
Q 001264 1088 RVLED 1092 (1112)
Q Consensus 1088 ~~~~e 1092 (1112)
.+|.+
T Consensus 82 ~~i~~ 86 (94)
T 1x4m_A 82 ELIRD 86 (94)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 99865
No 167
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.40 E-value=0.47 Score=61.60 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=65.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----ccccCCCCCCc
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARGLDVKELE 784 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~GlDi~~v~ 784 (1112)
.+.++||.+|++.-|..++..|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. +++.++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 456899999999999999999988 4678999999999988888999999999999999942 222 5677899
Q ss_pred EEEEeC
Q 001264 785 LVINFD 790 (1112)
Q Consensus 785 ~VI~~~ 790 (1112)
+||.=.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 988633
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.27 E-value=1.8 Score=47.81 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=29.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+.+.|...-. .|.+ .|.++ ..+.+|+.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34689988776766665543100 0000 01111 1257999999999999753
No 169
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=90.17 E-value=0.49 Score=39.89 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
+...|.|.. ..+...+- .+.++.+|++.|||.|.+-.. +.+-=.+.|.|. ..+|..|+.+|..+|.
T Consensus 5 ~~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----------~~~er~v~I~G~-~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----------CCSEEEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----------CCCcEEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 344444433 14444443 468999999999999998431 222335788898 9999999999999987
Q ss_pred H
Q 001264 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 72 e 72 (73)
T 2axy_A 72 E 72 (73)
T ss_dssp C
T ss_pred c
Confidence 6
No 170
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.07 E-value=1.1 Score=48.76 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 171
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=90.06 E-value=0.89 Score=41.23 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=51.0
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
....|.|..- .+...+= .+.++.+|++.|||.|.+-..- +..+..--.+.|.|..+ .|+.|+..|..+|.
T Consensus 15 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~------~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 15 VFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKES------EGTLLLSRLIKISGTQK-EVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSS------CCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCC------CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHh
Confidence 3556666432 5666554 4789999999999999985321 11111223577889877 79999999999997
Q ss_pred HHH
Q 001264 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 86 e~~ 88 (104)
T 1we8_A 86 EDE 88 (104)
T ss_dssp HHH
T ss_pred hCh
Confidence 654
No 172
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.94 E-value=1.2 Score=39.92 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=56.1
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.|...|.|..- .++-.+=+ +.++..|++.|||.|.+- +...|. ...-.+.|.|+ ...|..|+..|..|+
T Consensus 16 ~~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~~~--~~~~~V~I~G~-~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 16 SFKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQFP-----DKDDGN--QPQDQITITGY-EKNTEAARDAILRIV 85 (97)
T ss_dssp TCEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEECC-----CTTTCS--SCSSEEEEESC-HHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEec-----CCCCCC--CCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 47888888754 77777765 899999999999999873 222222 23345778898 889999999999999
Q ss_pred HHHHH
Q 001264 1091 EDFTN 1095 (1112)
Q Consensus 1091 ~e~~~ 1095 (1112)
.+.-.
T Consensus 86 ~e~e~ 90 (97)
T 2ctl_A 86 GELEQ 90 (97)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
No 173
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.87 E-value=0.53 Score=41.95 Aligned_cols=70 Identities=26% Similarity=0.309 Sum_probs=54.1
Q ss_pred cCeEEEEEecCCCccchhhcccc-hhhhhHHhhh-CCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVTHK-ETLGPISEWT-GAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~-~~~~~i~~~t-g~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~ 1088 (1112)
+.....|.|+- ...|..+-.+ .++.+|++.| ||.|.+ |. .|...-.+.|.|+++ .|++|+.+|+.
T Consensus 15 ~~vt~~i~Ip~--~~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~-----~g~~~~~V~I~G~~~-~v~~A~~~I~~ 81 (95)
T 2ctj_A 15 NIAEVEVSIPA--KLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRGPSS-DVEKAKKQLLH 81 (95)
T ss_dssp SSCCEEEECCH--HHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEESCHH-HHHHHHHHHHH
T ss_pred hcEEEEEEECH--HHHhhhCCCCchhHHHHHHHcCCCEEEe-----CC-----CCCCcceEEEEcCHH-HHHHHHHHHHH
Confidence 34566777764 3777777655 9999999999 999965 32 234445789999988 99999999999
Q ss_pred HHHHH
Q 001264 1089 VLEDF 1093 (1112)
Q Consensus 1089 ~~~e~ 1093 (1112)
|+.+.
T Consensus 82 iv~e~ 86 (95)
T 2ctj_A 82 LAEEK 86 (95)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98774
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.71 E-value=0.6 Score=54.31 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 368999999999997543
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.66 E-value=1.8 Score=47.95 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred ceEEEeccchhhh-cCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001264 618 VTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 618 i~~vViDEah~~~-~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l 670 (1112)
+.+++||-+-++- +..+...+..+...+.++..++++.+|....+...+..+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4577788776542 1223445555666667777788888887666655555543
No 176
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.66 E-value=2.4 Score=46.45 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.-++++|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3467789999999975443
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.46 E-value=0.96 Score=59.11 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=70.9
Q ss_pred chhHHHHH-HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001264 698 SDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|....+ ..+.....+.++||.||+..-+...+..|... ++.+..++|..+..++..++..+..|..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45554333 22233334569999999999998888888753 67899999999999999999999999999999994
Q ss_pred -cccccCCCCCCcEEEE
Q 001264 773 -VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 -v~~~GlDi~~v~~VI~ 788 (1112)
.+...+.+.++.+||.
T Consensus 715 ~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred HHHhCCccccccceEEE
Confidence 4556688888888885
No 178
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=89.45 E-value=0.37 Score=41.69 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=50.5
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+= .+.++.+|++.|||.|.+-.. .++...=.+.|.|.. .+|+.|+..|..+|
T Consensus 5 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i 73 (82)
T 1wvn_A 5 QTTHELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSA-ASISLAQYLINARL 73 (82)
T ss_dssp CEEEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECH-HHHHHHHHHHHHHT
T ss_pred cEEEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCH-HHHHHHHHHHHHHH
Confidence 45667777543 5555554 468999999999999998642 123333457778965 89999999999998
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 74 ~~~ 76 (82)
T 1wvn_A 74 SSE 76 (82)
T ss_dssp C--
T ss_pred Hhh
Confidence 876
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.38 E-value=0.97 Score=50.86 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
++.+|+.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 180
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=89.33 E-value=0.72 Score=38.61 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.....|.|+.- .++..+ ..+.++.+|++.|||.|.+- + .|++.=.+.|.|+. ..|+.|+.+|..|+
T Consensus 4 ~~~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i~-----~-----~g~~~~~V~I~G~~-~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRIP-----P-----DSEKSNLIRIEGDP-QGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEECC-----C-----CCSSSEEEEEEESS-HHHHHHHHHHHHTC
T ss_pred eEEEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEEC-----C-----CCCcccEEEEEcCH-HHHHHHHHHHHHHh
Confidence 34567777754 788888 66889999999999999762 2 12233367888995 78999999998864
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.26 E-value=1.5 Score=45.17 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=54.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999998888765 7889999999987665443 44567799999941 1 234677888
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.12 E-value=1.1 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.|.-++++|++|+|||+.+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 45678889999999997544333
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.92 E-value=1.1 Score=50.53 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.76 E-value=1.1 Score=51.52 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|--..+.+.|... .+..|--++...+ --.+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 3456788877555555554321 1111111111110 12367999999999999753
No 185
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.49 E-value=0.31 Score=56.21 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=30.4
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
.|-.+|.+.|--....+.|... .+..|--++... +--.+.+|+.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 3456788877555555544321 111111111111 0123689999999999997533
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.44 E-value=1.6 Score=46.17 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999997543
No 187
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.33 E-value=0.88 Score=55.01 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=62.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh--hcCCccEEEecCc-c----------cccCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF--KSNVCNLLIATSV-A----------ARGLD 779 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F--~~g~~~VLVaT~v-~----------~~GlD 779 (1112)
..+.+||++|++.-+......|...|+.+..++|+++..++..++..+ ..+..+|||+|.- + ...+.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 367999999999999999999999999999999999999999888888 5788999999962 1 12234
Q ss_pred CCCCcEEEE
Q 001264 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
+..+.+||.
T Consensus 163 ~~~i~~iVi 171 (591)
T 2v1x_A 163 ARRFTRIAV 171 (591)
T ss_dssp TTCEEEEEE
T ss_pred ccCCcEEEE
Confidence 556777775
No 188
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.30 E-value=2.3 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=16.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
-+++.|+.|+|||..+- .+...+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 37899999999997543 333443
No 189
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.23 E-value=1.6 Score=45.69 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=28.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-++++|++|+|||+.++..+...+.. +..++++.- .....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~-e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVAL-EEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEES-SSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHH
Confidence 45678889999999997644444433321 334666653 223344444443
No 190
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.17 E-value=2.7 Score=48.00 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++|+|+.|+|||+.+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568888999999997544
No 191
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.07 E-value=0.94 Score=52.84 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=23.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+++.|++|+|||+.++..+...... .|..|+|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-------~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-------TNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-------SSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 34567778999999997544444433322 144566765
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.60 E-value=0.9 Score=50.68 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++........+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35689999999987532 2234555555555554455544
No 193
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.35 E-value=2.4 Score=50.32 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCCCcEE
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~v~~V 786 (1112)
..+.+||++|++.-+......|...|+.+..+||+.+..++..++..+..|..+|||+|.- + ...+...++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3589999999999999999999999999999999999999999999999999999999942 1 123444567777
Q ss_pred EE
Q 001264 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.34 E-value=0.46 Score=50.13 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCceEEEeccchhhhc-----CCCchhHHHHHHhcCCCCcEEEEeccccH
Q 001264 616 RRVTYLVMDEADRMFD-----MGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~-----~~f~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
....+|||||.-.+++ ......+..++..+...-.+|+++.....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4578999999998775 23333455666555433335666555433
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.13 E-value=0.66 Score=54.03 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+++.|++|+|||..++ -++.++... .+..|+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~s 236 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYS 236 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEE
Confidence 4457778999999996544 444343321 144566665
No 196
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.97 E-value=1.3 Score=39.43 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=54.0
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+...|.|+.- ..+..+ ..+.++..|++.|||.|.+- ++|. ...=.+.|.|+ .+.|+.|+..|..|+
T Consensus 16 ~vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i~----~~g~-----~~~~~V~I~G~-~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 16 MVSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRFP----QSGA-----PDPNCVTVTGL-PENVEEAIDHILNLE 83 (95)
T ss_dssp CCCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEECC----CTTC-----SCTTEEEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEec----CCCC-----CCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46677888754 666665 56789999999999999981 1111 12335778898 589999999999998
Q ss_pred HHHHHH
Q 001264 1091 EDFTNQ 1096 (1112)
Q Consensus 1091 ~e~~~~ 1096 (1112)
.+....
T Consensus 84 ~e~~~~ 89 (95)
T 2ctm_A 84 EEYLAD 89 (95)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 887653
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.91 E-value=1.7 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
.|.-++++|++|+|||+.+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688889999999975444433
No 198
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.71 E-value=1 Score=52.57 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-+.++|++|||||+.+-
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 3457788999999998543
No 199
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.66 E-value=3.7 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.090 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
+.-++++|++|+|||+.....+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3456677999999998644433
No 200
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.59 E-value=0.6 Score=52.63 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.|++|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.58 E-value=1.6 Score=47.95 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35689999999987532 2334555555544444444443
No 202
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.53 E-value=1.1 Score=40.52 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=52.4
Q ss_pred eEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
+...|.|+.- .++..+-+ +.++.+|++.|||.|.+-- +|. ..=.+.|.|+. ..|+.|+..|..++.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I~~----~g~------~~~~V~I~G~~-e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHVPA----PEL------QSDIIAITGLA-ANLDRAKAGLLERVK 83 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEECCC----TTT------TCCEEEEEECH-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEecC----CCC------CcceEEEEcCH-HHHHHHHHHHHHHHh
Confidence 5667777643 67777655 8999999999999998721 222 12278888986 889999999999998
Q ss_pred HHH
Q 001264 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 84 e~e 86 (104)
T 2ctk_A 84 ELQ 86 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 765
No 203
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=86.44 E-value=1.1 Score=44.05 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=53.2
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+...|.|.. ..+.+.+- .+.++.+|++.|||.|.+-+..+| ..++ =.+.|.| +..+|..|+..|..+|
T Consensus 88 ~~~~~i~vp~--~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~-----~~~~--~~v~I~G-~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 88 PVTLRLVVPA--SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP-----NSTE--RAITIAG-IPQSIIECVKQICVVM 157 (160)
T ss_dssp SEEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCST-----TCCE--EEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECh--hheeeEECCCCHHHHHHHHHhCCeEEECCCCCC-----CCCc--eEEEEEc-CHHHHHHHHHHHHHHH
Confidence 3566777753 35666654 578999999999999998764332 2233 3567889 8999999999999998
Q ss_pred HH
Q 001264 1091 ED 1092 (1112)
Q Consensus 1091 ~e 1092 (1112)
.|
T Consensus 158 ~e 159 (160)
T 2jzx_A 158 LE 159 (160)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 204
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.29 E-value=1 Score=50.13 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=23.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|++|+|||..++ -++.++.. .+..|+|+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~-------~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN-------DDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH-------TTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEe
Confidence 34457777999999997544 44434332 245677776
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.29 E-value=1.5 Score=51.50 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=26.3
Q ss_pred ceEEEeccchhhhcCC----------CchhHHHHHHhcCCCCcEEEEecccc
Q 001264 618 VTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 618 i~~vViDEah~~~~~~----------f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.++|+|||+|.|.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999886421 11234445555555566777777754
No 206
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.28 E-value=1.1 Score=52.02 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999753
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.89 E-value=0.87 Score=52.05 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=30.6
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|++.|=-..+.+.|.. +.+..|--++...+ --.+.+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345688887655555554432 11122222222111 12367999999999999753
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.83 E-value=0.64 Score=53.65 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=32.5
Q ss_pred CcccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRKLN---YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~---~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|--..+.+.|...= +..|--++... +--.+.+|+.||.|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 45578999887777766665421 11111111111 112467999999999999753
No 209
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.61 E-value=2.7 Score=45.23 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
+..|.-++++|++|+|||+.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34677788999999999975544443
No 210
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.59 E-value=3.3 Score=43.72 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc--ccCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~--~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ .+...|+|+|. .+. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999999888877664 78999999999876554433 24678999993 122 3567788
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888875
No 211
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=85.51 E-value=4.8 Score=40.66 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=50.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
++++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCc
Confidence 45799999999998887776655 478899999998766543 33333 468999993 33322 577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 77888776
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.11 E-value=1.4 Score=55.84 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
..+++++|++|+|||..+-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997533
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.03 E-value=3.4 Score=45.26 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=23.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.....+|||||||.|.... ...+.+++..-++.. +++|.++-
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t-~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYA-VIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTE-EEEEEESC
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCe-EEEEEECC
Confidence 3467899999999985322 223444444433333 34444443
No 214
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.01 E-value=1.5 Score=48.11 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=22.9
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.|.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999875422 233445555544555555544
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.84 E-value=4.6 Score=47.41 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=25.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc--chhHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP--TRELVQQ 555 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P--treLa~Q 555 (1112)
.++++|.+|+|||+.+...+. ++.. .|.+++++.. .+..+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~-------~G~kVllVd~D~~r~aa~~ 146 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR-------KGWKTCLICADTFRAGAFD 146 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH-------TTCCEEEEEECCSSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEeccccchhHHH
Confidence 477789999999986544433 3322 2455666663 3444443
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.71 E-value=0.59 Score=51.12 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=13.9
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999743
No 217
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.54 E-value=5.1 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHH
Q 001264 498 LPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
...+..|..++++||+|+|||+.+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567899999999999999753
No 218
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.51 E-value=0.59 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=16.5
Q ss_pred CCEEEEcCCCChHHHHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++++|++|+|||+.+...+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688899999999986554433
No 219
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.30 E-value=2.4 Score=50.29 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCceEEEeccchhhhcCC--CchhHHHHHHhcCCCCcEEEEeccc
Q 001264 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~--f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|.|.... +...+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345799999999886432 22344444443 234577777764
No 220
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.25 E-value=6.1 Score=41.29 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
...+||.|+++.-+..++..+... ++.+..++|+.+.......+.. ...|||+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 457999999999998887776653 8899999999998766555432 478999994 222 34577888
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88885
No 221
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.08 E-value=1.3 Score=46.43 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-+++.|++|+|||...+-.+++.+... +..++++.-. .-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHH
Confidence 345688889999999965444444433321 3346666522 22344444443
No 222
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.01 E-value=4.4 Score=42.10 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-c----ccc--cCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-V----AAR--GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v----~~~--GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ +...|+|+|. . +.. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999998888775 47889999998765544333 3578999994 1 112 356677
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 223
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.99 E-value=2.4 Score=46.52 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
...++++|++|+|||+.+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
No 224
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.86 E-value=2.7 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
.|.-++++|++|+|||+.+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456788899999999976554443
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.73 E-value=3.8 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
+.-++++|++|+|||+.+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3446678999999997554433
No 226
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.73 E-value=2.5 Score=43.92 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 358999999999999999888764 67889999999876655443 25789999942 1 13456667
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777774
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.65 E-value=3.8 Score=47.20 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=31.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEE
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
-++++|++|+|||++..-.+... ... .|.+++++. |.+..+... +..+....++.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~------~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~ 160 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK------HKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFF 160 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT------SCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh------cCCeEEEEecCCCCccHHHH---HHhhcccCCeeEE
Confidence 46677999999998655444333 221 145666665 555544432 2233334455443
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.28 E-value=1.5 Score=59.42 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHc------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 498 LPVIMS------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 498 i~~il~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
+..++. ++.++++||+|+|||..++..+..... .|..|+|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEccc
Confidence 556665 678999999999999876665554432 366788887543
No 229
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=83.11 E-value=2 Score=42.23 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=54.7
Q ss_pred cCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
..+.+.|.|.. ..+.+.+- .+.++.+|++.|||.|.+-+. ..|.. ...-.+.|.| +...|+.|+..|..+
T Consensus 83 ~~~~~~i~vp~--~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-----~~~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 83 VKLETHIRVPA--SAAGRVIGKGGKTVNELQNLTAAEVVVPRD-----QTPDE-NDQVIVKIIG-HFYASQMAQRKIRDI 153 (163)
T ss_dssp CCEEEEEEEET--TTHHHHHCGGGHHHHHHHHHHCCEEECCTT-----CCCCT-TSEEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCh--hheeeEEcCCChHHHHHHHHhCCeEEECCC-----CCCCC-CCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 35677888864 25666664 478899999999999987432 12222 2234688999 789999999999999
Q ss_pred HHHHH
Q 001264 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
|.+.-
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98763
No 230
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.79 E-value=2.8 Score=49.02 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=38.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.|....+.|-||||||+++.. ++.. .+..+|||||+..+|.|++..+..|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355678899999999975332 2222 123479999999999999999998864
No 231
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=82.55 E-value=3 Score=40.82 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AAR----GIDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTT----TCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hhc----CCch
Confidence 45799999999998887776655 478899999998766543 33433 4689999942 221 1577
Q ss_pred CCceEEEec
Q 001264 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.-
T Consensus 102 ~~~~~Vi~~ 110 (163)
T 2hjv_A 102 ENISLVINY 110 (163)
T ss_dssp SCCSEEEES
T ss_pred hcCCEEEEe
Confidence 778888763
No 232
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.31 E-value=1.6 Score=49.74 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.5
Q ss_pred CCEEE--EcCCCChHHHHH
Q 001264 505 RDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii--~a~TGsGKT~~~ 521 (1112)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999753
No 233
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.15 E-value=4.1 Score=45.82 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~ 782 (1112)
..++||.||++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888765 7889999999987665544 44567899999931 1 23467788
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888885
No 234
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.11 E-value=2.7 Score=43.94 Aligned_cols=72 Identities=14% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+..... .+..+..+...|||+|. .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999998888765 567888888876433 23345567789999993 3333 3667778
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88775
No 235
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.01 E-value=1.8 Score=37.40 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001264 1010 PEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1010 ~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~ 1088 (1112)
+..+...|.|.+ ..++..+ ..+.++.+|++.|||.|.+-. . ..++ .+.|.|.. +.|++|+.+|..
T Consensus 7 ~~~~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~----~~~~--~v~ItG~~-e~v~~A~~~I~~ 72 (83)
T 2dgr_A 7 GGQTTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R----DKEP--VFAVTGMP-ENVDRAREEIEA 72 (83)
T ss_dssp CCSEEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S----SSCC--EEEEEECT-TTHHHHHHHHHH
T ss_pred CCceEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C----CCCC--eEEEEcCH-HHHHHHHHHHHH
Confidence 345677787765 4666666 457899999999999999821 1 1233 37788876 799999999988
Q ss_pred HH
Q 001264 1089 VL 1090 (1112)
Q Consensus 1089 ~~ 1090 (1112)
++
T Consensus 73 ~i 74 (83)
T 2dgr_A 73 HI 74 (83)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 236
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.70 E-value=25 Score=38.48 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEeccchhhhc---CCCchhHHHHHHhcCCCCcEEEEecc
Q 001264 618 VTYLVMDEADRMFD---MGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 618 i~~vViDEah~~~~---~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
--+|||||+|.+.. ..+...+..++... +... ++++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcC
Confidence 35899999999864 34555565555543 2333 444444
No 237
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.64 E-value=12 Score=39.18 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=51.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCCc
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v~ 784 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.+.......+ .....|||+|.- +. ..+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 48999999999999988887664 57788899998765543332 345789999941 11 245777888
Q ss_pred EEEE
Q 001264 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 238
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.57 E-value=1.3 Score=51.71 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 239
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.51 E-value=4.7 Score=40.78 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=51.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... + .+...|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999999988888664 6788999999886554322 2 34678999994 2222 346677
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 240
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=81.43 E-value=5.6 Score=38.84 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----G~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR----GIDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT----TCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hhc----CCCc
Confidence 45799999999998877766655 478889999998766543 33333 4689999942 221 1567
Q ss_pred CCceEEEec
Q 001264 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.=
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.20 E-value=1.8 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.+.-++++|++|+|||+.....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35668888999999998655443
No 242
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=80.55 E-value=4 Score=40.43 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +. .-.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~----~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA----RGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC----TTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh----cCCCc
Confidence 45899999999998877766554 578899999998776553 33343 4689999942 21 22577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 88888884
No 243
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.75 E-value=4.2 Score=42.07 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=48.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cc-cccCCCCCCc
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VA-ARGLDVKELE 784 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~-~~GlDi~~v~ 784 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ . ....|||+|. .+ ...+++.++.
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 457999999999999999988874 67889999988765544332 2 3478999993 11 2356777888
Q ss_pred EEEE
Q 001264 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
+||.
T Consensus 170 ~lVi 173 (228)
T 3iuy_A 170 YLVI 173 (228)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 244
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.51 E-value=9.8 Score=38.28 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCCcE
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKELEL 785 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v~~ 785 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+. ....|+|+|. .+. ..+++..+.+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999876 467889999887655443332 2478999994 222 3466778888
Q ss_pred EEE
Q 001264 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.39 E-value=3.5 Score=46.35 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|.-++|.|++|+|||.. ++.++..+... +..|+|+..
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEEC
Confidence 45678889999999964 44444444331 345666664
No 246
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=78.92 E-value=11 Score=38.68 Aligned_cols=71 Identities=11% Similarity=0.216 Sum_probs=50.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++. ..+.. ...|+|+|.- +.. -.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~----Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AAR----GLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TTC----SSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hhc----CCCC
Confidence 45789999999988877776655 478899999998876653 33344 3689999942 222 2577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 78888873
No 247
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.75 E-value=1.3 Score=42.44 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=18.0
Q ss_pred HHHHcCCCEEEEcCCCChHHHH
Q 001264 499 PVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 499 ~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.++..+..+++.|++|+|||..
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3445678899999999999974
No 248
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.61 E-value=4.9 Score=40.32 Aligned_cols=72 Identities=13% Similarity=0.289 Sum_probs=43.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCCccc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.+.++||.|+++.-+..++..+.. .++.+..++|+.+..+. +..+.. ...|+|+|.- +..+ .+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G----ld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----AARG----LD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-----hhcC----CC
Confidence 356799999999988877766654 47889999998765443 333333 4689999942 2211 46
Q ss_pred cCCceEEEe
Q 001264 615 LRRVTYLVM 623 (1112)
Q Consensus 615 l~~i~~vVi 623 (1112)
+..+.+||.
T Consensus 112 i~~~~~VI~ 120 (185)
T 2jgn_A 112 ISNVKHVIN 120 (185)
T ss_dssp CCSBSEEEE
T ss_pred cccCCEEEE
Confidence 777888775
No 249
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.56 E-value=9.9 Score=45.27 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=65.4
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH
Q 001264 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL 587 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l 587 (1112)
.+....+....+..+...+... ..+.++||.|+|+.-|..++..+...+. .++.+..++|+.+..+.. ..+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKER-----DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHT-----TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHH
T ss_pred CchhHhhHHHHHHHHHHHHhhc-----CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHH
Confidence 3334445444454555554432 2356899999999999988888877543 367888999998776553 333
Q ss_pred h-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEecc
Q 001264 588 K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 588 ~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
. ....|||||.- +.. -.++..+.+||.-.
T Consensus 389 ~~g~~~vLvaT~~-----~~~----GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 389 KKDESGILVCTDV-----GAR----GMDFPNVHEVLQIG 418 (563)
T ss_dssp HHCSSEEEEECGG-----GTS----SCCCTTCCEEEEES
T ss_pred hcCCCCEEEEcch-----hhc----CCCcccCCEEEEEC
Confidence 3 34799999952 222 15778888887543
No 250
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.54 E-value=2.8 Score=43.14 Aligned_cols=70 Identities=9% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc------cccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~------~~GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +. ..+|+|+|.-. ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999999988887764 6788999998876544332 22 27899999421 235566777
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.37 E-value=3.4 Score=46.16 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=24.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|+.|+|||+.++..+... .. .+..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA-------AGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH-------TTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-------CCCeEEEEEC
Confidence 34668888999999997544444333 32 1445666653
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.19 E-value=4.9 Score=44.37 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=25.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|.-+++.|++|+|||..++..+. .+..... ..+.+..++++.--
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~~~-~gg~~~~vlyi~~e 150 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLPPE-KGGLSGKAVYIDTE 150 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSCGG-GTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhcccc-cCCCCCeEEEEECC
Confidence 356688889999999975444333 3221100 01124467777643
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.74 E-value=4.3 Score=50.60 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.++|++|++|+|||..+-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35679999999999997543
No 254
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.44 E-value=31 Score=33.73 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +. .-.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~----~Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG----RGMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS----TTCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh----cCcch
Confidence 45799999999998877776655 478899999998766543 33333 4689999942 11 12567
Q ss_pred CCceEEEecc
Q 001264 616 RRVTYLVMDE 625 (1112)
Q Consensus 616 ~~i~~vViDE 625 (1112)
..+.+||.=.
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 7788887633
No 255
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.83 E-value=10 Score=40.13 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=52.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc--ccCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~--~GlDi~~ 782 (1112)
+.++||.++++.-+..++..|... ++.+..++|+......... +..| .+|||+|. .+. .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 458999999999999998888764 5678889999886654433 3334 88999993 222 2467888
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.50 E-value=2 Score=48.18 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|.-++|.|++|+|||+. ++.++..+.. .+..++++..-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeccc
Confidence 45678889999999974 4444444433 244567776543
No 257
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.35 E-value=12 Score=44.67 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=55.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+..+||.|+|+.-|..++..+...+. .++.+..++|+.+..+.. ..+.. ...|||||.- +.. -.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~~----GiDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GAR----GMDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GTS----SCCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hhc----CCCc
Confidence 56899999999999998888877543 277888999998776543 33333 4689999952 222 2577
Q ss_pred CCceEEEecc
Q 001264 616 RRVTYLVMDE 625 (1112)
Q Consensus 616 ~~i~~vViDE 625 (1112)
..+.+||.-.
T Consensus 358 p~v~~VI~~~ 367 (579)
T 3sqw_A 358 PNVHEVLQIG 367 (579)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEcC
Confidence 8888888544
No 258
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.30 E-value=2.8 Score=50.00 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..++++||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999743
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.11 E-value=3.6 Score=51.06 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
..|-.+|.+.+.-..+.+.|... .+..|.-++... +...+.+|+.||.|+|||+.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 34567899998888877777642 111221111100 012357999999999999743
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.01 E-value=6.7 Score=43.22 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
++-++++|++|+|||+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577789999999985443
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=75.95 E-value=4.2 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++||+|||||+.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668888999999997543
No 262
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.63 E-value=1.3 Score=47.37 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.4
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|.-++++||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34667788899999999974
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.56 E-value=3.1 Score=47.26 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=28.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.+.+++++|+||||||+..-..+. .+.. .+..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH-------CCCEEEEEeCCcCH
Confidence 567899999999999975444333 3322 25667788787654
No 264
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=74.53 E-value=3.7 Score=40.26 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=47.7
Q ss_pred EEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001264 1014 EAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e 1092 (1112)
..+|.|..- .+.+.+ ..+.++.+|++.|||.|.+- +.+ +.++..--.+.|.| +...|..|+..|..+|.+
T Consensus 3 ~~~~~Vp~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~----~~~--~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 3 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILI----QDG--SQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 73 (164)
T ss_dssp EEEEEECTT--CHHHHTCTTTHHHHHHHHTSCSEEEEC----CCT--TSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTC
T ss_pred EEEEEechh--heeEEECCChHHHHHHHHHhCCeEEEe----cCC--CCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 344555432 455554 45789999999999999772 111 11222233567889 789999999999998875
Q ss_pred H
Q 001264 1093 F 1093 (1112)
Q Consensus 1093 ~ 1093 (1112)
.
T Consensus 74 ~ 74 (164)
T 2jvz_A 74 R 74 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.50 E-value=2.6 Score=52.54 Aligned_cols=17 Identities=35% Similarity=0.243 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.+|++||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997543
No 266
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.48 E-value=10 Score=43.52 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=60.9
Q ss_pred chhHHHHHHHHhhh--hcCCeEEEEeCCHHHHHHHHHHHHhc-CC---CeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001264 698 SDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKH-GY---PCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~-~~---~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
..|....+..+... ...+++||.||+..-+...+..|... ++ .+..+||+.....+..... ...|+|+|
T Consensus 34 ~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T 108 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVAT 108 (494)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEec
Confidence 34554444443333 24679999999999999998888875 55 8999999999887655443 36799999
Q ss_pred C-ccc-----ccCCCCCCcEEEE
Q 001264 772 S-VAA-----RGLDVKELELVIN 788 (1112)
Q Consensus 772 ~-v~~-----~GlDi~~v~~VI~ 788 (1112)
. .+. ..+....+++||.
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 109 PQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HHHHHHHHHTTSCCTTSCSEEEE
T ss_pred HHHHHHHHhcCCcchhhceEEEE
Confidence 3 222 2466778888885
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=74.03 E-value=3 Score=48.34 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+|+.|++|+|||..++-.+. ++..+ |..|+|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~-~~a~~-------g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHH-HHHHT-------TCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHH-HHHHc-------CCEEEEEE
Confidence 34577779999999975444444 43331 44677776
No 268
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.73 E-value=4.6 Score=45.01 Aligned_cols=44 Identities=9% Similarity=-0.088 Sum_probs=24.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
|.-+++.|++|+|||..++. ++..+... ....+.+..++++.-.
T Consensus 122 G~i~~I~G~~GsGKTtla~~-la~~~~~~-~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHT-LCVTAQLP-GAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHH-HHHHTTSC-BTTTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHhcc-cccCCCCCeEEEEECC
Confidence 45678889999999975443 33332211 1111234567777643
No 269
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.45 E-value=9.1 Score=43.99 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=53.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~v 783 (1112)
..++||.|++++-+..++..+... ++.+..++|+.+.......+ .....|||+|. .+.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 348999999999999998888764 57788999999876654433 23578999993 2223 3567788
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88885
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.24 E-value=3.6 Score=45.27 Aligned_cols=50 Identities=12% Similarity=-0.020 Sum_probs=28.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-+|+.|++|+|||..++..++ ++..+ +..+|+++.- .-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~-~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH-HHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 455688889999999965444443 33321 3456777632 22344444443
No 271
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=72.90 E-value=4.7 Score=40.07 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
....|.|.. ..+...+= .+.++.+|++.|||.|.+-... .|.++..-=.+.|.| +...|..|+..|..+|
T Consensus 104 ~~~~i~vp~--~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 104 QEFNFIVPT--GKTGLIIGKGGETIKSISQQSGARIELQRNP-----PPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CEEEEEEET--TTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-----TTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred EEEEEEECh--HHcCeeECCCchHHHHHHHHHCCEEEECCCC-----CCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 455666643 35555554 5789999999999999875431 122222223577889 8999999999998874
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.86 E-value=3.3 Score=56.28 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.|..++++|++|+|||+.++..+...+.. |-.|+++. .-++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEE-ccccHHHHH
Confidence 56789999999999998776666655432 56677775 344445554
No 273
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.79 E-value=2.9 Score=48.24 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=31.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
...+++++|+||||||..+ .+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 3468999999999999864 444444443 2456788889888753
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.77 E-value=4.2 Score=45.46 Aligned_cols=21 Identities=24% Similarity=0.033 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-+.++|+.|||||+.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688889999999975443
No 275
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.71 E-value=8 Score=50.00 Aligned_cols=73 Identities=10% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CC----CeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCC-CCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GY----PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLD-VKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~----~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlD-i~~v 783 (1112)
+.++||.+|++.-|..++..|... ++ .+..+||+.+...+...+..+.+ .+|||+|+ .+..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 468999999999999988888753 56 78999999999888877877777 89999994 2222122 5678
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88885
No 276
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=72.34 E-value=4 Score=53.61 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
-||.|..|||||.+.+--+...+...+ .+..+|+|||.. +..++...+ ...++..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q-~TFt~~~rl---~~~l~~~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQ-MTFLMEYEL---AKTPDMG---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGG-GHHHHHHHH---TCCSSCS----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCc-ccHHHHHHH---HHhhhhc----------------
Confidence 378899999999987766666555421 356789999975 334332222 2222210
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 587 l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
....|-|+|..+|...+....+ ...+.|+|+.+
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g------~~~~~ild~~~ 91 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG------GMSRPFLTSTG 91 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS------CTTSCEECHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC------CCcccCcCHHH
Confidence 0136888998887554443221 12234677766
No 277
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=71.86 E-value=12 Score=42.42 Aligned_cols=72 Identities=13% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCccc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 467899999999999887776655 478899999998866543 33333 468999994 33332 57
Q ss_pred cCCceEEEe
Q 001264 615 LRRVTYLVM 623 (1112)
Q Consensus 615 l~~i~~vVi 623 (1112)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 778888875
No 278
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.84 E-value=9.4 Score=42.74 Aligned_cols=71 Identities=8% Similarity=0.160 Sum_probs=52.6
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~ 782 (1112)
...++||.|+++.-+..++..+... ++.+..++|+.+.......+. ...|+|+|.- + ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999999888887653 688999999998776655443 3679999931 1 23455677
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 279
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.78 E-value=1.2e+02 Score=32.99 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
.+..+|... .....|||.+-..+.-+...|...|+.
T Consensus 195 ~~~~~L~~~--~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 195 QAQQLLKRY--PKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHC--TTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhC--CCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 344444432 356789999999999999999888765
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.75 E-value=9.2 Score=47.88 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+..++++||+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999974
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.73 E-value=3.2 Score=46.49 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+.-++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445688889999999974
No 282
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=70.62 E-value=14 Score=40.25 Aligned_cols=71 Identities=11% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++. ..+.. ...|+|||.- +.. -.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~~----Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AAR----GLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TTC----STTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hhc----Cccc
Confidence 45789999999988776665543 588999999998876653 33333 4689999942 222 2577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 88888874
No 283
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=70.43 E-value=11 Score=44.66 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~ 782 (1112)
.+++||.||++.-+..++..|... ++.+..+||+.+...+...+. ....|||+|. .+..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999998888887765 899999999997655433322 1367999993 22222 4 6778
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888886
No 284
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=70.29 E-value=7.4 Score=38.02 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=44.7
Q ss_pred cchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1025 NARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
.+...+- .+.++.+|++.|||.|.+-.. .+ +...=.+.|.|. ...|+.|+..|..+|.+.
T Consensus 101 ~~g~iIGk~G~~I~~i~~~tg~~I~i~~~------~~--~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 101 SVGVVIGRSGEMIKKIQNDAGVRIQFKQD------DG--TGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp THHHHHCSSSHHHHHHHHHTCCEEEECCC------CT--TSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCCcHhHHHHHHHHCCeEEEeCC------CC--CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 4555554 578999999999999987432 11 222345778897 889999999999998764
No 285
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=69.64 E-value=4.2 Score=41.79 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc--------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLD 779 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~--------~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlD 779 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+...... .+ .....|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999988877654 678888999886443221 11 23578999993 2222 356
Q ss_pred CCCCcEEEE
Q 001264 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777774
No 286
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.48 E-value=13 Score=33.25 Aligned_cols=69 Identities=19% Similarity=0.369 Sum_probs=53.1
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHh-hhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISE-WTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~-~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
+...|.|.-- ..|..+- ++.++.+|.+ ++++.| .||.+ +. .+-|+|+ ...|.+|+.+|..++
T Consensus 27 ~t~~i~vp~~--~h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~~------~~--~ItI~G~-~~~V~~a~~~I~~~v 90 (102)
T 2ctf_A 27 TVSSVAAPSW--LHRFIIGKKGQNLAKITQQMPKVHI-----EFTEG------ED--KITLEGP-TEDVSVAQEQIEGMV 90 (102)
T ss_dssp EEEEEECCST--THHHHHTTTTCHHHHHHHHCSSSEE-----EECSS------SC--EEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHH--HHhhhcCCCCccHHHHHHHcCCcEE-----EeCCC------CC--EEEEECC-HHHHHHHHHHHHHHH
Confidence 5677777743 7888875 4589999999 578877 36651 22 6899999 888999999999999
Q ss_pred HHHHHHh
Q 001264 1091 EDFTNQA 1097 (1112)
Q Consensus 1091 ~e~~~~~ 1097 (1112)
++...+.
T Consensus 91 ~el~~~~ 97 (102)
T 2ctf_A 91 KDLINRS 97 (102)
T ss_dssp HHHHHHS
T ss_pred HHHHhhc
Confidence 8876654
No 287
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=69.48 E-value=7.6 Score=38.47 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=41.8
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
..+.++.+|++.|||.|.+-.. .+ +..--.+.|.|+ ...|.+|+..|..++.+.
T Consensus 20 kgG~~Ik~i~~~tg~~I~i~~~------~~--~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 20 RNGEMIKKIQNDAGVRIQFKPD------DG--TTPERIAQITGP-PDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp GGGHHHHHHHHHHCCEEEEECC------TT--SCSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhCCEEEEecC------CC--CCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 4578999999999999998531 11 222335678888 889999999999999875
No 288
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=69.13 E-value=4 Score=48.18 Aligned_cols=38 Identities=24% Similarity=0.059 Sum_probs=24.9
Q ss_pred HHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHH
Q 001264 481 TIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 481 ~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~ 520 (1112)
.|..+|. +++.+...+.. +..|..++++|+||||||+.
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3444552 23444444444 45788899999999999974
No 289
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=69.02 E-value=9.6 Score=38.38 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhccCCcCeEEEEEecCC-C------ccchhhcc--cchhhhhHHhhhCCeEeccceee
Q 001264 984 GAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDF-P------QNARWKVT--HKETLGPISEWTGAAITTRGQYF 1054 (1112)
Q Consensus 984 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~INd~-p------q~~R~~~t--~~~~~~~i~~~tg~~i~~kG~y~ 1054 (1112)
+...|..+.-++...-.......-..++.|...|+|+|| + ...+-.|- ++.|+..|...|||.|.+-|+
T Consensus 59 ~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-- 136 (191)
T 1tua_A 59 NLMKAAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY-- 136 (191)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS--
T ss_pred HHHHHHHHHHHHHcCCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC--
Confidence 445565555555442221111111124568888999998 3 23344443 567999999999999999663
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1055 PPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1055 ~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
.++|-| +...|+.|..-|..+|.
T Consensus 137 -------------~v~i~G-~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 137 -------------EVAIIG-DYERAMAAKQAIEMLAE 159 (191)
T ss_dssp -------------EEEEEE-EHHHHHHHHHHHHHHHT
T ss_pred -------------EEEEEe-ChHHHHHHHHHHHHHHc
Confidence 588888 56667888888888875
No 290
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.77 E-value=7.1 Score=46.11 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=51.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~ 782 (1112)
.+++||+||++.-+..++..+... ++.+..+||+.+...+...+. +...|||+|. .+..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888888777765 899999999997554432221 1377999993 22222 3 5667
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.58 E-value=6.1 Score=49.06 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999974
No 292
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=68.10 E-value=20 Score=36.91 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=49.4
Q ss_pred CcCeEEEEEecCC--Cc------cchhhc--ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHH
Q 001264 1010 PEHYEAELEINDF--PQ------NARWKV--THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSV 1079 (1112)
Q Consensus 1010 ~~~~~~~~~INd~--pq------~~R~~~--t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v 1079 (1112)
++.|..-|+|.++ +- .++-.| -.+.|+..|++.|||.|.+-| . .++|-| +...|
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------------~--~v~i~G-~~~~i 178 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG-------------K--TVAIIG-NPIQI 178 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-------------T--EEEEEE-CHHHH
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-------------e--EEEEEe-CHHHH
Confidence 3467777888887 42 233333 357899999999999999954 1 288888 56677
Q ss_pred HHHHHHHHHHHHH
Q 001264 1080 KRAKAELKRVLED 1092 (1112)
Q Consensus 1080 ~~a~~~i~~~~~e 1092 (1112)
+.|...|..+|..
T Consensus 179 ~~A~~~i~~li~g 191 (219)
T 2e3u_A 179 EIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999854
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.98 E-value=4.2 Score=41.80 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-+.-|..++..+..|.-+.++|+.|||||+.+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34567778888888998999999999999743
No 294
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.81 E-value=7 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
|.-+++.|++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688889999999975444443
No 295
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=67.73 E-value=12 Score=46.83 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cccc-C-CCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~G-l-Di~~ 782 (1112)
.+++||+||++.-+..++..|... ++.+..+||+.+...+...+. +...|||+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 578999999999998888877765 899999999997665433322 24789999931 2222 3 5667
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888885
No 296
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.52 E-value=4.2 Score=42.56 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=48.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc---cCCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR---GLDVKE 782 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~---GlDi~~ 782 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.....+ ......+...|||+|. .+.. ++++.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 37999999999999999888775 6777777765432211 1122345678999993 2222 477888
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 176 ~~~lVi 181 (245)
T 3dkp_A 176 VEWLVV 181 (245)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888875
No 297
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.26 E-value=14 Score=41.52 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=52.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+......... ..+...|+|+|. .+. ..+++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999999888888764 6788999999886543322 245688999993 222 34667888
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 298
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.01 E-value=5.9 Score=43.13 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=48.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-c-ccCCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-A-RGLDVKE 782 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~-~GlDi~~ 782 (1112)
.++||.||++.-|..++..+... ++.+..++|+....... ....+|||||.- + . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 37999999999999988887764 46777788776532211 345689999942 2 1 3577888
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 998885
No 299
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.99 E-value=6.7 Score=36.54 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcC-CeEEEEe-CCHHHHHHHHHHHHhcCCCeeeecCCCCH
Q 001264 703 RLLELLGEWYEK-GKILIFV-HSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 703 ~ll~~l~~~~~~-~~vLIF~-~s~~~~~~l~~~L~~~~~~~~~ihg~~~~ 750 (1112)
.+...+...... .++|||| .+-..+..++..|...|+++..|.||+..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444444445 6899999 57777888999999999999999999864
No 300
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.75 E-value=17 Score=40.90 Aligned_cols=73 Identities=12% Similarity=0.295 Sum_probs=53.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~ 782 (1112)
...++||.|+++.-+..++..+... ++.+..++|+...... +..+..+...|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3568999999999999988888764 6788888888875443 3445567789999993 222 3456777
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 301
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.45 E-value=24 Score=42.93 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=56.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..|..+...+.. .|+.+.+++|+.+..+... .+.. ...|+|||.- +.. -+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~~----GlDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LRE----GLDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----CST----TCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----hhC----Cccc
Confidence 56899999999988877665554 5788888898877655533 3443 4689999952 222 1578
Q ss_pred CCceEEEeccchhh
Q 001264 616 RRVTYLVMDEADRM 629 (1112)
Q Consensus 616 ~~i~~vViDEah~~ 629 (1112)
..+++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 88999999998863
No 302
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=65.34 E-value=5.6 Score=35.93 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=37.5
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCH
Q 001264 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~ 750 (1112)
+...+.......++||||.+-..+...+..|...|+++..|.||+..
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 33444444445689999999888999999999999999999998763
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=64.19 E-value=3.4 Score=41.19 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|+-++++||+|||||+.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999743
No 304
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=63.97 E-value=28 Score=42.43 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..|..+...+.. .|+.+.+++|+.+..+.. ..+..| .+|+|||.- +.. -+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~~----GlDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LRE----GLDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CCT----TCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hhc----CccC
Confidence 56899999999988877665554 578888889887765553 334443 689999942 221 1577
Q ss_pred CCceEEEeccchh
Q 001264 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
..+++||+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 8899999888775
No 305
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=63.85 E-value=7.6 Score=38.62 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=48.9
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
+...|.|.. ..+...+ ..+.++.+|++.|||.|.+-..- ..|...+ =.+.|.|.. .+|..|+..|..+|.
T Consensus 104 ~~~~i~Vp~--~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~----~~~~~~~--~~v~I~G~~-~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 104 NQVKIIVPN--STAGLIIGKGGATVKAIMEQSGAWVQLSQKP----DGINLQN--RVVTVSGEP-EQNRKAVELIIQKIQ 174 (178)
T ss_dssp GEEEEEEEH--HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------CCE--EEEEEESSH-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEch--hheeeeECCCcHHHHHHHHHHCCEEEEeCCC----CCCCCCc--eEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 455666654 3566666 45789999999999999874311 1122223 356788876 799999999999987
Q ss_pred H
Q 001264 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
+
T Consensus 175 e 175 (178)
T 2anr_A 175 E 175 (178)
T ss_dssp S
T ss_pred h
Confidence 5
No 306
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=63.75 E-value=9.1 Score=38.03 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=48.7
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccc--eeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRG--QYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG--~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~ 1088 (1112)
.|...|.|..- .+...+= .+.++.+|++.|||.|.+-. -++ |...++ .+.|.|. ...|.+|+..|.+
T Consensus 5 ~~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----~~~~er--~v~I~G~-~~~v~~A~~~I~~ 74 (178)
T 2anr_A 5 QYFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----PGTTER--VCLIQGT-IEALNAVHGFIAE 74 (178)
T ss_dssp CEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----TTSSEE--EEEEEEC-HHHHHHHHHHHHH
T ss_pred CEEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----CCCCCc--eEEEEeC-HHHHHHHHHHHHH
Confidence 45556666542 4555553 46899999999999998732 222 222334 4668886 7889999999988
Q ss_pred HHHH
Q 001264 1089 VLED 1092 (1112)
Q Consensus 1089 ~~~e 1092 (1112)
++.+
T Consensus 75 ~~~~ 78 (178)
T 2anr_A 75 KIRE 78 (178)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8765
No 307
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.45 E-value=14 Score=45.73 Aligned_cols=80 Identities=5% Similarity=-0.085 Sum_probs=55.0
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c---
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A--- 774 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~--- 774 (1112)
.++.++.....+.+++|.|+|..-|...+..+.. .|+.+.++.|+++...+.... .+.|+|+|+- +
T Consensus 104 f~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fD 177 (853)
T 2fsf_A 104 ATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFD 177 (853)
T ss_dssp HHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHH
Confidence 3344443334456899999999988777666544 489999999999986554432 3789999952 1
Q ss_pred --ccc-------CCCCCCcEEEE
Q 001264 775 --ARG-------LDVKELELVIN 788 (1112)
Q Consensus 775 --~~G-------lDi~~v~~VI~ 788 (1112)
..+ +...++.++|.
T Consensus 178 yLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 178 YLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHhhhhccHhHhcccCCcEEEE
Confidence 222 55677887774
No 308
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.35 E-value=39 Score=36.98 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
..++||.||+..-+..++..+... ++.+..++|+.........+. ..+|+|+|.- + ...+++..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccC
Confidence 458999999999999988888764 678899999988765544432 4789999932 1 123567778
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 149 ~~iIi 153 (367)
T 1hv8_A 149 KYFIL 153 (367)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 309
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.24 E-value=5.7 Score=53.26 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
|+-+.+.||.|||||+.++..+... .. .|..|+++.+--+|.... +.+ +|+.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~-~~-------~g~~~~~i~~e~~~~~~~---~~~----~Gv~~------------ 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA-QR-------EGKTCAFIDAEHALDPIY---ARK----LGVDI------------ 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HH-------TTCCEEEECTTSCCCHHH---HHH----TTCCG------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEecCCCCCHHH---HHH----cCCCH------------
Confidence 4668889999999998655444333 32 367788888876665432 333 44422
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC-----------------CchhHHHHHHhcC
Q 001264 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----------------FEPQITRIVQNIR 646 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~-----------------f~~~i~~il~~~~ 646 (1112)
..++|.-|..--..|..-. .+..-..+++||||.+-.|.... +...+.++...+.
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~-~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICD-ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHH-HHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHH-HHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 1245555543221111100 00112347899999988765321 1122344444444
Q ss_pred CCCcEEEEeccccHH
Q 001264 647 PDRQTVLFSATFPRQ 661 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~ 661 (1112)
...-+++|...+...
T Consensus 1556 ~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHTCEEEEEECBC--
T ss_pred hCCcEEEEeeccccc
Confidence 444566776665443
No 310
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=62.94 E-value=12 Score=36.45 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred EEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001264 1014 EAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e 1092 (1112)
...|.|..- .+...+ ..+.++.+|++.|||.|.+-.. +.+.-.+.|.|+ ...|..|+..|..+|.+
T Consensus 6 ~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~----------~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e 72 (160)
T 2jzx_A 6 TIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (160)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC----------TTTEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC----------CCCceEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 344444332 344444 4578999999999999998431 223346678897 88999999999999988
Q ss_pred HH
Q 001264 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
..
T Consensus 73 ~~ 74 (160)
T 2jzx_A 73 DI 74 (160)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 311
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=62.65 E-value=57 Score=31.94 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=58.5
Q ss_pred cccchhHHHHHHHHhhh-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001264 695 RPESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+...-...+...|... ...+.+.|.|.+...+..+...|...|+++..+.++.. .| ...|.|.|--
T Consensus 41 ~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~ 108 (174)
T 3dmn_A 41 PNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSF 108 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGG
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEcc
Confidence 33344445555555431 12468999999999999999999999999888776542 12 2469999998
Q ss_pred ccccCCCCCCcEEEEeCCC
Q 001264 774 AARGLDVKELELVINFDAP 792 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p 792 (1112)
.+-|+-+ +.||.+++.
T Consensus 109 ~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 109 LAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp GCTTCCE---EEEEEETCB
T ss_pred ccCCcCC---CEEEEecCC
Confidence 9999886 566666653
No 312
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=62.18 E-value=4.6 Score=45.40 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.3
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|..++++|+||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999973
No 313
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=62.05 E-value=12 Score=42.16 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++.-+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||.- +.. -.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gidi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CAR----GIDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTS----SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----ccc----CCCc
Confidence 45799999999999888777665 477889999998776553 33443 4689999952 222 2578
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 88888884
No 314
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.92 E-value=39 Score=37.94 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=53.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~ 782 (1112)
...++||.||++.-+..++..|... ++.+..++|+.........+. ....|+|+|. .+. ..++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3568999999999999998888764 577889999998766554432 2458999993 232 3466777
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888875
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.36 E-value=5.9 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
|.-++++||||||||+. +-.++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 44578889999999974 33344443
No 316
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.37 E-value=9.6 Score=38.53 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=34.8
Q ss_pred CCeEEEEeCCHHHHHH-HHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001264 714 KGKILIFVHSQEKCDA-LFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~-l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
.+++||+|++..-+.. +...+.. .++.+..++|+.....+...+. +...|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988877 5554444 3678999999765432221111 1467999983
No 317
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.33 E-value=16 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-+.++|++|||||+.+-
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4457788999999998543
No 318
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.14 E-value=32 Score=40.50 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=24.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|.-+++.|++|+|||+.+...+ ..+.. .|..++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~-g~~~~-------~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFV-ENACA-------NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHH-HHHHT-------TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH-HHHHh-------CCCCEEEEEEe
Confidence 45678888999999997544333 22221 24456676654
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=60.05 E-value=4.9 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|+-++++||+|+|||+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999743
No 320
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=60.04 E-value=4.4 Score=44.83 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++|+||||||||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357888999999997544
No 321
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=59.78 E-value=20 Score=44.37 Aligned_cols=80 Identities=6% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cc---
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VA--- 774 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~--- 774 (1112)
.++-++.....+..++|.|+|..-|...+..+.. .|+.+.++.|+++...+.... .+.|+|+|+ -+
T Consensus 113 f~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD 186 (844)
T 1tf5_A 113 STLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFD 186 (844)
T ss_dssp HHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHH
Confidence 3334343334456899999999988877766644 489999999999987665432 378999994 12
Q ss_pred --c-------ccCCCCCCcEEEE
Q 001264 775 --A-------RGLDVKELELVIN 788 (1112)
Q Consensus 775 --~-------~GlDi~~v~~VI~ 788 (1112)
. ..+....+.++|.
T Consensus 187 ~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 187 YLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp HHHHTTCSSGGGCCCCCCCEEEE
T ss_pred HHHHhhhcchhhhcccCCCEEEE
Confidence 1 2366678888774
No 322
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.77 E-value=13 Score=41.53 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
....+|+.||+|+|||+.+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999998543
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=59.54 E-value=4.8 Score=40.70 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.++.++++|++|||||+..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56778999999999998644
No 324
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=59.38 E-value=3.8 Score=40.43 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|++|||||++.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568889999999998543
No 325
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.29 E-value=31 Score=37.30 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-----c-ccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA-----A-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~-----~-~GlDi~~v 783 (1112)
..++||.||++.-+..++..|... ++.+..+||+.+....... +. ...|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999998888754 5789999999987654433 22 37899999321 1 23456677
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 326
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.04 E-value=5.7 Score=42.16 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=16.3
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999974
No 327
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.90 E-value=4.2 Score=44.47 Aligned_cols=18 Identities=33% Similarity=0.189 Sum_probs=14.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++|+||||||||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346778999999997544
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=58.21 E-value=3.8 Score=40.61 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.4
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
+.+..++++|++|||||++.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998544
No 329
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.04 E-value=5.3 Score=40.81 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566788899999999853
No 330
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=57.93 E-value=17 Score=35.48 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=44.4
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
+...+ ..+.++.+|++.|||.|.+--.- . ++..--.+.|.| +...|..|...|..+|.+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-----~--~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPE-----T--PDSKVRMVIITG-PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCS-----S--TTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCC-----C--CCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Confidence 44444 35689999999999999874321 1 233444678889 7899999999999988765
No 331
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.89 E-value=11 Score=44.31 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHH
Q 001264 495 AQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
..++-.+..+..+|+.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 45566677889999999999999974
No 332
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.77 E-value=4.7 Score=44.67 Aligned_cols=19 Identities=47% Similarity=0.622 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCChHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~ 519 (1112)
+..|..++++|+||||||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478899999999999997
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.68 E-value=5 Score=40.52 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=16.4
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~ 521 (1112)
+..|.-++++|++|||||+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345777889999999999753
No 334
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.24 E-value=4.6 Score=41.10 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|+-++++|+||+|||..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35668899999999996543
No 335
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.23 E-value=5.1 Score=40.42 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-+.++||+|||||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667888899999999843
No 336
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.08 E-value=6.8 Score=43.13 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
++..+..+..+++.|++|+|||..+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999743
No 337
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=61.77 E-value=2.2 Score=42.08 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDI 96 (170)
Confidence 45789999999988877766655 477888888887654432 33333 357899993 22211 466
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||+
T Consensus 97 ~~~~~Vi~ 104 (170)
T 2yjt_D 97 PDVSHVFN 104 (170)
Confidence 66777765
No 338
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.99 E-value=5.4 Score=40.56 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.7
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~ 521 (1112)
+.|+-++++||+|+|||+.+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46777899999999999753
No 339
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=56.77 E-value=21 Score=44.36 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh-------cCceEEEEeCCCChHHHHHHHh--------c-CCeEEEeCchHHHH
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------MGVRCVPVYGGSGVAQQISELK--------R-GTEIVVCTPGRMID 603 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~-------~~i~~~~~~gg~~~~~~~~~l~--------~-g~~IiV~Tp~~L~~ 603 (1112)
+..+||.||++.-+..++..+...+.. .++.+..++|+.+..++...+. . ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 458999999999999988888764322 4788999999998877754432 2 358999994
Q ss_pred HHHhcCCCccccCCceEEEe
Q 001264 604 ILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 604 ~l~~~~~~~~~l~~i~~vVi 623 (1112)
.+..+ .++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 33332 57778887773
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.74 E-value=4.6 Score=40.18 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|+.|||||++.-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668889999999998543
No 341
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.72 E-value=17 Score=38.62 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCChHHHH-HHHHHHHcCC-----CEEEEcCCCChHHHHHH
Q 001264 477 KIMETIRKLNYEKPMPIQA-QALPVIMSGR-----DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~-~ai~~il~g~-----dvii~a~TGsGKT~~~l 522 (1112)
.|.+.|+..||. |++. .++-.++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 567778878876 5553 3345555553 48888999999998655
No 342
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.31 E-value=15 Score=38.58 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=27.7
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 466 IKTWHQTGLTSKIMETIRKLN--YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~--~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-.+|.++.-...+.+.|..+- +..|..++.. .+...+.++++||+|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 357888776666665543210 0000000000 0012356999999999999753
No 343
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=56.24 E-value=14 Score=45.09 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=50.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc-C-CCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G-l-Di~~v 783 (1112)
+++||++|++.-+......|... ++.+..++|+.+.......+. . ..+|||+|. .+..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999988888888765 789999999986533222221 2 478999993 22233 3 57778
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88886
No 344
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=56.10 E-value=29 Score=43.20 Aligned_cols=63 Identities=8% Similarity=-0.001 Sum_probs=46.5
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001264 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
++.++.....+.+++|.|+|..-|...+..+.. .|+.|.++.|+++...+.... .++|+|+|+
T Consensus 110 ~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 110 TLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 334433334456899999999988777666544 589999999999977666553 378999994
No 345
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=56.00 E-value=6 Score=39.21 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
++.++++|++|||||++.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 346
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=55.75 E-value=5.7 Score=43.34 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++|+||||||||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6778999999997544
No 347
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=55.18 E-value=5 Score=39.03 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998543
No 348
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.71 E-value=28 Score=46.02 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.++||||+=--+|..-...+...+..+..++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999998888777777777777665555444443
No 349
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=54.50 E-value=12 Score=48.39 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=51.7
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCCcE
Q 001264 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
..++++||.+|++.-+...+..|......+..++|+++ .++...|||+| +.+..+ +.+.++.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 34679999999999999999999887668999999987 34678999999 344444 33567778
Q ss_pred EEE
Q 001264 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
||.
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=54.34 E-value=6.3 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.146 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++++|+||||||+.+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6788999999997543
No 351
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.23 E-value=55 Score=36.17 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++.-+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gidi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----LAR----GIDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----GSS----SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----hhc----CCCc
Confidence 56899999999998877776655 477888999998766543 34444 4689999952 222 2678
Q ss_pred CCceEEEeccch
Q 001264 616 RRVTYLVMDEAD 627 (1112)
Q Consensus 616 ~~i~~vViDEah 627 (1112)
..+.+||.-...
T Consensus 310 p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 PTVSMVVNYDLP 321 (395)
T ss_dssp TTEEEEEESSCC
T ss_pred ccCCEEEEcCCC
Confidence 889998875544
No 352
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=54.13 E-value=7.5 Score=43.44 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|.||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35667788887544 489999999764
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=54.12 E-value=7.6 Score=40.01 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=16.0
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..|.-+.++||+|||||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999974
No 354
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=53.45 E-value=27 Score=43.48 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=54.8
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cc----
Q 001264 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VA---- 774 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~---- 774 (1112)
++-++.....+.+++|.|+|..-|...+..+.. .|+.|.++.|+++...+.... .++|+++|+ -+
T Consensus 142 ~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDy 215 (922)
T 1nkt_A 142 VLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDY 215 (922)
T ss_dssp HHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHH
Confidence 333433334456899999999988777666544 489999999999987665443 378999995 11
Q ss_pred -c-------ccCCCCCCcEEEE
Q 001264 775 -A-------RGLDVKELELVIN 788 (1112)
Q Consensus 775 -~-------~GlDi~~v~~VI~ 788 (1112)
. ..+...++.++|.
T Consensus 216 LrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 216 LRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp HHHTTCSSGGGCCCCCCCEEEE
T ss_pred HHhhhhccHhhhccCCCCEEEE
Confidence 1 1356677777774
No 355
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=53.29 E-value=21 Score=45.37 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-c----cccc-C-CCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-V----AARG-L-DVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v----~~~G-l-Di~~ 782 (1112)
.+++||.||++.-+..++..|... ++.+..+||+.+...+...+. +..+|||+|. . +..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999999988888777764 899999999997654332221 1367999993 1 2222 3 5666
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788885
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.22 E-value=4 Score=43.08 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHH
Q 001264 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~ 520 (1112)
.|-.+|.++.....+...+..+-.. . -...++..+- -.+.++++||+|+|||+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3456788887666665555432110 0 0011222111 123489999999999974
No 357
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=52.90 E-value=2.2e+02 Score=29.60 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=85.2
Q ss_pred CcEEEEccch--hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH----hcCCeEEEeCch---HH---HHHHHhc
Q 001264 541 PVGLIMAPTR--ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL----KRGTEIVVCTPG---RM---IDILCTS 608 (1112)
Q Consensus 541 ~~~LIl~Ptr--eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l----~~g~~IiV~Tp~---~L---~~~l~~~ 608 (1112)
..+.|++|.. ....++...+...+...|+.+..+..+.....+...+ ..+++-||..|. .. +..+...
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ 85 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDA 85 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC
Confidence 3455566632 2344556667777777788877776655544333222 235554443322 12 2222221
Q ss_pred CCCcccc-----CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH-----HHHHHHHhcCCC-eEEE
Q 001264 609 GGKITNL-----RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ-----VEILARKVLNKP-VEIQ 677 (1112)
Q Consensus 609 ~~~~~~l-----~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~-----~~~l~~~~l~~p-~~i~ 677 (1112)
+..+..+ ..+.+|.+|...-. ......++..+...+.+.+++...... ..-+...+-..+ +.+
T Consensus 86 ~iPvV~~~~~~~~~~~~V~~D~~~~g-----~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~- 159 (291)
T 3l49_A 86 GIPLFTVDTATPHAINNTTSNNYSIG-----AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKI- 159 (291)
T ss_dssp TCCEEEESCCCTTCSEEEEECHHHHH-----HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEE-
T ss_pred CCcEEEecCCCCCcCceEecChHHHH-----HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE-
Confidence 1111111 12344444444421 223444555545667788887543221 122222222222 211
Q ss_pred ecCccccccCceEEEEec--ccchhHHHHHHHHhhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001264 678 VGGRSVVNKDITQLVEVR--PESDRFLRLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 678 ~~~~~~~~~~i~q~~~~~--~~~~k~~~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~~~ 739 (1112)
+... . +... ....-...+..+|... + .....|||.+-..+..+...|...|+
T Consensus 160 ~~~~-~--------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 160 IEPE-L--------RDVIPNTIQSAYSNVTDMLTKY-PNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp CSSC-B--------CCCSSSHHHHHHHHHHHHHHHC-CSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred Eeee-c--------cCCCCCCHHHHHHHHHHHHHhC-CCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 1100 0 0001 1112223344444432 2 15678899999999999999998887
No 358
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.70 E-value=15 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=47.7
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCe-EeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAA-ITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~-i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
.|...|.|+- ...+-.+- .+.++.+|.+.|||. |.+-- ++. .+.|.|++.+++++|+..|+.+
T Consensus 14 ~~i~~i~I~~--dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------ddG--~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 14 AFHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIELDE-----------DTG--TFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SEEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------TTT--EEEEEESSHHHHHHHHHHHSCC
T ss_pred ceEEEEEECh--HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------CCC--EEEEEECCHHHHHHHHHHHHhh
Confidence 4777888873 35666554 678999999999997 98831 112 4678899999999999988654
No 359
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.67 E-value=8.1 Score=38.53 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.6
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+-++++||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999974
No 360
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.37 E-value=9.7 Score=43.28 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.2
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
.+..++.|.++.| .|.||||||.+.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6677889987544 4899999998753
No 361
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=52.34 E-value=98 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.++++|.+|+|||+.+..
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477789999999975443
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.05 E-value=6.1 Score=44.56 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.7
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~ 520 (1112)
..|.-++++|+||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 363
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=51.76 E-value=8.6 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..++++|+.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457889999999999853
No 364
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.58 E-value=14 Score=38.22 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.++.|+|||+.++.-+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 477789999999987665555443
No 365
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=51.42 E-value=5.5 Score=39.26 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++|++|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567889999999998544
No 366
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=51.38 E-value=6.5 Score=39.16 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-++++|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566788899999999984
No 367
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.26 E-value=14 Score=51.93 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHH----HHHHHHHcCCCEEEEcCCCChHHHHHHH
Q 001264 474 LTSKIMETIRKLNYEKPMPIQA----QALPVIMSGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~----~ai~~il~g~dvii~a~TGsGKT~~~ll 523 (1112)
|...+.+.+...++. +++.+. |....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 345566677777764 555543 2233445678899999999999986543
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=51.26 E-value=9.5 Score=40.31 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=18.7
Q ss_pred HHHcCCCEEEEcCCCChHHHHHH
Q 001264 500 VIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~l 522 (1112)
..+.|..++++|++|||||+++-
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHH
Confidence 33458999999999999998544
No 369
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=50.93 E-value=9.5 Score=42.00 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001264 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..+..++.|.++ +..|+||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345567788874 44589999999864
No 370
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.81 E-value=54 Score=35.86 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.0
Q ss_pred HcCCC--EEEEcCCCChHHHHHH
Q 001264 502 MSGRD--CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~d--vii~a~TGsGKT~~~l 522 (1112)
..|+- +++.||.|+|||..+.
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHH
Confidence 34543 8999999999997543
No 371
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=50.77 E-value=3 Score=44.86 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=25.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--HcCCCEEEEcCCCChHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QALPVI--MSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~-~ai~~i--l~g~dvii~a~TGsGKT~~ 520 (1112)
|-.+|.+.+....+.+.|...-. .|+.. .++..+ .-.+.++++||.|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888876766666553110 12111 122211 1123499999999999974
No 372
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=50.70 E-value=9.2 Score=38.74 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~ 521 (1112)
+..|+-++++|++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999743
No 373
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.51 E-value=15 Score=43.01 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+.+++|.|.||||||.+.-.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 357899999999999975433
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.50 E-value=7.7 Score=42.65 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999997543
No 375
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.18 E-value=8.6 Score=39.09 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHcCCCEEEEcCCCChHHHH
Q 001264 500 VIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~ 520 (1112)
.+..|.-+.++||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566788888999999999974
No 376
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.96 E-value=9 Score=41.78 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5678999999999999753
No 377
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.94 E-value=6.4 Score=39.03 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|..++++|+.|||||++.-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45568889999999998544
No 378
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.37 E-value=10 Score=43.05 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
..+..++.|.++.| .|.||||||.+..
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 34566778877444 5899999998744
No 379
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=49.19 E-value=10 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666788887444 589999999764
No 380
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.16 E-value=10 Score=42.39 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45666788887544 489999999764
No 381
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.09 E-value=13 Score=33.29 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=34.3
Q ss_pred HhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCH
Q 001264 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQ 750 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~ 750 (1112)
+.......+++|||.+-..+..++..|...|+. +..|.||+..
T Consensus 52 ~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 52 MRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 333334568999999988889999999999995 8899998754
No 382
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=48.95 E-value=11 Score=42.06 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.+..++.|.++.| .|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4556678887444 489999999764
No 383
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.79 E-value=5.3 Score=42.81 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=29.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHH--cCCCEEEEcCCCChHHHH
Q 001264 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVIM--SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ-~~ai~~il--~g~dvii~a~TGsGKT~~ 520 (1112)
|-.+|.++.....+...+..+-. .+. ..++..+- -.+.++++||+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 45678888777766665554211 000 11121110 123489999999999974
No 384
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.76 E-value=10 Score=42.52 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556778887544 489999999764
No 385
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=48.65 E-value=12 Score=41.94 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34556778887544 589999999864
No 386
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=48.56 E-value=11 Score=41.84 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
..|..++.|.++. ..|+||||||.+.
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455667888754 4589999999864
No 387
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=48.44 E-value=8.9 Score=35.52 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHH--HHHHHHHHHhcCCCeeeecCCCCH
Q 001264 704 LLELLGEWYEKGKILIFVHSQEK--CDALFRDLLKHGYPCLSLHGAKDQ 750 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~--~~~l~~~L~~~~~~~~~ihg~~~~ 750 (1112)
|...+.......++||||.+-.. +..++..|...|+.+..|.||+..
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 33444444445689999998766 788999999999998899998753
No 388
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=48.27 E-value=11 Score=42.27 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556778887544 489999999764
No 389
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=48.11 E-value=11 Score=42.03 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.++
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34566778887444 589999999764
No 390
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=48.07 E-value=9.8 Score=37.84 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+..++++|++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 391
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=47.96 E-value=11 Score=42.14 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..|..++.|.++.| .|+||||||.++
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 35566778887544 489999999864
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.93 E-value=9 Score=42.40 Aligned_cols=17 Identities=35% Similarity=0.210 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++|+|+||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46778999999997543
No 393
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=47.92 E-value=7.7 Score=38.02 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-++++|+.|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999854
No 394
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=47.74 E-value=9 Score=38.53 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+-+|++||.|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 395
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=47.73 E-value=9.7 Score=42.56 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|+||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556778887544 489999999764
No 396
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=47.66 E-value=1.2e+02 Score=30.56 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=13.3
Q ss_pred EEEcCCCChHHHHHHHHHH
Q 001264 508 IGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l 526 (1112)
|+.+.-|.|||+..+..+.
T Consensus 5 v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHH
Confidence 4457899999986554443
No 397
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=47.56 E-value=11 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.3
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.+..++.|.++.| .|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4556678887444 589999999764
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=47.23 E-value=17 Score=39.13 Aligned_cols=22 Identities=18% Similarity=0.204 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp 524 (1112)
.|.-++++|++|+|||+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 5667888999999999754433
No 399
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=47.17 E-value=11 Score=42.08 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.7
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.+..++.|.++.| .|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556778887544 489999999864
No 400
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=47.16 E-value=11 Score=42.47 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34556678887444 489999999764
No 401
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=47.14 E-value=9.9 Score=36.86 Aligned_cols=17 Identities=12% Similarity=-0.257 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998544
No 402
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.99 E-value=10 Score=38.25 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|+.|||||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678889999999997533
No 403
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.94 E-value=12 Score=42.71 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.|..++.|.++.| .|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667788887544 489999999864
No 404
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=46.92 E-value=17 Score=40.59 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=24.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|+.|+|||+.++..+... ... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHC-------CCeEEEEeC
Confidence 35668888999999997654444433 321 345677764
No 405
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=46.89 E-value=13 Score=41.26 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=18.7
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.|..++.|.++.| .|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556778887544 489999999864
No 406
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=46.82 E-value=10 Score=33.44 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=32.7
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999999865
No 407
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=46.81 E-value=9.3 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.+..++.|.++.| .|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666788887544 489999999764
No 408
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.61 E-value=15 Score=42.64 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
++.+|+.||+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999997544
No 409
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=46.50 E-value=9.8 Score=42.36 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
..+..++.|.++.| .|+||||||.+.+
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 35667788887544 4899999998753
No 410
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.28 E-value=18 Score=47.85 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=28.2
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEe
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.+||||||=--+|..-...+...+..+..++-+|+.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45567899999987777666666777776666666444443
No 411
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=46.26 E-value=9 Score=37.55 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++++|+.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568889999999998543
No 412
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=46.08 E-value=29 Score=40.57 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=51.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC----CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-ccccc--CCCCCCcEE
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARG--LDVKELELV 786 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~----~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~G--lDi~~v~~V 786 (1112)
.+++||.||+..-+...+..|...+ ..+..+||+.+...+ ..+...|+|+|. .+... ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 4599999999999999999998752 367889998876543 357789999993 22222 345667777
Q ss_pred EEeCC
Q 001264 787 INFDA 791 (1112)
Q Consensus 787 I~~~~ 791 (1112)
|.=.+
T Consensus 230 IiDE~ 234 (510)
T 2oca_A 230 MNDEC 234 (510)
T ss_dssp EEETG
T ss_pred EEECC
Confidence 75333
No 413
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.66 E-value=12 Score=39.64 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+++.||+|+|||+.+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997543
No 414
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=45.53 E-value=9.6 Score=42.95 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=17.8
Q ss_pred HHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 498 LPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 498 i~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
+..++.|.++.| .|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 455678877444 589999999764
No 415
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=45.52 E-value=41 Score=34.89 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001264 697 ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
-..|-...+..+... .+++||+|++..-+..+...|...++. +..++|+.. ....|+|+|
T Consensus 118 G~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp STTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 345555554444442 579999999999999999998887888 888888764 256788888
No 416
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=45.47 E-value=10 Score=42.19 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=19.2
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
.+..++.|.++.| .|+||||||.+.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5556678887544 5899999998753
No 417
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=45.27 E-value=38 Score=32.28 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=46.4
Q ss_pred EEEEecCCCccchhhcc-cchhhhhHHhhhCC-eEeccceeeCCCCCCCCC-CCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1015 AELEINDFPQNARWKVT-HKETLGPISEWTGA-AITTRGQYFPPSRIAGPG-ERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1015 ~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~-~i~~kG~y~~~~~~~~~~-~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
++|.|.+. .+-..+- ++.++..|++.||| .|.+.+. .....+. ++.-=+.|.| +..+|+.|+.+|..+|.
T Consensus 69 ~~v~Vp~~--~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~----~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 69 DVIQVPRN--LVGKVIGKNGKLIQEIVDKSGVVRVRIEAE----NEKNVPQEEGMVPFVFVG-TKDSIANATVLLDYHLN 141 (144)
T ss_dssp EEEEEEGG--GHHHHHCGGGHHHHHHHHHHTCSEEEEEEE----CTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred EEEEECHH--HcCeeECCCCHHHHHHHHHHCCEEEEEcCC----CCCCccccCCeeEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 56666554 4444444 48899999999997 7876542 1111122 2322366778 66799999999998875
Q ss_pred H
Q 001264 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
.
T Consensus 142 ~ 142 (144)
T 2qnd_A 142 Y 142 (144)
T ss_dssp T
T ss_pred h
Confidence 3
No 418
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.25 E-value=11 Score=38.85 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~ 520 (1112)
+..|.-++++||.|||||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677888999999999974
No 419
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=45.17 E-value=33 Score=38.28 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
...++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 420
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=45.06 E-value=20 Score=35.30 Aligned_cols=23 Identities=22% Similarity=0.023 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
++++|+.|||||+. +..++..+.
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhhH
Confidence 66789999999974 334444443
No 421
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.01 E-value=9.7 Score=37.81 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|++|||||+++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4457888999999998644
No 422
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.96 E-value=11 Score=38.33 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001264 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
++.+... ..+..|.-++++|++|||||+.+-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3454444 334566778889999999997543
No 423
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=44.77 E-value=86 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH---cCCCEEEEcCCCChHHHHHH
Q 001264 492 PIQAQALPVIM---SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 492 ~iQ~~ai~~il---~g~dvii~a~TGsGKT~~~l 522 (1112)
..=..+|..++ .|+.+.++|++|+|||+...
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34445666655 68999999999999998554
No 424
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=44.73 E-value=23 Score=43.25 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=46.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
+.++||.||++.-+..++..+.. .++.+..++|. .....+..+.. ...|||||.- +..+ .++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv-----~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI-----SEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG-----GGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChH-HHHHHHHHHHCCCceEEEECch-----hhcc----eeeC-C
Confidence 56899999999998877776655 47888888884 34444444544 3689999942 3222 4566 6
Q ss_pred eEEE
Q 001264 619 TYLV 622 (1112)
Q Consensus 619 ~~vV 622 (1112)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6665
No 425
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=44.40 E-value=13 Score=42.66 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
..+..++.|.++.| .|.||||||.++
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 44556778887444 489999999764
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=44.35 E-value=12 Score=36.93 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-.+|+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999743
No 427
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.26 E-value=10 Score=42.89 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++|+||||||||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6778999999997543
No 428
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=44.11 E-value=18 Score=39.44 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-+.++|++|||||+.+-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567778999999997433
No 429
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=43.89 E-value=10 Score=33.63 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=32.5
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
...++||||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999988899999999999999999999865
No 430
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=43.87 E-value=31 Score=29.16 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=29.2
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 749 (1112)
...+++|||.+-..+..++..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988888999999999986 5555 7754
No 431
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=43.69 E-value=14 Score=41.61 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHHH
Q 001264 496 QALPVIMSGRDCI--GVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~l 522 (1112)
..+..++.|.++. ..|.||||||.+..
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3456677887744 45899999998754
No 432
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.53 E-value=21 Score=36.47 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHH
Q 001264 477 KIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|.+.|+-.++ .+... ..++..++.+ +.+|+.||.|+|||..+ +.++..
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 45555554443 23333 4445555554 24888899999999743 444444
No 433
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=43.50 E-value=23 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=32.6
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCH
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQ 750 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~ 750 (1112)
...++||||.+-..+..++..|...|+. +..|.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3468999999998999999999999995 8889998753
No 434
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=43.34 E-value=12 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|++|||||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46788999999998533
No 435
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.28 E-value=16 Score=31.72 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888999875
No 436
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.18 E-value=11 Score=37.98 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|++|||||+.+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45667788999999997543
No 437
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.11 E-value=13 Score=37.09 Aligned_cols=20 Identities=25% Similarity=0.141 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|+.|||||++.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678889999999998544
No 438
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=42.85 E-value=25 Score=40.24 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=39.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-g~~IiV~Tp 598 (1112)
+.++||+||++.-+..++..+... ++.+..++|+ .....+..+.. ..+|||||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999888777664 7888888876 33334444444 469999995
No 439
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.78 E-value=5.8 Score=48.74 Aligned_cols=70 Identities=19% Similarity=0.433 Sum_probs=47.5
Q ss_pred CeEEEEeCCHHHHHHH-HHHHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-ccc-----------ccC
Q 001264 715 GKILIFVHSQEKCDAL-FRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAA-----------RGL 778 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l-~~~L~~~~---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~-----------~Gl 778 (1112)
+++||.+|++.-+..+ +..|.... +.+..+||+.+...+...+. +..+|||+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 77777653 89999999987654333322 4688999993 222 235
Q ss_pred CCCCCcEEEE
Q 001264 779 DVKELELVIN 788 (1112)
Q Consensus 779 Di~~v~~VI~ 788 (1112)
.+..+.+||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6777888885
No 440
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=42.74 E-value=11 Score=33.72 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=32.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...||.++.+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4568999999888888899999999999988888864
No 441
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=42.60 E-value=24 Score=40.57 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
+.++||.||++.-|..++..+... ++.+.+++|. .....+..+..| ..|+|||.- +..+ .++. +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v-----~e~G----iDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI-----AEMG----ANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESSS-----TTCC----TTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh-----hhee----eccC-c
Confidence 457999999999999888777663 7888888884 333444455443 699999952 2221 4666 7
Q ss_pred eEEE
Q 001264 619 TYLV 622 (1112)
Q Consensus 619 ~~vV 622 (1112)
++||
T Consensus 242 ~~VI 245 (440)
T 1yks_A 242 ERVL 245 (440)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7766
No 442
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=42.52 E-value=9.5 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=11.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-+.++||+|||||+.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667888999999999753
No 443
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.27 E-value=13 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++++|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999998543
No 444
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=42.26 E-value=10 Score=37.64 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|+.|||||++.-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457888999999998543
No 445
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.21 E-value=13 Score=36.85 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.7
Q ss_pred CEEEEcCCCChHHHH
Q 001264 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
.+.++|+.|||||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 446
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.88 E-value=11 Score=38.06 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|+.|||||++.-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 45568889999999998543
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.82 E-value=15 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.8
Q ss_pred CEEEEcCCCChHHHH
Q 001264 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
-.+|+||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999975
No 448
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=41.78 E-value=3.2e+02 Score=28.44 Aligned_cols=27 Identities=7% Similarity=-0.102 Sum_probs=23.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
.....|||.+-..+..+...|...|+.
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 186 PNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred CCceEEEECCCcchhhHHHHHHhcCCC
Confidence 457899999999999999999888763
No 449
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=41.76 E-value=11 Score=37.93 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|+.|||||++.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45668889999999998543
No 450
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.69 E-value=15 Score=37.27 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=15.8
Q ss_pred CEEEEcCCCChHHHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l 526 (1112)
-.+++|+.|||||+.++.-++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 468899999999986544333
No 451
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=41.68 E-value=68 Score=35.71 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=51.2
Q ss_pred cCeEEEEEecCCCccchhhcccc---hhhhhHHhhhCCeEeccceeeCCCCCCCC-CCCceEEEEEeCCHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVTHK---ETLGPISEWTGAAITTRGQYFPPSRIAGP-GERKLYLFIEGPTEQSVKRAKAEL 1086 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~---~~~~~i~~~tg~~i~~kG~y~~~~~~~~~-~~~~Lyl~ie~~~~~~v~~a~~~i 1086 (1112)
..|..+|+|+ |+.....+-++ .++..|.+.|||.|. ||....+.. .+.+--+.|.| +...|..|...|
T Consensus 184 ~~~s~~v~V~--~~~H~~IIGk~G~n~~IkkIr~eTGv~I~-----FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I 255 (376)
T 3n89_A 184 NNFTLHFTLS--TYYVDQVLGSSSTAQLMPVIERETTTIIS-----YPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYI 255 (376)
T ss_dssp SCEEEEEEEE--GGGHHHHTCCTTSCCHHHHHHHHHTCEEE-----CC---------CCEEEEEEES-CHHHHHHHHHHH
T ss_pred cceEEEEEeC--HHHHHHhhcCCCcchHHHHHHHhhCCEEE-----CCCCCCcccccCCceEEEEEe-CHHHHHHHHHHH
Confidence 4588888887 45677777777 467999999999998 454332221 23455688999 999999999999
Q ss_pred HHHH
Q 001264 1087 KRVL 1090 (1112)
Q Consensus 1087 ~~~~ 1090 (1112)
..+|
T Consensus 256 ~~lL 259 (376)
T 3n89_A 256 MDLL 259 (376)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 8875
No 452
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=41.67 E-value=12 Score=41.97 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=18.9
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~ 521 (1112)
.+..++.|.++.| .|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666778887544 489999999764
No 453
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.64 E-value=19 Score=51.42 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHH---HHHHcCCCEEEEcCCCChHHHHHH
Q 001264 474 LTSKIMETIRKLNYEKPMPIQA-QAL---PVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~-~ai---~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
|...|...+..+|+ .|++.+. .++ ..+...+.++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34556667777887 4555544 333 233466779999999999998754
No 454
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.15 E-value=15 Score=39.62 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..++++||+|+|||+.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997543
No 455
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=40.76 E-value=43 Score=40.77 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=52.1
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH---HHHHHHhc---CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKR---GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~---g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..+|+|+|+.-+..++..+.. .++.+..++|+.+.. .+...+.. ..+|||||.- +..+ .++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-----~e~G----lDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-----IGMG----LNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-----GGSS----CCC
T ss_pred CCEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-----HHCC----cCc
Confidence 346778988877776666655 478899999999877 45556664 3699999952 3222 567
Q ss_pred CCceEEEeccchhh
Q 001264 616 RRVTYLVMDEADRM 629 (1112)
Q Consensus 616 ~~i~~vViDEah~~ 629 (1112)
.+.+||+-...+.
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 7889988777653
No 456
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=40.70 E-value=25 Score=41.74 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
..+++|.|.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999975444444433
No 457
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=40.68 E-value=46 Score=43.55 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=44.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCC----CCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+|.|.-|||||.+...-++..|...... ..-.-..+|+|+=|+..|..+...|...+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999999888888888642100 001234799999999999998888776543
No 458
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=40.65 E-value=16 Score=36.65 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=25.2
Q ss_pred cCCceEEEeccchhh--hcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 615 LRRVTYLVMDEADRM--FDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~--~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+....+|||||+..| .+..|...+..++... ..+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 466789999998877 3444555555555432 2345446665
No 459
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=40.57 E-value=16 Score=40.73 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=15.3
Q ss_pred cCCC--EEEEcCCCChHHHHHH
Q 001264 503 SGRD--CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~d--vii~a~TGsGKT~~~l 522 (1112)
.|.+ ++..|+||||||.+.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 4666999999998643
No 460
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.28 E-value=9.9 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-+.++|++|||||+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999997543
No 461
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=40.22 E-value=24 Score=42.83 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=40.7
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp 598 (1112)
.+.++||.|+|+.-+..++..+.. .++.+..++|+....+ ....+..|||+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~e---r~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSV---IPTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGG---SCSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHH---HHhCCCcEEEECC
Confidence 356799999999999887776654 4788999999987653 1234569999995
No 462
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.16 E-value=83 Score=27.73 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=43.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001264 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
.+||...-+....+...++..|+.+++++++.+...|..-++.|...-..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 46788888888889999999999999999999999999999999865433
No 463
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=40.10 E-value=37 Score=39.07 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=53.6
Q ss_pred chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCCHHHHHHHHHHhhcCCccEEEecC-ccc
Q 001264 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~ 775 (1112)
..|....+..+... ..++||+||++.-+......|...++. +..+||+... ...|+|+|. .+.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~ 183 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAY 183 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHH
Confidence 45555544444443 579999999999999999999888888 9999998752 467999993 222
Q ss_pred ccCC-C-CCCcEEEE
Q 001264 776 RGLD-V-KELELVIN 788 (1112)
Q Consensus 776 ~GlD-i-~~v~~VI~ 788 (1112)
.-++ + ..+.+||.
T Consensus 184 ~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 184 VNAEKLGNRFMLLIF 198 (472)
T ss_dssp HTHHHHTTTCSEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 2221 1 34677775
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=40.05 E-value=15 Score=37.51 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|+.||+||||++++-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678899999999865543
No 465
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.95 E-value=23 Score=38.53 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-+.++|++|+|||+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34557788999999998543
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.92 E-value=95 Score=30.63 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=36.2
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh
Q 001264 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK 588 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~ 588 (1112)
+.-|+|||+..+..+..... .|.++|++= |...+.. |.. ....++.+... +.......+..+.
T Consensus 9 ~kgG~GKTt~a~~la~~la~--------~g~~vlliD~D~~~~~~~-~~~-----~~~~~~~~~~~-~~~~l~~~l~~l~ 73 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR--------SGYNIAVVDTDPQMSLTN-WSK-----AGKAAFDVFTA-ASEKDVYGIRKDL 73 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH--------TTCCEEEEECCTTCHHHH-HHT-----TSCCSSEEEEC-CSHHHHHTHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHH--------CCCeEEEEECCCCCCHHH-HHh-----cCCCCCcEEec-CcHHHHHHHHHhc
Confidence 57899999865544443322 245566654 4333322 111 11223433322 2222233345555
Q ss_pred cCCeE-EEeCchHH
Q 001264 589 RGTEI-VVCTPGRM 601 (1112)
Q Consensus 589 ~g~~I-iV~Tp~~L 601 (1112)
..+++ ||=||+.+
T Consensus 74 ~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL 87 (206)
T ss_dssp TTSSEEEEECCSSS
T ss_pred CCCCEEEEECCCCC
Confidence 56654 45577654
No 467
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.16 E-value=13 Score=38.82 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCChHHH
Q 001264 503 SGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~ 519 (1112)
.|.-+.++||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46668889999999997
No 468
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.14 E-value=11 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.|.-++++|+.|||||++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999853
No 469
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=39.10 E-value=15 Score=35.53 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
+.++++|..|||||++.-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688899999999986543
No 470
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=39.04 E-value=15 Score=41.10 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-.+|+|+||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999998653
No 471
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.91 E-value=15 Score=37.49 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-+.++|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999998544
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.88 E-value=15 Score=38.06 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+..++++|++|||||++.-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688899999999986443
No 473
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.88 E-value=13 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.5
Q ss_pred CCCEEEEcCCCChHHHH
Q 001264 504 GRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~ 520 (1112)
|.-+.|+|++|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44566789999999974
No 474
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=38.57 E-value=4.3e+02 Score=28.95 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=46.8
Q ss_pred CcEEEEccc-h---hHHHHHHHHHHHHhhhcC--ceEEEEeCCCChH---HHHHH-HhcCCeEEEeCchHHHHHHHhcCC
Q 001264 541 PVGLIMAPT-R---ELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVA---QQISE-LKRGTEIVVCTPGRMIDILCTSGG 610 (1112)
Q Consensus 541 ~~~LIl~Pt-r---eLa~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~---~~~~~-l~~g~~IiV~Tp~~L~~~l~~~~~ 610 (1112)
.++-+|+|. . ..-..+..-+.++.+.+| +.+..+....... ..+.. +..++++||++...+.+.+..-.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA- 105 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVA- 105 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHH-
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH-
Confidence 345555563 2 344556677777877788 7766554433221 22333 34689999998766655553321
Q ss_pred CccccCCceEEEecc
Q 001264 611 KITNLRRVTYLVMDE 625 (1112)
Q Consensus 611 ~~~~l~~i~~vViDE 625 (1112)
..+.++.++++|-
T Consensus 106 --~~~Pdv~fv~id~ 118 (356)
T 3s99_A 106 --KKFPDVKFEHATG 118 (356)
T ss_dssp --TTCTTSEEEEESC
T ss_pred --HHCCCCEEEEEec
Confidence 1234567787774
No 475
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.33 E-value=18 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|+.|||||+.+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999998544
No 476
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.21 E-value=17 Score=37.54 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
.+-+|+.||.||||++++-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34577789999999986544
No 477
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.19 E-value=16 Score=37.03 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
++++|+.|||||++.-.
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999986443
No 478
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.01 E-value=17 Score=36.23 Aligned_cols=20 Identities=20% Similarity=0.141 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.-++++|++|||||++.-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568889999999998543
No 479
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=37.86 E-value=16 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.222 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998543
No 480
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=37.86 E-value=12 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-+|++|++|||||+.+-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999997533
No 481
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.68 E-value=16 Score=35.98 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|+.|||||++.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998544
No 482
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=37.66 E-value=14 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.149 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
+.++|+.|||||++.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999853
No 483
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=37.62 E-value=20 Score=35.31 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++++|+.|||||++.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998543
No 484
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.61 E-value=17 Score=40.01 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..++++||+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999743
No 485
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.56 E-value=17 Score=37.13 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++|+.|||||++.-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3467889999999998644
No 486
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=37.43 E-value=21 Score=39.09 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.2
Q ss_pred EEEEcCCCChHHHH
Q 001264 507 CIGVAKTGSGKTLA 520 (1112)
Q Consensus 507 vii~a~TGsGKT~~ 520 (1112)
++++|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999974
No 487
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.41 E-value=19 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
..++++|+.|||||++.-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999986443
No 488
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=37.25 E-value=16 Score=37.50 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.-++++|++|||||++.-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568889999999998543
No 489
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.19 E-value=48 Score=36.28 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=11.9
Q ss_pred EEEEcCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
+.++|++|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 555699999999753
No 490
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=37.10 E-value=3.7e+02 Score=27.73 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001264 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~ 739 (1112)
.+..+|... .....|||.+-..+..+...|...|+
T Consensus 185 ~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 185 VMRQVIDSG--IPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHTT--CCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC--CCCCEEEECCchHHHHHHHHHHhCCC
Confidence 344444432 34678999999999999999998876
No 491
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=36.92 E-value=34 Score=39.51 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=19.5
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
+..|+.++++|+.|+|||..+...+
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHH
Confidence 4578889999999999997544333
No 492
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=36.87 E-value=18 Score=36.81 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|+.|||||++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 493
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.83 E-value=18 Score=35.05 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
+-++++|+.|||||++.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999998543
No 494
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.82 E-value=16 Score=36.15 Aligned_cols=20 Identities=30% Similarity=0.175 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|..|||||+..-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567888999999998544
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.79 E-value=18 Score=36.18 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++++|++|||||+..-
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6788999999998543
No 496
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=36.76 E-value=29 Score=42.56 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=56.6
Q ss_pred chhHHHH-HHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-
Q 001264 698 SDRFLRL-LELLGEWYEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS- 772 (1112)
Q Consensus 698 ~~k~~~l-l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~---~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~- 772 (1112)
..|.... +.++.....++++||.+|++.-+..++..+.. .|+.+..++|+.....+ .-+..+|+|+|.
T Consensus 51 sGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHH
Confidence 3444333 33333333467999999999999999888843 37899999998765432 124688999994
Q ss_pred ----cccccCC-CCCCcEEEE
Q 001264 773 ----VAARGLD-VKELELVIN 788 (1112)
Q Consensus 773 ----v~~~GlD-i~~v~~VI~ 788 (1112)
.+..+.. +.++.+||.
T Consensus 124 ~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 124 KADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHcChhHHhhcCEEEE
Confidence 2333333 667888885
No 497
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=36.72 E-value=59 Score=39.80 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh--------------------------------cCceEEEEeCCCChHHHHHH-
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKV--------------------------------MGVRCVPVYGGSGVAQQISE- 586 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~--------------------------------~~i~~~~~~gg~~~~~~~~~- 586 (1112)
+..+||.||++.-+..++..+...+.. +...+..++||.+..++...
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567899999999999888877764321 12347888999887665422
Q ss_pred --Hhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 587 --LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 587 --l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+.. ...|||||.- +..+ .++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~~-----l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATPT-----LAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECGG-----GGGS----SCCCBSEEEECC
T ss_pred HHHHcCCCeEEEEChH-----Hhcc----cCCCceEEEEeC
Confidence 333 4689999942 2222 577788887654
No 498
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=36.66 E-value=17 Score=39.49 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.|+||+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999974
No 499
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=36.51 E-value=16 Score=37.05 Aligned_cols=23 Identities=22% Similarity=-0.159 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.|.-+.++|++|||||+.+-+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
No 500
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.01 E-value=15 Score=35.44 Aligned_cols=15 Identities=20% Similarity=-0.029 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
++++|..|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEESCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Done!