BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001266
(1112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility protein homolog OS=Mus musculus
GN=Brca2 PE=1 SV=2
Length = 3329
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 236/478 (49%), Gaps = 41/478 (8%)
Query: 514 GAEALFNMLAQS-GASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEE 572
G E + L + G + S +WV+NHY+WIVWKLA E + + A + L VL +
Sbjct: 2517 GKEEFYRALCDTPGVDPKLISSIWVANHYRWIVWKLAAMEFAFPKEFANRCLNPERVLLQ 2576
Query: 573 LKYRYEREVNNGHRSAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSY 632
LKYRY+ E++N RSA+K+ILE D + +VLCIS I ET +G + +
Sbjct: 2577 LKYRYDVEIDNSRRSALKKILERDDTAAKTLVLCISDIISPSTKVSETSGGKTSGEDANK 2636
Query: 633 AAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVGQKLRIWGAILCGWVGPVSPLEASGSIS 692
+ELTDGWY+V A LD L + +GKL VGQK+ GA L G +PLEA S+
Sbjct: 2637 VDTIELTDGWYAVRAQLDPPLMALVKSGKLTVGQKIITQGAELVGSPDACAPLEAPDSLR 2696
Query: 693 LQLNINGTYRAHWADRLGFCKGFGA-PLAFRCIKSNGGPVPRTLVGVTRIYPVLYKERLS 751
L+++ N T A W RLGF + PL + S+GG V + V R+YP+ + E+
Sbjct: 2697 LKISANSTRPARWHSRLGFFRDPRPFPLPLSSLFSDGGNVGCVDIIVQRVYPLQWVEKTV 2756
Query: 752 DGRSIVRSERMECKVMQLYQHRQSMVVEGIV----SEFQRGNKDS--------------- 792
G I RSER E K + Q +E + +EF+ +D+
Sbjct: 2757 SGLYIFRSEREEEKEALRFAEAQQKKLEALFTKVHTEFKDHEEDTTQRCVLSRTLTRQQV 2816
Query: 793 HILNDSNSEGAKLFKMLETVAEPEVIMAEMSPEQLTSFATYQAKLEATRQSNMERSIEKA 852
H L D GA+L+ ++ ++P+ + A S EQL + Y+ L +Q+ ++ KA
Sbjct: 2817 HALQD----GAELYAAVQYASDPDHLEACFSEEQLRALNNYRQMLNDKKQARIQSEFRKA 2872
Query: 853 LENAGLRE---RDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAY 909
LE+A E RDVT ++RV K + +++IW P+ L EG+ Y
Sbjct: 2873 LESAEKEEGLSRDVTTVWKLRVTSY-------KKKEKSALLSIWRPSSDLSSLLTEGKRY 2925
Query: 910 AILGLIPMNSDSN----TLYLQARGSTTKWQPLSPLATEHFKPFFSPRRSVLISNLGE 963
I L S S ++ L A T++Q L P+++E + PR S+ S L +
Sbjct: 2926 RIYHLAVSKSKSKFERPSIQLTA-TKRTQYQQL-PVSSETLLQVYQPRESLHFSRLSD 2981
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 30/104 (28%)
Query: 70 MFKTGSGKAVPLKQSSIEKALSVLG-TDNDCG-----ISFAGEEHP-----RENGFGFSN 118
+F T SGKA+ + +S+EKA V D D +S G E P REN S
Sbjct: 1930 IFSTASGKAIQVSDASLEKARQVFSEMDGDAKQLSSMVSLEGNEKPHHSVKRENSVVHST 1989
Query: 119 -------------------SLFQTGSGKTVNISSAGLVRAKSLL 143
S F T GK V +S + L + K +L
Sbjct: 1990 QGVLSLPKPLPGNVNSSVFSGFSTAGGKLVTVSESALHKVKGML 2033
>sp|P51587|BRCA2_HUMAN Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2
PE=1 SV=2
Length = 3418
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 242/495 (48%), Gaps = 38/495 (7%)
Query: 514 GAEALFNMLAQS-GASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEE 572
G E + L + G + S++WV NHY+WI+WKLA E + + A + L+ VL +
Sbjct: 2596 GKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPKEFANRCLSPERVLLQ 2655
Query: 573 LKYRYEREVNNGHRSAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSY 632
LKYRY+ E++ RSAIK+I+E D + +VLC+S I ET + A+
Sbjct: 2656 LKYRYDTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANISETSSNKTSSADTQK 2715
Query: 633 AAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVGQKLRIWGAILCGWVGPVSPLEASGSIS 692
A +ELTDGWY+V A LD L L G+L VGQK+ + GA L G +PLEA S+
Sbjct: 2716 VAIIELTDGWYAVKAQLDPPLLAVLKNGRLTVGQKIILHGAELVGSPDACTPLEAPESLM 2775
Query: 693 LQLNINGTYRAHWADRLGFC---KGFGAPLAFRCIKSNGGPVPRTLVGVTRIYPVLYKER 749
L+++ N T A W +LGF + F PL + S+GG V V + R YP+ + E+
Sbjct: 2776 LKISANSTRPARWYTKLGFFPDPRPF--PLPLSSLFSDGGNVGCVDVIIQRAYPIQWMEK 2833
Query: 750 LSDGRSIVRSERMECKVMQLYQHRQSMVVEGIVSEFQRGNKD-----------SHILNDS 798
S G I R+ER E K Y Q +E + ++ Q ++ S L
Sbjct: 2834 TSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENTTKPYLPSRALTRQ 2893
Query: 799 N----SEGAKLFKMLETVAEPEVIMAEMSPEQLTSFATYQAKLEATRQSNMERSIEKALE 854
+GA+L++ ++ A+P + S EQL + ++ L +Q+ ++ I KA+E
Sbjct: 2894 QVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKKQAQIQLEIRKAME 2953
Query: 855 NAGLRE----RDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAYA 910
+A +E RDVT ++R+V + K I++IW P+ L EG+ Y
Sbjct: 2954 SAEQKEQGLSRDVTTVWKLRIVSYSKKEKDS------VILSIWRPSSDLYSLLTEGKRYR 3007
Query: 911 ILGLIPMNSDSNTLYLQARGSTTK---WQPLSPLATEHFKPFFSPRRSVLISNLGE---V 964
I L S S + + + TK +Q L P++ E + PR + S +
Sbjct: 3008 IYHLATSKSKSKSERANIQLAATKKTQYQQL-PVSDEILFQIYQPREPLHFSKFLDPDFQ 3066
Query: 965 PLSSEFDIAAFVVHV 979
P SE D+ FVV V
Sbjct: 3067 PSCSEVDLIGFVVSV 3081
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 114 FGFSNSLFQTGSGKTVNISSAGLVRAKSLLGLEEGRNDWSFEGLQHTRMTSTPRFEVKEG 173
F S++ FQT SGK ++++ + + D E L + + S ++++
Sbjct: 1421 FETSDTFFQTASGKNISVAKESFNKIVNFF-------DQKPEELHNFSLNSELHSDIRKN 1473
Query: 174 VKGNVFESDTSVLRPSSISKAGFAESRFKNKISSNMMQTEGLNSAPKPPQIKFQTAGGRS 233
+ +T +++ + ++ + N++ + Q E +P + F TA G+
Sbjct: 1474 KMDILSYEETDIVKHKILKESVPVGT--GNQLVTFQGQPERDEKIKEPTLLGFHTASGKK 1531
Query: 234 LSVSSDALQYARNLLGDPELGTFFHEVDVDQLDLTSFKHR 273
+ ++ ++L +NL + E GT ++TSF H+
Sbjct: 1532 VKIAKESLDKVKNLFDEKEQGTS---------EITSFSHQ 1562
>sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca2 PE=1 SV=1
Length = 3343
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/477 (31%), Positives = 229/477 (48%), Gaps = 39/477 (8%)
Query: 514 GAEALFNMLAQS-GASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEE 572
G E + L + G + S +WVSNHY+WIVWKLA E + + A + L VL +
Sbjct: 2526 GKEEFYRALCDTPGVDPKLISSVWVSNHYRWIVWKLAAMEFAFPKEFANRCLNPERVLLQ 2585
Query: 573 LKYRYEREVNNGHRSAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSY 632
LKYRY+ E++N RSA+K+ILE D + +VLC+S I ET + +++
Sbjct: 2586 LKYRYDVEIDNSSRSALKKILERDDTAAKTLVLCVSDIISLSTNVSETSGSKASSEDSNK 2645
Query: 633 AAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVGQKLRIWGAILCGWVGPVSPLEASGSIS 692
+ELTDGWY+V A LD L + +G+L VGQK+ GA L G +PLEA S+
Sbjct: 2646 VDTIELTDGWYAVKAQLDPPLLALVKSGRLTVGQKIITQGAELVGSPDACAPLEAPDSLR 2705
Query: 693 LQLNINGTYRAHWADRLGFCKGFGA-PLAFRCIKSNGGPVPRTLVGVTRIYPVLYKERLS 751
L+++ N T A W +LGF PL + S+GG V V V R+YP+ + E+
Sbjct: 2706 LKISANSTRPARWHSKLGFFHDPRPFPLPLSSLFSDGGNVGCVDVIVQRVYPLQWVEKTV 2765
Query: 752 DGRSIVRSERMECKVMQLYQHRQSMVVEGIV----SEFQRGNKD---------------S 792
G I R+ER E K + Q +E + +E + +D
Sbjct: 2766 SGSYIFRNEREEEKEALRFAEAQQKKLEALFTKVHTELKEHEEDIAQRRVLSRALTRQQV 2825
Query: 793 HILNDSNSEGAKLFKMLETVAEPEVIMAEMSPEQLTSFATYQAKLEATRQSNMERSIEKA 852
H L D GA+L+ ++ ++PE + S EQL + Y+ L +Q+ ++ KA
Sbjct: 2826 HALQD----GAELYAAVQDASDPEHLETCFSEEQLRALNNYRQMLSDKKQARIQSEFRKA 2881
Query: 853 LENAGLRE---RDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAY 909
LE A E RDV+ ++RV K + +++IW P+ L EGQ Y
Sbjct: 2882 LEAAEKEEGLSRDVSTVWKLRVTSY-------KKREKSALLSIWRPSSDLPSLLTEGQRY 2934
Query: 910 AILGLIPMNSDSNTLYLQARGSTTK---WQPLSPLATEHFKPFFSPRRSVLISNLGE 963
I L S + + + + TK +Q L P+++E + PR + S L +
Sbjct: 2935 RIYHLSVSKSKNKFEWPSIQLTATKRTQYQQL-PVSSETLLQLYQPRELLPFSKLSD 2990
>sp|Q864S8|BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog OS=Felis catus
GN=BRCA2 PE=2 SV=2
Length = 3372
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/497 (30%), Positives = 239/497 (48%), Gaps = 42/497 (8%)
Query: 514 GAEALFNMLAQS-GASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEE 572
G E + L + G S++WV NHY+WI+WKLA E + + A + L+ VL +
Sbjct: 2540 GKEEFYRALCDTPGVDPNLISRIWVYNHYRWIIWKLAAMEFAFPKEFANRCLSPERVLLQ 2599
Query: 573 LKYRYEREVNNGHRSAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSY 632
LKYRY+ E++ RSAIK+I+E D + +VLCIS + ET +G
Sbjct: 2600 LKYRYDMEIDRSKRSAIKKIMERDDTAAKTLVLCISETISSSTDLSETSGSKTSGVGTKN 2659
Query: 633 AAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVGQKLRIWGAILCGWVGPVSPLEASGSIS 692
+ELTDGWY++ A LD L + G+L VG K+ I GA L G +PLEA S+
Sbjct: 2660 VGIVELTDGWYAIKAQLDPPLLALVKKGRLTVGHKIIIHGAELAGSPDACTPLEAPESLI 2719
Query: 693 LQLNINGTYRAHWADRLGFC---KGFGAPLAFRCIKSNGGPVPRTLVGVTRIYPVLYKER 749
L+++ N T A W +LGF + F PL + S+GG V V + R YP+ + E+
Sbjct: 2720 LKISANSTRPACWYAKLGFFPDPRPF--PLPLSSLFSDGGNVGCVDVVIQRTYPIQWMEK 2777
Query: 750 LSDGRSIVRSERME----CKVMQLYQHRQSMVVEGIVSEFQRGNKDSHILND-------- 797
G I R+ER E K + Q + ++ I +EF++ D +I
Sbjct: 2778 TPSGLCIFRNEREEEREATKYAEAQQKKLEVLFNKIQAEFEK--HDENITKRCVPLRALT 2835
Query: 798 -----SNSEGAKLFKMLETVAEPEVIMAEMSPEQLTSFATYQAKLEATRQSNMERSIEKA 852
+ +GA+L++ ++ +P + A S EQ+ + ++ L +Q+ ++ KA
Sbjct: 2836 RQQVCALQDGAELYEAVKNAPDPASLEAYFSEEQIRALNNHRQMLNDKKQAQIQLEFRKA 2895
Query: 853 LENAGLRE----RDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQA 908
+E+A E RDVT ++R++ GK ++IW P+ L EG+
Sbjct: 2896 MESAEQGEQMLPRDVTTVWKMRIISY------GKKEKDSVTLSIWRPSSDLYSLLTEGKR 2949
Query: 909 YAILGLIPMNSDSNT--LYLQARGS-TTKWQPLSPLATEHFKPFFSPRRSVLISNLGE-- 963
Y I L S S + ++Q + T++Q L P + E + PR + + L +
Sbjct: 2950 YRIYHLATSQSKSKSERAHIQLTATKKTQYQQL-PASDELLFQVYQPREPLYFNKLLDPD 3008
Query: 964 -VPLSSEFDIAAFVVHV 979
P SE D+ FVV V
Sbjct: 3009 FQPPCSEVDLIGFVVSV 3025
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 40/202 (19%)
Query: 89 ALSVLGTDNDCGISFAGEEHPRENGFG-------FSNSLFQTGSGKTVNISSAGLVRAKS 141
L V+ + ++ + +EH N G + FQT SGK + +S A L + +
Sbjct: 1385 CLEVVKAEETLHVNTSNKEHLTANTMGRITKDFDIFDVSFQTASGKNIRVSRASLNKVTN 1444
Query: 142 LLG---LEEGRNDWS-------FEGLQHTRMTSTPRFEVKEGVKGNVFESDTSVLRPSSI 191
LL EE N+++ G+ + + E++ K + ESD + S+
Sbjct: 1445 LLDQKCTEEELNNFADSLNSELLSGIDINKADISHHGEMEILKKRQMKESDLTGTENKSL 1504
Query: 192 SKAGFAESRFKNKISSNMMQTEGLNSAPKPPQIKFQTAGGRSLSVSSDALQYARNLLGDP 251
+ E K KI +P + F TA G+ + ++ ++L +NL
Sbjct: 1505 TLQQRPEYEIK-KIK-------------EPTILGFHTASGKRIEIAKESLDKVKNL---- 1546
Query: 252 ELGTFFHEVDVDQLDLTSFKHR 273
F E + D+ ++T+F HR
Sbjct: 1547 -----FDEQEQDKSEMTNFSHR 1563
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 70 MFKTGSGKAVPLKQSSIEKALSVLGTDNDCG------ISFAGEE--------------HP 109
+F T SGK V + ++++KA V D +SF E H
Sbjct: 1931 IFSTASGKCVQVSDAALQKARQVFSKVEDSAKQPFSKVSFKHNEDHSDKFTREENTMIHT 1990
Query: 110 RENGFGFSNSLFQTGSGKTVNISSAGLVRAKSLL 143
+N + S F T SGK V +S + L + K +L
Sbjct: 1991 PQNLLSSAFSGFSTASGKQVPVSESALCKVKGIL 2024
>sp|Q750Y8|TPIS_ASHGO Triosephosphate isomerase OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TPI1 PE=3 SV=2
Length = 248
Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 583 NGHRSAIKRILE----GDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSYAAKLEL 638
NG + +IK I+E D + +V+C A +++ + +HP+ GA+N+Y
Sbjct: 14 NGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAVSLVSHPQVTVGAQNAYTKASGA 73
Query: 639 TDGWYSVDAFLDV 651
G SVD DV
Sbjct: 74 YTGENSVDQIKDV 86
>sp|P74598|Y1491_SYNY3 Uncharacterized WD repeat-containing protein sll1491
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1491 PE=4 SV=1
Length = 348
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 865 PFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTL 924
P + + + ++ N +++EG I I++ A +Q + G +L L + D NTL
Sbjct: 271 PSLEINTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLRGHQGWVLSL-AFSPDGNTL 329
Query: 925 YLQARGSTTKWQPLSPLA 942
Y A T K LS LA
Sbjct: 330 YSGAEDKTVKIWDLSALA 347
>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus
GN=Apmap PE=2 SV=2
Length = 376
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 30 SPIQPHSSSFRLPSMSDLLLEGHSKLRE---------NGNEGADNVSTPMFK-TGSGKAV 79
SPI P S SF+ P +L+ ++KLR+ NG E N+ +F T G+ V
Sbjct: 23 SPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNGPESIVNIGDVLFTGTADGRVV 82
Query: 80 PLKQSSIE 87
L+ IE
Sbjct: 83 KLENGEIE 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,754,917
Number of Sequences: 539616
Number of extensions: 17845453
Number of successful extensions: 40705
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 40612
Number of HSP's gapped (non-prelim): 79
length of query: 1112
length of database: 191,569,459
effective HSP length: 128
effective length of query: 984
effective length of database: 122,498,611
effective search space: 120538633224
effective search space used: 120538633224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)