Query 001264
Match_columns 1112
No_of_seqs 888 out of 5482
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 19:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001264.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001264hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0sa1 c.37.1.19 (A:22-243) P 100.0 4.2E-40 3.1E-44 348.7 22.1 209 463-679 13-221 (222)
2 d1veca_ c.37.1.19 (A:) DEAD bo 100.0 5.8E-38 4.3E-42 329.6 25.1 203 466-676 2-205 (206)
3 d2g9na1 c.37.1.19 (A:21-238) I 100.0 4.1E-38 3E-42 333.1 21.3 211 461-679 6-217 (218)
4 d1qdea_ c.37.1.19 (A:) Initiat 100.0 8.2E-38 5.9E-42 329.6 23.4 211 459-678 2-212 (212)
5 d1wrba1 c.37.1.19 (A:164-401) 100.0 1.8E-37 1.3E-41 332.9 22.6 216 461-679 15-238 (238)
6 d1t6na_ c.37.1.19 (A:) Spliceo 100.0 3.8E-37 2.8E-41 323.6 22.7 204 467-678 1-207 (207)
7 d1hv8a1 c.37.1.19 (A:3-210) Pu 100.0 8.7E-36 6.3E-40 313.8 24.0 203 466-678 3-206 (208)
8 d1s2ma1 c.37.1.19 (A:46-251) P 100.0 1.7E-35 1.2E-39 311.3 22.5 205 467-679 1-205 (206)
9 d1q0ua_ c.37.1.19 (A:) Probabl 100.0 1.9E-33 1.4E-37 296.8 20.4 204 467-678 1-208 (209)
10 d2bmfa2 c.37.1.14 (A:178-482) 100.0 4.2E-33 3.1E-37 311.8 14.6 273 501-821 6-300 (305)
11 d1fuka_ c.37.1.19 (A:) Initiat 99.9 2.3E-28 1.7E-32 245.3 12.8 158 688-846 1-159 (162)
12 d1s2ma2 c.37.1.19 (A:252-422) 99.9 1.2E-27 8.5E-32 242.9 18.0 160 684-844 3-162 (171)
13 d2j0sa2 c.37.1.19 (A:244-411) 99.9 4.9E-28 3.6E-32 244.2 15.1 160 684-844 4-164 (168)
14 d1hv8a2 c.37.1.19 (A:211-365) 99.9 8.6E-27 6.3E-31 232.6 18.1 149 685-835 1-149 (155)
15 d2rb4a1 c.37.1.19 (A:307-474) 99.9 3.4E-26 2.5E-30 230.8 17.5 156 685-841 3-165 (168)
16 d1t5ia_ c.37.1.19 (A:) Spliceo 99.9 2E-26 1.5E-30 232.6 15.8 156 688-844 2-158 (168)
17 d1oywa3 c.37.1.19 (A:207-406) 99.9 4.3E-25 3.2E-29 228.4 16.9 142 686-830 5-146 (200)
18 d1gkub1 c.37.1.16 (B:1-250) He 99.9 1.8E-25 1.3E-29 239.9 10.0 188 468-671 23-228 (237)
19 d1oywa2 c.37.1.19 (A:1-206) Re 99.9 9.8E-25 7.1E-29 228.9 11.6 189 468-674 3-202 (206)
20 d2p6ra3 c.37.1.19 (A:1-202) He 99.9 3.1E-24 2.3E-28 224.3 11.5 184 474-674 10-196 (202)
21 d1c4oa2 c.37.1.19 (A:410-583) 99.9 5.3E-23 3.9E-27 204.8 17.9 125 695-820 11-141 (174)
22 d1t5la2 c.37.1.19 (A:415-595) 99.9 5.1E-23 3.7E-27 208.5 17.5 125 695-820 11-141 (181)
23 d1wp9a1 c.37.1.19 (A:1-200) pu 99.8 6E-21 4.4E-25 198.6 18.2 166 488-665 8-173 (200)
24 d1gm5a4 c.37.1.19 (A:550-755) 99.8 3.3E-23 2.4E-27 213.2 0.4 167 698-897 12-191 (206)
25 d2eyqa5 c.37.1.19 (A:779-989) 99.8 6.5E-21 4.8E-25 193.4 16.3 163 704-895 20-188 (211)
26 d1jr6a_ c.37.1.14 (A:) HCV hel 99.8 1E-21 7.5E-26 189.7 6.7 101 712-822 33-137 (138)
27 d2eyqa3 c.37.1.19 (A:546-778) 99.8 2.8E-18 2E-22 179.3 20.2 170 475-666 41-221 (233)
28 d1wp9a2 c.37.1.19 (A:201-486) 99.8 4.2E-19 3.1E-23 195.3 13.3 124 698-822 142-276 (286)
29 d1gm5a3 c.37.1.19 (A:286-549) 99.8 1.6E-18 1.2E-22 184.6 17.0 171 478-672 73-253 (264)
30 d2p6ra4 c.37.1.19 (A:203-403) 99.7 1.8E-17 1.3E-21 171.2 11.1 110 713-822 39-187 (201)
31 d1a1va2 c.37.1.14 (A:326-624) 99.7 1.6E-17 1.2E-21 175.6 7.8 107 713-820 35-154 (299)
32 d1gkub2 c.37.1.16 (B:251-498) 99.7 3E-19 2.2E-23 192.0 -6.4 118 696-825 9-131 (248)
33 d1rifa_ c.37.1.23 (A:) DNA hel 99.7 6.8E-17 4.9E-21 176.1 10.1 154 488-661 112-265 (282)
34 d2fwra1 c.37.1.19 (A:257-456) 99.7 7E-17 5.1E-21 167.4 9.6 118 698-821 78-198 (200)
35 d2fz4a1 c.37.1.19 (A:24-229) D 99.6 4.3E-16 3.1E-20 162.0 13.6 136 489-658 70-205 (206)
36 d1yksa1 c.37.1.14 (A:185-324) 99.6 3.9E-16 2.8E-20 151.3 6.3 135 502-659 5-140 (140)
37 d1a1va1 c.37.1.14 (A:190-325) 99.5 3.7E-15 2.7E-19 144.1 6.3 127 504-658 8-136 (136)
38 d1z3ix1 c.37.1.19 (X:390-735) 99.4 4.9E-13 3.5E-17 148.9 17.0 121 697-817 99-224 (346)
39 d1z5za1 c.37.1.19 (A:663-906) 99.4 5.9E-13 4.3E-17 141.8 13.1 125 697-821 67-197 (244)
40 d1yksa2 c.37.1.14 (A:325-623) 99.4 5.7E-13 4.1E-17 144.0 11.5 102 714-820 36-156 (299)
41 d1z3ix2 c.37.1.19 (X:92-389) R 99.3 1.3E-11 9.6E-16 135.3 17.8 160 489-659 55-231 (298)
42 d1tf5a4 c.37.1.19 (A:396-570) 99.2 1.7E-10 1.3E-14 112.4 14.6 128 694-823 13-149 (175)
43 d1z63a1 c.37.1.19 (A:432-661) 99.1 2.1E-10 1.5E-14 120.6 11.2 148 489-659 12-163 (230)
44 d1tf5a3 c.37.1.19 (A:1-226,A:3 98.8 7.1E-08 5.2E-12 99.6 17.4 170 485-670 77-264 (273)
45 d1nkta3 c.37.1.19 (A:-15-225,A 98.6 1.8E-07 1.3E-11 96.9 13.9 169 485-669 94-278 (288)
46 d1nkta4 c.37.1.19 (A:397-615) 98.5 7.1E-07 5.2E-11 87.8 15.3 128 693-823 12-193 (219)
47 d1k1ga_ d.51.1.1 (A:) RNA spli 98.1 2.5E-06 1.8E-10 77.8 7.3 77 1017-1093 9-96 (122)
48 d1w36d1 c.37.1.19 (D:2-360) Ex 97.8 2.3E-05 1.7E-09 86.3 10.7 148 488-657 147-297 (359)
49 d1ls1a2 c.37.1.10 (A:89-295) G 97.0 0.0023 1.6E-07 64.0 12.0 131 507-670 13-146 (207)
50 d2qy9a2 c.37.1.10 (A:285-495) 96.7 0.0043 3.1E-07 61.9 11.9 65 507-582 12-78 (211)
51 d1uaaa1 c.37.1.19 (A:2-307) DE 96.7 0.00084 6.1E-08 71.6 6.8 70 489-564 1-70 (306)
52 d1gm5a3 c.37.1.19 (A:286-549) 96.7 0.0034 2.5E-07 64.9 11.2 98 704-803 122-224 (264)
53 d1okkd2 c.37.1.10 (D:97-303) G 96.6 0.0046 3.3E-07 61.6 10.9 67 505-582 7-75 (207)
54 d2bl5a1 d.51.1.1 (A:1-134) Qua 96.5 0.00049 3.6E-08 63.0 2.9 75 1017-1091 8-100 (134)
55 d1vmaa2 c.37.1.10 (A:82-294) G 96.5 0.0054 4E-07 61.3 11.0 64 507-580 14-78 (213)
56 d1pjra1 c.37.1.19 (A:1-318) DE 96.2 0.0049 3.6E-07 65.9 9.3 71 489-565 11-81 (318)
57 d2eyqa3 c.37.1.19 (A:546-778) 96.2 0.019 1.4E-06 58.0 12.8 103 698-802 87-195 (233)
58 d1j8yf2 c.37.1.10 (F:87-297) G 96.1 0.014 1E-06 58.0 11.6 170 507-723 15-189 (211)
59 d1a5ta2 c.37.1.20 (A:1-207) de 95.6 0.015 1.1E-06 58.1 8.9 40 490-530 3-49 (207)
60 d1x4na1 d.51.1.1 (A:8-86) Far 95.1 0.023 1.6E-06 47.0 7.1 71 1012-1093 7-78 (79)
61 d1zzka1 d.51.1.1 (A:11-85) HnR 95.0 0.029 2.1E-06 45.8 7.5 70 1013-1093 4-74 (75)
62 d1t5la1 c.37.1.19 (A:2-414) Nu 94.9 0.015 1.1E-06 64.1 6.9 67 489-566 11-82 (413)
63 d2ctea1 d.51.1.1 (A:8-88) Vigi 94.7 0.035 2.5E-06 46.1 7.2 71 1011-1094 8-79 (81)
64 d1xx6a1 c.37.1.24 (A:2-142) Th 94.7 0.047 3.4E-06 50.4 8.9 39 504-550 7-45 (141)
65 d1njfa_ c.37.1.20 (A:) delta p 94.5 0.27 1.9E-05 49.5 15.4 49 467-531 9-60 (239)
66 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 94.4 0.036 2.6E-06 64.7 9.5 72 488-565 10-81 (623)
67 d2ctka1 d.51.1.1 (A:8-98) Vigi 94.4 0.04 2.9E-06 46.8 7.1 70 1013-1095 10-80 (91)
68 d2b8ta1 c.37.1.24 (A:11-149) T 94.3 0.08 5.8E-06 48.7 9.6 87 507-629 5-91 (139)
69 d2ctla1 d.51.1.1 (A:8-91) Vigi 94.2 0.046 3.3E-06 45.7 7.0 72 1012-1093 9-81 (84)
70 d2ctma1 d.51.1.1 (A:8-88) Vigi 94.2 0.076 5.5E-06 43.9 8.2 72 1011-1094 8-80 (81)
71 d1l8qa2 c.37.1.20 (A:77-289) C 94.1 0.061 4.4E-06 53.6 8.9 45 616-660 96-142 (213)
72 d1sxje2 c.37.1.20 (E:4-255) Re 93.8 0.046 3.4E-06 55.6 7.6 49 468-529 9-57 (252)
73 d1ixza_ c.37.1.20 (A:) AAA dom 93.6 0.31 2.3E-05 49.3 13.5 53 466-521 5-59 (247)
74 d1xbta1 c.37.1.24 (A:18-150) T 93.6 0.075 5.5E-06 48.5 7.7 38 506-551 4-41 (133)
75 d2gnoa2 c.37.1.20 (A:11-208) g 93.4 0.1 7.5E-06 51.2 9.0 115 494-658 2-119 (198)
76 d1j4wa2 d.51.1.1 (A:104-174) F 93.1 0.07 5.1E-06 42.9 5.9 59 1026-1090 12-71 (71)
77 d1dtja_ d.51.1.1 (A:) Neuro-on 92.8 0.096 7E-06 42.4 6.4 59 1026-1090 14-73 (74)
78 d1x4ma1 d.51.1.1 (A:8-88) Far 92.5 0.081 5.9E-06 43.7 5.7 75 1009-1092 4-79 (81)
79 d2eyqa5 c.37.1.19 (A:779-989) 92.3 0.11 8.2E-06 50.9 7.3 92 539-645 30-125 (211)
80 d2axya1 d.51.1.1 (A:11-81) Pol 92.3 0.11 7.9E-06 41.7 6.1 51 1031-1092 21-71 (71)
81 d1we8a_ d.51.1.1 (A:) Tudor an 92.3 0.13 9.2E-06 44.7 6.9 73 1013-1094 15-88 (104)
82 d1lv7a_ c.37.1.20 (A:) AAA dom 92.2 0.13 9.4E-06 52.6 8.1 53 466-521 8-62 (256)
83 d1j4wa1 d.51.1.1 (A:1-74) Far 92.2 0.15 1.1E-05 41.1 6.9 54 1031-1093 20-73 (74)
84 d1d2na_ c.37.1.20 (A:) Hexamer 91.6 0.5 3.6E-05 47.7 11.8 17 505-521 41-57 (246)
85 d1wvna1 d.51.1.1 (A:5-74) Poly 91.3 0.18 1.3E-05 40.2 6.4 65 1015-1090 4-69 (70)
86 d1sxjc2 c.37.1.20 (C:12-238) R 91.1 0.33 2.4E-05 48.1 9.7 34 615-649 97-130 (227)
87 d1ye8a1 c.37.1.11 (A:1-178) Hy 90.7 0.014 1E-06 56.2 -1.5 42 615-657 97-138 (178)
88 d1qvra2 c.37.1.20 (A:149-535) 90.4 0.5 3.6E-05 51.0 10.9 27 496-522 33-61 (387)
89 d1g6oa_ c.37.1.11 (A:) Hexamer 90.2 0.17 1.2E-05 53.6 6.6 53 492-553 153-206 (323)
90 d1c4oa2 c.37.1.19 (A:410-583) 90.1 1.3 9.6E-05 41.7 12.4 76 540-628 31-110 (174)
91 d1r6bx2 c.37.1.20 (X:169-436) 89.9 1 7.6E-05 45.7 12.3 18 505-522 40-57 (268)
92 d1sxjd2 c.37.1.20 (D:26-262) R 89.5 0.17 1.2E-05 50.7 5.7 16 506-521 35-50 (237)
93 d1sxjb2 c.37.1.20 (B:7-230) Re 89.4 0.22 1.6E-05 49.5 6.6 43 615-658 99-141 (224)
94 d1g5ta_ c.37.1.11 (A:) ATP:cor 88.7 0.32 2.4E-05 45.2 6.6 51 616-666 93-145 (157)
95 d1c4oa1 c.37.1.19 (A:2-409) Nu 88.7 0.26 1.9E-05 53.8 6.9 66 490-566 9-79 (408)
96 d1tf7a2 c.37.1.11 (A:256-497) 88.5 0.77 5.6E-05 45.7 10.1 37 504-548 26-62 (242)
97 d1t5la2 c.37.1.19 (A:415-595) 88.4 1.1 7.8E-05 42.7 10.5 76 540-628 31-110 (181)
98 d1iqpa2 c.37.1.20 (A:2-232) Re 87.0 0.41 3E-05 47.6 6.8 18 505-522 46-63 (231)
99 d2ba0a3 d.51.1.1 (A:136-219) E 87.0 0.44 3.2E-05 39.3 5.7 48 1031-1093 18-65 (84)
100 d1viga_ d.51.1.1 (A:) Vigilin 87.0 0.4 2.9E-05 38.2 5.3 65 1013-1090 5-70 (71)
101 d1sxja2 c.37.1.20 (A:295-547) 86.5 0.39 2.8E-05 48.4 6.3 18 505-522 53-70 (253)
102 d2cpqa1 d.51.1.1 (A:212-289) F 86.4 0.29 2.1E-05 39.8 4.2 65 1011-1089 6-71 (78)
103 d1hv8a2 c.37.1.19 (A:211-365) 86.0 1.5 0.00011 40.4 9.8 71 540-623 28-102 (155)
104 d1jbka_ c.37.1.20 (A:) ClpB, A 85.7 2 0.00014 41.2 10.6 120 504-627 43-186 (195)
105 d1p9ra_ c.37.1.11 (A:) Extrace 85.6 0.37 2.7E-05 52.5 5.9 38 492-530 144-183 (401)
106 d1fuka_ c.37.1.19 (A:) Initiat 84.4 1.3 9.3E-05 41.3 8.4 73 540-625 27-103 (162)
107 d1e32a2 c.37.1.20 (A:201-458) 84.3 0.39 2.8E-05 48.9 5.0 16 505-520 39-54 (258)
108 d2z0sa2 d.51.1.1 (A:148-234) E 83.9 0.71 5.2E-05 38.1 5.5 49 1031-1093 18-66 (87)
109 d2i3ba1 c.37.1.11 (A:1-189) Ca 83.1 0.53 3.9E-05 44.2 5.2 26 505-531 2-27 (189)
110 d2ctja1 d.51.1.1 (A:8-89) Vigi 82.6 1.5 0.00011 35.6 7.1 69 1012-1093 9-79 (82)
111 d1e9ra_ c.37.1.11 (A:) Bacteri 81.8 0.61 4.4E-05 51.1 5.7 43 503-553 49-91 (433)
112 d1hv8a1 c.37.1.19 (A:3-210) Pu 81.6 4.8 0.00035 38.7 11.9 70 715-789 73-152 (208)
113 d1oywa3 c.37.1.19 (A:207-406) 81.5 2.2 0.00016 41.1 9.1 71 540-623 30-104 (200)
114 d2j0sa1 c.37.1.19 (A:22-243) P 81.3 2.1 0.00015 42.1 9.0 83 702-788 70-165 (222)
115 d1g41a_ c.37.1.20 (A:) HslU {H 79.9 0.33 2.4E-05 53.5 2.5 19 503-521 48-66 (443)
116 d2fnaa2 c.37.1.20 (A:1-283) Ar 79.2 10 0.00074 37.3 14.1 18 503-520 28-45 (283)
117 d1um8a_ c.37.1.20 (A:) ClpX {H 78.7 0.72 5.2E-05 49.3 4.7 17 505-521 69-85 (364)
118 d1t5ia_ c.37.1.19 (A:) Spliceo 78.1 1.9 0.00014 40.3 7.2 74 540-626 27-104 (168)
119 d2ctfa1 d.51.1.1 (A:7-96) Vigi 78.1 2.3 0.00017 35.2 6.8 68 1012-1095 20-89 (90)
120 d2j0sa2 c.37.1.19 (A:244-411) 78.0 6.3 0.00046 36.5 11.0 90 511-623 15-108 (168)
121 d2je6i3 d.51.1.1 (I:153-221) E 78.0 0.072 5.3E-06 42.5 -2.8 49 1031-1093 18-66 (69)
122 d1ofha_ c.37.1.20 (A:) HslU {H 77.6 1.1 7.8E-05 46.8 5.6 20 503-522 48-67 (309)
123 d1w5sa2 c.37.1.20 (A:7-293) CD 77.2 0.69 5E-05 46.9 3.9 22 507-529 49-70 (287)
124 d2eyqa2 c.37.1.19 (A:349-465) 76.3 1.4 0.0001 38.7 5.1 75 700-788 22-96 (117)
125 d1kaga_ c.37.1.2 (A:) Shikimat 75.7 0.71 5.2E-05 42.3 3.2 20 504-523 2-21 (169)
126 d1s2ma2 c.37.1.19 (A:252-422) 75.5 8.7 0.00063 35.5 11.3 75 540-627 32-110 (171)
127 d1zp6a1 c.37.1.25 (A:6-181) Hy 73.8 0.61 4.4E-05 43.6 2.1 20 502-521 2-21 (176)
128 d1w36b1 c.37.1.19 (B:1-485) Ex 72.3 3.6 0.00026 44.8 8.8 61 505-565 17-81 (485)
129 d1tuaa2 d.51.1.1 (A:85-188) Hy 72.2 1.8 0.00013 36.8 4.6 64 1013-1092 3-75 (104)
130 d1fnna2 c.37.1.20 (A:1-276) CD 72.1 2.7 0.0002 41.8 7.1 25 505-530 44-68 (276)
131 d1in4a2 c.37.1.20 (A:17-254) H 71.3 3.3 0.00024 40.6 7.3 18 505-522 36-53 (238)
132 d1ly1a_ c.37.1.1 (A:) Polynucl 71.1 0.81 5.9E-05 41.6 2.3 15 507-521 5-19 (152)
133 d1gkub1 c.37.1.16 (B:1-250) He 71.0 5.3 0.00039 39.1 8.9 75 712-788 84-168 (237)
134 d1cr2a_ c.37.1.11 (A:) Gene 4 70.9 1.4 0.0001 44.6 4.4 39 503-548 34-72 (277)
135 d1qhxa_ c.37.1.3 (A:) Chloramp 70.8 0.79 5.7E-05 42.7 2.2 21 502-522 1-21 (178)
136 d2rb4a1 c.37.1.19 (A:307-474) 70.1 10 0.00075 34.9 10.2 71 540-623 32-106 (168)
137 d1y63a_ c.37.1.1 (A:) Probable 69.7 0.93 6.7E-05 42.2 2.4 18 504-521 5-22 (174)
138 d2bdta1 c.37.1.25 (A:1-176) Hy 68.8 0.97 7.1E-05 41.8 2.3 17 506-522 4-20 (176)
139 d1t6na_ c.37.1.19 (A:) Spliceo 67.9 8.9 0.00065 36.7 9.6 73 715-790 70-153 (207)
140 d1rkba_ c.37.1.1 (A:) Adenylat 67.3 1.2 8.8E-05 41.2 2.7 19 504-522 4-22 (173)
141 d1lw7a2 c.37.1.1 (A:220-411) T 66.7 0.96 7E-05 42.3 1.8 17 505-521 8-24 (192)
142 d1veca_ c.37.1.19 (A:) DEAD bo 66.2 12 0.00086 35.7 10.1 70 715-788 72-152 (206)
143 d1np6a_ c.37.1.10 (A:) Molybdo 65.7 2.5 0.00019 38.7 4.7 24 507-531 5-28 (170)
144 d1ixsb2 c.37.1.20 (B:4-242) Ho 64.8 1.6 0.00012 43.1 3.2 18 505-522 36-53 (239)
145 d1ak2a1 c.37.1.1 (A:14-146,A:1 61.9 2 0.00014 40.7 3.1 21 504-524 3-23 (190)
146 d1wrba1 c.37.1.19 (A:164-401) 61.7 44 0.0032 32.1 13.8 71 715-789 99-179 (238)
147 d1pzna2 c.37.1.11 (A:96-349) D 61.7 2.5 0.00019 41.7 4.1 25 503-527 35-59 (254)
148 d1yksa2 c.37.1.14 (A:325-623) 61.5 4.5 0.00033 41.4 6.0 55 540-598 36-90 (299)
149 d1viaa_ c.37.1.2 (A:) Shikimat 61.2 2.2 0.00016 39.4 3.2 18 505-522 1-18 (161)
150 d1knqa_ c.37.1.17 (A:) Glucona 59.9 1.6 0.00011 40.4 1.8 19 505-523 7-25 (171)
151 d1tf7a1 c.37.1.11 (A:14-255) C 59.7 3 0.00022 40.5 4.2 26 503-528 25-50 (242)
152 d1wp9a1 c.37.1.19 (A:1-200) pu 58.5 19 0.0014 33.5 9.9 71 713-788 51-131 (200)
153 d1gvnb_ c.37.1.21 (B:) Plasmid 58.4 2.1 0.00015 42.9 2.6 16 506-521 34-49 (273)
154 d1s3ga1 c.37.1.1 (A:1-125,A:16 58.0 2.5 0.00018 39.7 3.0 18 506-523 2-19 (182)
155 d1gmxa_ c.46.1.3 (A:) Sulfurtr 57.6 3.7 0.00027 35.0 3.9 47 704-750 48-95 (108)
156 d1zaka1 c.37.1.1 (A:3-127,A:15 57.4 2.5 0.00018 40.0 2.9 18 506-523 5-22 (189)
157 d1zina1 c.37.1.1 (A:1-125,A:16 56.8 2.7 0.00019 39.2 3.0 18 506-523 2-19 (182)
158 d2qm8a1 c.37.1.10 (A:5-327) Me 56.7 22 0.0016 36.4 10.6 104 561-667 136-249 (323)
159 d1szpa2 c.37.1.11 (A:145-395) 56.5 2.9 0.00021 40.8 3.4 21 503-523 33-53 (251)
160 d1e6ca_ c.37.1.2 (A:) Shikimat 56.5 3 0.00022 38.7 3.2 20 505-524 3-22 (170)
161 d1ukza_ c.37.1.1 (A:) Uridylat 56.0 2.8 0.0002 39.9 3.0 17 507-523 11-27 (196)
162 d1m8pa3 c.37.1.15 (A:391-573) 55.8 1.7 0.00012 40.3 1.3 20 503-522 5-24 (183)
163 d1n0wa_ c.37.1.11 (A:) DNA rep 55.6 3 0.00022 39.7 3.3 23 504-526 23-45 (242)
164 d1e4va1 c.37.1.1 (A:1-121,A:15 55.6 2.8 0.0002 39.2 2.9 17 506-522 2-18 (179)
165 d3adka_ c.37.1.1 (A:) Adenylat 55.4 3.1 0.00022 39.5 3.2 22 501-522 5-26 (194)
166 d2ak3a1 c.37.1.1 (A:0-124,A:16 54.8 3 0.00022 39.6 3.0 18 506-523 8-25 (189)
167 d1znwa1 c.37.1.1 (A:20-201) Gu 54.8 2.5 0.00018 39.8 2.4 17 504-520 2-18 (182)
168 d1gkya_ c.37.1.1 (A:) Guanylat 54.8 2.6 0.00019 39.9 2.6 16 505-520 2-17 (186)
169 d1s2ma1 c.37.1.19 (A:46-251) P 54.4 20 0.0014 33.9 9.3 71 714-788 69-149 (206)
170 d1yj5a2 c.37.1.1 (A:351-522) 5 54.2 2.5 0.00018 39.5 2.3 14 507-520 17-30 (172)
171 d1xjca_ c.37.1.10 (A:) Molybdo 54.1 5.5 0.0004 36.5 4.8 23 508-531 5-27 (165)
172 d1jr6a_ c.37.1.14 (A:) HCV hel 54.0 5.7 0.00041 35.6 4.6 52 540-598 35-86 (138)
173 d1x6va3 c.37.1.4 (A:34-228) Ad 53.9 1.6 0.00011 41.3 0.7 18 505-522 20-37 (195)
174 d1tuaa1 d.51.1.1 (A:1-84) Hypo 53.4 5 0.00037 32.6 3.7 56 1025-1093 13-69 (84)
175 d1akya1 c.37.1.1 (A:3-130,A:16 53.3 3.3 0.00024 38.8 3.0 19 506-524 4-22 (180)
176 d1qf9a_ c.37.1.1 (A:) UMP/CMP 53.3 3.1 0.00023 39.3 2.9 17 507-523 9-25 (194)
177 d1bg2a_ c.37.1.9 (A:) Kinesin 52.8 3.9 0.00029 42.4 3.8 25 497-521 67-93 (323)
178 d1teva_ c.37.1.1 (A:) UMP/CMP 52.6 3.4 0.00025 39.1 3.0 17 507-523 4-20 (194)
179 d1nlfa_ c.37.1.11 (A:) Hexamer 52.5 10 0.00075 37.6 7.0 62 501-564 26-90 (274)
180 d1htwa_ c.37.1.18 (A:) Hypothe 52.4 2.1 0.00015 39.5 1.3 37 507-554 36-72 (158)
181 d2cdna1 c.37.1.1 (A:1-181) Ade 52.1 3.5 0.00026 38.5 3.0 18 506-523 2-19 (181)
182 d1khta_ c.37.1.1 (A:) Adenylat 51.7 2.9 0.00021 38.8 2.3 17 505-521 2-18 (190)
183 d1lvga_ c.37.1.1 (A:) Guanylat 51.1 3.3 0.00024 39.4 2.6 17 505-521 1-17 (190)
184 d1tq1a_ c.46.1.3 (A:) Thiosulf 50.4 4.1 0.0003 35.4 2.9 38 713-750 71-109 (119)
185 d2p67a1 c.37.1.10 (A:1-327) LA 50.3 42 0.0031 34.1 11.6 22 508-530 58-79 (327)
186 d1oywa2 c.37.1.19 (A:1-206) Re 49.8 53 0.0038 30.4 11.7 76 713-788 64-145 (206)
187 d1s96a_ c.37.1.1 (A:) Guanylat 49.7 3.4 0.00024 39.9 2.4 19 503-521 1-19 (205)
188 d2iyva1 c.37.1.2 (A:2-166) Shi 49.3 4.4 0.00032 37.2 3.2 19 506-524 3-21 (165)
189 d1qdea_ c.37.1.19 (A:) Initiat 49.3 16 0.0011 35.0 7.5 69 715-788 79-157 (212)
190 d1qkka_ c.23.1.1 (A:) Transcri 49.0 79 0.0058 27.3 12.0 43 617-662 44-86 (140)
191 d1v5wa_ c.37.1.11 (A:) Meiotic 48.9 6.2 0.00045 38.5 4.5 52 503-556 36-87 (258)
192 d1byia_ c.37.1.10 (A:) Dethiob 48.6 6.1 0.00044 37.7 4.3 33 506-546 3-36 (224)
193 d2p6ra4 c.37.1.19 (A:203-403) 48.2 23 0.0017 33.4 8.4 76 540-624 40-145 (201)
194 d1yt8a4 c.46.1.2 (A:243-372) T 47.7 6.3 0.00046 34.7 3.8 37 713-749 79-115 (130)
195 d1g8pa_ c.37.1.20 (A:) ATPase 47.7 2.7 0.0002 43.9 1.4 18 503-520 27-44 (333)
196 d1yrba1 c.37.1.10 (A:1-244) AT 47.3 7.5 0.00055 37.7 4.8 22 507-529 3-24 (244)
197 d1goja_ c.37.1.9 (A:) Kinesin 46.3 5.3 0.00039 42.0 3.6 26 496-521 70-97 (354)
198 d1v8ka_ c.37.1.9 (A:) Kinesin 45.8 5.9 0.00043 41.8 3.8 26 497-522 105-132 (362)
199 d2zfia1 c.37.1.9 (A:4-352) Kin 45.8 5.3 0.00039 41.9 3.4 25 497-521 78-104 (349)
200 d1sdma_ c.37.1.9 (A:) Kinesin 45.6 4.8 0.00035 42.5 3.1 25 497-521 66-92 (364)
201 d2g9na1 c.37.1.19 (A:21-238) I 45.5 8.9 0.00065 37.0 4.9 72 714-788 80-161 (218)
202 d1ys7a2 c.23.1.1 (A:7-127) Tra 45.3 51 0.0037 27.8 9.7 83 540-658 1-83 (121)
203 d1gm5a4 c.37.1.19 (A:550-755) 45.2 0.71 5.2E-05 45.0 -3.6 94 539-645 28-132 (206)
204 d2ncda_ c.37.1.9 (A:) Kinesin 44.3 5.7 0.00042 42.0 3.4 26 496-521 115-142 (368)
205 d1u94a1 c.37.1.11 (A:6-268) Re 43.6 10 0.00075 37.8 5.1 36 504-547 54-89 (263)
206 d1svma_ c.37.1.20 (A:) Papillo 43.5 8.6 0.00063 40.4 4.7 34 487-520 133-170 (362)
207 d1kgda_ c.37.1.1 (A:) Guanylat 43.2 4.8 0.00035 37.7 2.3 17 505-521 4-20 (178)
208 d1ny5a2 c.37.1.20 (A:138-384) 42.9 7.1 0.00052 38.6 3.7 22 499-520 18-39 (247)
209 d1x88a1 c.37.1.9 (A:18-362) Ki 42.7 6 0.00044 41.4 3.3 26 496-521 71-98 (345)
210 d1sgwa_ c.37.1.12 (A:) Putativ 42.4 5.7 0.00042 38.0 2.8 18 503-520 26-43 (200)
211 d1wp9a2 c.37.1.19 (A:201-486) 41.3 39 0.0028 33.4 9.5 72 539-623 160-243 (286)
212 d2pmka1 c.37.1.12 (A:467-707) 40.8 5.8 0.00043 39.2 2.6 17 503-519 28-44 (241)
213 d1nksa_ c.37.1.1 (A:) Adenylat 40.5 6.4 0.00047 36.4 2.8 16 507-522 4-19 (194)
214 d1f9va_ c.37.1.9 (A:) Kinesin 40.2 6.4 0.00046 41.1 2.9 27 496-522 73-101 (342)
215 d1bifa1 c.37.1.7 (A:37-249) 6- 40.1 5.6 0.00041 37.7 2.3 16 507-522 5-20 (213)
216 d1rz3a_ c.37.1.6 (A:) Hypothet 39.8 5.5 0.0004 37.2 2.2 16 505-520 22-38 (198)
217 d2i1qa2 c.37.1.11 (A:65-322) D 39.4 6.6 0.00048 38.1 2.8 26 503-528 33-58 (258)
218 d1jj7a_ c.37.1.12 (A:) Peptide 39.0 6.4 0.00047 39.1 2.6 18 503-520 39-56 (251)
219 d1nija1 c.37.1.10 (A:2-223) Hy 39.0 37 0.0027 32.4 8.5 19 507-526 6-24 (222)
220 d1r6bx3 c.37.1.20 (X:437-751) 38.9 7.1 0.00051 40.2 3.0 17 506-522 54-70 (315)
221 d2hyda1 c.37.1.12 (A:324-578) 37.4 6.7 0.00049 39.0 2.4 18 503-520 43-60 (255)
222 d1z5za1 c.37.1.19 (A:663-906) 37.3 1.2E+02 0.0087 28.7 12.3 97 512-627 65-166 (244)
223 d3b60a1 c.37.1.12 (A:329-581) 37.1 6.9 0.0005 38.9 2.4 18 503-520 40-57 (253)
224 d1mo6a1 c.37.1.11 (A:1-269) Re 36.9 19 0.0014 35.9 5.8 42 503-552 59-100 (269)
225 d1r7ra3 c.37.1.20 (A:471-735) 36.7 29 0.0021 34.3 7.3 16 505-520 42-57 (265)
226 d1uj2a_ c.37.1.6 (A:) Uridine- 36.6 6.9 0.0005 37.4 2.3 13 509-521 7-19 (213)
227 d1knxa2 c.91.1.2 (A:133-309) H 36.2 7.6 0.00055 36.3 2.4 20 503-522 14-33 (177)
228 d1l2ta_ c.37.1.12 (A:) MJ0796 35.9 7.5 0.00054 38.0 2.4 17 503-519 30-46 (230)
229 d1ckea_ c.37.1.1 (A:) CMP kina 35.8 8.7 0.00063 36.6 3.0 19 507-525 5-24 (225)
230 d1r0wa_ c.37.1.12 (A:) Cystic 34.3 9.3 0.00068 38.5 3.0 18 503-520 61-78 (281)
231 d1mv5a_ c.37.1.12 (A:) Multidr 33.8 7.5 0.00055 38.4 2.1 33 617-649 157-189 (242)
232 d1kkma_ c.91.1.2 (A:) HPr kina 33.5 9.3 0.00067 35.6 2.5 20 503-522 13-32 (176)
233 d1wjwa_ d.129.2.1 (A:) Phospho 33.2 25 0.0019 29.8 5.2 36 1060-1095 63-98 (112)
234 d1qxna_ c.46.1.3 (A:) Polysulf 33.0 9.3 0.00068 33.9 2.4 36 714-749 82-118 (137)
235 d1sq5a_ c.37.1.6 (A:) Pantothe 33.0 19 0.0014 36.7 5.1 12 509-520 85-96 (308)
236 d3dhwc1 c.37.1.12 (C:1-240) Me 32.9 8.5 0.00062 37.8 2.3 17 503-519 30-46 (240)
237 d1vi2a1 c.2.1.7 (A:107-288) Pu 32.7 36 0.0026 31.3 6.9 83 502-599 16-100 (182)
238 d1ko7a2 c.91.1.2 (A:130-298) H 32.4 9.7 0.00071 35.2 2.5 20 503-522 14-33 (169)
239 d1em8a_ c.128.1.1 (A:) DNA pol 31.7 44 0.0032 29.6 7.0 78 702-791 23-101 (147)
240 d2a5yb3 c.37.1.20 (B:109-385) 31.4 60 0.0043 31.9 8.9 16 506-521 46-61 (277)
241 d2awna2 c.37.1.12 (A:4-235) Ma 31.0 12 0.00089 36.4 3.1 18 503-520 25-42 (232)
242 d1g2912 c.37.1.12 (1:1-240) Ma 31.0 12 0.00089 36.6 3.1 18 503-520 28-45 (240)
243 d1q3ta_ c.37.1.1 (A:) CMP kina 30.7 12 0.00087 35.7 3.0 18 509-526 8-25 (223)
244 d1xp8a1 c.37.1.11 (A:15-282) R 30.5 21 0.0016 35.4 5.0 38 504-549 57-94 (268)
245 d1v43a3 c.37.1.12 (A:7-245) Hy 30.4 10 0.00075 37.2 2.4 18 503-520 31-48 (239)
246 d1ihua1 c.37.1.10 (A:1-296) Ar 30.0 21 0.0016 35.4 5.0 34 506-547 10-43 (296)
247 d1qvra3 c.37.1.20 (A:536-850) 29.7 10 0.00076 38.8 2.4 17 506-522 55-71 (315)
248 d2vp4a1 c.37.1.1 (A:12-208) De 29.5 11 0.00077 35.3 2.3 14 507-520 12-25 (197)
249 d1ji0a_ c.37.1.12 (A:) Branche 29.4 11 0.0008 37.0 2.4 18 503-520 31-48 (240)
250 d2b2na1 c.37.1.19 (A:26-333) T 28.6 86 0.0063 31.3 9.5 61 714-774 14-87 (308)
251 d3d31a2 c.37.1.12 (A:1-229) Su 28.3 12 0.00091 36.3 2.6 18 503-520 25-42 (229)
252 d1qhla_ c.37.1.12 (A:) Cell di 28.3 4.9 0.00036 37.6 -0.6 13 508-520 28-40 (222)
253 d1xpua3 c.37.1.11 (A:129-417) 27.9 47 0.0034 33.1 7.1 28 496-523 32-62 (289)
254 g1xew.1 c.37.1.12 (X:,Y:) Smc 27.7 11 0.00083 38.3 2.3 15 507-521 29-43 (329)
255 d1ry6a_ c.37.1.9 (A:) Kinesin 27.7 12 0.00087 38.6 2.5 21 502-522 81-103 (330)
256 d1ihua2 c.37.1.10 (A:308-586) 27.5 25 0.0018 34.6 5.0 26 503-528 18-44 (279)
257 d1yt8a3 c.46.1.2 (A:373-529) T 26.9 19 0.0014 32.5 3.5 39 711-749 55-94 (157)
258 d2onka1 c.37.1.12 (A:1-240) Mo 26.8 16 0.0011 35.8 3.0 13 507-519 27-39 (240)
259 d2jdia3 c.37.1.11 (A:95-379) C 26.8 79 0.0058 31.3 8.6 25 502-526 66-90 (285)
260 d1w44a_ c.37.1.11 (A:) NTPase 26.3 12 0.00091 38.3 2.2 41 619-659 184-235 (321)
261 d1o54a_ c.66.1.13 (A:) Hypothe 26.3 93 0.0068 30.3 9.1 29 712-740 195-223 (266)
262 d1z3ix1 c.37.1.19 (X:390-735) 26.2 1.6E+02 0.012 29.6 11.5 97 512-627 97-199 (346)
263 d1krwa_ c.23.1.1 (A:) NTRC rec 26.1 1.7E+02 0.012 24.2 11.2 44 617-663 47-90 (123)
264 d1br2a2 c.37.1.9 (A:80-789) My 25.7 23 0.0017 40.5 4.7 31 491-521 75-108 (710)
265 d1yt8a1 c.46.1.2 (A:107-242) T 25.5 28 0.0021 30.4 4.4 36 714-749 80-117 (136)
266 d1oxxk2 c.37.1.12 (K:1-242) Gl 25.5 12 0.00089 36.7 1.9 18 503-520 30-47 (242)
267 d2fh5b1 c.37.1.8 (B:63-269) Si 25.1 14 0.001 34.9 2.2 16 505-520 1-16 (207)
268 d1luaa1 c.2.1.7 (A:98-288) Met 25.0 33 0.0024 31.8 5.0 80 502-599 21-101 (191)
269 g1f2t.1 c.37.1.12 (A:,B:) Rad5 24.9 18 0.0013 35.7 3.2 43 745-790 235-280 (292)
270 d1kgsa2 c.23.1.1 (A:2-123) Pho 24.6 95 0.0069 25.9 7.8 42 617-661 45-86 (122)
271 d1uf9a_ c.37.1.1 (A:) Dephosph 24.5 14 0.001 34.3 2.1 13 509-521 8-20 (191)
272 d1b0ua_ c.37.1.12 (A:) ATP-bin 24.3 15 0.0011 36.3 2.4 18 503-520 27-44 (258)
273 d1vhta_ c.37.1.1 (A:) Dephosph 24.2 15 0.0011 34.9 2.3 13 509-521 8-20 (208)
274 d1w1wa_ c.37.1.12 (A:) Smc hea 24.1 18 0.0013 38.0 3.2 20 507-526 28-47 (427)
275 d1nn5a_ c.37.1.1 (A:) Thymidyl 24.0 32 0.0023 32.5 4.8 27 504-531 3-29 (209)
276 d2bmfa2 c.37.1.14 (A:178-482) 24.0 26 0.0019 34.8 4.4 55 540-598 178-232 (305)
277 d1yioa2 c.23.1.1 (A:3-130) Res 23.9 1.9E+02 0.014 24.0 10.1 40 616-658 45-84 (128)
278 d1l7vc_ c.37.1.12 (C:) ABC tra 23.6 14 0.001 35.9 2.0 18 503-520 24-41 (231)
279 d1urha2 c.46.1.2 (A:149-268) 3 23.4 26 0.0019 29.6 3.6 36 714-749 82-118 (120)
280 d4tmka_ c.37.1.1 (A:) Thymidyl 23.2 16 0.0012 34.6 2.3 26 504-530 2-27 (210)
281 d1jjva_ c.37.1.1 (A:) Dephosph 23.0 16 0.0012 34.5 2.3 13 509-521 7-19 (205)
282 g1ii8.1 c.37.1.12 (A:,B:) Rad5 23.0 20 0.0014 36.1 3.2 16 506-521 25-40 (369)
283 d1odfa_ c.37.1.6 (A:) Hypothet 22.9 24 0.0017 35.4 3.6 11 510-520 33-43 (286)
284 d1fc4a_ c.67.1.4 (A:) 2-amino- 22.8 28 0.002 36.7 4.4 46 716-761 329-391 (401)
285 d1xhfa1 c.23.1.1 (A:2-122) Aer 22.5 2E+02 0.014 23.7 11.1 99 541-676 3-101 (121)
286 d1ae1a_ c.2.1.2 (A:) Tropinone 22.3 3.1E+02 0.022 25.9 14.6 213 502-749 4-253 (258)
287 d1a1va2 c.37.1.14 (A:326-624) 22.2 38 0.0028 33.9 4.9 38 540-581 36-73 (299)
288 d1m7ga_ c.37.1.4 (A:) Adenosin 21.9 16 0.0012 34.8 1.9 17 505-521 25-41 (208)
289 d2a5ja1 c.37.1.8 (A:9-181) Rab 21.6 24 0.0018 31.9 3.2 13 507-519 6-18 (173)
290 d1r8sa_ c.37.1.8 (A:) ADP-ribo 21.4 19 0.0014 31.7 2.3 14 507-520 3-16 (160)
291 d1vl1a_ c.124.1.1 (A:) 6-phosp 21.4 60 0.0043 30.7 6.2 56 551-627 14-69 (218)
292 d1f6ba_ c.37.1.8 (A:) SAR1 {Ch 21.3 16 0.0012 33.1 1.8 15 506-520 15-29 (186)
293 d1ny5a1 c.23.1.1 (A:1-137) Tra 21.2 2E+02 0.014 24.3 9.4 42 617-661 44-85 (137)
294 d1g6ha_ c.37.1.12 (A:) MJ1267 21.2 19 0.0014 35.4 2.4 18 503-520 29-46 (254)
295 d1byka_ c.93.1.1 (A:) Trehalos 20.5 3.1E+02 0.023 25.3 17.6 35 706-740 163-197 (255)
296 d1lkxa_ c.37.1.9 (A:) Myosin S 20.0 31 0.0023 39.2 4.2 37 492-529 71-110 (684)
No 1
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.2e-40 Score=348.69 Aligned_cols=209 Identities=34% Similarity=0.588 Sum_probs=195.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001264 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
.....+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|+++++... ...++
T Consensus 13 ~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~-----~~~~~ 87 (222)
T d2j0sa1 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQ 87 (222)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCC
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc-----ccCce
Confidence 3455689999999999999999999999999999999999999999999999999999999999987653 35789
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001264 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+||++||++||.|++..+..++...++++.+++||.....+...+..+++|||+|||+|.+++.... ..++++.+||
T Consensus 88 ~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~---~~~~~l~~lV 164 (222)
T d2j0sa1 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKMLV 164 (222)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCEEE
T ss_pred eEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccc---cccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999886643 5788999999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
|||||+|+++||...+..|+..++..+|+++||||+|..+..+++.++++|+.|.++
T Consensus 165 lDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 165 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred ecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999988764
No 2
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=5.8e-38 Score=329.64 Aligned_cols=203 Identities=31% Similarity=0.583 Sum_probs=188.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001264 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
.++|++++|++.|+++|..+||..|||+|+++||.+++|+|+|++|+||||||++|++|++.++... ..++.+||
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~-----~~~~~~li 76 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMV 76 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhccccc-----ccCcceEE
Confidence 3689999999999999999999999999999999999999999999999999999999999987653 45889999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
++||++||.|++..+..+.... ++.+..++|+.....+...+..+++|||+|||+|.+++.... ..++++.+||||
T Consensus 77 l~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~---~~~~~l~~lVlD 153 (206)
T d1veca_ 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLD 153 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEE
T ss_pred EeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchh---ccccccceEEEe
Confidence 9999999999999999887654 577888889999988888889999999999999999987643 578899999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001264 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 676 (1112)
|||.|++++|...+..|+..++.++|+++||||+|..+..+++.++++|+.|
T Consensus 154 EaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999865
No 3
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.1e-38 Score=333.14 Aligned_cols=211 Identities=32% Similarity=0.556 Sum_probs=191.2
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001264 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
+.|.++.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++|+||||||++|++|+++++... ..+
T Consensus 6 ~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~-----~~~ 80 (218)
T d2g9na1 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 80 (218)
T ss_dssp CCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheeccc-----ccC
Confidence 357899999999999999999999999999999999999999999999999999999999999999998542 368
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH-hcCCeEEEeCchHHHHHHHhcCCCccccCCce
Q 001264 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+++||++||++||.|++..+..++..+++.+.+++++.....+.... ..+++|||+||++|.+++.... ..++++.
T Consensus 81 ~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~---~~~~~l~ 157 (218)
T d2g9na1 81 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 157 (218)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTS---SCSTTCC
T ss_pred ccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCC---cccccce
Confidence 99999999999999999999999999999999998887665554333 3468999999999999997643 5788999
Q ss_pred EEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 620 ~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
+|||||||+|++.+|...+..|+..++.++|+++||||+|..+..+++.++.+|+.|.+.
T Consensus 158 ~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 158 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999988764
No 4
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=8.2e-38 Score=329.62 Aligned_cols=211 Identities=31% Similarity=0.518 Sum_probs=187.0
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001264 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
+.+.|.++.+|.+++|++.++++|.++||..|||+|..+||.++.|+|+|++++||||||++|++|++.++... .
T Consensus 2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~-----~ 76 (212)
T d1qdea_ 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----V 76 (212)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred CCCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhcc-----C
Confidence 34678999999999999999999999999999999999999999999999999999999999999999997543 4
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
.+|++||++||++|+.|++..+..+.....+.+.+++++.....+...++ +++|+|+||++|..++.... .+|.++
T Consensus 77 ~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~---~~l~~l 152 (212)
T d1qdea_ 77 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKI 152 (212)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTS---SCCTTC
T ss_pred CCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccCc---eecCcc
Confidence 68999999999999999999999999989999999999988888766654 68999999999999887653 578999
Q ss_pred eEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 619 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 619 ~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
.+|||||||.|++++|...+..|+..+++.+|+++||||+|+.+..+++.++.+|+.|.+
T Consensus 153 ~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 153 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred eEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987753
No 5
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=100.00 E-value=1.8e-37 Score=332.94 Aligned_cols=216 Identities=40% Similarity=0.674 Sum_probs=197.3
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC----CC
Q 001264 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----VA 536 (1112)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~----~~ 536 (1112)
+.|.++.+|.+++|++.+++.|..+||..|||+|..+||.++.|+|++++|+||||||++|++|++.++..... ..
T Consensus 15 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~ 94 (238)
T d1wrba1 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 94 (238)
T ss_dssp SCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhccccccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999875432 22
Q ss_pred CCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccC
Q 001264 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 537 ~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
...+|++|||+||++||.|++..+..++...++++..++|+.....+...+..+++||||||++|.+++.... ..|.
T Consensus 95 ~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~---~~l~ 171 (238)
T d1wrba1 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 171 (238)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS---BCCT
T ss_pred CCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCc---eecc
Confidence 3457999999999999999999999999999999999999999998888899999999999999999987643 5688
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcC----CCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIR----PDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~----~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
++.++||||||+|++.+|...+..|+..++ .++|+|+||||+|..+..+++.++++|+.|.+|
T Consensus 172 ~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 172 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred ccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 999999999999999999999999998764 257999999999999999999999999988875
No 6
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.8e-37 Score=323.61 Aligned_cols=204 Identities=29% Similarity=0.519 Sum_probs=185.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
++|.+|+|++.++++|..+||..|||+|.++||.+++|+|+|++|+||||||++|++|+++.+... ..++++||+
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~-----~~~~~~lil 75 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 75 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeeccc-----CCCceEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886543 357899999
Q ss_pred ccchhHHHHHHHHHHHHhhhcC-ceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 547 APTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~-~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+||++||.|++..+..++..++ +.+++++||.....+...+. .+++|||+||++|.+++... ..+|+++.+||||
T Consensus 76 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~---~~~l~~l~~lVlD 152 (207)
T d1t6na_ 76 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILD 152 (207)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCCEEEEE
T ss_pred eccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCC---ceeccccceeehh
Confidence 9999999999999999988764 67888899999888877764 57899999999999998764 3578999999999
Q ss_pred cchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 625 Eah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
|||+|++ ++|...+..|+..++.++|+++||||+|..+..+++.++++|+.|.+
T Consensus 153 EaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 153 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred hhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999997 48999999999999999999999999999999999999999987764
No 7
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=8.7e-36 Score=313.81 Aligned_cols=203 Identities=33% Similarity=0.643 Sum_probs=187.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001264 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.|+++|.++||..|||+|.++||.++.|+ |+|++++||||||++|++|++.++.. ..+|++|
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~------~~~~~~l 76 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 76 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc------ccCcceE
Confidence 4589999999999999999999999999999999999985 99999999999999999999987544 4689999
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|+|||++||.|++..+..++...++.+.+++|+.....+...+. +++||||||++|.+++.... .+++++.+||||
T Consensus 77 il~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViD 152 (208)
T d1hv8a1 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 152 (208)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCC---CCcccCcEEEEE
Confidence 99999999999999999999999999999999999988877664 69999999999999987643 578999999999
Q ss_pred cchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
|||+|++.+|...+..|+..+++++|+|+||||+|+.+..+++.++++|..|.+
T Consensus 153 Ead~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 153 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred ChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999987764
No 8
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.7e-35 Score=311.33 Aligned_cols=205 Identities=38% Similarity=0.622 Sum_probs=192.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+|+|++.+++.|.++||..|||+|.++||.++.|+|+|++|+||||||++|++|++.++... ..++.++++
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~-----~~~~~~~~~ 75 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQALIM 75 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccc-----cccccceee
Confidence 379999999999999999999999999999999999999999999999999999999999987653 347889999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccc
Q 001264 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+|+.+++.|....+..+....++++.+++|+.....+...+..+++|||+||++|.+++.... .+|.++.+||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~---~~l~~l~~lV~DEa 152 (206)
T d1s2ma1 76 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEA 152 (206)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESH
T ss_pred ccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccce---eecccceEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999997643 57899999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEec
Q 001264 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~~ 679 (1112)
|.|++.+|...+..|+..++..+|+|+||||+|+.+..++..++.+|+.|.++
T Consensus 153 D~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 153 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 99999999999999999999999999999999999999999999999887654
No 9
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=1.9e-33 Score=296.84 Aligned_cols=204 Identities=31% Similarity=0.537 Sum_probs=183.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
++|.+++|++.|++.|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++.+... ...+.++++
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~-----~~~~~~~~~ 75 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVIT 75 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc-----ccccccccc
Confidence 479999999999999999999999999999999999999999999999999999999999887653 346788999
Q ss_pred ccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001264 547 APTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|+..++.+.+..+..+.... ...+.++.++.....+...+..+++|+|+||++|..++.... ..+.++.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~---~~~~~l~~lV 152 (209)
T d1q0ua_ 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHILV 152 (209)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCEEE
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhc---cccccceEEE
Confidence 999999999998888766544 456777788887777766677889999999999999887643 4678899999
Q ss_pred eccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEe
Q 001264 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i~~ 678 (1112)
|||||.|++++|...+..|+..+++++|+++||||+|..+..+++.++++|+.|.+
T Consensus 153 iDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 153 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999988765
No 10
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.98 E-value=4.2e-33 Score=311.85 Aligned_cols=273 Identities=20% Similarity=0.205 Sum_probs=189.1
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
+..|+++|+.||||||||++|+++++..... .++++|||+||++||.|+++.+..+. +.+.....+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-------~~~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~~~~--- 71 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEALRGLP----IRYQTPAIR--- 71 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------HTCCEEEEESSHHHHHHHHHHTTTSC----CBCCC-------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-------cCCEEEEEccHHHHHHHHHHHHhcCC----cceeeeEEe---
Confidence 4578999999999999999999898877654 26789999999999999988766542 221111111
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh--cCCCCcEEEEeccc
Q 001264 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN--IRPDRQTVLFSATF 658 (1112)
Q Consensus 581 ~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~--~~~~~q~il~SAT~ 658 (1112)
........|+++|++.|..++... ..+.++++|||||||.+..+++. +..++.. .++..+++++|||+
T Consensus 72 ----~~~~~~~~i~~~t~~~l~~~~~~~----~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~ 141 (305)
T d2bmfa2 72 ----AEHTGREIVDLMCHATFTMRLLSP----IRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATP 141 (305)
T ss_dssp --------CCCSEEEEEHHHHHHHHTSS----SCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSC
T ss_pred ----ecccCccccccCCcHHHHHHHhcC----ccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCC
Confidence 122345789999999887766432 35678999999999998765432 2222222 24678999999998
Q ss_pred cHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001264 659 PRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG 738 (1112)
Q Consensus 659 ~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~ 738 (1112)
|..... +..... .+...........+.. .+..+. ...+++||||+++..++.++..|...+
T Consensus 142 ~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~ 202 (305)
T d2bmfa2 142 PGSRDP----FPQSNA------------PIMDEEREIPERSWNS-GHEWVT--DFKGKTVWFVPSIKAGNDIAACLRKNG 202 (305)
T ss_dssp TTCCCS----SCCCSS------------CEEEEECCCCCSCCSS-CCHHHH--SSCSCEEEECSCHHHHHHHHHHHHHHT
T ss_pred Ccceee----ecccCC------------cceEEEEeccHHHHHH-HHHHHH--hhCCCEEEEeccHHHHHHHHHHHHhCC
Confidence 753211 000000 0111110011111100 111122 236799999999999999999999999
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEE----------EeCC----------CCCHHHH
Q 001264 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFDA----------PNHYEDY 798 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----------~~~~----------p~s~~~y 798 (1112)
+.+..+||++.+.. ...|.+|...+||||+++++|+|++ +.+|| +|+. |.|...|
T Consensus 203 ~~~~~l~~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 277 (305)
T d2bmfa2 203 KKVIQLSRKTFDSE----YIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSA 277 (305)
T ss_dssp CCCEECCTTCHHHH----GGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CCEEEeCCcChHHH----HhhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHH
Confidence 99999999997544 4468899999999999999999994 55554 3443 5688999
Q ss_pred HHHHccccCCCCccEEEEEecCC
Q 001264 799 VHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~~~~~~~~ 821 (1112)
+||+||+||.|+.+..+++|...
T Consensus 278 ~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 278 AQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp HHHHTTSSCSSSCCCEEEEECSC
T ss_pred hhhhcCcCcCCCCceEEEEECCC
Confidence 99999999999888887777543
No 11
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.95 E-value=2.3e-28 Score=245.30 Aligned_cols=158 Identities=31% Similarity=0.549 Sum_probs=139.9
Q ss_pred ceEEEEecc-cchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001264 688 ITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 688 i~q~~~~~~-~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
|.|++..+. ...|+..|..++.. ....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|+.|..+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~-~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~ 79 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 79 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHh-CCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc
Confidence 457776554 45688888888765 4567999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHH
Q 001264 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKA 846 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (1112)
|||||+++++|||+++|++|||||+|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|.++..
T Consensus 80 iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~~~ 159 (162)
T d1fuka_ 80 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 159 (162)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred eeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888877644
No 12
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.95 E-value=1.2e-27 Score=242.91 Aligned_cols=160 Identities=28% Similarity=0.502 Sum_probs=149.8
Q ss_pred cccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001264 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
...+|.|++.+++...|+..|..+|... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..++..|++|
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 3467889999999999999999999764 567999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChh
Q 001264 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
...|||||+++++|||+|++++|||||+|+++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+......+|..
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~ 161 (171)
T d1s2ma2 82 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 161 (171)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred ccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877778765
Q ss_pred H
Q 001264 844 L 844 (1112)
Q Consensus 844 l 844 (1112)
+
T Consensus 162 ~ 162 (171)
T d1s2ma2 162 I 162 (171)
T ss_dssp C
T ss_pred c
Confidence 4
No 13
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=4.9e-28 Score=244.16 Aligned_cols=160 Identities=33% Similarity=0.554 Sum_probs=146.0
Q ss_pred cccCceEEEEeccc-chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001264 684 VNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
...+|.|++..++. ..|+..|..+|... ...++||||+++..|+.++..|...|+.|..+||++++.+|..+++.|++
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 82 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhc
Confidence 45688898877665 46999999888664 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCCh
Q 001264 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|..+|||||+++++|||+|++++|||||+|+++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+....+.+|.
T Consensus 83 g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~ 162 (168)
T d2j0sa2 83 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162 (168)
T ss_dssp TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888776666775
Q ss_pred hH
Q 001264 843 DL 844 (1112)
Q Consensus 843 ~l 844 (1112)
.+
T Consensus 163 ~~ 164 (168)
T d2j0sa2 163 NV 164 (168)
T ss_dssp CC
T ss_pred Ch
Confidence 43
No 14
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.94 E-value=8.6e-27 Score=232.56 Aligned_cols=149 Identities=37% Similarity=0.552 Sum_probs=139.5
Q ss_pred ccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001264 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 685 ~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
+.+|.|.+..++..+|+..|+.+|.. ..+++||||+++..|+.|+..|...|+.+..+||++++.+|..++..|++|.
T Consensus 1 n~nI~~~~i~v~~~~K~~~L~~ll~~--~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~ 78 (155)
T d1hv8a2 1 NANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK 78 (155)
T ss_dssp SSSSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS
T ss_pred CCCeEEEEEEeChHHHHHHHHHHHcc--CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhccc
Confidence 35788999888889999999999875 3568999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001264 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (1112)
..|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.||+|+++.|...+..|.+.+..
T Consensus 79 ~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 149 (155)
T d1hv8a2 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 149 (155)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred ceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999988888777777654
No 15
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=3.4e-26 Score=230.78 Aligned_cols=156 Identities=30% Similarity=0.520 Sum_probs=136.3
Q ss_pred ccCceEEEEeccc-chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001264 685 NKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 685 ~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
..++.|.+..++. ..|+..|+.+|.. ...+++||||+++..++.|+..|...|+++..+||+|++.+|..+++.|++|
T Consensus 3 l~~ikq~y~~~~~~~~K~~~L~~ll~~-~~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g 81 (168)
T d2rb4a1 3 LNNIRQYYVLCEHRKDKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 81 (168)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccccEEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCC
Confidence 4678888877754 5788888888865 4678999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCCcEEEEeCCCC------CHHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001264 764 VCNLLIATSVAARGLDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~~~p~------s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
...|||||+++++|||++++++|||||+|+ ++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~l~~i~~~~~~~i 161 (168)
T d2rb4a1 82 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 161 (168)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred ceeeeechhhhhhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCCceEEEEEEcHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999998 47899999999999999999999999999888888877776654
Q ss_pred CCCC
Q 001264 838 QVVP 841 (1112)
Q Consensus 838 ~~vp 841 (1112)
.++|
T Consensus 162 ~el~ 165 (168)
T d2rb4a1 162 KQLN 165 (168)
T ss_dssp EEEC
T ss_pred CcCC
Confidence 4444
No 16
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=2e-26 Score=232.57 Aligned_cols=156 Identities=33% Similarity=0.609 Sum_probs=141.5
Q ss_pred ceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001264 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.|++..+..++|+..|+++|... ..+++||||+++..++.|+..|...|+.|..+||+|++.+|..+++.|++|..+|
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 578888888999999999998764 5679999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChhH
Q 001264 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
||||+++++|||+|.+++||+|++|.++..|+||+||+||.|..|.||+|+++. +...+..+.+.+.....++|.++
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 999999999999999999999999999999999999999999999999999875 45666777777777777788765
No 17
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=4.3e-25 Score=228.45 Aligned_cols=142 Identities=20% Similarity=0.347 Sum_probs=127.1
Q ss_pred cCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001264 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 686 ~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++|. +.+.....++..|+.+|... ...++||||+|+..++.|+..|...|+.+..+||++++.+|..+++.|++|..
T Consensus 5 pNi~--y~v~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 81 (200)
T d1oywa3 5 PNIR--YMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDL 81 (200)
T ss_dssp TTEE--EEEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcE--EEEEcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccc
Confidence 4454 33445567888888888763 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCchHHHH
Q 001264 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~ 830 (1112)
+|||||+++++|||+|+|++||||++|.++.+|+||+|||||.|..|.|++|+++.+...+..++
T Consensus 82 ~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 82 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred eEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999987765555443
No 18
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.91 E-value=1.8e-25 Score=239.90 Aligned_cols=188 Identities=21% Similarity=0.191 Sum_probs=136.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.+.++...+.. +...++.+|+++|..+|+.++.|+|++++||||+|||++|+++++..+.. +.++|||+
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~--------~~rvliv~ 93 (237)
T d1gkub1 23 LFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK--------GKRCYVIF 93 (237)
T ss_dssp CCTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT--------SCCEEEEE
T ss_pred cCccchhHHHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh--------cCeEEEEe
Confidence 3333333444444 44567889999999999999999999999999999999999999876543 67899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceE----EEEeCCCChHHHHHHH--hcCCeEEEeCchHHHHHHHhcCCCccccCCceEE
Q 001264 548 PTRELVQQIHSDIRKFAKVMGVRC----VPVYGGSGVAQQISEL--KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~----~~~~gg~~~~~~~~~l--~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
||++|+.|+++.+.+++..+++.+ ....++.....+...+ ...++|+|+||++|.+.+ ..+.++++|
T Consensus 94 Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~-------~~~~~~~~v 166 (237)
T d1gkub1 94 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY-------RELGHFDFI 166 (237)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS-------TTSCCCSEE
T ss_pred ccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh-------hhcCCCCEE
Confidence 999999999999999988776543 3334444444443333 245789999999876533 356789999
Q ss_pred EeccchhhhcCC-----------CchhHHHHHHhcCCCCcEEEEeccccHHHH-HHHHHhcC
Q 001264 622 VMDEADRMFDMG-----------FEPQITRIVQNIRPDRQTVLFSATFPRQVE-ILARKVLN 671 (1112)
Q Consensus 622 ViDEah~~~~~~-----------f~~~i~~il~~~~~~~q~il~SAT~~~~~~-~l~~~~l~ 671 (1112)
||||||.|++.+ |...+..+....+...|+|++|||+++.+. .+.+.+++
T Consensus 167 VvDE~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 167 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp EESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred EEEChhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 999999998643 222233333334567889999999986543 33444444
No 19
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=9.8e-25 Score=228.89 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=141.1
Q ss_pred ccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 468 TWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..+.++|++.+.+.|+. +||..++|+|.++|+.++.|+|+|+++|||||||++|++|++.. ...++|+
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~-----------~~~~~~v 71 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVV 71 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEE
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc-----------cCceEEe
Confidence 35667888888888887 59999999999999999999999999999999999999999853 4578999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH----HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEE
Q 001264 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ----ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~----~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|+++|+.|+...+..+.. ......+....... .........|+++||..+....... ...+..+.+||
T Consensus 72 ~P~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~---~~~~~~v~~lv 144 (206)
T d1oywa2 72 SPLISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWNPVLLA 144 (206)
T ss_dssp CSCHHHHHHHHHHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSCEEEEE
T ss_pred ccchhhhhhHHHHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcc---cchhheeeeee
Confidence 9999999999998877643 33444443333222 2223445789999999875433221 23567799999
Q ss_pred eccchhhhcCCCchhHH----HHHHhcCCCCcEEEEeccccHHHHH-HHHHh-cCCCe
Q 001264 623 MDEADRMFDMGFEPQIT----RIVQNIRPDRQTVLFSATFPRQVEI-LARKV-LNKPV 674 (1112)
Q Consensus 623 iDEah~~~~~~f~~~i~----~il~~~~~~~q~il~SAT~~~~~~~-l~~~~-l~~p~ 674 (1112)
+||||.+.++++..... ..+....+..|+|+||||+|+.+.. ++..+ +.+|+
T Consensus 145 iDEaH~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeeeeeccccchHHHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 99999998877433221 1222334678999999999998754 55543 78885
No 20
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.90 E-value=3.1e-24 Score=224.27 Aligned_cols=184 Identities=22% Similarity=0.291 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001264 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
++..+...|...||..|+|+|.++|+.+++|+++|+++|||||||++++++++..+.. ++++|||+||++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~--------~~~vl~l~P~~~L~ 81 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLYVVPLRALA 81 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEEESSHHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc--------cCcceeecccHHHH
Confidence 5667888999999999999999999999999999999999999999999999987754 45799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCC
Q 001264 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~ 633 (1112)
.|++..+++++... ..+....|+..... .....+.|+++||..+..++.... ..+..+++||+||+|.+.+..
T Consensus 82 ~q~~~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~~ii~DE~h~~~~~~ 154 (202)
T d2p6ra3 82 GEKYESFKKWEKIG-LRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHLLDSEK 154 (202)
T ss_dssp HHHHHHHTTTTTTT-CCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHhhcc-ccceeeccCccccc---ccccccceeeeccHHHHHHHhccc---hhhhhhhhccccHHHHhcccc
Confidence 99999998876543 45555555543321 122357899999999988776543 457789999999999998877
Q ss_pred CchhHHHH---HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001264 634 FEPQITRI---VQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 634 f~~~i~~i---l~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~ 674 (1112)
+...+..+ +..+++..|+|+||||+|+ ...++ .+++.+.
T Consensus 155 r~~~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~~-~~l~~~~ 196 (202)
T d2p6ra3 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY 196 (202)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE
T ss_pred cchHHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHHH-HHcCCCe
Confidence 66555444 4455778999999999976 45565 4554443
No 21
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.89 E-value=5.3e-23 Score=204.76 Aligned_cols=125 Identities=24% Similarity=0.396 Sum_probs=109.8
Q ss_pred cccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001264 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+....+..|+..|.... .+.++||||+++..|+.|+..|...|+.+..+||+|++.+|..+++.|++|++.|||||++
T Consensus 11 ~p~~~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v 90 (174)
T d1c4oa2 11 KPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 90 (174)
T ss_dssp ECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC
T ss_pred EeCCCCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeee
Confidence 344455566777666554 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCC-----CHHHHHHHHccccCCCCccEEEEEecC
Q 001264 774 AARGLDVKELELVINFDAPN-----HYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p~-----s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
+++|||+|+|++||||++|. +...|+|++||+||.| .|.+++|+..
T Consensus 91 ~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~-~g~~~~~~~~ 141 (174)
T d1c4oa2 91 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADR 141 (174)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSS
T ss_pred eeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcC-CCeeEEeecC
Confidence 99999999999999999776 4588999999999987 5777777654
No 22
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.89 E-value=5.1e-23 Score=208.46 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=109.0
Q ss_pred cccchhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001264 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+...++..|+..+.... .+.++||||+++..++.++..|...|+.|..+||+|++.+|..+++.|++|+++|||||++
T Consensus 11 rp~~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv 90 (181)
T d1t5la2 11 RPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 90 (181)
T ss_dssp ECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred EECCCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhH
Confidence 344555666777766554 3569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCC-----CHHHHHHHHccccCCCCccEEEEEecC
Q 001264 774 AARGLDVKELELVINFDAPN-----HYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~~~p~-----s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
+++|||+|+|++|||||+|. +...|+||+||+||.|. |.+++++..
T Consensus 91 ~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~ 141 (181)
T d1t5la2 91 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADT 141 (181)
T ss_dssp CSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSS
T ss_pred HHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecch
Confidence 99999999999999999996 68899999999999884 444444443
No 23
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.85 E-value=6e-21 Score=198.64 Aligned_cols=166 Identities=22% Similarity=0.240 Sum_probs=131.1
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.+|+++|.+++..+. ++++|+++|||||||+++++++...+... +.++|||+|+++|+.|+++.+.+++...
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~~-------~~~il~i~P~~~L~~q~~~~~~~~~~~~ 79 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY-------GGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHhc-------CCcEEEEcCchHHHHHHHHHHHHhhccc
Confidence 479999999999876 56799999999999999998888776542 4579999999999999999999998877
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
+..+..+.++.........+. .+.|+|+||+.+...+.... ..++.+++||+||||.+........+...+.....
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~ 155 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred ccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhh---hhccccceEEEEehhhhhcchhHHHHHHHHHhcCC
Confidence 888888888777766544443 36899999999988876543 46778999999999988754433344444455566
Q ss_pred CCcEEEEeccccHHHHHH
Q 001264 648 DRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l 665 (1112)
..++++||||++.....+
T Consensus 156 ~~~~l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 156 NPLVIGLTASPGSTPEKI 173 (200)
T ss_dssp SCCEEEEESCSCSSHHHH
T ss_pred CCcEEEEEecCCCcHHHH
Confidence 788999999986544443
No 24
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.85 E-value=3.3e-23 Score=213.16 Aligned_cols=167 Identities=19% Similarity=0.321 Sum_probs=122.9
Q ss_pred chhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHH--------HHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001264 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDA--------LFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~--------l~~~L~~~---~~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
.++...++..|..... ++++.|+||.++..+. .+..|... ++.+..+||.|++.+++.+|..|++|++
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~ 91 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRY 91 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCE
Confidence 3456667777766554 5689999998765543 33333332 6788999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCC-HHHHHHHHccccCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001264 766 NLLIATSVAARGLDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~~~p~s-~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
+|||||+|+++|||||++++||++++|.. .+.|.|..||+||.|.+|+||+|+++........ ++.+.
T Consensus 92 ~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~r-l~~~~---------- 160 (206)
T d1gm5a4 92 DILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER-LRFFT---------- 160 (206)
T ss_dssp SBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH-HHHHH----------
T ss_pred EEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhh-hhhcc----------
Confidence 99999999999999999999999999986 4455555899999999999999987543211111 11110
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001264 845 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..++||.+++.|+++|++|+.+|.+|+|+..
T Consensus 161 ----------------------~~~dGf~ia~~Dl~lRG~G~~lG~~QsG~~~ 191 (206)
T d1gm5a4 161 ----------------------LNTDGFKIAEYDLKTRGPGEFFGVKQHGLSG 191 (206)
T ss_dssp ----------------------TCCCSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred ----------------------ccCCCchHHHHHHhccCCccccccccCCCCc
Confidence 1358999999999999999999999999754
No 25
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=6.5e-21 Score=193.45 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=132.9
Q ss_pred HHHHHh-hhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001264 704 LLELLG-EWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 704 ll~~l~-~~~~~~~vLIF~~s~~~~~~l~~~L~~~--~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+...|. +...++++.|+||..+.++.++..|.+. ++.+..+||.|+..+++.+|..|.+|+++|||||.+++.||||
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDv 99 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 99 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCC
Confidence 444443 4445779999999999999999999874 7889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCC-HHHHHHHHccccCCCCccEEEEEecCCccC--chHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001264 781 KELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAK--YSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 781 ~~v~~VI~~~~p~s-~~~y~QriGR~gR~G~~g~~~~~~~~~d~~--~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
|++++||+++.... .+++.|..||+||.+..|+||+++...... .+..-+++|
T Consensus 100 pnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l------------------------ 155 (211)
T d2eyqa5 100 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI------------------------ 155 (211)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHH------------------------
T ss_pred CCCcEEEEecchhccccccccccceeeecCccceEEEEecCCcCCCchHHHHHHHH------------------------
Confidence 99999999999985 555666679999999999999888654211 111111121
Q ss_pred hhhhccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCC
Q 001264 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (1112)
Q Consensus 858 ~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~ 895 (1112)
....-.|.||.+++.|+++|++++.+|.+|+|+
T Consensus 156 -----~~~~dlg~GF~iA~~DL~iRG~G~llG~~QsG~ 188 (211)
T d2eyqa5 156 -----ASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 188 (211)
T ss_dssp -----TTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -----HhcccCCcceeeeHhHHhhcCCccccccccCCc
Confidence 112223789999999999999999999999994
No 26
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.83 E-value=1e-21 Score=189.67 Aligned_cols=101 Identities=29% Similarity=0.499 Sum_probs=92.6
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeC-
Q 001264 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD- 790 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~- 790 (1112)
...+++||||+|+..|+.|+..|...|+.+..|||+|++. .|++|...|||||+++++||| +++++||||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNT 104 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEEe
Confidence 4568999999999999999999999999999999999854 578999999999999999999 9999999855
Q ss_pred ---CCCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001264 791 ---APNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 791 ---~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
+|.++..|+||+||||| |++|. ++|+++.+
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77998865
No 27
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.78 E-value=2.8e-18 Score=179.26 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=133.9
Q ss_pred CHHHHHHHHH-CCCCCChHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 475 TSKIMETIRK-LNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 475 ~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~----g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+......+.. +. ..+|+-|..++..|.. + .+.|++|.||||||.+|+..++..+.. |.+++||+
T Consensus 41 ~~~~~~~~~~~lP-~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~--------g~qv~~l~ 111 (233)
T d2eyqa3 41 DREQYQLFCDSFP-FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAVLV 111 (233)
T ss_dssp CHHHHHHHHHTCC-SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEEEC
T ss_pred CHHHHHhhhhccc-cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCceEEEc
Confidence 3444454444 44 4799999999988862 2 478999999999999999999987654 78999999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCccccCCceEEEe
Q 001264 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||..|+.|++..|+.++..+++.+.+++|+....+.. ..+..| .+|||+|...|.+. ..+.++++|||
T Consensus 112 Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~--------~~f~~LgLiIi 183 (233)
T d2eyqa3 112 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD--------VKFKDLGLLIV 183 (233)
T ss_dssp SSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC--------CCCSSEEEEEE
T ss_pred cHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccC--------Cccccccceee
Confidence 9999999999999999999999999999998876543 344444 69999998765322 46788999999
Q ss_pred ccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001264 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
||-|+ |...-...+.....+.++|++|||+.+....++
T Consensus 184 DEeH~-----fg~kQ~~~l~~~~~~~~~l~~SATPiprtl~~~ 221 (233)
T d2eyqa3 184 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMA 221 (233)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHH
T ss_pred echhh-----hhhHHHHHHHhhCCCCCEEEEecchhHHHHHHH
Confidence 99998 444445556666677899999999877654443
No 28
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.77 E-value=4.2e-19 Score=195.27 Aligned_cols=124 Identities=27% Similarity=0.473 Sum_probs=108.4
Q ss_pred chhHHHHHHHHhhh---hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC--------CCCHHHHHHHHHHhhcCCcc
Q 001264 698 SDRFLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--------AKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg--------~~~~~~R~~~~~~F~~g~~~ 766 (1112)
..|+..|..+|... ..+.++||||++...++.++..|...++++..+|| ++++.+|..+++.|++|.++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 45667776666544 34569999999999999999999999999988877 56667899999999999999
Q ss_pred EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCc
Q 001264 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d 822 (1112)
|||||+++++|||+|+|++||+||+|+++..|+||+||+||.+ .|.+++|+++..
T Consensus 222 vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~ 276 (286)
T d1wp9a2 222 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276 (286)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTS
T ss_pred EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999975 799999998754
No 29
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.77 E-value=1.6e-18 Score=184.59 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=130.6
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001264 478 IMETIRKLNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~----g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+...+..+.| .+|.-|.+|+..|.. + ...|++|.||||||.+|+..++..+.. |.+++||+||..
T Consensus 73 ~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~--------g~q~~~m~Pt~~ 143 (264)
T d1gm5a3 73 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSI 143 (264)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHH
T ss_pred HHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc--------ccceeEEeehHh
Confidence 3344566777 699999999999862 2 478999999999999999999988765 678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||.|++..+..++..+++.+..++|+.+..+. ...+.. .++|||||...|.+- ..+.++++|||||-|
T Consensus 144 La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~--------~~f~~LglviiDEqH 215 (264)
T d1gm5a3 144 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDEQH 215 (264)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEESCC
T ss_pred hhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCC--------CCccccceeeecccc
Confidence 99999999999999999999999999887654 334444 479999999865432 356789999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC
Q 001264 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK 672 (1112)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~ 672 (1112)
++.- .....+.....+.++|+||||+.+... +....++
T Consensus 216 ~fgv-----~Qr~~l~~~~~~~~~l~~SATPiprtl--~~~~~g~ 253 (264)
T d1gm5a3 216 RFGV-----KQREALMNKGKMVDTLVMSATPIPRSM--ALAFYGD 253 (264)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHH--HHHHTCC
T ss_pred ccch-----hhHHHHHHhCcCCCEEEEECCCCHHHH--HHHHcCC
Confidence 8542 222233333456789999999866553 3334443
No 30
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.69 E-value=1.8e-17 Score=171.22 Aligned_cols=110 Identities=20% Similarity=0.354 Sum_probs=97.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc------------------------------CCCeeeecCCCCHHHHHHHHHHhhc
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKH------------------------------GYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------~~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
.++++||||+|+..|+.++..|... ...++++||+|++.+|..+...|++
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~ 118 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 118 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhC
Confidence 3679999999999999988888652 1237889999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCCcEEEE-------eCCCCCHHHHHHHHccccCCCC--ccEEEEEecCCc
Q 001264 763 NVCNLLIATSVAARGLDVKELELVIN-------FDAPNHYEDYVHRVGRTGRAGR--KGCAITFISEED 822 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~-------~~~p~s~~~y~QriGR~gR~G~--~g~~~~~~~~~d 822 (1112)
|.++|||||+++++|||+|..++||. ++.|.+..+|+||+|||||.|. .|.||+|+.+.+
T Consensus 119 g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 119 GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCC
Confidence 99999999999999999999999996 6778899999999999999884 788988877654
No 31
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.67 E-value=1.6e-17 Score=175.59 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=95.2
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHH----------HHHHHHhhcCCccEEEecCcccc---cCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDR----------ESTISDFKSNVCNLLIATSVAAR---GLD 779 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R----------~~~~~~F~~g~~~VLVaT~v~~~---GlD 779 (1112)
..+++||||+++..|+.|+..|...|+++..+||++++..| ..+++.|.+|..++||+|+++.+ |+|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 46899999999999999999999999999999999999876 46788999999999999999998 678
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecC
Q 001264 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 780 i~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
++.+.+||+|++|.|++.|+||+||+|| |+.|..++++..
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~ 154 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSC
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecC
Confidence 8888899999999999999999999999 889988766543
No 32
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.67 E-value=3e-19 Score=191.99 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccchhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec----
Q 001264 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT---- 771 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT---- 771 (1112)
....++..|..+|... +.++||||+++..|+.|+.+|.. .+||++++.+|..+++.|++|.++|||||
T Consensus 9 ~~~~~~~~l~~~l~~~--~~~~iif~~~~~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~ 80 (248)
T d1gkub2 9 VNDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYY 80 (248)
T ss_dssp ESCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEEEEECC--
T ss_pred cCchHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 3566788888888753 46799999999999999999964 38999999999999999999999999999
Q ss_pred CcccccCCCCC-CcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCccCc
Q 001264 772 SVAARGLDVKE-LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 772 ~v~~~GlDi~~-v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~~~ 825 (1112)
+++++|||+|+ |++|||||+|+ |+||+||+||.|+.|.+++++...+...
T Consensus 81 ~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~ 131 (248)
T d1gkub2 81 GTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDE 131 (248)
T ss_dssp ----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHH
T ss_pred chhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHH
Confidence 78999999996 99999999996 8899999999999999998887766543
No 33
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.65 E-value=6.8e-17 Score=176.05 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+++|.+|+..++.++..|+++|||+|||+++++.+...+.. .+.++|||||+++|+.||++.|..++...
T Consensus 112 ~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~-------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc-------ccceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 37999999999999999999999999999999866554433332 13479999999999999999999987555
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCC
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~ 647 (1112)
...+..+++|...... ......|+|+|+..+..... ..++++++||+||||++. ...+..|+..+.+
T Consensus 185 ~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~~------~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~ 251 (282)
T d1rifa_ 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK------EWFSQFGMMMNDECHLAT----GKSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSCG------GGGGGEEEEEEETGGGCC----HHHHHHHTTTCTT
T ss_pred cccceeecceeccccc---ccccceEEEEeeehhhhhcc------cccCCCCEEEEECCCCCC----chhHHHHHHhccC
Confidence 5556667776543211 12346899999987643321 246789999999999864 4567788887766
Q ss_pred CCcEEEEeccccHH
Q 001264 648 DRQTVLFSATFPRQ 661 (1112)
Q Consensus 648 ~~q~il~SAT~~~~ 661 (1112)
....++||||++..
T Consensus 252 ~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 252 CMFKFGLSGSLRDG 265 (282)
T ss_dssp CCEEEEECSSCCTT
T ss_pred CCeEEEEEeecCCC
Confidence 66679999998653
No 34
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.65 E-value=7e-17 Score=167.40 Aligned_cols=118 Identities=19% Similarity=0.380 Sum_probs=103.5
Q ss_pred chhHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001264 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
..|+..|.++|... ...++||||++...++.|+..| .+..+||++++.+|..+++.|++|.++|||||+++++|
T Consensus 78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~G 151 (200)
T d2fwra1 78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 151 (200)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcc
Confidence 46788888888763 4679999999999999998776 45678999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCc---cEEEEEecCC
Q 001264 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK---GCAITFISEE 821 (1112)
Q Consensus 778 lDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~---g~~~~~~~~~ 821 (1112)
||+|.+++||+|++|+|+..|+||+||++|.|+. ..+|.|++..
T Consensus 152 idl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 152 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCC
Confidence 9999999999999999999999999999999863 3555566643
No 35
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.64 E-value=4.3e-16 Score=162.03 Aligned_cols=136 Identities=22% Similarity=0.160 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
+|+++|.+++..++.++..|+++|||+|||++++..+. .+ +.++|||||++.|+.||.+.+..+...
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~----------~~~~Liv~p~~~L~~q~~~~~~~~~~~-- 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL----------STPTLIVVPTLALAEQWKERLGIFGEE-- 136 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS----------CSCEEEEESSHHHHHHHHHHHGGGCGG--
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh----------cCceeEEEcccchHHHHHHHHHhhccc--
Confidence 68999999999999999999999999999998765443 21 346899999999999999998876432
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCC
Q 001264 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~ 648 (1112)
.+....|+. .....|+|+|+..+...... ..+.+++||+||||++.. ..+..++..++ .
T Consensus 137 -~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~------~~~~~~lvIiDEaH~~~a----~~~~~i~~~~~-~ 195 (206)
T d2fz4a1 137 -YVGEFSGRI---------KELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA----ESYVQIAQMSI-A 195 (206)
T ss_dssp -GEEEESSSC---------BCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCT----TTHHHHHHTCC-C
T ss_pred -chhhccccc---------ccccccccceehhhhhhhHh------hCCcCCEEEEECCeeCCc----HHHHHHHhccC-C
Confidence 233333332 23467999999987655432 245789999999999753 34566666553 4
Q ss_pred CcEEEEeccc
Q 001264 649 RQTVLFSATF 658 (1112)
Q Consensus 649 ~q~il~SAT~ 658 (1112)
...|+||||+
T Consensus 196 ~~~lgLTATl 205 (206)
T d2fz4a1 196 PFRLGLTATF 205 (206)
T ss_dssp SEEEEEEESC
T ss_pred CcEEEEecCC
Confidence 4578999997
No 36
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.58 E-value=3.9e-16 Score=151.26 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=90.7
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001264 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
..|+++|++++||||||++++..++..+.. .+.++||++|++.|+.|+++.+.. .++.+....+....
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-------~~~~vli~~p~~~l~~q~~~~~~~----~~~~~~~~~~~~~~- 72 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHG----LDVKFHTQAFSAHG- 72 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT----SCEEEESSCCCCCC-
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhhh-------cCceeeeeecchhHHHHHHHHhhh----hhhhhccccccccc-
Confidence 468899999999999999887777766654 267899999999999998776533 23332222111111
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCch-hHHHHHHhcCCCCcEEEEecccc
Q 001264 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 582 ~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~-~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.....+.++|...+...... ...+.++++|||||||.+....+.. .+...+.. .++.++|+||||+|
T Consensus 73 ------~~~~~~~~~~~~~l~~~~~~----~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 73 ------SGREVIDAMCHATLTYRMLE----PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp ------CSSCCEEEEEHHHHHHHHTS----SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ------ccccchhhhhHHHHHHHHhc----cccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 12356788888877655432 2567889999999999864332211 11122222 35789999999997
No 37
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.51 E-value=3.7e-15 Score=144.06 Aligned_cols=127 Identities=19% Similarity=0.083 Sum_probs=87.5
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
.+..|+.+|||||||+++...++ . .+.++||++||+.|+.||...+..++. ......++|...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~----~-------~~~~vli~~P~~~l~~q~~~~~~~~~~---~~~~~~~~~~~~--- 70 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA----A-------QGYKVLVLNPSVAATLGFGAYMSKAHG---VDPNIRTGVRTI--- 70 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH----T-------TTCCEEEEESCHHHHHHHHHHHHHHHS---CCCEEECSSCEE---
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH----H-------cCCcEEEEcChHHHHHHHHHHHHHHhh---cccccccccccc---
Confidence 45689999999999986544332 1 366899999999999999998887643 333444444322
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc--CCCCcEEEEeccc
Q 001264 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATF 658 (1112)
Q Consensus 584 ~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~--~~~~q~il~SAT~ 658 (1112)
.....++++|++.+.... ...+.++++|||||||.+... ....+..++..+ .+...+|+||||+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~------~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 ----TTGSPITYSTYGKFLADG------GCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ----CCCCSEEEEEHHHHHHTT------GGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ----ccccceEEEeeeeecccc------chhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 123578999988764432 246788999999999975321 122344555544 3566899999995
No 38
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.44 E-value=4.9e-13 Score=148.89 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=107.1
Q ss_pred cchhHHHHHHHHhhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc---cEEEec
Q 001264 697 ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC---NLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT 771 (1112)
.+.|+..|..+|.... .+.++|||++.....+.|...|...|+.+..+||+++..+|..+++.|+++.. -+|++|
T Consensus 99 ~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~ 178 (346)
T d1z3ix1 99 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 178 (346)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecc
Confidence 4578887777776542 35699999999999999999999999999999999999999999999997754 367888
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEE
Q 001264 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~ 817 (1112)
.+++.|||+.++++||+||++|++..+.|++||+.|.|++..|+++
T Consensus 179 ~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~ 224 (346)
T d1z3ix1 179 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 224 (346)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred hhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999999988765543
No 39
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.39 E-value=5.9e-13 Score=141.83 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=94.0
Q ss_pred cchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEe-cC
Q 001264 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIA-TS 772 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVa-T~ 772 (1112)
.+.|+..|.++|..... +.++||||+....++.+...|... ++.+..|||+++..+|..++..|+++. ..|||+ |.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 46799999999887554 458999999999999999988754 899999999999999999999998764 566655 57
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHHccccCCCCccE--EEEEecCC
Q 001264 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISEE 821 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~--~~~~~~~~ 821 (1112)
+++.|||++.+++||+|++||++..+.|++||+.|.|+... +|.|++..
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCC
Confidence 88999999999999999999999999999999999997644 44455543
No 40
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.37 E-value=5.7e-13 Score=144.03 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=83.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCCcEEEEeCC--
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~~~-- 791 (1112)
.|++||||++...++.++..|...|+.|+.+||.+...++. .|++|..+|||||+++++|||| +|.+||++++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 68999999999999999999999999999999999977654 5789999999999999999999 5999997654
Q ss_pred -----------------CCCHHHHHHHHccccCCCCccEEEEEecC
Q 001264 792 -----------------PNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 792 -----------------p~s~~~y~QriGR~gR~G~~g~~~~~~~~ 820 (1112)
|.+.+...||.||+||.+....++.+|..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~ 156 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 156 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCC
Confidence 34778889999999998766556656653
No 41
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.31 E-value=1.3e-11 Score=135.30 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001264 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.++|+|.+++.++. .+..+|+..++|+|||++.+..+...+... .........+|||||. .|+.||..+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~-~~~~~~~~~~LIV~P~-sl~~qW~~E 132 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS-PDCKPEIDKVIVVSPS-SLVRNWYNE 132 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-TTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhc-ccccCCCCcEEEEccc-hhhHHHHHH
Confidence 57899999999874 244688889999999987665444333332 2222233468999997 588999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHH--HHHH-h-----cCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc
Q 001264 560 IRKFAKVMGVRCVPVYGGSGVAQQ--ISEL-K-----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~--~~~l-~-----~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.+++.. .+.++.++|+...... .... . ....|+|+|+..+...... ..--.+.+|||||||++.+
T Consensus 133 i~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~-----l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTSCCCEEEETTGGGCCT
T ss_pred HHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc-----ccccceeeeeccccccccc
Confidence 9998864 3455556665433221 1111 1 1357999999887654321 2223578999999999876
Q ss_pred CCCchhHHHHHHhcCCCCcEEEEecccc
Q 001264 632 MGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.. ......+..+. ....+++|||+-
T Consensus 207 ~~--s~~~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 207 SD--NQTYLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred cc--chhhhhhhccc-cceeeeecchHH
Confidence 43 33444444553 456799999974
No 42
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=99.15 E-value=1.7e-10 Score=112.39 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=104.7
Q ss_pred ecccchhHHHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001264 694 VRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 694 ~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.....|+..++..+...+. +.+|||||.|.+.++.|+..|...+++..+++......+ ..+-...-....|.|||+
T Consensus 13 f~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~E--a~II~~Ag~~g~VtIATN 90 (175)
T d1tf5a4 13 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE--AQIIEEAGQKGAVTIATN 90 (175)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH--HHHHTTTTSTTCEEEEET
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHH--HHHHHhccCCCceeehhh
Confidence 45567899999888876654 459999999999999999999999999999998764333 333333333456999999
Q ss_pred cccccCCCC--------CCcEEEEeCCCCCHHHHHHHHccccCCCCccEEEEEecCCcc
Q 001264 773 VAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~--------~v~~VI~~~~p~s~~~y~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
+|+||.||. +=-+||.-..|.+.....|..||+||-|.+|.+.+|++-+|.
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~ 149 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 149 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHH
Confidence 999999986 344888899999999999999999999999999999987663
No 43
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.06 E-value=2.1e-10 Score=120.57 Aligned_cols=148 Identities=17% Similarity=0.228 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.|+|.+++..+. .+..+|+..++|.|||++.+..+....... ....+||||| ..+..||..++.+++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~------~~~~~LIv~p-~~l~~~W~~e~~~~~ 84 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN------ELTPSLVICP-LSVLKNWEEELSKFA 84 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT------CCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcc------cccccceecc-hhhhhHHHHHHHhhc
Confidence 57899999998764 456688999999999998765554443332 2346899999 567799999999886
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHh
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~ 644 (1112)
... .+....+..... . ....+|+|+|+..+..... ..--.+.+||+||||.+.+.. ......+..
T Consensus 85 ~~~--~~~~~~~~~~~~-~----~~~~~vvi~~~~~~~~~~~------l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~ 149 (230)
T d1z63a1 85 PHL--RFAVFHEDRSKI-K----LEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 149 (230)
T ss_dssp TTS--CEEECSSSTTSC-C----GGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred ccc--cceeeccccchh-h----ccCcCEEEeeHHHHHhHHH------HhcccceEEEEEhhhcccccc--hhhhhhhhh
Confidence 543 333322221111 0 1236899999987744321 112247889999999987643 233344444
Q ss_pred cCCCCcEEEEecccc
Q 001264 645 IRPDRQTVLFSATFP 659 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~ 659 (1112)
+. ....+++|||+-
T Consensus 150 l~-a~~r~~LTgTPi 163 (230)
T d1z63a1 150 LK-SKYRIALTGTPI 163 (230)
T ss_dssp SC-EEEEEEECSSCS
T ss_pred hc-cceEEEEecchH
Confidence 43 345789999974
No 44
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.77 E-value=7.1e-08 Score=99.55 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=124.3
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+--++..|+ |....||-|||++..+|++...+. |..|-||+..--||..=..++..+.
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~--------g~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhc--------CCCceEEecCccccchhhhHHhHHH
Confidence 553 68888888887777774 889999999999999998877554 5567888899999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---CccccCCceEEEeccchhhh-cCCCch---
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF-DMGFEP--- 636 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~~f~~--- 636 (1112)
..+|+.|.++..+....+...... |+|+++|..-|. |+|..+-. .......+.+.||||+|.|+ |....+
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~--~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartplii 223 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYA--ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 223 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHH--SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred HHcCCCccccccccCHHHHHHHhh--CCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEe
Confidence 999999999998887776655554 899999998873 55543221 11224668899999999654 432111
Q ss_pred ----------hHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001264 637 ----------QITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 637 ----------~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l 670 (1112)
.+..++ +.-.++.+||+|.-.....|...+-
T Consensus 224 sg~~~~~a~it~q~~f---~~y~~l~gmtgta~~~~~e~~~iy~ 264 (273)
T d1tf5a3 224 SGQSMTLATITFQNYF---RMYEKLAGMTGTAKTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEHHHHH---TTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred ccCccchhhhhHHHHH---HHHHHHhCCccccHHHHHHHHhccC
Confidence 122333 3335788899998666665554443
No 45
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.59 E-value=1.8e-07 Score=96.91 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=120.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|. .|+++|..+--++.. .-|....||-|||++..+|++...+. |..|-||+..--||..=..++..+.
T Consensus 94 lGm-RhyDVQLiGgi~l~~--g~iaem~TGEGKTL~a~l~a~l~al~--------g~~vhvvTvNdyLA~RDa~~m~~~y 162 (288)
T d1nkta3 94 LDQ-RPFDVQVMGAAALHL--GNVAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 162 (288)
T ss_dssp HSC-CCCHHHHHHHHHHHT--TEEEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccc-eeeeehhHHHHHHhh--hhhhcccCCCchhHHHHHHHHHHHhc--------CCCeEEEecCchhhhhhHHHHHHHH
Confidence 453 577888777666655 46889999999999999999877554 5667888899999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---CccccCCceEEEeccchhhh-cCCCch---
Q 001264 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF-DMGFEP--- 636 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~~f~~--- 636 (1112)
..+|+.|.++..+....+...... |+|+++|..-|. |+|..+-. ...-...+.+.||||+|.|+ |....+
T Consensus 163 ~~lGlsvg~~~~~~~~~~~~~~Y~--~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiLiDeartpLii 240 (288)
T d1nkta3 163 RFLGLQVGVILATMTPDERRVAYN--ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 240 (288)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHHH--SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred HHhCCCcCcccccCChHHHHHHhh--cccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEcccccccccccCceEe
Confidence 999999999999988877655554 899999998873 55543211 11224678899999999654 322111
Q ss_pred --------hHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh
Q 001264 637 --------QITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (1112)
Q Consensus 637 --------~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~ 669 (1112)
.+... ++--.++-+|+.|.......|...+
T Consensus 241 s~~~~a~it~qn~---fr~y~kl~gmtgta~te~~E~~~iy 278 (288)
T d1nkta3 241 SNQTLATITLQNY---FRLYDKLAGMTGTAQTEAAELHEIY 278 (288)
T ss_dssp EEEEEEEECHHHH---HTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred ccCCcchhhHHHH---HHHHHHHhCCcccHHHHHHHHHHHh
Confidence 11222 2333457788888766666565444
No 46
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.51 E-value=7.1e-07 Score=87.85 Aligned_cols=128 Identities=25% Similarity=0.335 Sum_probs=102.4
Q ss_pred EecccchhHHHHHHHHhhhhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEe
Q 001264 693 EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIA 770 (1112)
Q Consensus 693 ~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVa 770 (1112)
++.....|+..++..+...+..| +|||.+.|++..+.|...|...++++.+|+..-. +++.-+-. +.|. ..|-||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h--erEAeIIA-qAG~~GaVTIA 88 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH--EQEATIIA-VAGRRGGVTVA 88 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH--HHHHHHHH-TTTSTTCEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH--HHHHHHHH-hcccCCcEEee
Confidence 34566789999999888877655 9999999999999999999999999999999643 33332222 3454 569999
Q ss_pred cCcccccCCCCC----------------------------------------------------CcEEEEeCCCCCHHHH
Q 001264 771 TSVAARGLDVKE----------------------------------------------------LELVINFDAPNHYEDY 798 (1112)
Q Consensus 771 T~v~~~GlDi~~----------------------------------------------------v~~VI~~~~p~s~~~y 798 (1112)
|++|+||.||.= =-+||-.....|----
T Consensus 89 TNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRID 168 (219)
T d1nkta4 89 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 168 (219)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred ccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccc
Confidence 999999999931 2367777777777777
Q ss_pred HHHHccccCCCCccEEEEEecCCcc
Q 001264 799 VHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~~~~~~~~d~ 823 (1112)
.|-.||+||-|.+|.+.+|++-.|.
T Consensus 169 nQLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 169 NQLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccccCCCccceeEEeccHH
Confidence 8999999999999999999986663
No 47
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.08 E-value=2.5e-06 Score=77.83 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEecCCCccc---hhhcccchhhhhHHhhhCCeEecccee--------eCCCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Q 001264 1017 LEINDFPQNA---RWKVTHKETLGPISEWTGAAITTRGQY--------FPPSRIAGPGERKLYLFIEGPTEQSVKRAKAE 1085 (1112)
Q Consensus 1017 ~~INd~pq~~---R~~~t~~~~~~~i~~~tg~~i~~kG~y--------~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~ 1085 (1112)
|.++.||.-+ |-.=.++.|+.+|++.|||.|++||+- ++.+......+.|||++|+|.+...|+.|+.+
T Consensus 9 iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~~~~~~~~~~epLHv~I~a~~~~~~~~A~~~ 88 (122)
T d1k1ga_ 9 IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQ 88 (122)
T ss_dssp CCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCCcccccccccCCCCCCCCCCCceEEEecCChhhHHHHHHH
Confidence 4456666443 444478999999999999999999963 33333333357899999999999999999999
Q ss_pred HHHHHHHH
Q 001264 1086 LKRVLEDF 1093 (1112)
Q Consensus 1086 i~~~~~e~ 1093 (1112)
|..+|...
T Consensus 89 i~~ll~~~ 96 (122)
T d1k1ga_ 89 IRNILKQG 96 (122)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99999653
No 48
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.82 E-value=2.3e-05 Score=86.26 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
......|.+|+..++.++-+||.|+.|+|||++.. .++..+... ....+..+++++||-..|..+.+.+......+
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~---~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHT---CSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHH---HhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 44578899999999999999999999999998643 333333322 12346789999999999988877766554443
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CCccccCCceEEEeccchhhhcCCCchhHHHHHHh
Q 001264 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~ 644 (1112)
+........ ...-..|..+++....... ....+...+++||||||-.+. .+.+..++..
T Consensus 223 ~~~~~~~~~--------------~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~ 284 (359)
T d1w36d1 223 PLTDEQKKR--------------IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDA 284 (359)
T ss_dssp SCCSCCCCS--------------CSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHT
T ss_pred Cchhhhhhh--------------hhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccC----HHHHHHHHHH
Confidence 321100000 0001112221111110000 011234467899999998642 4566788888
Q ss_pred cCCCCcEEEEecc
Q 001264 645 IRPDRQTVLFSAT 657 (1112)
Q Consensus 645 ~~~~~q~il~SAT 657 (1112)
+++..++|++.-.
T Consensus 285 ~~~~~~lILvGD~ 297 (359)
T d1w36d1 285 LPDHARVIFLGDR 297 (359)
T ss_dssp CCTTCEEEEEECT
T ss_pred hcCCCEEEEECCh
Confidence 8888888877655
No 49
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=96.95 E-value=0.0023 Score=64.00 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=73.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++||||+|||++..-.+... ... +.++++++ ..|.-|. +.++.++..+++.+..+........-.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~-~~~-------g~kV~lit~Dt~R~gA~---eQL~~~a~~l~v~~~~~~~~~~~~~~~ 81 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYY-KGK-------GRRPLLVAADTQRPAAR---EQLRLLGEKVGVPVLEVMDGESPESIR 81 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHH-HHT-------TCCEEEEECCSSCHHHH---HHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHC-------CCcEEEEecccccchHH---HHHHHHHHhcCCccccccccchhhHHH
Confidence 4568999999998655544433 221 34455554 3455444 566777777788777665554433221
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhc-CCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001264 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.... .+ ..+..+++|+||=|-+... ......+..+.....++.-+++++||......
T Consensus 82 ~~~~--------------~~--------~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~ 139 (207)
T d1ls1a2 82 RRVE--------------EK--------ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL 139 (207)
T ss_dssp HHHH--------------HH--------HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH
T ss_pred HHHH--------------HH--------HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH
Confidence 1000 00 1122344555555544321 11234555666667777778889999887766
Q ss_pred HHHHHhc
Q 001264 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~l 670 (1112)
..+..|+
T Consensus 140 ~~~~~f~ 146 (207)
T d1ls1a2 140 SVARAFD 146 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 50
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=96.72 E-value=0.0043 Score=61.87 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=40.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcE-EEEccc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG-LIMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~-LIl~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
++++||||+|||++..=.+. ++..+ |.++ ||-+-| |.-|. +.++.|+..+++.+.....+.....
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~~-------g~kV~lit~Dt~R~gA~---eQL~~~a~~l~v~~~~~~~~~d~~~ 78 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQQ-------GKSVMLAAGDTFRAAAV---EQLQVWGQRNNIPVIAQHTGADSAS 78 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHTT-------TCCEEEECCCTTCHHHH---HHHHHHHHHTTCCEECCSTTCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC-------CCcEEEEecccccccch---hhhhhhhhhcCCcccccccCCCHHH
Confidence 55689999999987555443 33331 3344 444444 44443 6677788888888776666655443
No 51
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=96.69 E-value=0.00084 Score=71.63 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+|-|.+|+.. ....++|.|+.|||||.+.+.-+...+.... .....+||+++|+.+|..+...+..+.
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~----~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC----CChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478999999964 3456899999999999886655544443211 123479999999999998877766643
No 52
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.68 E-value=0.0034 Score=64.94 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=72.5
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-cccC
Q 001264 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA-ARGL 778 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~-~~Gl 778 (1112)
+..++.....+.++++.+|+.--+.+.+..+.. .|+.+..+||+++..+|..++....+|..+|||+|-.+ ...+
T Consensus 122 ~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~ 201 (264)
T d1gm5a3 122 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 201 (264)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCC
Confidence 333444444567999999999888887766655 47899999999999999999999999999999999655 4578
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHHc
Q 001264 779 DVKELELVINFDAPNHYEDYVHRVG 803 (1112)
Q Consensus 779 Di~~v~~VI~~~~p~s~~~y~QriG 803 (1112)
.+.++.+||.=.--.. .|.||-+
T Consensus 202 ~f~~LglviiDEqH~f--gv~Qr~~ 224 (264)
T d1gm5a3 202 HFKNLGLVIIDEQHRF--GVKQREA 224 (264)
T ss_dssp CCSCCCEEEEESCCCC-------CC
T ss_pred Cccccceeeecccccc--chhhHHH
Confidence 8889999886432222 4566543
No 53
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=96.58 E-value=0.0046 Score=61.59 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=40.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+-++++||||+|||++..=.+. ++.. .|.++.+++ - .|.-|. +.++.|+..+++.+..+..+.....
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~-------~g~kV~lit~Dt~R~gA~---eQL~~~a~~l~i~~~~~~~~~d~~~ 75 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN-------LGKKVMFCAGDTFRAAGG---TQLSEWGKRLSIPVIQGPEGTDPAA 75 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT-------TTCCEEEECCCCSSTTHH---HHHHHHHHHHTCCEECCCTTCCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH-------CCCcEEEEEeccccccch---hhHhhcccccCceEEeccCCccHHH
Confidence 4567799999999987554443 3332 133444444 3 456555 4566677777887766655554433
No 54
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=96.53 E-value=0.00049 Score=62.96 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=54.7
Q ss_pred EEecCCCccc---hhhcccchhhhhHHhhhCCeEeccceeeCCCCC--------C--CCCCCceEEEEEeCCH-----HH
Q 001264 1017 LEINDFPQNA---RWKVTHKETLGPISEWTGAAITTRGQYFPPSRI--------A--GPGERKLYLFIEGPTE-----QS 1078 (1112)
Q Consensus 1017 ~~INd~pq~~---R~~~t~~~~~~~i~~~tg~~i~~kG~y~~~~~~--------~--~~~~~~Lyl~ie~~~~-----~~ 1078 (1112)
|.+++||.-+ |-.=.++.|+.+|++.|||-|++||+---...+ + ..-+-+||++|++.+. ..
T Consensus 8 IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~k 87 (134)
T d2bl5a1 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87 (134)
T ss_dssp CCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHH
T ss_pred CCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecCcHHHHHHH
Confidence 3446666544 444578999999999999999999975321110 1 0124699999999874 46
Q ss_pred HHHHHHHHHHHHH
Q 001264 1079 VKRAKAELKRVLE 1091 (1112)
Q Consensus 1079 v~~a~~~i~~~~~ 1091 (1112)
|..|+.+|+.+|.
T Consensus 88 l~~A~~~I~~lL~ 100 (134)
T d2bl5a1 88 LKRAVEEVKKLLV 100 (134)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcC
Confidence 8999999999984
No 55
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=96.51 E-value=0.0054 Score=61.28 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=39.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
++++||||+|||++..-.+.+ +..+ ....+||-+-| |.-|. +.++.|+..+++.+.....+...
T Consensus 14 i~lvGptGvGKTTTiAKLAa~-~~~~------~~kV~lit~Dt~R~gA~---eQL~~~a~~l~i~~~~~~~~~d~ 78 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKM-FVDE------GKSVVLAAADTFRAAAI---EQLKIWGERVGATVISHSEGADP 78 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHT------TCCEEEEEECTTCHHHH---HHHHHHHHHHTCEEECCSTTCCH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC------CCceEEEeecccccchh---HHHHHHhhhcCccccccCCCCcH
Confidence 567899999999875544433 3332 12345555554 43333 56777777888887765554443
No 56
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=96.20 E-value=0.0049 Score=65.88 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+++-|.++|.. .+..++|.|+.|||||++++--+...+.... ...-.+||+++|+.++..+...+.....
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~----~~p~~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCC----CCHHHeEeEeccHHHHHHHHHHHHhhcc
Confidence 477999999974 3456999999999999987665555554321 1123799999999999988887766543
No 57
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=96.16 E-value=0.019 Score=58.03 Aligned_cols=103 Identities=9% Similarity=0.088 Sum_probs=79.0
Q ss_pred chhHHHHHHHHhhhh-cCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001264 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.|....+..+.... .+.+++|.+|+.--+..++..|.. .++.+..+||.++..++..++..+.+|..+|||.|-
T Consensus 87 sGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGth 166 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 166 (233)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeeh
Confidence 355554444444433 456999999999999999888876 477899999999999999999999999999999997
Q ss_pred ccc-ccCCCCCCcEEEEeCCCCCHHHHHHHH
Q 001264 773 VAA-RGLDVKELELVINFDAPNHYEDYVHRV 802 (1112)
Q Consensus 773 v~~-~GlDi~~v~~VI~~~~p~s~~~y~Qri 802 (1112)
.+- ..+.++++.+||.-.--.+ .|-|+.
T Consensus 167 s~l~~~~~f~~LgLiIiDEeH~f--g~kQ~~ 195 (233)
T d2eyqa3 167 KLLQSDVKFKDLGLLIVDEEHRF--GVRHKE 195 (233)
T ss_dssp HHHHSCCCCSSEEEEEEESGGGS--CHHHHH
T ss_pred hhhccCCccccccceeeechhhh--hhHHHH
Confidence 554 5788899998886433222 245554
No 58
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=96.14 E-value=0.014 Score=58.04 Aligned_cols=170 Identities=17% Similarity=0.151 Sum_probs=81.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 585 (1112)
++++||||+|||++..=.+. ++... ....+||-+-| |.-|. +.++.|+..+++.+............+.
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~~------g~kV~lit~Dt~R~ga~---eQL~~~a~~l~v~~~~~~~~~~~~~~~~ 84 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKKK------GFKVGLVGADVYRPAAL---EQLQQLGQQIGVPVYGEPGEKDVVGIAK 84 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHHT------TCCEEEEECCCSSHHHH---HHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC------CCceEEEEeeccccchh---HHHHHhccccCcceeecccchhhhHHHH
Confidence 56689999999987554443 33321 12344555543 44343 5677777788888766555444332221
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcC---CCchhHHHHHHhcCCCCcEEEEeccccHHH
Q 001264 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM---GFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 586 ~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~---~f~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.- +.. .....+++|+||=+=+.... .....+..+...+.+..-+++++||.....
T Consensus 85 ~a-----------------~~~-----~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~ 142 (211)
T d1j8yf2 85 RG-----------------VEK-----FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA 142 (211)
T ss_dssp HH-----------------HHH-----HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred HH-----------------HHH-----hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch
Confidence 10 000 01122344444444321100 012345666666777777788899976543
Q ss_pred HHHHHHhc-CCCeEEEecCccccccCceEEEEecccchhHHHHHHHHhhhhcCCeEEEEeCC
Q 001264 663 EILARKVL-NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (1112)
Q Consensus 663 ~~l~~~~l-~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s 723 (1112)
...+..++ ..++. .-.+...++..+.-.++.++... +-++..++..
T Consensus 143 ~~~~~~~~~~~~~~-------------~lI~TKlDet~~~G~~l~~~~~~--~lPi~~it~G 189 (211)
T d1j8yf2 143 YDLASKFNQASKIG-------------TIIITKMDGTAKGGGALSAVAAT--GATIKFIGTG 189 (211)
T ss_dssp HHHHHHHHHHCTTE-------------EEEEECTTSCSCHHHHHHHHHTT--TCCEEEEECS
T ss_pred HHHHhhhhcccCcc-------------eEEEecccCCCcccHHHHHHHHH--CcCEEEEeCC
Confidence 33333222 21111 01233455666777777776653 2344444444
No 59
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=95.56 E-value=0.015 Score=58.07 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHH----HcCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 490 PMPIQAQALPVI----MSGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 490 pt~iQ~~ai~~i----l~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+|+|..++..+ ..++ -+|+.||.|+|||..+.. +...+.
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~-~a~~l~ 49 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH-HHHhcc
Confidence 346776666544 3443 389999999999986444 344444
No 60
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.08 E-value=0.023 Score=47.02 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=52.9
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+..+|.|-.. .+.+.+ .++.++.+|.+.|||.|.+- + +.++...=++.|.| +..+|+.|+.+|..+|
T Consensus 7 ~~t~~i~IP~~--~~g~iIG~~G~~i~~I~~~tg~~I~i~-----~---~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 75 (79)
T d1x4na1 7 VMTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIA-----P---DSGGLPERSCMLTG-TPESVQSAKRLLDQIV 75 (79)
T ss_dssp CEEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEEC-----S---CCTTCSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChH--hhcceECCCchhHHHHHHHhCCEEEEc-----C---CCCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 45677776432 355555 57899999999999999983 1 23333445788999 6889999999999999
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.|.
T Consensus 76 ~e~ 78 (79)
T d1x4na1 76 EKG 78 (79)
T ss_dssp HHT
T ss_pred Hcc
Confidence 874
No 61
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.99 E-value=0.029 Score=45.77 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=51.3
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
...+|.|-.- .+.+.+- ++.++.+|++.|||.|.+. .+.++..--.+.|.| +...|+.|+.+|.++|.
T Consensus 4 ~t~~i~VP~~--~vg~iIG~~G~~I~~I~~~sga~I~i~--------~~~~~~~~r~i~I~G-~~~~v~~A~~~I~~~i~ 72 (75)
T d1zzka1 4 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKID--------EPLEGSEDRIITITG-TQDQIQNAQYLLQNSVK 72 (75)
T ss_dssp EEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEEC--------CTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChH--hcCeeECCCCchHHHHHhhcCCeEEEc--------cCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 4556666433 4666664 5678999999999999983 122233333588899 68899999999999998
Q ss_pred HH
Q 001264 1092 DF 1093 (1112)
Q Consensus 1092 e~ 1093 (1112)
|.
T Consensus 73 e~ 74 (75)
T d1zzka1 73 QY 74 (75)
T ss_dssp HH
T ss_pred hc
Confidence 85
No 62
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=94.90 E-value=0.015 Score=64.13 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001264 489 KPMPIQAQALPVIM----SG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|+--|=+||..+. .| +..++.|-||||||++.. .++... +..+|||+|+..+|.|+++.+..|
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~----------~rp~LVVt~n~~~A~qL~~dL~~~ 79 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV----------NKPTLVIAHNKTLAGQLYSELKEF 79 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH----------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh----------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35556666666555 34 568889999999997533 333332 234799999999999999999998
Q ss_pred hhh
Q 001264 564 AKV 566 (1112)
Q Consensus 564 ~~~ 566 (1112)
+..
T Consensus 80 l~~ 82 (413)
T d1t5la1 80 FPH 82 (413)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
No 63
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.69 E-value=0.035 Score=46.08 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=54.7
Q ss_pred cCeEEEEEecCCCccchhhcccc-hhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVTHK-ETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~-~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
+.+..+|.|..- .++..|-++ .++.+|.+.|||.|.+ | .++++.=.+.|.|+. ..|..|+.+|..+
T Consensus 8 ~~~t~~i~Ip~~--~~~~iIG~~G~~i~~I~~~tg~~I~~-----p-----~~~~~~~~v~I~G~~-~~v~~A~~~I~~i 74 (81)
T d2ctea1 8 TQASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQI-----P-----RPDDPSNQIKITGTK-EGIEKARHEVLLI 74 (81)
T ss_dssp SCEEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBC-----C-----CTTSSCCEEEEEECH-HHHHHHHHHHHHH
T ss_pred CceEEEEEECHH--HHhhccCCCChhHHHHHHHhCCEEEE-----C-----CCCCCCCEEEEEeCH-HHHHHHHHHHHHH
Confidence 457888988743 677777665 9999999999999997 2 233333457788855 5899999999999
Q ss_pred HHHHH
Q 001264 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
+.|..
T Consensus 75 v~e~~ 79 (81)
T d2ctea1 75 SAEQD 79 (81)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 64
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=94.68 E-value=0.047 Score=50.45 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|.=-|++||+.||||+-++--+.++.. .|.++|++-|..
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~~--------~g~~vl~i~~~~ 45 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPEI 45 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhhh--------cCCcEEEEEecc
Confidence 344678999999999865554444322 256789999964
No 65
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=94.53 E-value=0.27 Score=49.50 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=30.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001264 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR---DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~---dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+|.++-....+.+.|. .++.+++ .+|+.||.|+|||.++. .++..+..
T Consensus 9 ~~~~dlig~~~~~~~L~---------------~~i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l~~ 60 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALA---------------NGLSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGLNC 60 (239)
T ss_dssp SSGGGSCSCHHHHHHHH---------------HHHHTTCCCSEEEEECSTTSSHHHHHH-HHHHHHHC
T ss_pred CCHHHccChHHHHHHHH---------------HHHHcCCCCeeEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 46777766666665443 2233332 37889999999998654 44445443
No 66
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=94.45 E-value=0.036 Score=64.70 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..||+-|..+|. -....++|+|..|||||.+.+.-+...+.... . ..-.+|+|+.|+..|..+...+...+.
T Consensus 10 ~~L~~eQ~~~v~--~~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~-~---~p~~Il~ltft~~Aa~ei~~Ri~~~l~ 81 (623)
T g1qhh.1 10 AHLNKEQQEAVR--TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-V---APWNILAITFTNKAAREMRERVQSLLG 81 (623)
T ss_dssp TTSCHHHHHHHH--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-C---CGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred HhcCHHHHHHHc--CCCCCEEEEEeCchHHHHHHHHHHHHHHHcCC-C---CcccEEEEeccHHHHHHHHHHHHHhcc
Confidence 478999999886 23567899999999999987766655554321 1 123689999999999998888877543
No 67
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.37 E-value=0.04 Score=46.78 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=50.5
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
+..+|.|. +...+..| .++.++.+|.+.|||.|.+ |+ .+...=.+.|.|+ ...|+.|+.+|..++.
T Consensus 10 vt~~i~Vp--~~~~~~iIG~~G~~i~~I~~~tg~~I~~-----p~-----~~~~~~~v~I~G~-~~~V~~A~~~I~~~v~ 76 (91)
T d2ctka1 10 VTIEVEVP--FDLHRYVIGQKGSGIRKMMDEFEVNIHV-----PA-----PELQSDIIAITGL-AANLDRAKAGLLERVK 76 (91)
T ss_dssp EEEEEECC--HHHHHHHHCSSSHHHHHHHHHTCCEEEC-----CC-----TTTTCCEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEC--HHHHhHhcCCCchhHHHHHHHhCCEEEE-----CC-----CCCCcceEEEECC-HHHHHHHHHHHHHHHH
Confidence 44555554 22444444 5678899999999999988 32 2333347889996 6799999999999998
Q ss_pred HHHH
Q 001264 1092 DFTN 1095 (1112)
Q Consensus 1092 e~~~ 1095 (1112)
+.-.
T Consensus 77 e~~~ 80 (91)
T d2ctka1 77 ELQA 80 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 68
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=94.33 E-value=0.08 Score=48.71 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=50.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
-+++||+.||||.-++--+.++.. .+.+++++-|...-- .. + .++. ..|..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~--------~~~kv~~ikp~~D~R---------~~---~-~i~s-~~g~~------- 55 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKIDTR---------SI---R-NIQS-RTGTS------- 55 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECCCGG---------GC---S-SCCC-CCCCS-------
T ss_pred EEEEccccCHHHHHHHHHHHHHHH--------CCCcEEEEEEccccc---------cc---c-eEEc-ccCce-------
Confidence 478899999999865555443322 256789999974321 10 1 1111 11221
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhh
Q 001264 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 587 l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
. ..+.+.+...+...+... .....+.+|.||||+-+
T Consensus 56 --~-~~~~~~~~~~~~~~~~~~----~~~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 56 --L-PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 91 (139)
T ss_dssp --S-CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred --e-eeEEeccchhhHHHHHhh----ccccCcCEEEechhhhc
Confidence 1 235555656666665433 23457899999999974
No 69
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.24 E-value=0.046 Score=45.66 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=52.6
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.|..+|.|..- .+...+- ++.++.+|.+.|||.|.+ |+...+..+++. +.|.|+ .+.|..|+.+|..+|
T Consensus 9 ~~~~~i~Vp~~--~~~~iIG~~G~~i~~I~~~t~~~I~~-----~~~~~~~~~~~~--i~I~G~-~e~v~~A~~~I~~~i 78 (84)
T d2ctla1 9 SFKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQF-----PDKDDGNQPQDQ--ITITGY-EKNTEAARDAILRIV 78 (84)
T ss_dssp TCEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTTCSSCSSE--EEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHH--HHhhhcCCCchhHHHHHHHhCCEEEE-----CCCCCCCCCcce--EEEECC-HHHHHHHHHHHHHHH
Confidence 47777776553 4555554 577899999999999987 333333334444 578887 779999999999999
Q ss_pred HHH
Q 001264 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 79 ~e~ 81 (84)
T d2ctla1 79 GEL 81 (84)
T ss_dssp HHH
T ss_pred HhH
Confidence 875
No 70
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.17 E-value=0.076 Score=43.90 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=52.6
Q ss_pred cCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
+.+..+|.|.-- ..++.+- ++.++.+|.+.|||.|.+ |+...+. . =-+.|.| +...|.+|+.+|..|
T Consensus 8 ~~~t~~i~Vp~~--~~~~iIG~~G~~i~~I~~~tg~~I~~-----p~~~~~~--~--~~v~I~G-~~~~V~~A~~~I~~i 75 (81)
T d2ctma1 8 QMVSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRF-----PQSGAPD--P--NCVTVTG-LPENVEEAIDHILNL 75 (81)
T ss_dssp TCCCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEEC-----CCTTCSC--T--TEEEEES-CHHHHHHHHHHHHHH
T ss_pred cCEEEEEEECHH--HHhhccCCCCccHHHHHHHhCCEEEe-----CCccCCC--C--CEEEEeC-CHHHHHHHHHHHHHH
Confidence 456677877654 5666665 458899999999999965 4322221 1 2478888 567899999999999
Q ss_pred HHHHH
Q 001264 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
++|.+
T Consensus 76 ~~e~~ 80 (81)
T d2ctma1 76 EEEYL 80 (81)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 71
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=94.08 E-value=0.061 Score=53.57 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCceEEEeccchhhhcCC-CchhHHHHHHhcC-CCCcEEEEeccccH
Q 001264 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~-f~~~i~~il~~~~-~~~q~il~SAT~~~ 660 (1112)
..+++||||++|.+.... ....+..++..+. ...++|+.|...|.
T Consensus 96 ~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 96 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 357899999999876422 3344555665554 44555555554443
No 72
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.82 E-value=0.046 Score=55.63 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=30.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|.++.....+...|..+--.. .....+|+.||.|+|||+++ ..++..+
T Consensus 9 ~~~diig~~~~~~~L~~~~~~~------------~~~~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 9 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CHHHccCcHHHHHHHHHHHHcC------------CCCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 5777777777777665431100 01235899999999999754 3444444
No 73
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=93.59 E-value=0.31 Score=49.28 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 001264 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~pt~iQ~~ai~~i--l~g~dvii~a~TGsGKT~~~ 521 (1112)
-.+|.+++....+.+.|... ..+ ..+.+.+..+ ...+.+|+.||.|+|||+.+
T Consensus 5 ~~~~~di~G~~~~k~~l~~~--i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 5 KVTFKDVAGAEEAKEELKEI--VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp SCCGGGCCSCHHHHHHHHHH--HHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCcHHHHccHHHHHHHHHHH--HHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 36899987666666655421 000 0011111111 01246999999999999753
No 74
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.56 E-value=0.075 Score=48.50 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=25.6
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
=-|++||+.||||.-++--+..+ .. .|..++++-|...
T Consensus 4 L~li~GpMfsGKTt~Li~~~~~~-~~-------~g~~v~~ikp~~D 41 (133)
T d1xbta1 4 IQVILGPMFSGKSTELMRRVRRF-QI-------AQYKCLVIKYAKD 41 (133)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-HT-------TTCCEEEEEETTC
T ss_pred EEEEEecccCHHHHHHHHHHHHH-HH-------cCCcEEEEecccc
Confidence 35788999999998644444333 22 2567899988643
No 75
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.39 E-value=0.1 Score=51.17 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=62.8
Q ss_pred HHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001264 494 QAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 494 Q~~ai~~il~---g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
|.+.+..+.. +..+|+.|+.|+|||..+...+ ..+.... ...|-++++.|...
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~----~~h~D~~~i~~~~~------------------- 57 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFP----PKASDVLEIDPEGE------------------- 57 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSC----CCTTTEEEECCSSS-------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhccc----cCCCCEEEEeCCcC-------------------
Confidence 5556665553 4579999999999997654333 4443321 12455777777311
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCc
Q 001264 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q 650 (1112)
...-+++.. +.+.+... .......++||||||+|-.. -...+.+++..-+....
T Consensus 58 -------~I~Id~IR~--------------i~~~~~~~----~~~~~~KviIId~ad~l~~~-aqNaLLK~LEEPp~~t~ 111 (198)
T d2gnoa2 58 -------NIGIDDIRT--------------IKDFLNYS----PELYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAV 111 (198)
T ss_dssp -------CBCHHHHHH--------------HHHHHTSC----CSSSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEE
T ss_pred -------CCCHHHHHH--------------HHHHHhhC----cccCCCEEEEEeCccccchh-hhhHHHHHHhCCCCCce
Confidence 001112221 11222111 22345789999999998532 23345555665555665
Q ss_pred EEEEeccc
Q 001264 651 TVLFSATF 658 (1112)
Q Consensus 651 ~il~SAT~ 658 (1112)
+|++|..+
T Consensus 112 fiLit~~~ 119 (198)
T d2gnoa2 112 IVLNTRRW 119 (198)
T ss_dssp EEEEESCG
T ss_pred eeeccCCh
Confidence 66655543
No 76
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.06 E-value=0.07 Score=42.88 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=41.5
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
+.+.+ -.+.++.+|++.|||.|.+ ++...+.++..-=.+.|.| +...|++|..+|.++|
T Consensus 12 vg~IIGk~G~~Ik~I~~~sga~I~i-----~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~e~i 71 (71)
T d1j4wa2 12 TGLIIGKGGETIKSISQQSGARIEL-----QRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 71 (71)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEE-----ECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred cceEECCCCcChHHHHhhcCcEEEE-----eecCCCCCCCCeEEEEEEe-CHHHHHHHHHHHHhhC
Confidence 44444 3578999999999999997 3233333332222466899 6889999999998864
No 77
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.77 E-value=0.096 Score=42.40 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=42.2
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
+-+.+ .++.++.+|++.|||.|.+. +...+.++..--.+.|.| +..+|+.|...|.++|
T Consensus 14 vg~iIGk~G~~Ik~I~~~sga~I~i~-----~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 73 (74)
T d1dtja_ 14 VGAILGKGGKTLVEYQELTGARIQIS-----KKGEFLPGTRNRRVTITG-SPAATQAAQYLISQRV 73 (74)
T ss_dssp HHHHHCSTTHHHHHHHHHHCCEEEEC-----CTTCCSTTCCEEEEEEEE-SHHHHHHHHHHHHHHC
T ss_pred cceeECCCChhHHHHHHHcCCEEEEc-----cCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHc
Confidence 44444 46789999999999999863 222233333233588999 5889999999998875
No 78
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=92.55 E-value=0.081 Score=43.71 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=52.7
Q ss_pred CCcCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001264 1009 MPEHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1009 ~~~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~ 1087 (1112)
.|..+..+|.|..- .+.-.|= ++.++.+|++.|||.|.+- +....+...++ .+.|.|. ...|.+|..+|.
T Consensus 4 ~~~~~~~~i~Vp~~--~~g~iIGk~G~~Ik~I~~~tga~I~i~----~~~~~~~~~~r--~v~I~G~-~~~v~~A~~~I~ 74 (81)
T d1x4ma1 4 GPGNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMI----QDGPQNTGADK--PLRITGD-PYKVQQAKEMVL 74 (81)
T ss_dssp CCCCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEEC----CSCCCSSCSCE--EEEEEEC-TTTHHHHHHHHH
T ss_pred CCccEEEEEEECHH--HcCeeECCCCchHHHHHHHhCCeEEEc----cCCCCCCCCce--EEEEEeC-HHHHHHHHHHHH
Confidence 35567788887532 4555554 5599999999999999872 11112222344 5778895 579999999999
Q ss_pred HHHHH
Q 001264 1088 RVLED 1092 (1112)
Q Consensus 1088 ~~~~e 1092 (1112)
++|.|
T Consensus 75 ~~i~e 79 (81)
T d1x4ma1 75 ELIRD 79 (81)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99864
No 79
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=92.34 E-value=0.11 Score=50.86 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=67.1
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCCccc
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.|.+|.||||..+-...++..+++++. ++++.+++|..+..+. +..+.. ..+|+|||. .+... .+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEvG----iD 98 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----ID 98 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SC
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCC--ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhhc----cC
Confidence 478999999999888888888888765 5678888988876654 344444 479999996 33332 57
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhc
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~ 645 (1112)
+.+.+++||..|+++. ..++.++-...
T Consensus 99 vpnA~~iiI~~a~rfG----LaQLhQLRGRV 125 (211)
T d2eyqa5 99 IPTANTIIIERADHFG----LAQLHQLRGRV 125 (211)
T ss_dssp CTTEEEEEETTTTSSC----HHHHHHHHTTC
T ss_pred CCCCcEEEEecchhcc----cccccccccee
Confidence 8899999999999853 34555554443
No 80
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.33 E-value=0.11 Score=41.68 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=39.9
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e 1092 (1112)
.++.++.+|.+.|||.|.+ ++. ...++ -+.|.| +...|.+|...|.++|+|
T Consensus 21 k~G~~I~~I~~~tga~I~i-----~~~---~~~er--~v~I~G-~~~~v~~A~~~I~~~l~E 71 (71)
T d2axya1 21 KKGESVKKMREESGARINI-----SEG---NCPER--IITLAG-PTNAIFKAFAMIIDKLEE 71 (71)
T ss_dssp GGGHHHHHHHHHHCCEEEE-----CSS---CCSEE--EEEEEE-CHHHHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHhCCEEEE-----cCC---CCCcc--eEEEEE-CHHHHHHHHHHHHHHhcC
Confidence 4678999999999999986 221 11233 467899 688999999999999875
No 81
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=92.25 E-value=0.13 Score=44.75 Aligned_cols=73 Identities=22% Similarity=0.161 Sum_probs=51.3
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~ 1091 (1112)
...+|.|-.. .+-+.| .++.++.+|++.|||.|.+- .++......++ .|.|.| +...|.+|+.+|.++|.
T Consensus 15 v~~~i~IP~~--~vg~vIGk~G~~Ik~I~~~tga~I~i~----~~~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~~~i~ 85 (104)
T d1we8a_ 15 VFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCD----KESEGTLLLSR--LIKISG-TQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEEC----CSSCCSSSSEE--EEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHH--HhcceECCCCcchHHHHHHcCCEEEEC----CCCCCCCCCcc--EEEEEe-CHHHHHHHHHHHHHHHh
Confidence 4566777443 454544 56899999999999999871 11111112233 578899 88899999999999997
Q ss_pred HHH
Q 001264 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 86 e~~ 88 (104)
T d1we8a_ 86 EDE 88 (104)
T ss_dssp HHH
T ss_pred CcH
Confidence 654
No 82
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=92.24 E-value=0.13 Score=52.59 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred ccccccCCCCHHHHHHHHHC-C-CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001264 466 IKTWHQTGLTSKIMETIRKL-N-YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~-~-~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-.+|.+.+....+.+.|... . +..|..+|.-. +-..+.+|+.||+|+|||+.+
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 35788887777666655321 0 11111111110 112356999999999999753
No 83
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.22 E-value=0.15 Score=41.12 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=41.1
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
.++.++.+|++.|||.|.+... .+..+++ -+.|.|. ..+|+.|..+|.++|.+.
T Consensus 20 k~G~~I~~I~~~tga~I~i~~~------~~~~~~r--~v~I~G~-~~~v~~A~~~I~~~i~~~ 73 (74)
T d1j4wa1 20 RNGEMIKKIQNDAGVRIQFKPD------DGTTPER--IAQITGP-PDRAQHAAEIITDLLRSV 73 (74)
T ss_dssp GGGHHHHHHHHHHCCEEEEECC------TTSCSEE--EEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCEEEeccC------CCCCCee--EEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 5789999999999999987432 1222232 3678885 789999999999999864
No 84
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=91.63 E-value=0.5 Score=47.70 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.+|+.||+|+|||+.+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35899999999999753
No 85
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.33 E-value=0.18 Score=40.15 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=43.9
Q ss_pred EEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1015 AELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1015 ~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
.+|.|-.- .+-+.+ .++.++.+|.+.|||.|.+- +. .+..++ =.+.|.|. ...|+.|..+|...|
T Consensus 4 ~~i~VP~~--~vg~iIGk~G~~I~~I~~~tga~I~i~-----~~-~~~~~~--r~v~I~G~-~~~v~~A~~~I~~~i 69 (70)
T d1wvna1 4 HELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIA-----NP-VEGSSG--RQVTITGS-AASISLAQYLINARL 69 (70)
T ss_dssp EEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEEC-----CC-CTTCSE--EEEEEEEC-HHHHHHHHHHHHHHT
T ss_pred EEEEEChH--hcceeECCCChHHHHHHHHcCcEEEEc-----CC-CCCCCc--EEEEEEeC-HHHHHHHHHHHHHHc
Confidence 34444332 343444 46789999999999999772 21 222233 34779995 889999999998765
No 86
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.10 E-value=0.33 Score=48.14 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=20.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCC
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~ 649 (1112)
.....+|||||+|.|.... ...+..++.......
T Consensus 97 ~~~~kiiiiDe~d~~~~~~-~~~Ll~~le~~~~~~ 130 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAA-QNALRRVIERYTKNT 130 (227)
T ss_dssp SCSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTE
T ss_pred CCCeEEEEEeccccchhhH-HHHHHHHhhhcccce
Confidence 3456799999999875432 334455555544433
No 87
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=90.71 E-value=0.014 Score=56.21 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=24.6
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEecc
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|++||++.....+ ...+..+...+.....+|+++..
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~~h 138 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEECC
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEEEc
Confidence 4567899999998554322 23334444445544556666554
No 88
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=90.42 E-value=0.5 Score=51.00 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHH--cCCCEEEEcCCCChHHHHHH
Q 001264 496 QALPVIM--SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il--~g~dvii~a~TGsGKT~~~l 522 (1112)
+.+..+. ...++|++|+.|.|||...-
T Consensus 33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv~ 61 (387)
T d1qvra2 33 RVIQILLRRTKNNPVLIGEPGVGKTAIVE 61 (387)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCCCCeEECCCCCCHHHHHH
Confidence 3444444 33579999999999997543
No 89
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=90.21 E-value=0.17 Score=53.60 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001264 492 PIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 492 ~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
+-+...+.. +..++++||+|+||||||+. +-.++..+ ....+++.+--+.||.
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i--------~~~~rivtiEd~~El~ 206 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI--------PKEERIISIEDTEEIV 206 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS--------CTTCCEEEEESSCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc--------ccccceeeccchhhhh
Confidence 444444443 45778999999999999974 44444332 1244667777778873
No 90
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=90.10 E-value=1.3 Score=41.71 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~g-~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
|.++||.|+|+.-|..+...+.. .|+.+..++|+.+..+.. ..+..| .+|+|+|.- +..+ .++
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v-----~~~G----iDi 97 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LREG----LDI 97 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CCTT----CCC
T ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeee-----eeee----ccC
Confidence 67899999999888766655544 699999999999876653 444444 699999952 2222 688
Q ss_pred CCceEEEeccchh
Q 001264 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
.++.+||+=.++.
T Consensus 98 p~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 98 PEVSLVAILDADK 110 (174)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCcEEEEecccc
Confidence 8999999866664
No 91
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=89.87 E-value=1 Score=45.67 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|++|+.|.|||...-
T Consensus 40 ~n~lLVG~~GvGKTalv~ 57 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAE 57 (268)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CCcEEECCCCCcHHHHHH
Confidence 579999999999996533
No 92
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.49 E-value=0.17 Score=50.65 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
.+|+.||+|+|||+..
T Consensus 35 ~lll~Gp~G~GKTtl~ 50 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTI 50 (237)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCChHHHH
Confidence 5899999999999753
No 93
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.41 E-value=0.22 Score=49.45 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=25.9
Q ss_pred cCCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.....+||+||+|.|.... ...+...+........+++++...
T Consensus 99 ~~~~kviiiDe~d~~~~~~-~~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp TTCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CcceEEEEEecccccchhH-HHHHhhhccccccceeeeeccCch
Confidence 3456799999999986532 223344455555555555555554
No 94
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=88.74 E-value=0.32 Score=45.24 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=39.9
Q ss_pred CCceEEEeccchhhhcCCCc--hhHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001264 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..+++||+||+-..++.|+. ..+..++...+....+|++.-.+|+.+..++
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~A 145 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 145 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhc
Confidence 45899999999998888865 4577788887777778887777888765543
No 95
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=88.65 E-value=0.26 Score=53.76 Aligned_cols=66 Identities=24% Similarity=0.437 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHH----cCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 490 PMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|+--|-+||..++ .|. .+.+.|-+||+||++.. .++..+ +..+|||||+...|.+++..+..|+
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~----------~rp~LvVt~~~~~A~~l~~dL~~~l 77 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL----------GRPALVLAPNKILAAQLAAEFRELF 77 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH----------TCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh----------CCCEEEEeCCHHHHHHHHHHHHHhc
Confidence 4445555665543 454 46788999999996422 233221 2247899999999999999999986
Q ss_pred hh
Q 001264 565 KV 566 (1112)
Q Consensus 565 ~~ 566 (1112)
..
T Consensus 78 ~~ 79 (408)
T d1c4oa1 78 PE 79 (408)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 96
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=88.47 E-value=0.77 Score=45.65 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|.-+++.|++|+|||+..+-.+.+.+ . .+..+++++-
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~-~-------~~~~~~~is~ 62 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENAC-A-------NKERAILFAY 62 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH-T-------TTCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-H-------hccccceeec
Confidence 45688889999999976555554433 2 2556677763
No 97
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=88.44 E-value=1.1 Score=42.74 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+.-+..++..+ ...|+.+..++|+.+..+.. ..+.. ..+|+|||.- +.. -.++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l----~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv-----~~r----GiDi 97 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYL----KEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LRE----GLDI 97 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHH----HTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCC-----CSS----SCCC
T ss_pred CCeEEEEeehhhhhHHHHHHH----HhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhH-----HHc----cCCC
Confidence 567999999999887655544 45699999999999876654 34444 4799999952 222 2688
Q ss_pred CCceEEEeccchh
Q 001264 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
..+.+||.-.+..
T Consensus 98 p~v~~VI~~d~p~ 110 (181)
T d1t5la2 98 PEVSLVAILDADK 110 (181)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEecCCc
Confidence 8999999888775
No 98
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=87.01 E-value=0.41 Score=47.59 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|+.||+|+|||+++-
T Consensus 46 ~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 368999999999997543
No 99
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=86.99 E-value=0.44 Score=39.28 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=38.5
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
..+.++..|++.|||.|.+ + .+. -+.|.|+ ...|+.|+..|..|+.|.
T Consensus 18 ~gG~~I~~I~~~tg~~I~i-----~-------~~g--~v~I~G~-~e~v~~A~~~I~~i~~ea 65 (84)
T d2ba0a3 18 KKGSMIKLLKSELDVQIVV-----G-------QNG--LIWVNGD-RRKVSIAEEAIYLIEQEA 65 (84)
T ss_dssp GGGHHHHHHHHHHTCEEEE-----C-------TTS--EEEEESC-HHHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHCCEEEE-----C-------CCC--EEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 4688999999999999987 1 122 3678895 579999999999988774
No 100
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.98 E-value=0.4 Score=38.16 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=46.3
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001264 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~ 1090 (1112)
...+|.|.. ...++.+- ++.++.+|++.|||.|.. |+. ..++. -+.|.|+ ...|.+|+.+|.+|.
T Consensus 5 ~~~ei~V~~--~~~~~iIG~~G~~i~~I~~~tg~~I~i-----~~~---~~~~~--~v~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T d1viga_ 5 DYVEINIDH--KFHRHLIGKSGANINRIKDQYKVSVRI-----PPD---SEKSN--LIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECS--SHHHHHTCSSCCHHHHHHHHTCCEEEC-----CCC---CSSSE--EEEEEES-SHHHHHHHHHHHHTC
T ss_pred EEEEEEECH--HHhcccCCCCCchHHHHHHHhCCEEEe-----CCC---CCCCC--EEEEECC-HHHHHHHHHHHHHHh
Confidence 455677664 46777775 567899999999999987 321 11222 3678885 678999999998763
No 101
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=86.48 E-value=0.39 Score=48.39 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||+++-
T Consensus 53 ~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 102
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.42 E-value=0.29 Score=39.83 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred cCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1011 EHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
..|+.+|.|.. ..+.+.+ ..+.++.+|++.|||.|..- ++..=.+.|.|.|..+|++|+.+|..+
T Consensus 6 ~~~t~~i~Ip~--~~ig~vIG~gG~~I~~I~~~tGa~i~i~------------~~~~g~v~I~g~~~eav~~A~~~Ie~~ 71 (78)
T d2cpqa1 6 AAFHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIEL------------DEDTGTFRIYGESADAVKKARGFLEFV 71 (78)
T ss_dssp CSEEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEE------------ETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CCceEEEEECH--HHHHHHcCCChHHHHHHHHhcCcEEEEe------------cCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 35888888843 2344444 56899999999999998751 122235789999999999999999643
No 103
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=85.97 E-value=1.5 Score=40.40 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+.-|.+++..+.. .++.+..++|+.+..+... .+.. ...|+|||.- +..+ .++
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~~G----id~ 94 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSRG----IDV 94 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHHH----CCC
T ss_pred CCCEEEEECchHHHHHHHhhhcc----cccccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hhhh----hhh
Confidence 45789999999988877666554 5888999999987766543 3333 4689999953 2222 577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 95 ~~v~~Vi~ 102 (155)
T d1hv8a2 95 NDLNCVIN 102 (155)
T ss_dssp SCCSEEEE
T ss_pred ccCcEEEE
Confidence 77887773
No 104
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=85.71 E-value=2 Score=41.23 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH-----HHHHHHHHHHhhhc---CceEEEEe
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV-----QQIHSDIRKFAKVM---GVRCVPVY 575 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa-----~Q~~~~~~~~~~~~---~i~~~~~~ 575 (1112)
..++|++|+.|.|||...--.+......+-+ ..-.+..++-+-+.+-+| -+|...++.++... .-.+++++
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp-~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI 121 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSC-GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHHhCCCC-HHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 3589999999999997543333333222211 112244444444443332 25655565554332 11222221
Q ss_pred -------------CCCChHHHH-HHHhcCC--eEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 576 -------------GGSGVAQQI-SELKRGT--EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 576 -------------gg~~~~~~~-~~l~~g~--~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
|+.+....+ ..|.+|. -|.-|||..+..++..+. ...+++..|.|+|-+
T Consensus 122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~---aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDA---ALERRFQKVFVAEPS 186 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCH---HHHTTEEEEECCCCC
T ss_pred chHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCH---HHHhcCCEeecCCCC
Confidence 122222332 2233442 455688888877765532 235678889998865
No 105
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=85.61 E-value=0.37 Score=52.54 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 492 PIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+.|.+.|..++... -+|++||||||||++ +..++..+.
T Consensus 144 ~~~~~~l~~l~~~~~GliLvtGpTGSGKSTT-l~~~l~~~~ 183 (401)
T d1p9ra_ 144 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELN 183 (401)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhceEEEEcCCCCCccHH-HHHHhhhhc
Confidence 44555555555443 366679999999975 445666654
No 106
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=84.36 E-value=1.3 Score=41.34 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..++||.|.|+.-+.+++..+.. .++.+..++|+.+..+... .+.. ...|+|||.- +.. -.++
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv-----~~r----GiDi 93 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR----GIDV 93 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT----TCCC
T ss_pred CCcEEEEEEEEchHHHHHHHHhh----cCceEEEeccCCchhhHHHHHHHHhhcccceeecccc-----ccc----cccC
Confidence 45799999999999887665544 5889999999988776643 3333 4689999963 222 2678
Q ss_pred CCceEEEecc
Q 001264 616 RRVTYLVMDE 625 (1112)
Q Consensus 616 ~~i~~vViDE 625 (1112)
..+++||.=.
T Consensus 94 ~~v~~VI~~d 103 (162)
T d1fuka_ 94 QQVSLVINYD 103 (162)
T ss_dssp CSCSEEEESS
T ss_pred CCceEEEEec
Confidence 8888888633
No 107
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=84.32 E-value=0.39 Score=48.93 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||.|+|||+.
T Consensus 39 ~giLL~GppGtGKT~l 54 (258)
T d1e32a2 39 RGILLYGPPGTGKTLI 54 (258)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred ceeEEecCCCCCchHH
Confidence 5699999999999974
No 108
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=83.92 E-value=0.71 Score=38.13 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=41.2
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
..+.++..|++.|||.|++= ..| .+.|-|+++..+..|+..|+.|..|+
T Consensus 18 ~gG~~ik~i~~~t~~~I~I~----------d~G----~V~I~g~~~~~~~~A~~~I~~I~~ea 66 (87)
T d2z0sa2 18 RKMSMLKTLEEKTECKIFVA----------RNG----RIHLECPNEDLEAIAVMAIKIIDEEA 66 (87)
T ss_dssp GGGHHHHHHHHHHCCEEEEE----------TTT----EEEEECSCHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHCCEEEEC----------CCc----EEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999881 012 68999999999999999999886654
No 109
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.14 E-value=0.53 Score=44.22 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
+.+++.|+.|+|||+ ++..++..+..
T Consensus 2 k~v~ItG~~GtGKTt-l~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTT-LIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHH-HHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHH-HHHHHHHHHHH
Confidence 679999999999998 44455556554
No 110
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.58 E-value=1.5 Score=35.65 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhh-hCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEW-TGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~-tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
....+|.|.. ..+++.+-+ +.++.+|.+. |||.|.. |+ ++...=-+.|.| +...|..|+.+|..+
T Consensus 9 ~~t~~i~Vp~--~~~~~iIGk~G~~I~~I~~~~~~~~I~~-----~~-----~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 75 (82)
T d2ctja1 9 IAEVEVSIPA--KLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRG-PSSDVEKAKKQLLHL 75 (82)
T ss_dssp SCCEEEECCH--HHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEES-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEECH--HHHhhcCCCCCccHHHHHHHcCCcEEEE-----eC-----CCCCCceEEEeC-CHHHHHHHHHHHHHH
Confidence 4456666653 256666654 5688999865 6888763 32 122222467888 588999999999999
Q ss_pred HHHH
Q 001264 1090 LEDF 1093 (1112)
Q Consensus 1090 ~~e~ 1093 (1112)
+.|.
T Consensus 76 v~e~ 79 (82)
T d2ctja1 76 AEEK 79 (82)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 9875
No 111
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=81.81 E-value=0.61 Score=51.08 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=29.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..++++|+|+||||||.++ ..++..+... |..++|+=|.-+++
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~~~-------g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDML 91 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHHhC-------CCCEEEEeCChhHH
Confidence 3468999999999999764 4444444432 45677888887654
No 112
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=81.60 E-value=4.8 Score=38.73 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=54.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cc-cccCCCCCCc
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VA-ARGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~-~~GlDi~~v~ 784 (1112)
..+||.|++..-|..+...+... ++.+..++|+.+.......+. ..+|||+|+ .+ ...+++.++.
T Consensus 73 ~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-----~~~IlV~TP~~l~~~l~~~~~~~~~l~ 147 (208)
T d1hv8a1 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVK 147 (208)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSCC
T ss_pred cceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-----CCCEEEEChHHHHHHHHcCCCCcccCc
Confidence 37999999999999988887664 678899999998877655442 368999994 23 3467889999
Q ss_pred EEEEe
Q 001264 785 LVINF 789 (1112)
Q Consensus 785 ~VI~~ 789 (1112)
+||.-
T Consensus 148 ~lViD 152 (208)
T d1hv8a1 148 YFILD 152 (208)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88863
No 113
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=81.49 E-value=2.2 Score=41.14 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|||+|.. +. .-.++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~-----~~----~GiD~ 96 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----FG----MGINK 96 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----SC----TTTCC
T ss_pred CCCEEEEEeeehhhHHhhhhhcc----CCceeEEecCCCcHHHHHHHHHHHhcccceEEEecch-----hh----hccCC
Confidence 56799999999988876655444 588999999998876543 33333 4689999953 21 22577
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
.++.+||.
T Consensus 97 p~v~~VI~ 104 (200)
T d1oywa3 97 PNVRFVVH 104 (200)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 77887763
No 114
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.28 E-value=2.1 Score=42.11 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHHHHHHhhhh---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC--
Q 001264 702 LRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-- 772 (1112)
Q Consensus 702 ~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-- 772 (1112)
.+++-++.... ....+||+|++++-|..++..+... ++.+..++|+.+.......+. . ...|||+|+
T Consensus 70 ayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~---~-~~~Ilv~TPgr 145 (222)
T d2j0sa1 70 TFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPGR 145 (222)
T ss_dssp HHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHH
T ss_pred hhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhc---c-CCeEEeCCCCc
Confidence 34444444332 2347999999999999999888664 578889999998776655543 3 367999993
Q ss_pred ----cccccCCCCCCcEEEE
Q 001264 773 ----VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 ----v~~~GlDi~~v~~VI~ 788 (1112)
+-...+++.++.++|.
T Consensus 146 l~~~~~~~~~~~~~l~~lVl 165 (222)
T d2j0sa1 146 VFDMIRRRSLRTRAIKMLVL 165 (222)
T ss_dssp HHHHHHTTSSCCTTCCEEEE
T ss_pred HHhcccccccccccceeeee
Confidence 2246778889999885
No 115
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=79.93 E-value=0.33 Score=53.50 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
..+++|++||||+|||+.+
T Consensus 48 ~ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccccEEEECCCCCCHHHHH
Confidence 3568999999999999743
No 116
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=79.18 E-value=10 Score=37.26 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.++.+++.|+.|+|||..
T Consensus 28 ~~~~i~i~G~~G~GKTsL 45 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSI 45 (283)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCcHHHH
Confidence 346688899999999964
No 117
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=78.70 E-value=0.72 Score=49.32 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
.++|++||||+|||..+
T Consensus 69 ~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred cceeeeCCCCccHHHHH
Confidence 57999999999999754
No 118
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.09 E-value=1.9 Score=40.26 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=50.4
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++.-+..++..+. ..++.+..++|+.+..+... .+.. ...|+|||.- +. .-.++
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~----~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~-----~~----~Gid~ 93 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLV----EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG----RGMDI 93 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHH----HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS----TTCCG
T ss_pred CCeEEEEEeeeecchhhhhhhc----cccccccccccccchhhhhhhhhhhccccceeeecccc-----cc----chhhc
Confidence 4579999999988876665554 46888999999988776643 3333 4689999943 11 12466
Q ss_pred CCceEEEeccc
Q 001264 616 RRVTYLVMDEA 626 (1112)
Q Consensus 616 ~~i~~vViDEa 626 (1112)
..+.+||+=..
T Consensus 94 ~~~~~vi~~~~ 104 (168)
T d1t5ia_ 94 ERVNIAFNYDM 104 (168)
T ss_dssp GGCSEEEESSC
T ss_pred ccchhhhhhhc
Confidence 67777665443
No 119
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.06 E-value=2.3 Score=35.22 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=48.3
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhh-hCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001264 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEW-TGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~-tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~ 1089 (1112)
.++.+|.|..- ..|..+- .+.++.+|++. +||.|.. |.+. . -..|.|+ ...|+.|+.+|..|
T Consensus 20 ~~t~~v~VP~~--~h~~iIG~~G~~I~~i~~~~~~v~I~~-----~~~~------~--~v~i~G~-~~~ve~Ak~~I~~i 83 (90)
T d2ctfa1 20 FTVSSVAAPSW--LHRFIIGKKGQNLAKITQQMPKVHIEF-----TEGE------D--KITLEGP-TEDVSVAQEQIEGM 83 (90)
T ss_dssp CEEEEEECCST--THHHHHTTTTCHHHHHHHHCSSSEEEE-----CSSS------C--EEEEEEC-HHHHHHHHHHHHHH
T ss_pred cEEEEEEcCHH--HHhhcCCCCchhHHHHHHHcCCcEEee-----CCCC------c--eEEEeCC-HHHHHHHHHHHHHH
Confidence 45666666443 4666664 56789999877 5888855 3221 1 2788895 66899999999999
Q ss_pred HHHHHH
Q 001264 1090 LEDFTN 1095 (1112)
Q Consensus 1090 ~~e~~~ 1095 (1112)
+.|...
T Consensus 84 v~el~~ 89 (90)
T d2ctfa1 84 VKDLIN 89 (90)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998754
No 120
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.05 E-value=6.3 Score=36.46 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=59.9
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HH
Q 001264 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---EL 587 (1112)
Q Consensus 511 a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l 587 (1112)
-+....|.. ++..++... .+.++||.|.++.-|..++..+.. .++.+..++|+.+..+... .+
T Consensus 15 v~~~~~K~~-~L~~ll~~~---------~~~k~iiF~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f 80 (168)
T d2j0sa2 15 VEREEWKFD-TLCDLYDTL---------TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEF 80 (168)
T ss_dssp ESSTTHHHH-HHHHHHHHH---------TSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHH
T ss_pred ecChHHHHH-HHHHHHHhC---------CCCceEEEeeeHHHHHHHHHHhhh----cccchhhhhhhhhHHHHHHHHHHH
Confidence 344455653 344555442 245799999999998877665544 5788889999988776643 33
Q ss_pred hc-CCeEEEeCchHHHHHHHhcCCCccccCCceEEEe
Q 001264 588 KR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 588 ~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
+. ...|+|||.- +.. -.++..+++||.
T Consensus 81 k~g~~~iLv~Td~-----~~r----GiDi~~v~~VIn 108 (168)
T d2j0sa2 81 RSGASRVLISTDV-----WAR----GLDVPQVSLIIN 108 (168)
T ss_dssp HHTSSCEEEECGG-----GSS----SCCCTTEEEEEE
T ss_pred hcCCccEEeccch-----hcc----cccccCcceEEE
Confidence 33 4699999953 222 267888888774
No 121
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=78.00 E-value=0.072 Score=42.49 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=32.4
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
..+.++..|++.|||.|.+ + .+. -+.|.|+++..|+.|+..|+.|+.|+
T Consensus 18 kgG~~Ik~i~~~tg~~I~i-----~-------~~g--~v~I~g~~~~~v~~A~~~I~~i~~ea 66 (69)
T d2je6i3 18 KNKSMYETLTSKSGCSIFV-----A-------NNG--RIWATCPSRFSEEILIEAIRKIENES 66 (69)
T ss_dssp GGGHHHHHHHTTC---CEE-----C-------TTS--EEEC-----CTTCCTHHHHTTTTTTT
T ss_pred CchhHHHHHHHHHCCEEEE-----c-------CCC--EEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999987 1 111 37889999999999999998877654
No 122
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=77.58 E-value=1.1 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
..+.+|++||||+|||+.+-
T Consensus 48 ~~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999998543
No 123
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=77.22 E-value=0.69 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=14.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l 529 (1112)
++++||+|+|||++ +-.++..+
T Consensus 49 l~l~GppGtGKT~l-~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTL-AKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHH-HHHHHHHH
T ss_pred EEeECCCCCCHHHH-HHHHHHHH
Confidence 34569999999975 33344443
No 124
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=76.31 E-value=1.4 Score=38.67 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001264 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
.+..|..+|.. ..++|||.|.+...++.|...|...++.+..+.+ .+ .|..+. |.|+...+..|+-
T Consensus 22 p~~~L~~~i~~--~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~-~~---------~~~~~~--~~i~~~~l~~GF~ 87 (117)
T d2eyqa2 22 PLDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EASDRG--RYLMIGAAEHGFV 87 (117)
T ss_dssp TTHHHHHHHTT--CCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSS-GG---------GCCTTC--CEEEECCCCSCEE
T ss_pred HHHHHHHHHHh--CCCeEEEEECCccHHHHHHHHHHHcCCCceEecC-hh---------hhcCce--EEEEEecCccccc
Confidence 34555666644 2468999999999999999999999998766644 22 244444 5566678899999
Q ss_pred CCCCcEEEE
Q 001264 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
++...++|.
T Consensus 88 ~~~~~l~vI 96 (117)
T d2eyqa2 88 DTVRNLALI 96 (117)
T ss_dssp ETTTTEEEE
T ss_pred cCCCCEEEE
Confidence 999888886
No 125
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=75.71 E-value=0.71 Score=42.27 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
.+.++++|++|||||+++-+
T Consensus 2 ~k~I~l~G~~GsGKSTvak~ 21 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQ 21 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 36789999999999986543
No 126
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.54 E-value=8.7 Score=35.49 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+.-+..++..+.. .|+.+..++|+.+..+... .+.. ...|+|||.- +. .-.++
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~----~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~-----~~----~Gid~ 98 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITD----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----LT----RGIDI 98 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----SS----SSCCC
T ss_pred CCceEEEEeeeehhhHhHHhhhc----ccccccccccccchhhhhhhhhhcccCccccccchhH-----hh----hcccc
Confidence 45899999999888766655544 5889999999988765543 3333 4689999963 21 22678
Q ss_pred CCceEEEeccch
Q 001264 616 RRVTYLVMDEAD 627 (1112)
Q Consensus 616 ~~i~~vViDEah 627 (1112)
..+.+||.=.+.
T Consensus 99 ~~v~~VI~~d~p 110 (171)
T d1s2ma2 99 QAVNVVINFDFP 110 (171)
T ss_dssp TTEEEEEESSCC
T ss_pred ceeEEEEecCCc
Confidence 888888854433
No 127
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=73.78 E-value=0.61 Score=43.60 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~ 521 (1112)
|.|+-++++|++|||||+++
T Consensus 2 ~~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 2 LGGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45677888999999999853
No 128
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.34 E-value=3.6 Score=44.83 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=43.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC----CCCcEEEEccchhHHHHHHHHHHHHhh
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~----~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+||.|.-|||||.+.+.-++..|......... .--.+|+|+=|+..|..+...+...+.
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L~ 81 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHHHH
Confidence 4589999999999998887787777653221111 113588999999888888777665544
No 129
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=72.24 E-value=1.8 Score=36.83 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=46.3
Q ss_pred eEEEEEecCCCc-------cchhhc--ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 001264 1013 YEAELEINDFPQ-------NARWKV--THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAK 1083 (1112)
Q Consensus 1013 ~~~~~~INd~pq-------~~R~~~--t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~ 1083 (1112)
|..-|.|.||-- +.|-.| ..+.|+..|++.|||.|.+-|. ...|-| +...++.|+
T Consensus 3 ~l~iidi~~~~~~~~~~l~R~~GrIIG~gGktik~Ie~~Tg~~I~I~d~---------------~v~iig-~~e~i~~A~ 66 (104)
T d1tuaa2 3 ILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY---------------EVAIIG-DYERAMAAK 66 (104)
T ss_dssp EEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS---------------EEEEEE-EHHHHHHHH
T ss_pred eEEEEEHHHhhcccHHHHHHHhcceeCCCcHHHHHHHHHHCCeEEEeCC---------------eEEEEE-CchhHHHHH
Confidence 445566666421 223334 7789999999999999999432 355667 667899999
Q ss_pred HHHHHHHHH
Q 001264 1084 AELKRVLED 1092 (1112)
Q Consensus 1084 ~~i~~~~~e 1092 (1112)
..|..||.+
T Consensus 67 ~~Ie~li~~ 75 (104)
T d1tuaa2 67 QAIEMLAEG 75 (104)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999998864
No 130
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=72.10 E-value=2.7 Score=41.77 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.||+|+|||.+. -.++..+.
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHT
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHh
Confidence 57999999999999753 34555554
No 131
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=71.25 E-value=3.3 Score=40.62 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||+++-
T Consensus 36 ~~~L~~GPpGtGKT~lA~ 53 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAH 53 (238)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 479999999999998543
No 132
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=71.11 E-value=0.81 Score=41.64 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
+|++|++|||||+.+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999853
No 133
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=70.96 E-value=5.3 Score=39.10 Aligned_cols=75 Identities=9% Similarity=0.176 Sum_probs=52.2
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhc----CCC----eeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccc-cCCCC
Q 001264 712 YEKGKILIFVHSQEKCDALFRDLLKH----GYP----CLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAAR-GLDVK 781 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~----~~~----~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~-GlDi~ 781 (1112)
..+.++||.+|++.-+..++..|.+. ++. +..++++.+...+...+.... ...|||+|. .+.. -.++.
T Consensus 84 ~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~Ilv~Tp~~l~~~~~~~~ 161 (237)
T d1gkub1 84 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR--NFKIVITTTQFLSKHYRELG 161 (237)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG--GCSEEEEEHHHHHHCSTTSC
T ss_pred HhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc--ccceeccChHHHHHhhhhcC
Confidence 34568999999999999988888653 333 456677777777776665443 357999994 3333 33566
Q ss_pred CCcEEEE
Q 001264 782 ELELVIN 788 (1112)
Q Consensus 782 ~v~~VI~ 788 (1112)
.+++||.
T Consensus 162 ~~~~vVv 168 (237)
T d1gkub1 162 HFDFIFV 168 (237)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 7888774
No 134
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=70.87 E-value=1.4 Score=44.65 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=25.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+|+.|+||+|||+..+-.+++.... .|..+++++.
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~-------~g~~v~~~s~ 72 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA-------MGKKVGLAML 72 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHT-------SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhhhh-------cccceeEeee
Confidence 45667888999999996544444433333 2556777763
No 135
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=70.76 E-value=0.79 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~l 522 (1112)
|+.+-++++|++|||||+++-
T Consensus 1 M~~kiI~l~G~~GsGKsTva~ 21 (178)
T d1qhxa_ 1 MTTRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456678888999999997543
No 136
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.07 E-value=10 Score=34.89 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCCcccc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-g~~IiV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..++||.|.++.-+..++..+. ..++.+..++|+.+..+.. ..+.. ...|+|||.- +. .-.++
T Consensus 32 ~~~~lIF~~~~~~~~~l~~~l~----~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~ilv~Td~-----~~----~Gid~ 98 (168)
T d2rb4a1 32 IGQAIIFCQTRRNAKWLTVEMI----QDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA----RGIDV 98 (168)
T ss_dssp CSEEEEECSCHHHHHHHHHHHH----TTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC----TTTCC
T ss_pred CCcEEEEcCHHHHHHHHHHHHH----hcCCcceecccchhhHHHHHHhhhhcCCceeeeechhh-----hh----hhhcc
Confidence 4579999999998887665444 4689999999999877654 33343 4689999953 11 22578
Q ss_pred CCceEEEe
Q 001264 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 99 ~~v~~Vi~ 106 (168)
T d2rb4a1 99 KQVTIVVN 106 (168)
T ss_dssp TTEEEEEE
T ss_pred ccccEEEe
Confidence 88888875
No 137
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=69.71 E-value=0.93 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..++++|++|||||++.
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 456899999999999854
No 138
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=68.77 E-value=0.97 Score=41.79 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
-++++|++|||||+++-
T Consensus 4 lI~i~G~~GsGKTTva~ 20 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCK 20 (176)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998643
No 139
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.89 E-value=8.9 Score=36.66 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=53.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-----CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKHG-----YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~~-----~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v 783 (1112)
..+||.|++++-+..+...+...+ +.+..++|+.+....... +......|||+|+- +. ..+++.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l 146 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 146 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHH---HHhcCCCEEEeCcchhhhhccCCceecccc
Confidence 479999999999999988887642 457788888886654433 33456889999942 22 46788889
Q ss_pred cEEEEeC
Q 001264 784 ELVINFD 790 (1112)
Q Consensus 784 ~~VI~~~ 790 (1112)
.++|.-.
T Consensus 147 ~~lVlDE 153 (207)
T d1t6na_ 147 KHFILDE 153 (207)
T ss_dssp CEEEEES
T ss_pred ceeehhh
Confidence 8888533
No 140
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=67.29 E-value=1.2 Score=41.17 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
-..++++|+.|||||+++-
T Consensus 4 ~~~I~i~G~pGsGKTTia~ 22 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGK 22 (173)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568999999999998544
No 141
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=66.71 E-value=0.96 Score=42.35 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.++++|++|||||+.+
T Consensus 8 K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLV 24 (192)
T ss_dssp EEEEEECCTTSHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999853
No 142
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.21 E-value=12 Score=35.70 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=52.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC------cccccCCCCCC
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS------VAARGLDVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~------v~~~GlDi~~v 783 (1112)
..+||+|++.+-+..+...+... +..+..++|+.........+ .....|||+|+ +-...+++.++
T Consensus 72 ~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~ivv~TPgrl~~~~~~~~~~~~~l 147 (206)
T d1veca_ 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred cceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH----HhccCeEEeCCccccccccchhcccccc
Confidence 47999999999999998887653 46677888888876665443 45678999993 12245677888
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 148 ~~lVl 152 (206)
T d1veca_ 148 QMIVL 152 (206)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 88775
No 143
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=65.71 E-value=2.5 Score=38.65 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhc
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++++|+.|||||+ ++-.++..+..
T Consensus 5 i~itG~~GSGKTT-L~~~L~~~l~~ 28 (170)
T d1np6a_ 5 LAFAAWSGTGKTT-LLKKLIPALCA 28 (170)
T ss_dssp EEEECCTTSCHHH-HHHHHHHHHHH
T ss_pred EEEEcCCCCCHHH-HHHHHHHHHHH
Confidence 5678999999996 35555555444
No 144
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=64.81 E-value=1.6 Score=43.12 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|+.||+|+|||+.+-
T Consensus 36 ~~~Ll~GPpG~GKTtla~ 53 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAH 53 (239)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 145
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=61.91 E-value=2 Score=40.74 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
|-.+|++|++|||||++.-+.
T Consensus 3 ~~riil~G~pGSGKsT~a~~L 23 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKL 23 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 456888999999999976543
No 146
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=61.71 E-value=44 Score=32.12 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc------ccccCCCCCCc
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV------AARGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v------~~~GlDi~~v~ 784 (1112)
.++||.|++.+-|..+...+... ++.+..++|+......... ......|||+|+- -...+++.++.
T Consensus 99 ~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~ 174 (238)
T d1wrba1 99 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE----VQMGCHLLVATPGRLVDFIEKNKISLEFCK 174 (238)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH----HSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhh----cccCCceeecCHHHHHhHHccCceeccccc
Confidence 37999999999999998777553 6788888888776554332 2346789999931 12467788899
Q ss_pred EEEEe
Q 001264 785 LVINF 789 (1112)
Q Consensus 785 ~VI~~ 789 (1112)
++|.-
T Consensus 175 ~lViD 179 (238)
T d1wrba1 175 YIVLD 179 (238)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 88853
No 147
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=61.66 E-value=2.5 Score=41.66 Aligned_cols=25 Identities=20% Similarity=-0.011 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.|+-++|.|++|+|||+..+-.+.+
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456888899999999754444443
No 148
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=61.54 E-value=4.5 Score=41.44 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=37.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp 598 (1112)
+.++||.||+..-+..++..+.+ .|..|++++|.+...++-.......+|||+|.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~----~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 45689999999988887776665 47789999998776665443344568999995
No 149
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=61.24 E-value=2.2 Score=39.37 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
++++++|+.|||||++.-
T Consensus 1 k~I~liG~~GsGKsTi~k 18 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLAR 18 (161)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 468999999999998644
No 150
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=59.91 E-value=1.6 Score=40.41 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
+-+|++|+.|||||+.+-.
T Consensus 7 ~iivl~G~~GsGKsT~a~~ 25 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASE 25 (171)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3477789999999986443
No 151
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=59.72 E-value=3 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|.-+++.|++|+|||+.++-.+++.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~ 50 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNG 50 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34668888999999997544444433
No 152
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=58.49 E-value=19 Score=33.49 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=52.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc------cccCCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------ARGLDVKE 782 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~------~~GlDi~~ 782 (1112)
.++++||++++..-+...+..+... +..+..+|++.....+...... ..|+|+|... ...+.+.+
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~i~t~~~~~~~~~~~~~~~~~ 125 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLED 125 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTTS
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhhc-----ccccccccchhHHHHhhhhhhccc
Confidence 3578999999999999888888764 4668889999999888776543 3588888322 23345556
Q ss_pred CcEEEE
Q 001264 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+++||.
T Consensus 126 ~~~vIi 131 (200)
T d1wp9a1 126 VSLIVF 131 (200)
T ss_dssp CSEEEE
T ss_pred cceEEE
Confidence 777764
No 153
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=58.38 E-value=2.1 Score=42.95 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=13.7
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
.+|+.||+|+|||..+
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999753
No 154
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=58.00 E-value=2.5 Score=39.72 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.++++|++|||||+++-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~ 19 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADR 19 (182)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 155
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=57.61 E-value=3.7 Score=34.97 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCCH
Q 001264 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKDQ 750 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~~ 750 (1112)
|...+.......++||||.+-..+..++..|...|+ ++..+.||+..
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~~ 95 (108)
T d1gmxa_ 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHhhhccccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHHH
Confidence 334444444567899999998889999999999999 58889998864
No 156
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=57.44 E-value=2.5 Score=40.04 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.+++.||+|||||+++-+
T Consensus 5 ~I~i~GppGsGKsT~a~~ 22 (189)
T d1zaka1 5 KVMISGAPASGKGTQCEL 22 (189)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 157
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=56.77 E-value=2.7 Score=39.24 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.++++|+.|||||++.-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~ 19 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEK 19 (182)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 158
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=56.68 E-value=22 Score=36.40 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=44.7
Q ss_pred HHHhhhcCceEEE-EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCc----
Q 001264 561 RKFAKVMGVRCVP-VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE---- 635 (1112)
Q Consensus 561 ~~~~~~~~i~~~~-~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~---- 635 (1112)
-.++...|+.+++ -+.|....+..-.....+-|+|.+|+.=-+ +... +...+.-.++|||==+|......+.
T Consensus 136 i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~-iQ~~--k~gilE~aDi~vvNKaD~~~~~~~~~~~~ 212 (323)
T d2qm8a1 136 MLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDE-LQGI--KKGIFELADMIAVNKADDGDGERRASAAA 212 (323)
T ss_dssp HHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------C--CTTHHHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred HHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhh-hhhh--hhhHhhhhheeeEeccccccchHHHHHHH
Confidence 3344555554332 233433333322223345678888875221 1111 1112333456776655542111111
Q ss_pred hhHHHHHHhcC-----CCCcEEEEeccccHHHHHHHH
Q 001264 636 PQITRIVQNIR-----PDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 636 ~~i~~il~~~~-----~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+...+..+. ....++.+||+-...+..+..
T Consensus 213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~ 249 (323)
T d2qm8a1 213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 249 (323)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHH
Confidence 11222233332 235788999986655544433
No 159
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.49 E-value=2.9 Score=40.85 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|+-+++.|++|||||+..+-
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq 53 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHT 53 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 346788899999999975443
No 160
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=56.48 E-value=3 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.007 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp 524 (1112)
+.++++|++|||||+++-+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~L 22 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGREL 22 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 56888999999999865543
No 161
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.96 E-value=2.8 Score=39.85 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
++++||+|||||+++-+
T Consensus 11 I~i~GppGSGKsT~a~~ 27 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEK 27 (196)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67789999999986543
No 162
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=55.82 E-value=1.7 Score=40.33 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|.-++++|.+|||||+++-
T Consensus 5 ~g~~I~l~G~~GsGKTTia~ 24 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIAR 24 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45567889999999998643
No 163
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.58 E-value=3 Score=39.66 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
|.-+++.|++|||||...+-.+.
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 45688889999999975444333
No 164
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=55.56 E-value=2.8 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++|+.|||||++.-
T Consensus 2 ~I~i~G~pGSGKsT~~~ 18 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQ 18 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999754
No 165
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=55.44 E-value=3.1 Score=39.51 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.2
Q ss_pred HHcCCCEEEEcCCCChHHHHHH
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~l 522 (1112)
+..++-+++.||+|||||+++-
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~ 26 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCE 26 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3455668889999999998654
No 166
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=54.84 E-value=3 Score=39.63 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.++++|+.|||||++.-.
T Consensus 8 rIiliG~PGSGKtT~a~~ 25 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSR 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588899999999987554
No 167
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.78 E-value=2.5 Score=39.78 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCChHHHH
Q 001264 504 GRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~ 520 (1112)
|+-++++||+|||||+.
T Consensus 2 G~iivl~GpsG~GK~tl 18 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTV 18 (182)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56688999999999985
No 168
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.77 E-value=2.6 Score=39.85 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+-+|++||+|+|||..
T Consensus 2 rpIvl~GpsG~GK~tl 17 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999974
No 169
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.42 E-value=20 Score=33.88 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
....++.+++...+......+... ++.+..++|+.........+ .....|||+|+- + ...+++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~Ili~TP~~l~~~l~~~~~~l~~l 144 (206)
T d1s2ma1 69 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 144 (206)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred cccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHh----cccceEEEECCcccccccccceeecccc
Confidence 457899999999998887777653 78899999999987665443 445889999932 2 246788899
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.++|.
T Consensus 145 ~~lV~ 149 (206)
T d1s2ma1 145 SLFIM 149 (206)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 98885
No 170
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.21 E-value=2.5 Score=39.52 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.1
Q ss_pred EEEEcCCCChHHHH
Q 001264 507 CIGVAKTGSGKTLA 520 (1112)
Q Consensus 507 vii~a~TGsGKT~~ 520 (1112)
+|++|.+|||||+.
T Consensus 17 iil~G~pGsGKST~ 30 (172)
T d1yj5a2 17 VVAVGFPGAGKSTF 30 (172)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999974
No 171
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=54.09 E-value=5.5 Score=36.46 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=16.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhc
Q 001264 508 IGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.|+|..|||||+ ++-.++..+..
T Consensus 5 ~I~G~~gSGKTT-li~~l~~~L~~ 27 (165)
T d1xjca_ 5 QVVGYKHSGKTT-LMEKWVAAAVR 27 (165)
T ss_dssp EEECCTTSSHHH-HHHHHHHHHHH
T ss_pred EEEeCCCCCHHH-HHHHHHHHHHh
Confidence 478999999996 35455555554
No 172
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=54.03 E-value=5.7 Score=35.55 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp 598 (1112)
+.++||.|+|+.-|.+++..+.. .|+.+..++++...... -.....|+|||.
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~----~G~~~~~~H~~~~~~~~---~~~~~~vlvaTd 86 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYRGLDVSVI---PTNGDVVVVATD 86 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHH----HTCEEEEECTTCCSCCC---TTSSCEEEEESS
T ss_pred CCCEEEEeCcHHHHHHHHHHHhc----cccchhhhhccchhhhh---hhhhcceeehhH
Confidence 45789999999999887776654 58899999998764321 123579999995
No 173
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.91 E-value=1.6 Score=41.34 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=14.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.-++++|.+|||||+.+-
T Consensus 20 ~vI~L~G~pGSGKTTiAk 37 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSM 37 (195)
T ss_dssp EEEEEESSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346678999999998544
No 174
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=53.44 E-value=5 Score=32.56 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=32.9
Q ss_pred cchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001264 1025 NARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~-t~~~~~~~i~~~tg~~i~~kG~y~~~~~~~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~ 1093 (1112)
.+...+ ..+.++.+|++.|||.|.+-. ... -..|.+.+......|+.+++.+|.+.
T Consensus 13 ~ig~vIG~gG~~Ik~i~~~tg~~I~Id~-----------d~g--~v~i~~~~~~~~~~a~~~a~~iI~aI 69 (84)
T d1tuaa1 13 RLGAVIGPRGEVKAEIMRRTGTVITVDT-----------ENS--MVIVEPEAEGIPPVNLMKAAEVVKAI 69 (84)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTEEEEEET-----------TTT--EEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred HcCeeecCCchhHHHHHHHHCCEEEEEc-----------CCC--eEEEecCCccccHHHHHHHHHHHHHH
Confidence 344443 357899999999999998820 112 23345555444455555555555443
No 175
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.30 E-value=3.3 Score=38.78 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.1
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.++++|+.|||||++.-+.
T Consensus 4 rIvl~G~pGSGKtT~a~~L 22 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNL 22 (180)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788899999999865443
No 176
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=53.28 E-value=3.1 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
++++|+.|||||+++-.
T Consensus 9 I~i~G~pGSGKsT~a~~ 25 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67789999999986543
No 177
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.80 E-value=3.9 Score=42.45 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Q 001264 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
.+..++.|.++ +..|+||||||...
T Consensus 67 lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 67 IVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCcceeeecccCCCCceec
Confidence 46677889874 44589999999864
No 178
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.58 E-value=3.4 Score=39.06 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
+++.||.|||||+++-+
T Consensus 4 I~i~GppGSGKsT~a~~ 20 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCAR 20 (194)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999987643
No 179
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=52.51 E-value=10 Score=37.57 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC---CCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001264 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---AAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~---~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++.|.-+++.|++|+|||+.++..++ ++....+. ....+..+||+.- -.-..++...+..+.
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~-~ia~g~~~~~~~~~~~~~vl~~~~-E~~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHALG 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH-HHHcCCCcccccccCCCceEEEec-cchHHHHHHHHHHHh
Confidence 34567788899999999975544443 44432221 1122345666652 222344445555443
No 180
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=52.45 E-value=2.1 Score=39.54 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=25.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
+++.|+.|+|||+ |+-.++..+-- ..-|-.||-.|+.
T Consensus 36 i~L~G~LGaGKTt-fvr~~~~~lg~----------~~~V~SPTF~l~~ 72 (158)
T d1htwa_ 36 VYLNGDLGAGKTT-LTRGMLQGIGH----------QGNVKSPTYTLVE 72 (158)
T ss_dssp EEEECSTTSSHHH-HHHHHHHHTTC----------CSCCCCCTTTCEE
T ss_pred EEEecCCCccHHH-HHHHHHhhccc----------ccccCCCceEEEE
Confidence 5567999999995 66666666422 1236778887754
No 181
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=52.09 E-value=3.5 Score=38.50 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ll 523 (1112)
.+++.|+.|||||++.-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~ 19 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVK 19 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999996554
No 182
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=51.71 E-value=2.9 Score=38.78 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.6
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+-+++.|++|||||+..
T Consensus 2 kiI~i~G~~GsGKsT~~ 18 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSS 18 (190)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44677899999999753
No 183
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.15 E-value=3.3 Score=39.35 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.1
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+-+|++||+|||||..+
T Consensus 1 rpIvl~GPsGsGK~tl~ 17 (190)
T d1lvga_ 1 RPVVLSGPSGAGKSTLL 17 (190)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999853
No 184
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.39 E-value=4.1 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=32.5
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCCH
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKDQ 750 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~~ 750 (1112)
...++||||.+-..+..++..|...|+ +|..|.||+..
T Consensus 71 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~~ 109 (119)
T d1tq1a_ 71 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 109 (119)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHHH
Confidence 456899999988888899999999998 58899999853
No 185
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=50.33 E-value=42 Score=34.14 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=14.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHh
Q 001264 508 IGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
-|.|++|+|||. ++-.++.++.
T Consensus 58 gitG~pGaGKST-Li~~l~~~~~ 79 (327)
T d2p67a1 58 GVTGTPGAGKST-FLEAFGMLLI 79 (327)
T ss_dssp EEEECTTSCHHH-HHHHHHHHHH
T ss_pred EeeCCCCCCHHH-HHHHHHHHHH
Confidence 335999999996 3444444443
No 186
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=49.83 E-value=53 Score=30.39 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc------cccCCCCCCcEE
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------ARGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~------~~GlDi~~v~~V 786 (1112)
..+.+++.+++..-+...+..|...+.......+................+...|+++|... ........+.+|
T Consensus 64 ~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~l 143 (206)
T d1oywa2 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (206)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred ccCceEEeccchhhhhhHHHHHHhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeee
Confidence 46789999999999999999999999998888888888888888888888999999988421 223344456666
Q ss_pred EE
Q 001264 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 144 vi 145 (206)
T d1oywa2 144 AV 145 (206)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 187
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=49.68 E-value=3.4 Score=39.91 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
+|+-+|++||+|+|||...
T Consensus 1 ~G~livi~GPSG~GK~tl~ 19 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLI 19 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3667889999999999753
No 188
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=49.35 E-value=4.4 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=15.1
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|++|++|+|||++.-+.
T Consensus 3 ~IvliG~~G~GKSTig~~L 21 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRL 21 (165)
T ss_dssp SEEEECSTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 4788899999999865443
No 189
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.26 E-value=16 Score=34.98 Aligned_cols=69 Identities=9% Similarity=0.166 Sum_probs=44.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc------ccccCCCCCCc
Q 001264 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV------AARGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v------~~~GlDi~~v~ 784 (1112)
..+||+|++.+.+..+...+... .+.+..++++.+..++...+ ....|||+|+- -..++++.++.
T Consensus 79 ~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~IvI~TP~~l~~~~~~~~~~l~~l~ 153 (212)
T d1qdea_ 79 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTDKIK 153 (212)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred cceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-----cCCcEEEECCCccccccccCceecCcce
Confidence 48999999999999998888664 45566677766554443322 24689999932 23578899999
Q ss_pred EEEE
Q 001264 785 LVIN 788 (1112)
Q Consensus 785 ~VI~ 788 (1112)
++|.
T Consensus 154 ~lVl 157 (212)
T d1qdea_ 154 MFIL 157 (212)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9886
No 190
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=48.99 E-value=79 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.2
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHH
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.+++||+| -.|.+++ +..+...+....++.++|++||.-....
T Consensus 44 ~~dlil~D--~~mP~~~-G~el~~~lr~~~~~~pvI~lT~~~~~~~ 86 (140)
T d1qkka_ 44 FAGIVISD--IRMPGMD-GLALFRKILALDPDLPMILVTGHGDIPM 86 (140)
T ss_dssp CCSEEEEE--SCCSSSC-HHHHHHHHHHHCTTSCEEEEECGGGHHH
T ss_pred CcchHHHh--hccCCCC-HHHHHHHHHHhCCCCcEEEEECCCCHHH
Confidence 46789998 3466554 4444444555678899999999865443
No 191
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.92 E-value=6.2 Score=38.55 Aligned_cols=52 Identities=10% Similarity=-0.085 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
.|.-+++.|++|+|||+..+..+.+.... .. .......++++.....+...+
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLP-GA-GGYPGGKIIFIDTENTFRPDR 87 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSC-BT-TTBCCCEEEEEESSSCCCHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhh-hh-cccccceEEEechHHHHHHHH
Confidence 34668889999999997544444333221 11 112234555555444443333
No 192
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=48.62 E-value=6.1 Score=37.68 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=20.4
Q ss_pred CEEEEcC-CCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001264 506 DCIGVAK-TGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 506 dvii~a~-TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.++|+|- ||.|||++.+..+. .+.. .|.+++++
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~-aLa~-------~G~rVl~i 36 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQ-AAKA-------AGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHH-HHHH-------TTCCEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHH-HHHH-------CCCeEEEE
Confidence 4667775 79999986554333 3332 26667775
No 193
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=48.22 E-value=23 Score=33.44 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhc--------------------------CceEEEEeCCCChHHHH---HHHhc-
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVM--------------------------GVRCVPVYGGSGVAQQI---SELKR- 589 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~--------------------------~i~~~~~~gg~~~~~~~---~~l~~- 589 (1112)
+..+||.||||..|..++..+..+.... ...+++.+||.+..... ..+..
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g 119 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 119 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCC
Confidence 3457788888776666665555433211 11256678887765442 22233
Q ss_pred CCeEEEeCchHHHHHHHhcCCCccccCCceEEEec
Q 001264 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 590 g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
...|||||... .. -.++....+||.+
T Consensus 120 ~i~vlvaT~~l-----~~----Gin~p~~~vvi~~ 145 (201)
T d2p6ra4 120 NIKVVVATPTL-----AA----GVNLPARRVIVRS 145 (201)
T ss_dssp SCCEEEECSTT-----TS----SSCCCBSEEEECC
T ss_pred CceEEEechHH-----Hh----hcCCCCceEEEec
Confidence 46999999752 11 1567767777764
No 194
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.75 E-value=6.3 Score=34.72 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=33.1
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001264 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~ 749 (1112)
...+++|||.+-..+...+..|...||.+..|.||+.
T Consensus 79 ~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~ 115 (130)
T d1yt8a4 79 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 115 (130)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred ccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchH
Confidence 4568999999988899999999999999999999985
No 195
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=47.71 E-value=2.7 Score=43.90 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.+.++|++|++|+|||+.
T Consensus 27 ~~h~vLl~G~pG~GKT~l 44 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTA 44 (333)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCCeEEEECCCCccHHHH
Confidence 457899999999999974
No 196
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=47.27 E-value=7.5 Score=37.68 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l 529 (1112)
+++.|+.|||||+ ++-.+++++
T Consensus 3 i~v~G~~GsGKTT-Ll~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTT-LTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHH-HHHHHHHHH
T ss_pred EEEEcCCCCcHHH-HHHHHHHHH
Confidence 5678999999996 455566554
No 197
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=46.26 E-value=5.3 Score=41.96 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001264 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
-.|..++.|.++ +..|+||||||.+.
T Consensus 70 plv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 70 PTVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhhccCceeEEecccCCCCcceee
Confidence 345667788874 44589999999764
No 198
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=45.76 E-value=5.9 Score=41.78 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.2
Q ss_pred HHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 497 ALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 497 ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
.+..++.|.++.+ .|+||||||.+.+
T Consensus 105 lv~~~l~G~n~tifaYGqTGSGKTyTm~ 132 (362)
T d1v8ka_ 105 LVQTIFEGGKATCFAYGQTGSGKTHTMG 132 (362)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhccCceEEeeccCCCCCceeee
Confidence 4566778877444 4899999998744
No 199
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=45.75 E-value=5.3 Score=41.89 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Q 001264 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
.+..++.|.++ +..|.||||||.+.
T Consensus 78 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 78 MLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCceeeeeccCCCCCceee
Confidence 45667888874 44589999999763
No 200
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=45.57 E-value=4.8 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHHHHcCCCEE--EEcCCCChHHHHH
Q 001264 497 ALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 497 ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
.+..++.|.++. ..|+||||||.+.
T Consensus 66 lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 66 LVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCceeeeccccCCCCccccc
Confidence 466778888744 4489999999764
No 201
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.51 E-value=8.9 Score=37.04 Aligned_cols=72 Identities=13% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
..++||+|++++-|..++..+... ++.+..++++...... ......+...|||+|+- + ...+.+.++
T Consensus 80 ~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l 156 (218)
T d2g9na1 80 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156 (218)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCST---TTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHH---HHHHhcCCCEEEEeCChhHHHHHhcCCcccccc
Confidence 347999999999999888877653 5566666665432211 11223456789999952 2 245777788
Q ss_pred cEEEE
Q 001264 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 157 ~~lVl 161 (218)
T d2g9na1 157 KMFVL 161 (218)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 88885
No 202
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.31 E-value=51 Score=27.83 Aligned_cols=83 Identities=13% Similarity=0.254 Sum_probs=46.3
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCce
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+|++|||=-...++..+...+ ...|+.+.+...|. ..+.++.. ..++
T Consensus 1 sPkILiVDD~~~~~~~l~~~L----~~~g~~v~~a~~~~---------------------eal~~~~~--------~~~d 47 (121)
T d1ys7a2 1 SPRVLVVDDDSDVLASLERGL----RLSGFEVATAVDGA---------------------EALRSATE--------NRPD 47 (121)
T ss_dssp CCEEEEECSCHHHHHHHHHHH----HHTTCEEEEESSHH---------------------HHHHHHHH--------SCCS
T ss_pred CCEEEEEECCHHHHHHHHHHH----HHCCCEEEEECCHH---------------------HHHHHHHh--------CCCC
Confidence 367888877666655444433 33465555443332 22333322 2367
Q ss_pred EEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 620 ~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+||+|= .|.+++ +..+...+....+...+|++||.-
T Consensus 48 lvl~D~--~mP~~~-G~el~~~ir~~~~~~piI~lt~~~ 83 (121)
T d1ys7a2 48 AIVLDI--NMPVLD-GVSVVTALRAMDNDVPVCVLSARS 83 (121)
T ss_dssp EEEEES--SCSSSC-HHHHHHHHHHTTCCCCEEEEECCC
T ss_pred EEEEEe--eccCcc-cHHHHHHHHhcCCCCEEEEEEeeC
Confidence 888883 344443 334444445566788899999874
No 203
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=45.19 E-value=0.71 Score=45.02 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCcEEEEccchhHHHH-----HHHHHHHHhhhc--CceEEEEeCCCChH---HHHHHHhcC-CeEEEeCchHHHHHHHh
Q 001264 539 DGPVGLIMAPTRELVQQ-----IHSDIRKFAKVM--GVRCVPVYGGSGVA---QQISELKRG-TEIVVCTPGRMIDILCT 607 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q-----~~~~~~~~~~~~--~i~~~~~~gg~~~~---~~~~~l~~g-~~IiV~Tp~~L~~~l~~ 607 (1112)
.|.++.||||..+=... ....+..+.+.+ ++++.+++|..+.. ..+..+..| ++|+|||. .+..
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt-----ViE~ 102 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VIEV 102 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CCCS
T ss_pred cCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh-----hhhc
Confidence 46788999997643222 112233333332 56777888886543 334555554 79999995 2222
Q ss_pred cCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc
Q 001264 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 608 ~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~ 645 (1112)
. .++.++++||+..|+++. ..++.++....
T Consensus 103 G----IDip~a~~iii~~a~~fg----lsqlhQlrGRv 132 (206)
T d1gm5a4 103 G----IDVPRANVMVIENPERFG----LAQLHQLRGRV 132 (206)
T ss_dssp C----SCCTTCCEEEBCSCSSSC----TTHHHHHHHTS
T ss_pred c----ccccCCcEEEEEccCCcc----HHHHHhhhhhe
Confidence 2 688899999999999842 33444544333
No 204
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.28 E-value=5.7 Score=41.97 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCE--EEEcCCCChHHHHH
Q 001264 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dv--ii~a~TGsGKT~~~ 521 (1112)
..|..++.|.++ +..|+||||||.+.
T Consensus 115 plv~~vl~G~n~ti~aYGqtGSGKT~Tm 142 (368)
T d2ncda_ 115 PLIQSALDGYNICIFAYGQTGSGKTYTM 142 (368)
T ss_dssp HHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcccceeEEeeccCCCccceEe
Confidence 356778888874 44589999999763
No 205
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=43.61 E-value=10 Score=37.82 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|+-+.+.|++|+|||...+..+... .. .+..++|+-
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~-q~-------~g~~~vyid 89 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAA-QR-------EGKTCAFID 89 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HH-------TTCCEEEEE
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH-Hc-------CCCEEEEEc
Confidence 3568888999999998655554444 32 245566665
No 206
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=43.52 E-value=8.6 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHH
Q 001264 487 YEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~ 520 (1112)
+..+-..-..++..++.| +.+++.||+|+|||+.
T Consensus 133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~ 170 (362)
T d1svma_ 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTL 170 (362)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHH
Confidence 433333333444445544 5688899999999974
No 207
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.23 E-value=4.8 Score=37.69 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+-+|++||+|+|||...
T Consensus 4 k~ivl~Gpsg~GK~tl~ 20 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIK 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45788999999999753
No 208
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=42.93 E-value=7.1 Score=38.62 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHcCCCEEEEcCCCChHHHH
Q 001264 499 PVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 499 ~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.+...+..|++.|++|+|||++
T Consensus 18 ~~a~~~~pvlI~Ge~GtGK~~~ 39 (247)
T d1ny5a2 18 KISCAECPVLITGESGVGKEVV 39 (247)
T ss_dssp HHTTCCSCEEEECSTTSSHHHH
T ss_pred HHhCCCCCEEEECCCCcCHHHH
Confidence 3444677899999999999963
No 209
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=42.67 E-value=6 Score=41.36 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEE--EEcCCCChHHHHH
Q 001264 496 QALPVIMSGRDCI--GVAKTGSGKTLAF 521 (1112)
Q Consensus 496 ~ai~~il~g~dvi--i~a~TGsGKT~~~ 521 (1112)
..+..++.|.++. ..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 71 PILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhccCCceEEeeeeccccceEEe
Confidence 3466778888744 4589999999764
No 210
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=42.44 E-value=5.7 Score=38.00 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++||.|+|||+.
T Consensus 26 ~Gei~~l~G~NGsGKSTL 43 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTL 43 (200)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 567788999999999973
No 211
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.28 E-value=39 Score=33.43 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH--------H---HHHHHhc-CCeEEEeCchHHHHHHH
Q 001264 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA--------Q---QISELKR-GTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~--------~---~~~~l~~-g~~IiV~Tp~~L~~~l~ 606 (1112)
.+.++||.|.++.-+.-++..+.. .++.+..+.|..... + .+..+.. .+.|+|+|.- +.
T Consensus 160 ~~~k~iiF~~~~~~~~~~~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~-----~~ 230 (286)
T d1wp9a2 160 QNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-----GE 230 (286)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-----GG
T ss_pred CCCcEEEEeCcHHhHHHHHHHHHH----cCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccc-----ee
Confidence 356899999999988877665544 577777777654321 1 1333443 4689999942 22
Q ss_pred hcCCCccccCCceEEEe
Q 001264 607 TSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 607 ~~~~~~~~l~~i~~vVi 623 (1112)
.+ .++..+.+||+
T Consensus 231 ~G----ld~~~~~~Vi~ 243 (286)
T d1wp9a2 231 EG----LDVPEVDLVVF 243 (286)
T ss_dssp GG----GGSTTCCEEEE
T ss_pred cc----ccCCCCCEEEE
Confidence 21 67888988885
No 212
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=40.84 E-value=5.8 Score=39.17 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCChHHH
Q 001264 503 SGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~ 519 (1112)
.|.-+.++|++|||||+
T Consensus 28 ~Ge~vaIvG~sGsGKST 44 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKST 44 (241)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999997
No 213
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=40.55 E-value=6.4 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
+|+.|..|||||++.-
T Consensus 4 ivi~G~~GsGKTT~~~ 19 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4677999999997543
No 214
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=40.21 E-value=6.4 Score=41.11 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCEEE--EcCCCChHHHHHH
Q 001264 496 QALPVIMSGRDCIG--VAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il~g~dvii--~a~TGsGKT~~~l 522 (1112)
..+..++.|.+..+ .|.||||||...+
T Consensus 73 ~~v~~~l~G~n~~i~aYGqtgSGKT~T~~ 101 (342)
T d1f9va_ 73 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 101 (342)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred hhhcchhcccccceeeeeccCCccccccc
Confidence 35666778887444 5899999998754
No 215
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.06 E-value=5.6 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.2
Q ss_pred EEEEcCCCChHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 507 vii~a~TGsGKT~~~l 522 (1112)
++++|.+|||||+.+-
T Consensus 5 i~l~GlpgsGKSTla~ 20 (213)
T d1bifa1 5 IVMVGLPARGKTYISK 20 (213)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5778999999998654
No 216
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=39.76 E-value=5.5 Score=37.19 Aligned_cols=16 Identities=31% Similarity=0.148 Sum_probs=12.0
Q ss_pred CCEE-EEcCCCChHHHH
Q 001264 505 RDCI-GVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvi-i~a~TGsGKT~~ 520 (1112)
+-+| |.|++|||||+.
T Consensus 22 ~~iIgI~G~~GSGKSTl 38 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTL 38 (198)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 3345 569999999974
No 217
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=39.40 E-value=6.6 Score=38.05 Aligned_cols=26 Identities=23% Similarity=0.038 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|.-+++.|++|+|||+..+-.+.+.
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34568888999999997655555444
No 218
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.03 E-value=6.4 Score=39.11 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++|++|||||+.
T Consensus 39 ~Ge~vaivG~sGsGKSTL 56 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTV 56 (251)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999973
No 219
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.99 E-value=37 Score=32.37 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
.|+.|--|||||+ ++..++
T Consensus 6 ~iitGFLGaGKTT-ll~~lL 24 (222)
T d1nija1 6 TLLTGFLGAGKTT-LLRHIL 24 (222)
T ss_dssp EEEEESSSSSCHH-HHHHHH
T ss_pred EEEeeCCCCCHHH-HHHHHH
Confidence 5778999999997 444443
No 220
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=38.88 E-value=7.1 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=14.0
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++||||+|||..+-
T Consensus 54 ~~lf~Gp~GvGKT~lak 70 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTV 70 (315)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCcchhHHHHH
Confidence 48889999999997544
No 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=37.40 E-value=6.7 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++|++|||||+.
T Consensus 43 ~Ge~vaivG~sGsGKSTL 60 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTL 60 (255)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577789999999999974
No 222
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=37.33 E-value=1.2e+02 Score=28.71 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh
Q 001264 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~ 588 (1112)
...|||... ++-++..+.. .|.++||.|....-..-+...+.. ..++.+..++|+.+..+. +..+.
T Consensus 65 ~~~S~K~~~-l~~~l~~~~~-------~g~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~i~G~~~~~~R~~~i~~F~ 133 (244)
T d1z5za1 65 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEK---ELNTEVPFLYGELSKKERDDIISKFQ 133 (244)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHH---HHCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhHHHH-HHHHHHhhcc-------cccceEEEeeceehHHHHHHHHHh---hccceEEEEecccchhccchhhhhhh
Confidence 456899754 5555555443 266789999877655433333322 347778888999876543 34443
Q ss_pred c--CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 589 R--GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 589 ~--g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
. ++.++|+|+... +.-.+|.....+|+=+.+
T Consensus 134 ~~~~~~vll~~~~~~--------g~Glnl~~a~~vi~~~~~ 166 (244)
T d1z5za1 134 NNPSVKFIVLSVKAG--------GFGINLTSANRVIHFDRW 166 (244)
T ss_dssp HCTTCCEEEEECCTT--------CCCCCCTTCSEEEECSCC
T ss_pred ccccchhcccccccc--------ccccccchhhhhhhcCch
Confidence 3 357888887531 222466666666644333
No 223
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=37.13 E-value=6.9 Score=38.94 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++|++|||||+.
T Consensus 40 ~Ge~iaivG~sGsGKSTL 57 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTI 57 (253)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 577788999999999974
No 224
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.92 E-value=19 Score=35.92 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=26.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001264 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|+-+.+.|+.|||||...+..+... .. .+..+++|-.--.+
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~-q~-------~g~~~vyIDtE~~~ 100 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANA-QA-------AGGVAAFIDAEHAL 100 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHH-HH-------TTCEEEEEESSCCC
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHH-hc-------CCCEEEEEECCccC
Confidence 35678888999999997655544433 22 25566766543334
No 225
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.74 E-value=29 Score=34.26 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||.|+|||+.
T Consensus 42 ~giLL~Gp~GtGKT~l 57 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLL 57 (265)
T ss_dssp CEEEEBCCTTSSHHHH
T ss_pred CeEEEECCCCCcchhH
Confidence 5699999999999974
No 226
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.60 E-value=6.9 Score=37.42 Aligned_cols=13 Identities=31% Similarity=0.228 Sum_probs=10.5
Q ss_pred EEcCCCChHHHHH
Q 001264 509 GVAKTGSGKTLAF 521 (1112)
Q Consensus 509 i~a~TGsGKT~~~ 521 (1112)
|.|++|||||+.+
T Consensus 7 I~G~~gSGKSTla 19 (213)
T d1uj2a_ 7 VSGGTASGKSSVC 19 (213)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4599999999743
No 227
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=36.24 E-value=7.6 Score=36.28 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|+-++++|+.|+|||..++
T Consensus 14 ~g~gvli~G~sG~GKS~lal 33 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECAL 33 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56779999999999997654
No 228
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=35.87 E-value=7.5 Score=38.02 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHH
Q 001264 503 SGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~ 519 (1112)
.|.-+.++||+|||||+
T Consensus 30 ~Ge~~~iiG~sGsGKST 46 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKST 46 (230)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCcch
Confidence 56678889999999996
No 229
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=35.84 E-value=8.7 Score=36.59 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=14.0
Q ss_pred EEEE-cCCCChHHHHHHHHH
Q 001264 507 CIGV-AKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~-a~TGsGKT~~~llp~ 525 (1112)
+|++ ||.|||||+++-+.+
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4444 999999999765444
No 230
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.35 E-value=9.3 Score=38.54 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++|++|||||+.
T Consensus 61 ~Ge~vaivG~nGsGKSTL 78 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSL 78 (281)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 466788899999999973
No 231
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=33.80 E-value=7.5 Score=38.36 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=21.3
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCC
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~ 649 (1112)
+-.+||+||.-.-+|......+..++..+..+.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~ 189 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKALDSLMKGR 189 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTS
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHcCCC
Confidence 445777777776666666666666666665443
No 232
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=33.51 E-value=9.3 Score=35.61 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|+-++++|+.|+|||.+++
T Consensus 13 ~g~gvl~~G~sG~GKStlal 32 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETAL 32 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHH
Confidence 56779999999999997654
No 233
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.25 E-value=25 Score=29.80 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 001264 1060 AGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTN 1095 (1112)
Q Consensus 1060 ~~~~~~~Lyl~ie~~~~~~v~~a~~~i~~~~~e~~~ 1095 (1112)
|...||.|-++|||.+...++.-..+|+.+|.+...
T Consensus 63 pSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~~~~~ 98 (112)
T d1wjwa_ 63 PSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAG 98 (112)
T ss_dssp CSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 445689999999999999999999999999987754
No 234
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
Probab=32.99 E-value=9.3 Score=33.90 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKD 749 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~ 749 (1112)
..++||||.+-..+..++..|...|| +|..|.||+.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~nV~~l~GG~~ 118 (137)
T d1qxna_ 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred ccceeeeecccchHHHHHHHHHHcCCCcEEEecCHHH
Confidence 45899999988888999999999999 5888999964
No 235
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=32.98 E-value=19 Score=36.69 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=10.0
Q ss_pred EEcCCCChHHHH
Q 001264 509 GVAKTGSGKTLA 520 (1112)
Q Consensus 509 i~a~TGsGKT~~ 520 (1112)
|+|+.|||||+.
T Consensus 85 IaG~sgSGKSTl 96 (308)
T d1sq5a_ 85 IAGSVAVGKSTT 96 (308)
T ss_dssp EEECTTSSHHHH
T ss_pred EeCCCCCCCcHH
Confidence 458999999974
No 236
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=32.87 E-value=8.5 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHH
Q 001264 503 SGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~ 519 (1112)
.|.-+.++||+|||||+
T Consensus 30 ~Ge~~~iiG~sGsGKST 46 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKST 46 (240)
T ss_dssp SSCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678889999999997
No 237
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=32.67 E-value=36 Score=31.26 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=45.5
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch-hHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001264 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR-ELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr-eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
+.++.++|+|-=|+||++++.+... ++.-++|+... +-+......+.++...++..+. +..-...
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~-------------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~ 81 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIE-------------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQ 81 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-------------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEE-EEETTCH
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhc-------------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceE-eeecccc
Confidence 3678999999999999876554332 44556665432 2234444445555555554433 2332222
Q ss_pred HHHHHHHhcCCeEEE-eCch
Q 001264 581 AQQISELKRGTEIVV-CTPG 599 (1112)
Q Consensus 581 ~~~~~~l~~g~~IiV-~Tp~ 599 (1112)
..+......++||| |||-
T Consensus 82 -~~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 82 -QAFAEALASADILTNGTKV 100 (182)
T ss_dssp -HHHHHHHHTCSEEEECSST
T ss_pred -cchhhhhcccceeccccCC
Confidence 23333334567776 7774
No 238
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=32.39 E-value=9.7 Score=35.22 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
.|+-++++|+.|+|||..++
T Consensus 14 ~g~gvli~G~sg~GKS~la~ 33 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETAL 33 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHH
Confidence 56789999999999997544
No 239
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=31.70 E-value=44 Score=29.57 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHhhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001264 702 LRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 702 ~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~~~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
..+..++.+.+. +.+++|+|++.+.+..|-..|=...-...+=|+-.... ......|+|+|+-.. ..
T Consensus 23 ~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---------~~~~~PI~l~~~~~~---~~ 90 (147)
T d1em8a_ 23 QLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQKR---SS 90 (147)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCS---------STTCCSEEEECTTSC---CC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhCCCCcccccccccCCC---------ccCCCCEEecCCCCC---CC
Confidence 345556665554 45999999999999999999955432222233311100 023467999885321 22
Q ss_pred CCCcEEEEeCC
Q 001264 781 KELELVINFDA 791 (1112)
Q Consensus 781 ~~v~~VI~~~~ 791 (1112)
...+++||.+.
T Consensus 91 ~~~dvlinl~~ 101 (147)
T d1em8a_ 91 SRRDILISLRT 101 (147)
T ss_dssp SCCSEEEECCS
T ss_pred ccceEEEECCC
Confidence 34567888764
No 240
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=31.38 E-value=60 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=12.8
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-+.|+|.-|.|||+.+
T Consensus 46 ~v~I~GmgGiGKTtLA 61 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIA 61 (277)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999753
No 241
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.02 E-value=12 Score=36.42 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++||.|||||+.
T Consensus 25 ~Gei~~liGpsGsGKSTL 42 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTL 42 (232)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 466788899999999963
No 242
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=31.00 E-value=12 Score=36.62 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+-++||+|||||+.
T Consensus 28 ~Ge~~~liG~sGaGKSTl 45 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTT 45 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 566778889999999973
No 243
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=30.68 E-value=12 Score=35.66 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=13.5
Q ss_pred EEcCCCChHHHHHHHHHH
Q 001264 509 GVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l 526 (1112)
|-||.|||||+++-+.+-
T Consensus 8 IdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 8 IDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EECSSCSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 449999999997665443
No 244
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=30.51 E-value=21 Score=35.43 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
|+-+.+.|+.|||||...+..+. .... .|..|+++---
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~-~aqk-------~g~~v~yiDtE 94 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVA-QAQK-------AGGTCAFIDAE 94 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH-HHHH-------TTCCEEEEESS
T ss_pred ceEEEEecCCccchHHHHHHHHH-HHHh-------CCCEEEEEECC
Confidence 35677789999999985544444 3333 24567777543
No 245
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.41 E-value=10 Score=37.17 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++||.|||||+.
T Consensus 31 ~Ge~~~liGpsGaGKSTL 48 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTT 48 (239)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 466688899999999973
No 246
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=30.04 E-value=21 Score=35.38 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=23.5
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001264 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
-+++.|.=|.|||++.+..++.... .|.++|+|-
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA~~lA~--------~G~rVLlvD 43 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATAIRLAE--------QGKRVLLVS 43 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEE
T ss_pred EEEEECCCcChHHHHHHHHHHHHHH--------CCCCEEEEe
Confidence 4667799999999976665554422 256777766
No 247
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=29.71 E-value=10 Score=38.85 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 001264 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.++++||||+|||..+-
T Consensus 55 ~~lf~Gp~G~GKt~lak 71 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAK 71 (315)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCcchHHHHHH
Confidence 36778999999997544
No 248
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=29.51 E-value=11 Score=35.34 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.3
Q ss_pred EEEEcCCCChHHHH
Q 001264 507 CIGVAKTGSGKTLA 520 (1112)
Q Consensus 507 vii~a~TGsGKT~~ 520 (1112)
+++.|..|||||++
T Consensus 12 I~ieG~~GsGKTTl 25 (197)
T d2vp4a1 12 VLIEGNIGSGKTTY 25 (197)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45569999999974
No 249
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=29.37 E-value=11 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+-++||.|+|||+.
T Consensus 31 ~Gei~~liGpnGaGKSTl 48 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566778889999999974
No 250
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=28.60 E-value=86 Score=31.34 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-CCCeeee-------cCCC-----CHHHHHHHHHHhhcCCccEEEecCcc
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKH-GYPCLSL-------HGAK-----DQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-~~~~~~i-------hg~~-----~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
.+++||.|++...|..|+..|... +-.+..+ +... -...|..++..+.++...|||+|-.+
T Consensus 14 ~~p~lvv~~~~~~A~~l~~~L~~~~~~~v~~fP~~e~lpyd~~s~~~~i~~~R~~~L~~l~~~~~~iiits~~a 87 (308)
T d2b2na1 14 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNT 87 (308)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHTTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCceEEcCCcccCccccCCCChHHHHHHHHHHHHHhhcCCceEEeechh
Confidence 579999999999999999999764 2222222 1111 12578889999999988899988433
No 251
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=28.29 E-value=12 Score=36.28 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++||.|||||+.
T Consensus 25 ~Ge~~~liGpsGaGKSTl 42 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLF 42 (229)
T ss_dssp TTCEEEEECCCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466688889999999973
No 252
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=28.26 E-value=4.9 Score=37.57 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.8
Q ss_pred EEEcCCCChHHHH
Q 001264 508 IGVAKTGSGKTLA 520 (1112)
Q Consensus 508 ii~a~TGsGKT~~ 520 (1112)
+|+|++|||||..
T Consensus 28 vi~G~NGsGKSti 40 (222)
T d1qhla_ 28 TLSGGNGAGKSTT 40 (222)
T ss_dssp HHHSCCSHHHHHH
T ss_pred EEECCCCCCHHHH
Confidence 5569999999974
No 253
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=27.86 E-value=47 Score=33.08 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHH---cCCCEEEEcCCCChHHHHHHH
Q 001264 496 QALPVIM---SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 496 ~ai~~il---~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+|..++ .|+.++|.|+.|+|||.....
T Consensus 32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~ 62 (289)
T d1xpua3 32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 62 (289)
T ss_dssp HHHHHHSCCBTTCEEEEEECSSSSHHHHHHH
T ss_pred eeeeecccccCCCeeeEeCCCCCCHHHHHHH
Confidence 5666665 799999999999999976443
No 254
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=27.74 E-value=11 Score=38.34 Aligned_cols=15 Identities=33% Similarity=0.208 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q 001264 507 CIGVAKTGSGKTLAF 521 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ 521 (1112)
.+++|++|||||..+
T Consensus 29 nvi~G~NGsGKS~il 43 (329)
T g1xew.1 29 TAIVGANGSGKSNIG 43 (329)
T ss_dssp EEEEECTTSSSHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 478999999999843
No 255
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=27.70 E-value=12 Score=38.64 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=15.4
Q ss_pred HcCCCE--EEEcCCCChHHHHHH
Q 001264 502 MSGRDC--IGVAKTGSGKTLAFV 522 (1112)
Q Consensus 502 l~g~dv--ii~a~TGsGKT~~~l 522 (1112)
..|.++ +..|+||||||.+.+
T Consensus 81 ~~G~n~~i~aYGqTGSGKTyTm~ 103 (330)
T d1ry6a_ 81 ENGCVCSCFAYGQTGSGKTYTML 103 (330)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHH
T ss_pred hcCCCeEEEeeeccccccceeee
Confidence 358764 445899999998744
No 256
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=27.54 E-value=25 Score=34.56 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=17.0
Q ss_pred cCCC-EEEEcCCCChHHHHHHHHHHHH
Q 001264 503 SGRD-CIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 503 ~g~d-vii~a~TGsGKT~~~llp~l~~ 528 (1112)
.++- +|++|.=|.|||++.+..+...
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA~~l 44 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIAVRL 44 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 4445999999998766554433
No 257
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.86 E-value=19 Score=32.47 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=32.2
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCC
Q 001264 711 WYEKGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKD 749 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~~~~-~~~~ihg~~~ 749 (1112)
.....++||||.+-..+..++..|...|+ ++..|.||+.
T Consensus 55 ~~~~~~vv~~c~~g~rs~~~a~~l~~~G~~~v~~L~GG~~ 94 (157)
T d1yt8a3 55 LGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTS 94 (157)
T ss_dssp HCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred cccCcceeeccCCcchHHHHHHHHhcccCceEEEecCCHH
Confidence 34567899999998888888998988887 7888999874
No 258
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.85 E-value=16 Score=35.82 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=11.1
Q ss_pred EEEEcCCCChHHH
Q 001264 507 CIGVAKTGSGKTL 519 (1112)
Q Consensus 507 vii~a~TGsGKT~ 519 (1112)
+.++||.|||||+
T Consensus 27 ~~liGpnGaGKST 39 (240)
T d2onka1 27 CVLLGPTGAGKSV 39 (240)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCChHHH
Confidence 4568999999997
No 259
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.84 E-value=79 Score=31.26 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.5
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHH
Q 001264 502 MSGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
..|+-+.+.++.|+|||...+-.+.
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHHH
Confidence 3789999999999999975443443
No 260
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=26.31 E-value=12 Score=38.29 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=23.3
Q ss_pred eEEEeccchhhhcCC--------CchhHHHHHHhc---CCCCcEEEEecccc
Q 001264 619 TYLVMDEADRMFDMG--------FEPQITRIVQNI---RPDRQTVLFSATFP 659 (1112)
Q Consensus 619 ~~vViDEah~~~~~~--------f~~~i~~il~~~---~~~~q~il~SAT~~ 659 (1112)
++|+|||+|.+.... -...+..++..+ .....++++.||-|
T Consensus 184 ~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence 489999999885311 122333343332 33345788888865
No 261
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}
Probab=26.31 E-value=93 Score=30.32 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=24.3
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001264 712 YEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
.++|.++|||++.+.+..+...|...|+.
T Consensus 195 KpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 195 KGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred CCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 35778899999999999999999877653
No 262
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=26.15 E-value=1.6e+02 Score=29.60 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh
Q 001264 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~ 588 (1112)
+-.|||.. .+.-++..+... .|.++||.+..+... ..+..++...|+.+..+.|+++..+. +..+.
T Consensus 97 ~~~S~Kl~-~L~~ll~~~~~~------~g~KvlIFs~~~~~l----d~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~ 165 (346)
T d1z3ix1 97 PQLSGKML-VLDYILAMTRTT------TSDKVVLVSNYTQTL----DLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFN 165 (346)
T ss_dssp GGGSHHHH-HHHHHHHHHHHH------CCCEEEEEESCHHHH----HHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred cccCHHHH-HHHHHHHHHHHh------cCCceeEEeehhhhh----HHHHHHHhhhhccccccccchhHHHHHHHHHhhh
Confidence 34589985 455555544321 356899998876543 45666677779999999999886543 44444
Q ss_pred cC---CeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 589 RG---TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 589 ~g---~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.+ ..|+++++.. ++.-.+|.....||+=+.+
T Consensus 166 ~~~~~~~vlLls~~a--------gg~GlnL~~a~~vi~~d~~ 199 (346)
T d1z3ix1 166 NPSSPEFIFMLSSKA--------GGCGLNLIGANRLVMFDPD 199 (346)
T ss_dssp STTCCCCEEEEEGGG--------SCTTCCCTTEEEEEECSCC
T ss_pred cccccceeeeecchh--------hhhccccccceEEEEecCC
Confidence 33 2356665431 1222567777777654433
No 263
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=26.14 E-value=1.7e+02 Score=24.23 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=28.7
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHH
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.+++||+| -.|.++. +..+...+....++.++|++|+.-.....
T Consensus 47 ~~dlii~D--~~mp~~~-G~el~~~l~~~~~~~piI~~t~~~~~~~~ 90 (123)
T d1krwa_ 47 TPDVLLSD--IRMPGMD-GLALLKQIKQRHPMLPVIIMTAHSDLDAA 90 (123)
T ss_dssp CCSEEEEC--CSSSSST-THHHHHHHHHHSSSCCEEESCCCSCHHHH
T ss_pred CCCEEEeh--hhcCCch-HHHHHHHHHHhCCCCeEEEEecCCCHHHH
Confidence 47899999 3355543 33444444455678889999998765543
No 264
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=25.70 E-value=23 Score=40.51 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHc---CCCEEEEcCCCChHHHHH
Q 001264 491 MPIQAQALPVIMS---GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 491 t~iQ~~ai~~il~---g~dvii~a~TGsGKT~~~ 521 (1112)
+.+=..|+..++. .+.+|+.|++|||||.+.
T Consensus 75 f~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~ 108 (710)
T d1br2a2 75 YAIADTAYRSMLQDREDQSILCTGESGAGKTENT 108 (710)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH
Confidence 3444566666553 456899999999999863
No 265
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.53 E-value=28 Score=30.42 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-C-eeeecCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGY-P-CLSLHGAKD 749 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~-~-~~~ihg~~~ 749 (1112)
..++++||.+-..+...+..|...|+ + +..|.||+.
T Consensus 80 ~~~iV~~C~~g~rs~~aa~~L~~~G~~~~V~~L~GG~~ 117 (136)
T d1yt8a1 80 RTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTI 117 (136)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHHTTCSSCEEEETTHHH
T ss_pred cceEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCcHH
Confidence 34799999999889999999999999 3 788999864
No 266
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.50 E-value=12 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+.++||.|||||+.
T Consensus 30 ~Ge~~~iiG~sGsGKSTl 47 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTF 47 (242)
T ss_dssp TTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566788899999999973
No 267
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.12 E-value=14 Score=34.86 Aligned_cols=16 Identities=44% Similarity=0.432 Sum_probs=13.9
Q ss_pred CCEEEEcCCCChHHHH
Q 001264 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.|+++|+.|+|||..
T Consensus 1 k~V~ivG~~~~GKTsL 16 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLL 16 (207)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4689999999999973
No 268
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Probab=24.96 E-value=33 Score=31.77 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=48.7
Q ss_pred HcCCCEEEEcC-CCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001264 502 MSGRDCIGVAK-TGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 502 l~g~dvii~a~-TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
++|+.+||.|. -|.|+.++..+.- .|..++++.=+.+-+.+....+..- ..+.+..+ ....
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~-------------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~--d~~~ 82 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAG-------------EGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAA--ETAD 82 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-------------TTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEE--ECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHh-------------hccchhhcccchHHHHHHHHHHHhc---cchhhhhh--hccc
Confidence 47888999975 5667776544321 2667777776666666665555442 23332222 2334
Q ss_pred HHHHHHHhcCCeEEEeCch
Q 001264 581 AQQISELKRGTEIVVCTPG 599 (1112)
Q Consensus 581 ~~~~~~l~~g~~IiV~Tp~ 599 (1112)
..++..+..+.||||.+-+
T Consensus 83 ~~~~~~~~~~iDilin~Ag 101 (191)
T d1luaa1 83 DASRAEAVKGAHFVFTAGA 101 (191)
T ss_dssp HHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHhcCcCeeeecCc
Confidence 5566666778899998755
No 269
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.90 E-value=18 Score=35.71 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=23.9
Q ss_pred cCCCCHHHHHHHHHHhh---cCCccEEEecCcccccCCCCCCcEEEEeC
Q 001264 745 HGAKDQTDRESTISDFK---SNVCNLLIATSVAARGLDVKELELVINFD 790 (1112)
Q Consensus 745 hg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~~~GlDi~~v~~VI~~~ 790 (1112)
...|++.....+++.++ .....|||+|---.. +..++.||.++
T Consensus 235 ~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~~~~---~~~~D~ii~l~ 280 (292)
T g1f2t.1 235 TPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL---KDAADHVIRIS 280 (292)
T ss_dssp SCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG---GGGCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeecHHH---HHhCCEEEEEE
Confidence 45677776666655553 222488888843322 22356676554
No 270
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.63 E-value=95 Score=25.93 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=27.1
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+++||+| -.|.+++ +..+...+....+...+|++|+.-...
T Consensus 45 ~~dlillD--~~mp~~~-g~~~~~~lr~~~~~~piI~lt~~~~~~ 86 (122)
T d1kgsa2 45 PFDVVILD--IMLPVHD-GWEILKSMRESGVNTPVLMLTALSDVE 86 (122)
T ss_dssp CCSEEEEE--SCCSSSC-HHHHHHHHHHTTCCCCEEEEESSCHHH
T ss_pred Cccccccc--cccccch-hHHHHHHHHhcCCCCcEEEEcCCCCHH
Confidence 46788888 2344443 334444455566778899999986443
No 271
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=24.46 E-value=14 Score=34.28 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=10.7
Q ss_pred EEcCCCChHHHHH
Q 001264 509 GVAKTGSGKTLAF 521 (1112)
Q Consensus 509 i~a~TGsGKT~~~ 521 (1112)
++|..|||||+++
T Consensus 8 itG~~gSGKstva 20 (191)
T d1uf9a_ 8 ITGNIGSGKSTVA 20 (191)
T ss_dssp EEECTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4599999999854
No 272
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=24.30 E-value=15 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+-++|+.|||||+.
T Consensus 27 ~GEi~~iiG~sGsGKSTL 44 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTF 44 (258)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466678889999999963
No 273
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=24.16 E-value=15 Score=34.88 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=11.1
Q ss_pred EEcCCCChHHHHH
Q 001264 509 GVAKTGSGKTLAF 521 (1112)
Q Consensus 509 i~a~TGsGKT~~~ 521 (1112)
++|..|||||++.
T Consensus 8 itG~igSGKStv~ 20 (208)
T d1vhta_ 8 LTGGIGSGKSTVA 20 (208)
T ss_dssp EECCTTSCHHHHH
T ss_pred EECCCcCCHHHHH
Confidence 5799999999854
No 274
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.05 E-value=18 Score=38.02 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001264 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
.+|+|++|||||..+-...+
T Consensus 28 ~~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
No 275
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.04 E-value=32 Score=32.47 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
|.-+++.|+-|||||++.-+ +...+..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~-L~~~L~~ 29 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRK-LVEALCA 29 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 44455569999999986443 3344433
No 276
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=24.03 E-value=26 Score=34.81 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp 598 (1112)
+.++||.||++.-+..++..+.+ .++.+..++|+...............++|+|.
T Consensus 178 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT~ 232 (305)
T d2bmfa2 178 KGKTVWFVPSIKAGNDIAACLRK----NGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTD 232 (305)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCCEECCTTCHHHHGGGGGTSCCSEEEECG
T ss_pred CCCEEEEeccHHHHHHHHHHHHh----CCCCEEEeCCcChHHHHhhhhccchhhhhhhH
Confidence 45689999999988877776655 46777888887754433333334568999996
No 277
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=23.86 E-value=1.9e+02 Score=24.02 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccc
Q 001264 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+++||+|- .|.+++ +..+...+....+..+++++|+.-
T Consensus 45 ~~~dliilD~--~mp~~~-G~~~~~~i~~~~~~~~ii~lt~~~ 84 (128)
T d1yioa2 45 EQHGCLVLDM--RMPGMS-GIELQEQLTAISDGIPIVFITAHG 84 (128)
T ss_dssp TSCEEEEEES--CCSSSC-HHHHHHHHHHTTCCCCEEEEESCT
T ss_pred cCCCEeehhh--hcccch-hHHHHHHHHhhCCCCeEEEEEEEC
Confidence 3578899984 344443 344455566677888999998874
No 278
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=23.63 E-value=14 Score=35.86 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+-++|+.|+|||+.
T Consensus 24 ~Gei~~iiG~nGaGKSTL 41 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTL 41 (231)
T ss_dssp TTCEEECBCCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566777889999999984
No 279
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=23.37 E-value=26 Score=29.57 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC-eeeecCCCC
Q 001264 714 KGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKD 749 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~~~~-~~~ihg~~~ 749 (1112)
..++|+||.+=..+-.++..|...|+. +..|.|++.
T Consensus 82 ~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~ 118 (120)
T d1urha2 82 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 118 (120)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred cCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChh
Confidence 458999999877788888888888984 888899875
No 280
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=23.24 E-value=16 Score=34.56 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001264 504 GRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
|+-+++.|.-|||||++.-+ +..++.
T Consensus 2 gkfIviEG~dGsGKsT~~~~-L~~~L~ 27 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNV-VVETLE 27 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHHH
Confidence 56677779999999986433 334443
No 281
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=23.01 E-value=16 Score=34.46 Aligned_cols=13 Identities=38% Similarity=0.286 Sum_probs=10.9
Q ss_pred EEcCCCChHHHHH
Q 001264 509 GVAKTGSGKTLAF 521 (1112)
Q Consensus 509 i~a~TGsGKT~~~ 521 (1112)
++|..|||||++.
T Consensus 7 ITG~igSGKStv~ 19 (205)
T d1jjva_ 7 LTGGIGSGKTTIA 19 (205)
T ss_dssp EECSTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 5799999999853
No 282
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.98 E-value=20 Score=36.13 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.1
Q ss_pred CEEEEcCCCChHHHHH
Q 001264 506 DCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~ 521 (1112)
-.+++|+.|||||..+
T Consensus 25 ~~vi~G~NgsGKTtil 40 (369)
T g1ii8.1 25 INLIIGQNGSGKSSLL 40 (369)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578899999999753
No 283
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.94 E-value=24 Score=35.41 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=9.4
Q ss_pred EcCCCChHHHH
Q 001264 510 VAKTGSGKTLA 520 (1112)
Q Consensus 510 ~a~TGsGKT~~ 520 (1112)
.|++|||||+.
T Consensus 33 ~G~qGSGKSTl 43 (286)
T d1odfa_ 33 SGPQGSGKSFT 43 (286)
T ss_dssp ECCTTSSHHHH
T ss_pred ECCCCCCHHHH
Confidence 58999999963
No 284
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=22.81 E-value=28 Score=36.69 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=35.7
Q ss_pred eEE-EEeCCHHHHHHHHHHHHhcCCCe----------------eeecCCCCHHHHHHHHHHhh
Q 001264 716 KIL-IFVHSQEKCDALFRDLLKHGYPC----------------LSLHGAKDQTDRESTISDFK 761 (1112)
Q Consensus 716 ~vL-IF~~s~~~~~~l~~~L~~~~~~~----------------~~ihg~~~~~~R~~~~~~F~ 761 (1112)
+++ |++.+...+..++..|.+.|+-| +++|...+.++-+.+++.|.
T Consensus 329 pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ 391 (401)
T d1fc4a_ 329 AIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp SEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 554 77888888889999999987543 35688888888888887775
No 285
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.53 E-value=2e+02 Score=23.72 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceE
Q 001264 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|++||+=....++..+...+.. .|+.++.++.+.-.-.+ ..-..+++
T Consensus 3 p~ILiVDDd~~~~~~l~~~L~~--------------------------~g~~v~~a~~~~~al~~-------l~~~~~dl 49 (121)
T d1xhfa1 3 PHILIVEDELVTRNTLKSIFEA--------------------------EGYDVFEATDGAEMHQI-------LSEYDINL 49 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT--------------------------TTCEEEEESSHHHHHHH-------HHHSCCSE
T ss_pred CEEEEEECCHHHHHHHHHHHHH--------------------------CCCEEEEECChHHHHHH-------HHhcCCCE
Q ss_pred EEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001264 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 621 vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~l~~p~~i 676 (1112)
||+| -.|.+++=...+..+-.. ++..+|++|+.-.......+....-+-+..
T Consensus 50 ii~D--~~mp~~~G~~~~~~~r~~--~~~pii~lt~~~~~~~~~~a~~~Ga~dyl~ 101 (121)
T d1xhfa1 50 VIMD--INLPGKNGLLLARELREQ--ANVALMFLTGRDNEVDKILGLEIGADDYIT 101 (121)
T ss_dssp EEEC--SSCSSSCHHHHHHHHHHH--CCCEEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred EEee--cccCCccCcHHHHHHHhc--CCCcEEEEECCCCHHHHHHHHHcCCCEEEe
No 286
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}
Probab=22.34 E-value=3.1e+02 Score=25.87 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred HcCCCEEEE-cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001264 502 MSGRDCIGV-AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 502 l~g~dvii~-a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
|.|+-+||. |-.|-|+-++-.+.-- |..++++.-+.+-+....+.+.. .+..+..+......
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~-------------G~~V~i~~r~~~~l~~~~~~~~~----~~~~~~~~~~D~s~ 66 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGL-------------GARVYTCSRNEKELDECLEIWRE----KGLNVEGSVCDLLS 66 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHH----TTCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHh----cCCCceEEEeecCC
Q ss_pred HHHHHHHhc--------CCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccchhhhcCCCchhHHHHHHhc-----CC
Q 001264 581 AQQISELKR--------GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-----RP 647 (1112)
Q Consensus 581 ~~~~~~l~~--------g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~~f~~~i~~il~~~-----~~ 647 (1112)
.+++..+.. ..+|+|.+.+. .....+.-+-.|+.+.+++..+...+..+-..+ +.
T Consensus 67 ~~~~~~~~~~~~~~~~g~idilinnag~------------~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~ 134 (258)
T d1ae1a_ 67 RTERDKLMQTVAHVFDGKLNILVNNAGV------------VIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ 134 (258)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEEEECCCC------------CCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccc------------cccCccccCCHHHHhhhhhhcccccccccccccccccccc
Q ss_pred CCcEEEEecc------------------ccHHHHHHHHHhcCCCeEEEecCccccccCceEEEEecccchhHHHHHHHHh
Q 001264 648 DRQTVLFSAT------------------FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709 (1112)
Q Consensus 648 ~~q~il~SAT------------------~~~~~~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~ 709 (1112)
.-.+|.+|.+ +-.-...++..+....+.+..-..+.+...+.....-..... ....+.+.
T Consensus 135 ~g~ii~isS~~~~~~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~--~~~~~~~~ 212 (258)
T d1ae1a_ 135 NGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQ--KEEIDNFI 212 (258)
T ss_dssp SEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------C--HHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhh--HHHHHHHH
Q ss_pred hhhcCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCC
Q 001264 710 EWYEKGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKD 749 (1112)
Q Consensus 710 ~~~~~~~vLIF~~s~~~~~~l~~~L~~~-----~~~~~~ihg~~~ 749 (1112)
...+-++ ..+.+++-.++.+|... .=..+.+.||++
T Consensus 213 ~~~plgR----~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 253 (258)
T d1ae1a_ 213 VKTPMGR----AGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 253 (258)
T ss_dssp HHSTTCS----CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hcCCCCC----CcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCee
No 287
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=22.16 E-value=38 Score=33.86 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001264 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.++||.|+|+..|.++...+.. .|+++..++++.+..
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~----~Gi~a~~~Hgglsq~ 73 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYRGLDVS 73 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCGG
T ss_pred CCCEEEECCcHHHHHHHHHHHHH----CCCCEEEEeCCchHH
Confidence 45789999999999988776655 588999999887653
No 288
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=21.85 E-value=16 Score=34.78 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=13.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 001264 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
.-++++|.+|||||+.+
T Consensus 25 ~vIwltGlsGsGKTTia 41 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLA 41 (208)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34777899999999754
No 289
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.63 E-value=24 Score=31.91 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=12.0
Q ss_pred EEEEcCCCChHHH
Q 001264 507 CIGVAKTGSGKTL 519 (1112)
Q Consensus 507 vii~a~TGsGKT~ 519 (1112)
++++|+.|+|||.
T Consensus 6 ivvvG~~~vGKTs 18 (173)
T d2a5ja1 6 YIIIGDTGVGKSC 18 (173)
T ss_dssp EEEESSTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 7889999999996
No 290
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}
Probab=21.40 E-value=19 Score=31.67 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHH
Q 001264 507 CIGVAKTGSGKTLA 520 (1112)
Q Consensus 507 vii~a~TGsGKT~~ 520 (1112)
++++|+.|+|||..
T Consensus 3 ivlvG~~~vGKSsL 16 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTI 16 (160)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999963
No 291
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=21.36 E-value=60 Score=30.70 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCCccccCCceEEEeccch
Q 001264 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~g~~IiV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.+|..+...+......-+.-.+++.||. ||..|...|... ..+++++.++.+||-.
T Consensus 14 ~~a~~i~~~~~~~~~~~~~~~i~lsGG~------------------tp~~~y~~L~~~---~~~w~kv~~~~~DER~ 69 (218)
T d1vl1a_ 14 FVVEKIRTKMEKLLEEKDKIFVVLAGGR------------------TPLPVYEKLAEQ---KFPWNRIHFFLSDERY 69 (218)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECCST------------------THHHHHHHHTTS---CCCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCh------------------hHHHHHHHHHhc---CCCcceEEEEecceec
Confidence 3555555555665555566667788887 444444444332 2567889999999954
No 292
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=21.29 E-value=16 Score=33.10 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHH
Q 001264 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
-++++|.+|+|||..
T Consensus 15 kI~lvG~~~vGKTsL 29 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTL 29 (186)
T ss_dssp EEEEEEETTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 488999999999974
No 293
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=21.22 E-value=2e+02 Score=24.32 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=28.1
Q ss_pred CceEEEeccchhhhcCCCchhHHHHHHhcCCCCcEEEEeccccHH
Q 001264 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~~f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+++||+|= .|.++. +..+...+....++.++|++||.-...
T Consensus 44 ~~dlvilD~--~mp~~~-G~e~~~~lr~~~~~~piI~lT~~~~~~ 85 (137)
T d1ny5a1 44 HFNVVLLDL--LLPDVN-GLEILKWIKERSPETEVIVITGHGTIK 85 (137)
T ss_dssp CCSEEEEES--BCSSSB-HHHHHHHHHHHCTTSEEEEEEETTCHH
T ss_pred ccccchHHH--hhhhhh-HHHHHHHHHHhCCCCCEEEEECCCCHH
Confidence 478999992 354443 444555555667889999999985433
No 294
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.17 E-value=19 Score=35.44 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001264 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|.-+-++||.|+|||+.
T Consensus 29 ~Gei~~liG~nGaGKSTL 46 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTL 46 (254)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456677889999999973
No 295
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.47 E-value=3.1e+02 Score=25.29 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=25.5
Q ss_pred HHHhhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001264 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~~~~ 740 (1112)
..+..+....+..|||.+-..+-.+...|...|+.
T Consensus 163 ~~~~~~l~~~~~aii~~~d~~A~g~~~~l~~~g~~ 197 (255)
T d1byka_ 163 ENVAKVITPETTALLCATDTLALGASKYLQEQRID 197 (255)
T ss_dssp HHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCccceeeccchhhHhhHHHHHHHhCcc
Confidence 44444445567789999988888888888877653
No 296
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=20.05 E-value=31 Score=39.18 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH---cCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001264 492 PIQAQALPVIM---SGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 492 ~iQ~~ai~~il---~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+=..|+..+. ..+.+|+.|++|||||.+.= .+++++
T Consensus 71 ~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k-~il~yL 110 (684)
T d1lkxa_ 71 ALANDAYRSMRQSQENQCVIISGESGAGKTEASK-KIMQFL 110 (684)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHH-HHHHHH
Confidence 33345555554 23568889999999998644 344444
Done!