Query 001266
Match_columns 1112
No_of_seqs 213 out of 235
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1miu_A BRCA2, breast cancer ty 100.0 5E-134 2E-138 1194.7 44.6 607 466-1108 63-726 (738)
2 1n0w_B Breast cancer type 2 su 97.8 2.6E-06 8.9E-11 64.8 0.2 29 119-147 6-34 (35)
3 1n0w_B Breast cancer type 2 su 97.6 2.1E-05 7.1E-10 59.9 1.6 30 223-252 5-34 (35)
4 1jmc_A Protein (replication pr 97.5 0.0029 9.8E-08 67.2 17.2 172 886-1089 55-239 (246)
5 4gop_C Putative uncharacterize 97.2 0.01 3.4E-07 68.7 18.4 176 886-1089 50-238 (444)
6 2b29_A Replication protein A 7 92.8 0.24 8.3E-06 48.2 7.6 74 587-673 11-85 (123)
7 2k50_A Replication factor A re 91.9 1.4 5E-05 41.3 11.7 98 961-1077 10-113 (115)
8 1xjv_A Protection of telomeres 85.9 4.9 0.00017 44.0 12.0 109 967-1093 15-139 (294)
9 2k50_A Replication factor A re 85.7 2.8 9.5E-05 39.4 8.7 64 865-939 43-106 (115)
10 1xjv_A Protection of telomeres 85.3 10 0.00035 41.5 14.2 162 866-1049 39-244 (294)
11 1qzg_A Protection of telomeres 60.8 51 0.0017 34.4 10.8 78 964-1052 39-120 (187)
12 1jb7_A Telomere-binding protei 55.0 1.4E+02 0.0048 35.3 14.6 81 966-1051 48-132 (495)
13 2i46_A Adrenocortical dysplasi 54.7 30 0.001 34.5 7.3 70 585-657 6-76 (161)
14 4hik_A Protection of telomeres 54.5 15 0.00052 36.6 5.5 60 866-925 32-105 (143)
15 1o7i_A SSB, SSO2364, single st 52.9 1.3E+02 0.0045 28.3 11.6 82 968-1071 13-98 (119)
16 2k75_A Uncharacterized protein 49.4 39 0.0013 31.6 7.1 47 885-939 48-94 (106)
17 2k75_A Uncharacterized protein 46.9 71 0.0024 29.8 8.5 76 968-1068 14-92 (106)
18 3dm3_A Replication factor A; p 46.9 54 0.0019 30.7 7.7 66 966-1050 13-83 (105)
19 1o7i_A SSB, SSO2364, single st 44.5 45 0.0015 31.5 6.8 61 864-939 37-97 (119)
20 1jb7_A Telomere-binding protei 43.8 97 0.0033 36.6 10.9 130 866-1000 73-250 (495)
21 3dm3_A Replication factor A; p 40.5 50 0.0017 30.9 6.4 41 886-929 52-92 (105)
22 2kbn_A Conserved protein; nucl 39.3 1.1E+02 0.0038 28.6 8.6 71 965-1055 13-83 (109)
23 2kbn_A Conserved protein; nucl 33.0 62 0.0021 30.3 5.7 42 885-929 45-86 (109)
24 1wjj_A Hypothetical protein F2 28.9 81 0.0028 31.5 6.0 49 885-938 72-120 (145)
25 3e0e_A Replication protein A; 26.8 97 0.0033 28.3 5.8 39 886-928 49-87 (97)
26 4hik_A Protection of telomeres 25.5 3.4E+02 0.012 27.0 9.8 78 961-1047 8-97 (143)
27 1ynx_A Replication factor-A pr 23.7 2.1E+02 0.0072 26.7 7.6 100 956-1072 5-112 (114)
No 1
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=100.00 E-value=4.5e-134 Score=1194.75 Aligned_cols=607 Identities=30% Similarity=0.468 Sum_probs=522.1
Q ss_pred cccchhhccC-CCCCccccc----cccccchhcccccCccceeeecC------------------------CCCcccCHH
Q 001266 466 PRMCVKEYFG-MPPSAQGML----DHLQDQVRQMKSHNADKYMFHDA------------------------SGLNCIGAE 516 (1112)
Q Consensus 466 ~R~~i~~~f~-~~~~~~~~~----~~v~~~v~~i~~~nA~~y~F~~~------------------------~~~~~~G~e 516 (1112)
+|.+|+++.+ -.|...+.+ .+|+++|++|+++||+.|.|+.. +.++++|.+
T Consensus 63 ~r~~l~~~v~~~~p~~~~~~~L~~~gV~~~~~~i~s~na~~f~F~~~d~~~~e~~~~~~gi~l~dg~~l~~~~~g~~g~~ 142 (738)
T 1miu_A 63 PRISLQAAVGDRAPSACSPKQLYIYGVSKECINVNSKNAEYFQFDIQDHFGKEDLCAGKGFQLADGGWLIPSNDGKAGKE 142 (738)
T ss_dssp CCEETTGGGTSCSCCCCTTCSCSSSCCCSSSSSCCTTTTTTCCCCTHHHHTTTSTTCTTCEECTTSCEECCCTTSCCCHH
T ss_pred cchhHHHHhCCCCCcccCHHHHHhcCCChHHeEecccccceeEEecccccchhhhcccCceecCCCceeecccCCcccHH
Confidence 6788888874 445444444 48999999999999999999752 246788999
Q ss_pred HHHHHHHh-CCCCccccCHhHHHHHHHHHHHHHhhhhhcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCchhhhhHhC
Q 001266 517 ALFNMLAQ-SGASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEELKYRYEREVNNGHRSAIKRILEG 595 (1112)
Q Consensus 517 ef~~~L~~-~G~~~~l~~~~WV~NHyrwIVWKLA~~er~~P~~~~~~~lTp~~VL~QLkyRYerEi~~~~RSaLRrIlE~ 595 (1112)
|||++|++ +|++|+|++++||.|||||||||||+|+++||..++++||||++||+||+|||++||++++||+||||+|+
T Consensus 143 E~~~~ll~~~Gv~p~l~~~~Wv~NhyrwIvWKLAsme~~~P~~~~~~~ltp~~VL~qL~yRY~rEi~~~~RsaLrrI~E~ 222 (738)
T 1miu_A 143 EFYRALCDTPGVDPKLISSIWVANHYRWIVWKLAAMEFAFPKEFANRCLNPERVLLQLKYRYDVEIDNSRRSALKKILER 222 (738)
T ss_dssp HHHHHHHHSTTCCTTSCCHHHHHHHHHHHHHHHHHTSTTCTTTCSSSSSSHHHHHHHHHHHHHHHTTSCCCCHHHHHHTT
T ss_pred HHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCChhhcccCCCHHHHHHHHHHHHHhhhcccCCcHHHHHHhc
Confidence 99999996 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEeeeecCCCCcCCCccccCCCCCCcccEEEEeeceeEEeccccHHHHHHHHcCCcccCceEEEEccee
Q 001266 596 DALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSYAAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVGQKLRIWGAIL 675 (1112)
Q Consensus 596 D~~~s~~MVLcVs~I~~~~~~~~e~~~~~~~g~~~~~~~~LELTDGWY~IkA~lD~~L~~~l~~GkI~vG~KL~I~GA~L 675 (1112)
|++|++||||||++|.+.+....++.+...+|++..+..+||||||||+|+|+||++|+++|++|||+||+||+|+||+|
T Consensus 223 D~~as~~mVLcVs~I~~~~~~~~e~~~~~~~~~~~~~~~~leLTDGWY~IkA~lD~~L~~~l~~GkI~vGqKL~I~GA~L 302 (738)
T 1miu_A 223 DDTAAKTLVLCISDIISPSTKVSETSGGKTSGEDANKVDTIELTDGWYAVRAQLDPPLMALVKSGKLTVGQKIITQGAEL 302 (738)
T ss_dssp SSCCBCSEECEECCC----------------------CCCCCEECSSCEECCCCCHHHHHHHHTTCSCSSCBCCCSSBCE
T ss_pred CCCcCCcEEEEEEEeecCCCccccccccccccccccccceEEEecCcEEEEEEeCHHHHHHHHcCCccCCceEEEECcee
Confidence 99999999999999986543222333333444445567899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCccEEEEEeeceeeccccCccccccCC-CCcccceeeccCCCeEeeEEEEEEEEccceEEEEccCCc
Q 001266 676 CGWVGPVSPLEASGSISLQLNINGTYRAHWADRLGFCKGF-GAPLAFRCIKSNGGPVPRTLVGVTRIYPVLYKERLSDGR 754 (1112)
Q Consensus 676 ~~~~~~~sPLEa~~~~~L~L~~NstrrA~W~akLGf~~~~-~~p~~L~sl~~~GG~V~~idVvV~RvyP~~y~Ek~~~G~ 754 (1112)
+++.+||+|||++++++|+|++||||||+|++||||++++ +|+++|+||.++||+||||+|+|+|+||++|+|++.+|.
T Consensus 303 ~g~~~~~~PLEa~~s~~L~L~~NsTRrA~W~~kLGf~~~~~pf~~~Lssl~~~GG~V~~i~vvV~RvyP~~y~ek~~~g~ 382 (738)
T 1miu_A 303 VGSPDACAPLEAPDSLRLKISANSTRPARWHSRLGFFRDPRPFPLPLSSLFSDGGNVGCVDIIVQRVYPLQWVEKTVSGL 382 (738)
T ss_dssp ESCCSCCCTTSCCSSCEECCCGGGCCCBCSSCCSEECSCCSCCCCCGGGCCSSSCCEEEEEEEEEEECCCBCCEECSSSC
T ss_pred ccCCCCCCCccCCCceEEEEeeccEeccccccccCcccCCCCccccHHHcccCCCEEEEEEEEEEEEcCceEEEEcCCCc
Confidence 9999999999999999999999999999999999999986 468999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHH----HHHHHHHHhhHHHHhhcCCcc-------ccccc----CchhHHHHHHHHhccCChHHHH
Q 001266 755 SIVRSERMECKVMQLYQ----HRQSMVVEGIVSEFQRGNKDS-------HILND----SNSEGAKLFKMLETVAEPEVIM 819 (1112)
Q Consensus 755 ~i~Rner~E~k~~~~~~----~r~e~l~e~i~~E~ere~~~~-------~~~~~----~~s~Ga~l~~~le~~~dp~~l~ 819 (1112)
+|+||||+|++++++|. +++++++++|+.|||++++.. +..+. ..+||++||++++.+.||++++
T Consensus 383 ~I~R~er~E~~~~~~~~~~~~~~~e~l~~kiq~Efe~~~e~~~~~~~~~~~lt~~~v~~l~dg~elye~~~~a~Dp~~~e 462 (738)
T 1miu_A 383 YIFRSEREEEKEALRFAEAQQKKLEALFTKVHTEFKDHEEDTTQRCVLSRTLTRQQVHALQDGAELYAAVQYASDPDHLE 462 (738)
T ss_dssp EECCCTTHHHHHHHHHHHHTTTHHHHHHHHHHTTCC------------CCCTTHHHHHTTSSHHHHHHHHHSCSSSTTTT
T ss_pred eEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhhhcccHHHHHHHHhccCChHHHH
Confidence 99999999999999997 457889999999999876421 22222 2259999999999999999999
Q ss_pred hcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCCCceeeEEEEEeeccccccCCCCCCceEEEEEeCC
Q 001266 820 AEMSPEQLTSFATYQAKLEATRQSNMERSIEKALEN----AGLRERDVTPFMRVRVVGLTGKNYQGKGSSREGIITIWNP 895 (1112)
Q Consensus 820 ~~ls~~Ql~~l~~~r~~~~~~~Q~~~~~~i~~aL~~----~g~~~R~Vtp~~klRV~d~~~k~~~~k~~~~~aiLTIWrP 895 (1112)
++||++|+++|++||+++++++|++++.+++++|+. .+++ |+|||||||||+|++. + .++++||||||
T Consensus 463 ~~ls~eQ~~~l~~~~~~l~e~~q~~iq~e~~k~~e~~~~~~~~~-R~Vtp~~klRV~d~~~-----~--~k~~iLSIW~P 534 (738)
T 1miu_A 463 ACFSEEQLRALNNYRQMLNDKKQARIQSEFRKALESAEKEEGLS-RDVTTVWKLRVTSYKK-----K--EKSALLSIWRP 534 (738)
T ss_dssp TSCCSSTTSSSTTTSHHHHHHHHHHHHHHHHHTHHHHTTTTTCC-CCBCCEEEEEEEESSS-----S--CCCEEEEEESC
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CccceeEEEEEEeccC-----C--CceEEEEEeCC
Confidence 999999999999999999999999999999998874 3565 9999999999999762 2 36999999999
Q ss_pred ChhhhcccccccEEEEEeeecCCCCC----CceeEeeeecceeeeeCCccccccCCCCcCCcceecccccCC---CCCCC
Q 001266 896 AEKQQCELVEGQAYAILGLIPMNSDS----NTLYLQARGSTTKWQPLSPLATEHFKPFFSPRRSVLISNLGE---VPLSS 968 (1112)
Q Consensus 896 sedl~~~L~EG~ry~V~~L~ps~~~s----~~l~L~~r~~~Trw~~L~~~~~~~~~~~y~PR~~v~~s~l~~---~P~~~ 968 (1112)
++++.+.|+||++|+||||+|+.+++ ++++|+++ ++|+|++|+..+ +.+.+.|+||++++|++|++ +|+|+
T Consensus 535 ~edl~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAt-k~T~~~~L~~~~-~~~~~~~~pR~~~~~~~l~~~~f~p~~~ 612 (738)
T 1miu_A 535 SSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTAT-KRTQYQQLPVSS-ETLLQVYQPRESLHFSRLSDPAFQPPCS 612 (738)
T ss_dssp CHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEE-EEEEEEEECCCH-HHHTTTCCCCCBCCSGGGGSSSCCTTTT
T ss_pred ChHHHhhccCCcEEEEEEeeccCCCccCccceEEEeec-ccceeEECCcch-hhhccccCCcceeeHHHhcCccccCCCC
Confidence 99999999999999999999999875 57999997 589999999654 44667999999999999886 99999
Q ss_pred ccceEEEEEEeCCcccccccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEEeeceEEec
Q 001266 969 EFDIAAFVVHVGDVYEDSQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCNLIKRP 1048 (1112)
Q Consensus 969 EfD~vG~Vv~Vg~~~~~~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~NL~~r~ 1048 (1112)
|||+|||||+|+..+ +++|||||+|+++ +||+|.||+++.+ | +++|.+||++||+||.
T Consensus 613 EvDivG~Vv~v~~~~----~~~~~vylsD~~~----------nll~Ikf~~~l~e-------D-~~~~~~va~sNL~~r~ 670 (738)
T 1miu_A 613 EVDVVGVVVSVVKPI----GLAPLVYLSDECL----------NLLVVKFGIDLNE-------D-IKPRVLIAASNLQCQP 670 (738)
T ss_dssp EEEEEEEEEEEECCT----TSCCEEEEECSSS----------CEEEEEESSCCCS-------C-CCSSCEEEEEEEECCS
T ss_pred ceeEEEEEEEEcccC----cccceEEEEcCCC----------cEEEEEEecCchh-------h-CccccEEEEeeeEeec
Confidence 999999999998854 5889999999996 6999999999884 2 6789999999999998
Q ss_pred cCCCCCeeEEEeccceeeEecCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHhHhhhhc
Q 001266 1049 KDHLNHIWVAEATENSSYFLSFDFPTCSHLRSAAASAQSWAKISSLIIDKLKENVLFIIG 1108 (1112)
Q Consensus 1049 ~D~~n~i~va~AtE~s~~sl~~~~~~~~~l~~a~~~l~~wa~~s~~~i~~lk~~v~~~~g 1108 (1112)
.+ ...|+++.|||+|+|+-+|.. .|+.+++..|+.--+.----...-.+++..+.+
T Consensus 671 ~~-~~~ip~~~a~~~t~fs~~pk~---~hl~~~~~~lk~~~~~~~~f~~~~~~~~~~~l~ 726 (738)
T 1miu_A 671 ES-TSGVPTLFAGHFSIFSASPKE---AYFQEKVNNLKHAIENIDTFYKEAEKKLIHVLE 726 (738)
T ss_dssp CC-SSSCCCEEECTTCEEESSCCC---TTTHHHHHHHTHHHHTTCSHHHHHHHHHHHHHC
T ss_pred cc-cccCceEEeccceEEecCccH---hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 86 579999999999999999777 999999999888765544444555566666554
No 2
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=97.83 E-value=2.6e-06 Score=64.78 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=26.7
Q ss_pred CccccCCCceEEechhHHHHHHHHhcccc
Q 001266 119 SLFQTGSGKTVNISSAGLVRAKSLLGLEE 147 (1112)
Q Consensus 119 ~iFsTaSGKsV~VS~asLqkAkqvf~~~e 147 (1112)
--|+|||||+|.|++.||.|+|.+|.+.+
T Consensus 6 lgFhTASGKkv~IakesL~Kvk~lF~E~~ 34 (35)
T 1n0w_B 6 LGFHTASGKKVKIAKESLDKVKNLFDEKE 34 (35)
T ss_dssp GSCEETTSCBCCCCHHHHHHTTTTTCCCC
T ss_pred eeeeecCCcEEEehHHHHHHHHHHhhhcc
Confidence 45999999999999999999999999764
No 3
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=97.56 E-value=2.1e-05 Score=59.95 Aligned_cols=30 Identities=27% Similarity=0.603 Sum_probs=27.5
Q ss_pred CcceecCCCceEEeCHHHHHHHHHhcCCCC
Q 001266 223 QIKFQTAGGRSLSVSSDALQYARNLLGDPE 252 (1112)
Q Consensus 223 ~~gFsTAsGK~VsVSe~aL~rAk~lL~e~d 252 (1112)
-.||+|||||+|.|+..+|-+||.++.|.+
T Consensus 5 ~lgFhTASGKkv~IakesL~Kvk~lF~E~~ 34 (35)
T 1n0w_B 5 LLGFHTASGKKVKIAKESLDKVKNLFDEKE 34 (35)
T ss_dssp GGSCEETTSCBCCCCHHHHHHTTTTTCCCC
T ss_pred eeeeeecCCcEEEehHHHHHHHHHHhhhcc
Confidence 469999999999999999999999998864
No 4
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=97.47 E-value=0.0029 Score=67.18 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=113.1
Q ss_pred ceEEEEEeCCChhh-hcccccccEEEEEee--ecCCCC----CCceeEeeeecceeeeeCCccccccCCCCcCCcceecc
Q 001266 886 REGIITIWNPAEKQ-QCELVEGQAYAILGL--IPMNSD----SNTLYLQARGSTTKWQPLSPLATEHFKPFFSPRRSVLI 958 (1112)
Q Consensus 886 ~~aiLTIWrPsedl-~~~L~EG~ry~V~~L--~ps~~~----s~~l~L~~r~~~Trw~~L~~~~~~~~~~~y~PR~~v~~ 958 (1112)
..+..++|+..-+. ...|+||+.|.|.+. .|...+ .....|+.. ..|.-++++... .+ |.+ .-..+.+
T Consensus 55 G~I~at~~~~~~~~~~~~l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~-~~T~I~~~~~~~--~i-P~~-~~~f~~i 129 (246)
T 1jmc_A 55 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN-NETSVMPCEDDH--HL-PTV-QFDFTGI 129 (246)
T ss_dssp CEEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCCCCCSEEEECC-TTCEEEECCSCS--CC-CCC-CCCBCCG
T ss_pred CeEEEEEChHHHHHhhhhcccCCEEEECCCEEEEcccCcccCCCCEEEEEc-CCcEEEEccCcc--cC-Ccc-eeeeEEH
Confidence 37889999865433 467999999999984 343311 245556554 356666665321 11 111 1123455
Q ss_pred cccCCCCCCCccceEEEEEEeCCcccc------cccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccc
Q 001266 959 SNLGEVPLSSEFDIAAFVVHVGDVYED------SQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINY 1032 (1112)
Q Consensus 959 s~l~~~P~~~EfD~vG~Vv~Vg~~~~~------~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~ 1032 (1112)
++|.......-+|++|+|+.|++.... .......+.|.|.+. .-+-+.+|+...+. | +
T Consensus 130 ~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg----------~~i~~tLWg~~a~~--~---~- 193 (246)
T 1jmc_A 130 DDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSG----------KVVTATLWGEDADK--F---D- 193 (246)
T ss_dssp GGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTC----------CEEEEEEEHHHHHH--C---C-
T ss_pred HHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCC----------CEEEEEEEchhhhh--c---c-
Confidence 555554556679999999999996431 123456789999982 46888899764432 2 1
Q ss_pred cccCceEEeeceEEeccCCCCCeeEEEeccceeeEecCCCCCChhHHHHHHHHHHHH
Q 001266 1033 NLVGSTVGFCNLIKRPKDHLNHIWVAEATENSSYFLSFDFPTCSHLRSAAASAQSWA 1089 (1112)
Q Consensus 1033 ~~~G~vV~f~NL~~r~~D~~n~i~va~AtE~s~~sl~~~~~~~~~l~~a~~~l~~wa 1089 (1112)
...|.+|+|.+.....+. . ..+-++..|++.++|+.| -+..|+.|-
T Consensus 194 ~~~~~vv~i~~~~v~~f~-g---~~ls~~~~s~i~inpd~p-------e~~~l~~w~ 239 (246)
T 1jmc_A 194 GSRQPVLAIKGARVSDFG-G---RSLSVLSSSTIIANPDIP-------EAYKLRGWF 239 (246)
T ss_dssp CTTCCEEEEEEEEEECTT-S---SEEECCSSCEEESSCCSH-------HHHHHHHHH
T ss_pred cCCCCEEEEEEEEEEecC-C---eEEEecCcceEEECCCCH-------HHHHHHHHH
Confidence 356899999999998873 2 355668999999999873 256788884
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.16 E-value=0.01 Score=68.71 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=113.8
Q ss_pred ceEEEEEeCCChh-hhcccccccEEEEEeee--cCCCC----CCceeEeeeecceeeeeCCccccccCCCCcCCcceecc
Q 001266 886 REGIITIWNPAEK-QQCELVEGQAYAILGLI--PMNSD----SNTLYLQARGSTTKWQPLSPLATEHFKPFFSPRRSVLI 958 (1112)
Q Consensus 886 ~~aiLTIWrPsed-l~~~L~EG~ry~V~~L~--ps~~~----s~~l~L~~r~~~Trw~~L~~~~~~~~~~~y~PR~~v~~ 958 (1112)
..+..|+|+..-+ ....|+||+.|.|.+.. +...+ .....|+... .|...++.... .+ |.+ .-..+.|
T Consensus 50 G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~-~T~V~~~~d~~--~i-P~~-~~~f~~i 124 (444)
T 4gop_C 50 GEIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFEN-STEIEECTDAT--DV-PEV-KYEFVRI 124 (444)
T ss_dssp CEEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCSCCCSEEEEECT-TCEEEECSCCS--SS-CCC-CCCBCCG
T ss_pred CEEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCccccCCCCEEEEEcC-CcEEEEccCcc--cC-cce-eecccCH
Confidence 4788999997543 34679999999999853 33321 2345565543 57777775321 11 111 1123445
Q ss_pred cccCCCCCCCccceEEEEEEeCCcccc-----c-ccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccc
Q 001266 959 SNLGEVPLSSEFDIAAFVVHVGDVYED-----S-QQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINY 1032 (1112)
Q Consensus 959 s~l~~~P~~~EfD~vG~Vv~Vg~~~~~-----~-~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~ 1032 (1112)
++|.......-+|++|+|+.|++.... + ......+.|.|.+- .-+-+.+|+...+. |.....
T Consensus 125 ~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg----------~~i~~tLWg~~A~~--f~~~~~ 192 (444)
T 4gop_C 125 NELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGN----------RSVKLTLWGKTAET--FPTNAG 192 (444)
T ss_dssp GGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTC----------BEEEEEEEHHHHHT--STTSTT
T ss_pred HHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCC----------CEEEEEEEhhhhhh--hhhhhc
Confidence 555555556789999999999996431 1 13456899999982 47888999765532 221112
Q ss_pred cccCceEEeeceEEeccCCCCCeeEEEeccceeeEecCCCCCChhHHHHHHHHHHHH
Q 001266 1033 NLVGSTVGFCNLIKRPKDHLNHIWVAEATENSSYFLSFDFPTCSHLRSAAASAQSWA 1089 (1112)
Q Consensus 1033 ~~~G~vV~f~NL~~r~~D~~n~i~va~AtE~s~~sl~~~~~~~~~l~~a~~~l~~wa 1089 (1112)
...|+||+|.+.....+. + . .+-+.-.|++.+||+.|-. ..|+.|-
T Consensus 193 ~~~~~VV~i~~~kV~~f~-G--~-~ls~~~~s~i~inPdipea-------~~l~~w~ 238 (444)
T 4gop_C 193 VDEKPVLAFKGVKVGDFG-G--R-SLSMFSSSTMLINPDITES-------HVLRGWY 238 (444)
T ss_dssp SSSCCEEEEESCEEECTT-S--S-EEECCTTCEEEESCSSHHH-------HHHHHHH
T ss_pred cCCCCEEEEEeEEEeecC-C--e-EEeccccceEEECCCCHHH-------HHHHHHH
Confidence 356999999999998774 2 2 3456889999999987443 4556664
No 6
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=92.76 E-value=0.24 Score=48.24 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=56.5
Q ss_pred chhhhhHhCCCCCCCeEEEEEEeeeecCCCCcCCCccccCCCCCCcccEEEEeeceeEEec-cccHHHHHHHHcCCcccC
Q 001266 587 SAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSYAAKLELTDGWYSVDA-FLDVLLSKHLAAGKLFVG 665 (1112)
Q Consensus 587 SaLRrIlE~D~~~s~~MVLcVs~I~~~~~~~~e~~~~~~~g~~~~~~~~LELTDGWY~IkA-~lD~~L~~~l~~GkI~vG 665 (1112)
=+|.+|++.+.....| ||=|.++..... + ....-..+.|+||=|.+.| -|...|..++++|.|..|
T Consensus 11 Gai~~I~~~~~~~~~P-vlQVl~~K~i~~-----------~-~~~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~ 77 (123)
T 2b29_A 11 GAIAAIMQKGDTNIKP-ILQVINIRPITT-----------G-NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSN 77 (123)
T ss_dssp THHHHHHHHCCCSCCC-EEEEEEEEEECC-----------T-TSCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTT
T ss_pred hHHHHHHhcCCCCCCc-eEEEEeeeecCC-----------C-CCCceEEEEEECcchheeeehhHHHHHHHHhcCCccCC
Confidence 4677888733444556 777777764321 0 1135799999999999999 999999999999999999
Q ss_pred ceEEEEcc
Q 001266 666 QKLRIWGA 673 (1112)
Q Consensus 666 ~KL~I~GA 673 (1112)
.-++|.--
T Consensus 78 sIirl~~y 85 (123)
T 2b29_A 78 CVCQIHRF 85 (123)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99999543
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=91.93 E-value=1.4 Score=41.31 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=67.6
Q ss_pred cCCCCCCCccceEEEEEEeCCcc---cccc--cceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCccccccc
Q 001266 961 LGEVPLSSEFDIAAFVVHVGDVY---EDSQ--QKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLV 1035 (1112)
Q Consensus 961 l~~~P~~~EfD~vG~Vv~Vg~~~---~~~~--qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~ 1035 (1112)
+.+..++..+|++|+|..+++.. +.+. .....+.|.|.+. -+-+.||....+. ++.+.+
T Consensus 10 I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-----------~I~~t~w~~~~~~-----~~~l~~ 73 (115)
T 2k50_A 10 ISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-----------ELRAVFWTENIKL-----LKKFRE 73 (115)
T ss_dssp TTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-----------EEEEEEETTGGGG-----GGTCCT
T ss_pred HHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-----------eEEEEEeCchhhh-----hhcCCC
Confidence 33444688999999999997755 2222 4567789999982 4557788654321 245788
Q ss_pred CceEEeeceEEec-cCCCCCeeEEEeccceeeEecCCCCCChh
Q 001266 1036 GSTVGFCNLIKRP-KDHLNHIWVAEATENSSYFLSFDFPTCSH 1077 (1112)
Q Consensus 1036 G~vV~f~NL~~r~-~D~~n~i~va~AtE~s~~sl~~~~~~~~~ 1077 (1112)
|.+|.+.|...+. |. .-+.......+.+...|+...-+|
T Consensus 74 G~vv~i~g~~v~~~f~---g~~qL~~~~~~~i~~~~~~~~~~~ 113 (115)
T 2k50_A 74 GDVIRIKDVNIRGGFG---GRKEAHLMPRSTVEVLDPLEHHHH 113 (115)
T ss_dssp TSEEEEEEEEECCCSS---SSCEEEECTTCCEEEESSCCC---
T ss_pred CCEEEEEeeEEccccC---CeEEEEECCCceEEECCccccccc
Confidence 9999999998764 54 335666788889999998865443
No 8
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=85.87 E-value=4.9 Score=44.00 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=68.3
Q ss_pred CCccceEEEEEEeCCcccc-cccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCccccc-ccCceEEeece
Q 001266 967 SSEFDIAAFVVHVGDVYED-SQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYN-LVGSTVGFCNL 1044 (1112)
Q Consensus 967 ~~EfD~vG~Vv~Vg~~~~~-~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~-~~G~vV~f~NL 1044 (1112)
+.-++++|+|+.++.+... +....-.+-|+|.|+. . |.|.|..+.++. -| .+ .+|+||-|.|+
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~---------g-l~v~iF~~~~~~---LP--~v~~~GDII~l~~v 79 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV---------K-LTCLLFSGNYEA---LP--IIYKNGDIVRFHRL 79 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC---------E-EEEEEEESSGGG---SC--CCCSTTCEEEEEEE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC---------C-EEEEEECCChHH---CC--CCCCCCCEEEEEEE
Confidence 5679999999999987654 2334556899999963 2 556665565543 24 34 78999999999
Q ss_pred EEeccCCCCCeeEEEe-ccceeeEecCCC-----CC--------ChhHHHHHHHHHHHHhhhh
Q 001266 1045 IKRPKDHLNHIWVAEA-TENSSYFLSFDF-----PT--------CSHLRSAAASAQSWAKISS 1093 (1112)
Q Consensus 1045 ~~r~~D~~n~i~va~A-tE~s~~sl~~~~-----~~--------~~~l~~a~~~l~~wa~~s~ 1093 (1112)
..+.++..- .+.+ ...+-|...... |. -.+=+.-+..|++|+..+.
T Consensus 80 ki~~~~g~~---~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~ 139 (294)
T 1xjv_A 80 KIQVYKKET---QGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHM 139 (294)
T ss_dssp EEEEETTEE---EEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCeE---EEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhcc
Confidence 999776432 2222 222323222211 11 1223456889999996543
No 9
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=85.70 E-value=2.8 Score=39.36 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=45.4
Q ss_pred eeEEEEEeeccccccCCCCCCceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeCC
Q 001266 865 PFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPLS 939 (1112)
Q Consensus 865 p~~klRV~d~~~k~~~~k~~~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L~ 939 (1112)
+++.+.|.|- ...+.+++|+...+....|++|..|.|.+......-.+.++|.+.. .+.-...+
T Consensus 43 ~~~~~~l~D~----------TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~-~~~i~~~~ 106 (115)
T 2k50_A 43 KLANVIIADD----------TGELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGFGGRKEAHLMP-RSTVEVLD 106 (115)
T ss_dssp EEEEEEEEET----------TEEEEEEEETTGGGGGGTCCTTSEEEEEEEEECCCSSSSCEEEECT-TCCEEEES
T ss_pred EEEEEEEEeC----------CCeEEEEEeCchhhhhhcCCCCCEEEEEeeEEccccCCeEEEEECC-CceEEECC
Confidence 5666777762 3588999999987777889999999999987554334567776643 34444444
No 10
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=85.31 E-value=10 Score=41.49 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=88.8
Q ss_pred eEEEEEeeccccccCCCCCCceEEEEEeCCChhhhccc-ccccEEEEEeeecCCCCCCceeEeeeecceeeee--CCccc
Q 001266 866 FMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCEL-VEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQP--LSPLA 942 (1112)
Q Consensus 866 ~~klRV~d~~~k~~~~k~~~~~aiLTIWrPsedl~~~L-~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~--L~~~~ 942 (1112)
++.|+|+|-. ...+.+.|+++..+.+-.+ .+|..+++.++.-...+ +.+++-.. ..|.- .....
T Consensus 39 ~~tl~I~D~S---------~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vki~~~~-g~~~~v~~---~~~s~~~f~g~~ 105 (294)
T 1xjv_A 39 CSVVTIVDQT---------NVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYK-KETQGITS---SGFASLTFEGTL 105 (294)
T ss_dssp EEEEEEECTT---------CCEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEET-TEEEEEEE---EEEEEEEECCST
T ss_pred EEEEEEEcCC---------CCCEEEEEECCChHHCCCCCCCCCEEEEEEEEEEEEC-CeEEEEcc---CCeEEEEECCCC
Confidence 5778888843 1248888999977766655 99999999998655433 33333221 22321 11100
Q ss_pred cccCCC-----CcCCc-------------------ceecccccCCCCCCCccceEEEEEEeCCcccccccceeEEEEecC
Q 001266 943 TEHFKP-----FFSPR-------------------RSVLISNLGEVPLSSEFDIAAFVVHVGDVYEDSQQKKQWVFVTDG 998 (1112)
Q Consensus 943 ~~~~~~-----~y~PR-------------------~~v~~s~l~~~P~~~EfD~vG~Vv~Vg~~~~~~~qk~QwvflaD~ 998 (1112)
...+.| .|.+. ..-.+..|.+.-.+.-||++|=||++.... ...-.+||+|+
T Consensus 106 ~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di~~~~f~DLv~qVv~v~~~~----~~~~~LyVwDg 181 (294)
T 1xjv_A 106 GAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVD----GASFLLKVWDG 181 (294)
T ss_dssp TCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGCCSSCEEEEEEEEEEEEECS----SSEEEEEEECS
T ss_pred CCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHcccCCeeeEEEEEEEEEecC----CCeEEEEEECC
Confidence 001111 11111 000123444555568999999999986533 34468999999
Q ss_pred ccccccc-----c------cc------cCceEEEEeecCCcCCCCCCcccccccCceEEeeceEEecc
Q 001266 999 SMLELQL-----E------DL------SKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCNLIKRPK 1049 (1112)
Q Consensus 999 s~~~~~~-----~------~~------~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~NL~~r~~ 1049 (1112)
+...... + +. ..-.+-|.+|-+-. .+ +..+++|..|-|.|+..+..
T Consensus 182 T~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~---~~--~~~lk~Gd~V~l~Nv~~k~~ 244 (294)
T 1xjv_A 182 TRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHV---HV--ARSLKVGSFLRIYSLHTKLQ 244 (294)
T ss_dssp SCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHH---HH--HHHCCTTCEEEEEEEEEEEE
T ss_pred CCCCCCccccccccccccCcccccccccCeeEEEEEEcchh---HH--HhcCCCCcEEEEeeeEEEec
Confidence 8541110 0 00 11123444553211 11 23578999999999997633
No 11
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=60.80 E-value=51 Score=34.35 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred CCCCCccceEEEEEEeCCcccc--cc-cceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCccccc-ccCceE
Q 001266 964 VPLSSEFDIAAFVVHVGDVYED--SQ-QKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYN-LVGSTV 1039 (1112)
Q Consensus 964 ~P~~~EfD~vG~Vv~Vg~~~~~--~~-qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~-~~G~vV 1039 (1112)
...+.-+++.|+|+.++.+... +. -..=.+-|.|.|+. ..... |.|.|=.+-.+. -| .+ .+|+||
T Consensus 39 ~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~-----~~~~g-L~v~iF~~~~e~---LP--~V~~~GDII 107 (187)
T 1qzg_A 39 QKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCD-----TSSIG-LQIHLFSKQGND---LP--VIKQVGQPL 107 (187)
T ss_dssp CSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSC-----TTSCC-EEEEEEESSSSC---SC--CCCSTTCEE
T ss_pred ccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCC-----CCCCc-eEEEEECCChhh---CC--CCCCCCCEE
Confidence 4556679999999999998865 22 23445889999942 11123 444444444432 24 33 689999
Q ss_pred EeeceEEeccCCC
Q 001266 1040 GFCNLIKRPKDHL 1052 (1112)
Q Consensus 1040 ~f~NL~~r~~D~~ 1052 (1112)
-|.|+..+.++..
T Consensus 108 lL~rvkiq~~~g~ 120 (187)
T 1qzg_A 108 LLHQITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEETTE
T ss_pred EEEEEEEEEECCe
Confidence 9999999987754
No 12
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=55.04 E-value=1.4e+02 Score=35.29 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=53.4
Q ss_pred CCCccceEEEEEEeCCccccc-ccceeEEEEecCccccc--ccccccCceEEEEeecCCcCCCCCCccccc-ccCceEEe
Q 001266 966 LSSEFDIAAFVVHVGDVYEDS-QQKKQWVFVTDGSMLEL--QLEDLSKSLLAISISSPYIDDDSFSPINYN-LVGSTVGF 1041 (1112)
Q Consensus 966 ~~~EfD~vG~Vv~Vg~~~~~~-~qk~QwvflaD~s~~~~--~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~-~~G~vV~f 1041 (1112)
.+.-+++.|||+.++.++... ....-.+-|+|.++.+- ....+..+++.|.|=.+-+++ -| .. .+|+||-|
T Consensus 48 ~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~---LP--~V~~~GDII~L 122 (495)
T 1jb7_A 48 SAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED---LP--IIHRAGDIIRV 122 (495)
T ss_dssp CCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG---SC--CCCEETCEEEE
T ss_pred cCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHH---CC--CCCCCCCEEEE
Confidence 466799999999999988652 22234588999997411 000122355566655554443 24 34 58999999
Q ss_pred eceEEeccCC
Q 001266 1042 CNLIKRPKDH 1051 (1112)
Q Consensus 1042 ~NL~~r~~D~ 1051 (1112)
.|+..+.++.
T Consensus 123 hrvkIq~~ng 132 (495)
T 1jb7_A 123 HRATLRLYNG 132 (495)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEECC
Confidence 9999987764
No 13
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=54.74 E-value=30 Score=34.47 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=46.4
Q ss_pred CCchhhhhHhCCCCCCCeEEEEEEeeeecC-CCCcCCCccccCCCCCCcccEEEEeeceeEEeccccHHHHHHH
Q 001266 585 HRSAIKRILEGDALPSSMMVLCISAIHMNC-VPKIETHPEAQNGAENSYAAKLELTDGWYSVDAFLDVLLSKHL 657 (1112)
Q Consensus 585 ~RSaLRrIlE~D~~~s~~MVLcVs~I~~~~-~~~~e~~~~~~~g~~~~~~~~LELTDGWY~IkA~lD~~L~~~l 657 (1112)
-||.||-.+-+-++.++|.---+..+.... ....+..+.... ....+.|.+|||-|+|++.+-..-....
T Consensus 6 lrPWIreL~lg~~~~ssP~~gQllevlq~ae~~~~gps~apdt---~~v~A~llvSDgthsvrclvTrEA~~~s 76 (161)
T 2i46_A 6 LRPWIRELILGSETPSSPRAGQLLEVLQDAEAAVAGPSHAPDT---SDVGATLLVSDGTHSVRCLVTREALDTS 76 (161)
T ss_dssp CCCCHHHHHHSSSCCCSCEEEEEEEEEECCCCCCCSCCSSCCC---TTSCEEEEEECSSCEEEEEECHHHHHTS
T ss_pred ccHHHHHHHhcccccCCcchHHHHHHHHHhccccCCCCCCCCC---CCceeEEEEcCCceEEEEEecHHHhhhh
Confidence 389999999999999999777777766522 100000001111 1246899999999999999877554444
No 14
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=54.51 E-value=15 Score=36.65 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=41.6
Q ss_pred eEEEEEeecccc----ccCC-------CC--CCceEEEEEeCCChhhhc-ccccccEEEEEeeecCCCCCCcee
Q 001266 866 FMRVRVVGLTGK----NYQG-------KG--SSREGIITIWNPAEKQQC-ELVEGQAYAILGLIPMNSDSNTLY 925 (1112)
Q Consensus 866 ~~klRV~d~~~k----~~~~-------k~--~~~~aiLTIWrPsedl~~-~L~EG~ry~V~~L~ps~~~s~~l~ 925 (1112)
...|.|+|++.. ++.- +| +..+.+||+|+|-..... .|++|+.++++|+...-++++-+.
T Consensus 32 ~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LE 105 (143)
T 4hik_A 32 NFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLE 105 (143)
T ss_dssp CEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEE
T ss_pred eEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEE
Confidence 456899998741 1110 11 346999999999887654 599999999999976555555333
No 15
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=52.93 E-value=1.3e+02 Score=28.26 Aligned_cols=82 Identities=9% Similarity=0.015 Sum_probs=56.3
Q ss_pred CccceEEEEEEeCCcc--c-ccc-cceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEEeec
Q 001266 968 SEFDIAAFVVHVGDVY--E-DSQ-QKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCN 1043 (1112)
Q Consensus 968 ~EfD~vG~Vv~Vg~~~--~-~~~-qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~N 1043 (1112)
..+|++|+|+.+++.. . .+. .....+-|.|.+- . +-..+|....+ .+.+|.+|.+.|
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG----------~-I~~tlW~~~~~--------~~~~G~vv~i~~ 73 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG----------R-VKLTLWGKHAG--------SIKEGQVVKIEN 73 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE----------E-EEEEEEGGGTT--------CCCTTCEEEEEE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC----------E-EEEEEECChhh--------cCCCCCEEEEEe
Confidence 4799999999998733 2 222 3678899999982 2 55667754321 356899999999
Q ss_pred eEEeccCCCCCeeEEEeccceeeEecCC
Q 001266 1044 LIKRPKDHLNHIWVAEATENSSYFLSFD 1071 (1112)
Q Consensus 1044 L~~r~~D~~n~i~va~AtE~s~~sl~~~ 1071 (1112)
-....|.- -........+++...++
T Consensus 74 g~v~~~~g---~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 74 AWTTAFKG---QVQLNAGSKTKIAEASE 98 (119)
T ss_dssp EEEEEETT---EEEEEECTTCEEEECCC
T ss_pred EEEEEeCC---EEEEEECCCEEEEEcCC
Confidence 98887753 34445556666666553
No 16
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=49.44 E-value=39 Score=31.63 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=33.8
Q ss_pred CceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeCC
Q 001266 885 SREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPLS 939 (1112)
Q Consensus 885 ~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L~ 939 (1112)
..++.+|+|++. |++|+.|+|.|-..... .+.++|.+. +.++-+++.
T Consensus 48 TG~I~~tlW~~~------l~~Gdvv~i~ng~v~~~-~g~~~L~v~-~~~~I~~~~ 94 (106)
T 2k75_A 48 TARIRISSFGKQ------LQDSDVVRIDNARVAQF-NGYLSLSVG-DSSRIESVN 94 (106)
T ss_dssp SCEEEEEEESSC------CCTTEEEEEEEEEEEEE-TTEEEEEEC-TTSEEEECC
T ss_pred CCeEEEEEEcCc------cCCCCEEEEEeeEEeEE-CCEEEEEEC-CcEEEEECC
Confidence 358999999987 99999999997554433 355677664 355566654
No 17
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=46.90 E-value=71 Score=29.82 Aligned_cols=76 Identities=9% Similarity=-0.049 Sum_probs=50.7
Q ss_pred CccceEEEEEEeCCcc-ccccc--ceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEEeece
Q 001266 968 SEFDIAAFVVHVGDVY-EDSQQ--KKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCNL 1044 (1112)
Q Consensus 968 ~EfD~vG~Vv~Vg~~~-~~~~q--k~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~NL 1044 (1112)
..|+++|.|+.++++. ..+.+ +...+-|+|.+- -+-..+|.+. +.+|.+|-+.|-
T Consensus 14 ~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG-----------~I~~tlW~~~-----------l~~Gdvv~i~ng 71 (106)
T 2k75_A 14 PYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA-----------RIRISSFGKQ-----------LQDSDVVRIDNA 71 (106)
T ss_dssp SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC-----------EEEEEEESSC-----------CCTTEEEEEEEE
T ss_pred ceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC-----------eEEEEEEcCc-----------cCCCCEEEEEee
Confidence 4599999999999873 32221 255789999982 3455667432 567999999998
Q ss_pred EEeccCCCCCeeEEEeccceeeEe
Q 001266 1045 IKRPKDHLNHIWVAEATENSSYFL 1068 (1112)
Q Consensus 1045 ~~r~~D~~n~i~va~AtE~s~~sl 1068 (1112)
..+-+.- -........+++..
T Consensus 72 ~v~~~~g---~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 72 RVAQFNG---YLSLSVGDSSRIES 92 (106)
T ss_dssp EEEEETT---EEEEEECTTSEEEE
T ss_pred EEeEECC---EEEEEECCcEEEEE
Confidence 8877653 34444445555543
No 18
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=46.85 E-value=54 Score=30.69 Aligned_cols=66 Identities=14% Similarity=-0.036 Sum_probs=44.5
Q ss_pred CCCccceEEEEEEeCCcccc-c-c---cceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEE
Q 001266 966 LSSEFDIAAFVVHVGDVYED-S-Q---QKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVG 1040 (1112)
Q Consensus 966 ~~~EfD~vG~Vv~Vg~~~~~-~-~---qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~ 1040 (1112)
++.-+|+.|.|+.++++... . . .+.-.+.|.|.+- -+-+.+|..-.+. .+.+|.+|.
T Consensus 13 ~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG-----------~IrvtlW~~~a~~-------~l~~Gdvv~ 74 (105)
T 3dm3_A 13 PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG-----------SIRVTLWDNLTDI-------DVGRGDYVR 74 (105)
T ss_dssp SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE-----------EEEEEEEGGGGGS-------CCCTTCEEE
T ss_pred CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-----------cEEEEEECccccc-------ccCCCCEEE
Confidence 35789999999999985432 1 1 2233588999872 3677788553321 467899999
Q ss_pred eeceEEeccC
Q 001266 1041 FCNLIKRPKD 1050 (1112)
Q Consensus 1041 f~NL~~r~~D 1050 (1112)
| |-..+..+
T Consensus 75 i-~g~vk~~~ 83 (105)
T 3dm3_A 75 V-RGYIREGY 83 (105)
T ss_dssp E-EEEEEECT
T ss_pred E-EEEEEEcc
Confidence 9 77555443
No 19
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=44.48 E-value=45 Score=31.54 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=40.5
Q ss_pred eeeEEEEEeeccccccCCCCCCceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeCC
Q 001266 864 TPFMRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPLS 939 (1112)
Q Consensus 864 tp~~klRV~d~~~k~~~~k~~~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L~ 939 (1112)
.+++.+.|.|- ...+.+++|+...+ .|++|..|.|.+...... .+.++|.+.+ .++-..++
T Consensus 37 ~~~~~~~l~D~----------TG~I~~tlW~~~~~---~~~~G~vv~i~~g~v~~~-~g~~qL~i~~-~~~i~~~~ 97 (119)
T 1o7i_A 37 RTISEAIVGDE----------TGRVKLTLWGKHAG---SIKEGQVVKIENAWTTAF-KGQVQLNAGS-KTKIAEAS 97 (119)
T ss_dssp EEEEEEEEEET----------TEEEEEEEEGGGTT---CCCTTCEEEEEEEEEEEE-TTEEEEEECT-TCEEEECC
T ss_pred EEEEEEEEEeC----------CCEEEEEEECChhh---cCCCCCEEEEEeEEEEEe-CCEEEEEECC-CEEEEEcC
Confidence 35666666662 35799999998763 589999999997655444 3556676642 44444443
No 20
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=43.77 E-value=97 Score=36.64 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=68.9
Q ss_pred eEEEEEeeccccccCCC--C-CCceEEEEEeCCChhhhccc-ccccEEEEEeeecCCCCCCceeEeee-ecceeeeeCCc
Q 001266 866 FMRVRVVGLTGKNYQGK--G-SSREGIITIWNPAEKQQCEL-VEGQAYAILGLIPMNSDSNTLYLQAR-GSTTKWQPLSP 940 (1112)
Q Consensus 866 ~~klRV~d~~~k~~~~k--~-~~~~aiLTIWrPsedl~~~L-~EG~ry~V~~L~ps~~~s~~l~L~~r-~~~Trw~~L~~ 940 (1112)
++.|+|+|-.......+ | +...+.+.|.++..+.+=.+ .+|..+++.++.-.... +..++-++ +..+.|--...
T Consensus 73 ~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~LP~V~~~GDII~LhrvkIq~~n-g~~~~v~~~~~~SswavF~~ 151 (495)
T 1jb7_A 73 ICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYN-GQRQFNANVFYSSSWALFST 151 (495)
T ss_dssp EEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEEEET-TEEEEEEETTTTCEEEEECS
T ss_pred EEEEEEEeCCCCcccccccccccCceEEEEECCChHHCCCCCCCCCEEEEEEEEEEEEC-CcEEEEecCCCceEEEEEeC
Confidence 56677777432100000 1 12344788888866655555 69999999988655443 33343232 22256665543
Q ss_pred cc------------cccCCCC------cCCcc------------------------eecccccC-CCCCCCccceEEEEE
Q 001266 941 LA------------TEHFKPF------FSPRR------------------------SVLISNLG-EVPLSSEFDIAAFVV 977 (1112)
Q Consensus 941 ~~------------~~~~~~~------y~PR~------------------------~v~~s~l~-~~P~~~EfD~vG~Vv 977 (1112)
.. ...+.|. |.... .-.|..|. ++-.+.-||++|-||
T Consensus 152 ~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv 231 (495)
T 1jb7_A 152 DKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKIL 231 (495)
T ss_dssp SSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEE
T ss_pred CccccccccCCcccCcccCCccccCCCccCCHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEe
Confidence 22 0111111 11110 01122333 444457899999999
Q ss_pred EeCCcccccccceeEEEEecCcc
Q 001266 978 HVGDVYEDSQQKKQWVFVTDGSM 1000 (1112)
Q Consensus 978 ~Vg~~~~~~~qk~QwvflaD~s~ 1000 (1112)
++-... ...=.+||.|++-
T Consensus 232 ~~~~~d----~~~~~L~VwDgT~ 250 (495)
T 1jb7_A 232 QVHELD----EYTNELKLKDASG 250 (495)
T ss_dssp EEEECS----SSEEEEEEEETTC
T ss_pred EEeccC----CCeEEEEEEeCCC
Confidence 986532 2445699999983
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=40.48 E-value=50 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.6
Q ss_pred ceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeee
Q 001266 886 REGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQAR 929 (1112)
Q Consensus 886 ~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r 929 (1112)
.++-+|+|+...++ .|.+|..|.|.+-+ .-.+.+.+.|++-
T Consensus 52 G~IrvtlW~~~a~~--~l~~Gdvv~i~g~v-k~~~~g~~eL~~g 92 (105)
T 3dm3_A 52 GSIRVTLWDNLTDI--DVGRGDYVRVRGYI-REGYYGGLECTAN 92 (105)
T ss_dssp EEEEEEEEGGGGGS--CCCTTCEEEEEEEE-EECTTSSEEEEEE
T ss_pred CcEEEEEECccccc--ccCCCCEEEEEEEE-EEccCCCEEEEeC
Confidence 48999999987765 79999999994422 2223456777664
No 22
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=39.33 E-value=1.1e+02 Score=28.58 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=50.3
Q ss_pred CCCCccceEEEEEEeCCcccccccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEEeece
Q 001266 965 PLSSEFDIAAFVVHVGDVYEDSQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCNL 1044 (1112)
Q Consensus 965 P~~~EfD~vG~Vv~Vg~~~~~~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~NL 1044 (1112)
|....||++|.|+.+.++.. ....|-+-|.|.+- -+-..+|.... ...+.+|.+|-+.|.
T Consensus 13 ~~~~~v~v~~~V~~~~~~~~--~~~~~~~~l~DeTG-----------~I~~t~W~~~~-------~~~~~~G~~V~i~n~ 72 (109)
T 2kbn_A 13 ENGQWANLKAKVIQLWENTH--ESISQVGLLGDETG-----------IIKFTIWKNAE-------LPLLEQGESYLLRSV 72 (109)
T ss_dssp STTCEEEEEEEEEEEEECCC--SSEEEEEEEECTTC-----------CEEEEEEGGGC-------CCCCCTTCEEEEEEE
T ss_pred CCCCcEEEEEEEEEeEcCCC--CeEEEEEEEECCCC-----------eEEEEEECccc-------ccccCCCCEEEEEEE
Confidence 44678999999999997442 35677889999982 34556674221 225678999999999
Q ss_pred EEeccCCCCCe
Q 001266 1045 IKRPKDHLNHI 1055 (1112)
Q Consensus 1045 ~~r~~D~~n~i 1055 (1112)
..+-|.-..+|
T Consensus 73 ~v~~~~G~~~L 83 (109)
T 2kbn_A 73 VVGEYNDRFQV 83 (109)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 98877743333
No 23
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=32.96 E-value=62 Score=30.31 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=30.9
Q ss_pred CceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeee
Q 001266 885 SREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQAR 929 (1112)
Q Consensus 885 ~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r 929 (1112)
...+.+|+|+... ...|+||+.|+|.|-....++ +.++|.+.
T Consensus 45 TG~I~~t~W~~~~--~~~~~~G~~V~i~n~~v~~~~-G~~~L~v~ 86 (109)
T 2kbn_A 45 TGIIKFTIWKNAE--LPLLEQGESYLLRSVVVGEYN-DRFQVQVN 86 (109)
T ss_dssp TCCEEEEEEGGGC--CCCCCTTCEEEEEEEEEEEET-TEEEEEEC
T ss_pred CCeEEEEEECccc--ccccCCCCEEEEEEEEEEEEC-CEEEEEEC
Confidence 3588999999662 368999999999986555543 56666553
No 24
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=28.88 E-value=81 Score=31.49 Aligned_cols=49 Identities=10% Similarity=-0.080 Sum_probs=33.4
Q ss_pred CceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeC
Q 001266 885 SREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPL 938 (1112)
Q Consensus 885 ~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L 938 (1112)
...+.+|+|+.. .+.|+||..|.|.|....-. .+.+.|.+. +.++-+.+
T Consensus 72 TG~I~ftlW~e~---~~~l~~Gd~v~i~na~v~~~-~G~~~L~vg-k~g~Ie~~ 120 (145)
T 1wjj_A 72 TGCILFTARNDQ---VDLMKPGATVILRNSRIDMF-KGTMRLGVD-KWGRIEAT 120 (145)
T ss_dssp SCEEEEEECTTH---HHHTCTTCEEEEEEEEEEEE-TTEEEEEEC-TTCCBCCC
T ss_pred CcEEEEEEecCC---cCcCCCCCEEEEeccEEEeE-CCEEEEEEC-CCEEEEEC
Confidence 368999999953 35699999999999765543 355666653 23444443
No 25
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=26.85 E-value=97 Score=28.32 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.9
Q ss_pred ceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEee
Q 001266 886 REGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQA 928 (1112)
Q Consensus 886 ~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~ 928 (1112)
.++.+|+|+...++ .|++|..|.|.+-+-.. .+.+.|++
T Consensus 49 G~I~~tlW~~~~~~--~i~~Gdvv~i~g~v~~~--~~~~el~~ 87 (97)
T 3e0e_A 49 GSIRGTLWNELADF--EVKKGDIAEVSGYVKQG--YSGLEISV 87 (97)
T ss_dssp EEEEEEEEGGGGGC--CCCTTCEEEEEEEEEEC----CEEEEE
T ss_pred CcEEEEEECCcccc--ccCCCCEEEEEEEEEEc--CCeEEEEE
Confidence 58999999988775 79999999996643222 23566655
No 26
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=25.48 E-value=3.4e+02 Score=26.96 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=46.4
Q ss_pred cCCCCCCCccceEEEEEEeCCcccccccceeEEEEecCccccccc-----cc-------ccCceEEEEeecCCcCCCCCC
Q 001266 961 LGEVPLSSEFDIAAFVVHVGDVYEDSQQKKQWVFVTDGSMLELQL-----ED-------LSKSLLAISISSPYIDDDSFS 1028 (1112)
Q Consensus 961 l~~~P~~~EfD~vG~Vv~Vg~~~~~~~qk~QwvflaD~s~~~~~~-----~~-------~~~~lLaI~f~~~~~~~~sf~ 1028 (1112)
|.+..++.=||++|=||.+-. .+ ..-.+||||-+-+.... ++ -..--|=|..|-|-. +|+
T Consensus 8 lkdv~~~~F~Dl~~qVv~~~~---~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha---~~a 79 (143)
T 4hik_A 8 LSQITPHQRCSFYAQVIKTWY---SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHD---FYC 79 (143)
T ss_dssp GGGCCSSCEEEEEEEEEEEEE---CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHH---HHH
T ss_pred HHhCCCCCeEEEEEEEEEEEc---CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHH---HHH
Confidence 344556777999999999542 21 56679999998542111 00 011133344442211 122
Q ss_pred cccccccCceEEeeceEEe
Q 001266 1029 PINYNLVGSTVGFCNLIKR 1047 (1112)
Q Consensus 1029 ~~~~~~~G~vV~f~NL~~r 1047 (1112)
- +.+++|+.|.+.|+...
T Consensus 80 r-~~lk~Gd~v~L~Nv~iK 97 (143)
T 4hik_A 80 R-NYIKEGDYVVMKNVRTK 97 (143)
T ss_dssp T-TTCCTTCEEEEEEEEEE
T ss_pred H-hhCCCCCEEEEEeEEEe
Confidence 2 34788999999999976
No 27
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.67 E-value=2.1e+02 Score=26.73 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=63.9
Q ss_pred ecccccCCCCCCCccceEEEEEEeCCccc----ccccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCccc
Q 001266 956 VLISNLGEVPLSSEFDIAAFVVHVGDVYE----DSQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPIN 1031 (1112)
Q Consensus 956 v~~s~l~~~P~~~EfD~vG~Vv~Vg~~~~----~~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~ 1031 (1112)
..+++| .|-....-+.|-|++.++... .+.++.-.+.|.|.+. -+-..+|....+ .|. +
T Consensus 5 ~~Is~L--~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-----------~I~at~~~~~~~--~f~--~ 67 (114)
T 1ynx_A 5 FAIEQL--SPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-----------EIRATAFNDFAT--KFN--E 67 (114)
T ss_dssp CCGGGC--CTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-----------EEEEEECHHHHH--HHH--H
T ss_pred EEHHHC--CCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-----------eEEEEECHHHHH--HHH--h
Confidence 344555 455567899999999887422 1234556788999871 223334543322 232 3
Q ss_pred ccccCceEEeeceEEec----cCCCCCeeEEEeccceeeEecCCC
Q 001266 1032 YNLVGSTVGFCNLIKRP----KDHLNHIWVAEATENSSYFLSFDF 1072 (1112)
Q Consensus 1032 ~~~~G~vV~f~NL~~r~----~D~~n~i~va~AtE~s~~sl~~~~ 1072 (1112)
.+.+|.++-++|..++. |...++=+....++.|++..-++.
T Consensus 68 ~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 68 ILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp HSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred hcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 67899999999998874 444445566677888888776654
Done!