Query 001266
Match_columns 1112
No_of_seqs 213 out of 235
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 19:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001266.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001266hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyjb3 b.40.4.3 (B:2599-2731) 100.0 7.2E-43 5.3E-47 340.3 11.2 131 586-716 1-131 (133)
2 d1iyjb1 a.170.1.1 (B:2403-2598 100.0 3.6E-31 2.6E-35 267.8 11.6 120 465-584 46-195 (196)
3 d1iyjb4 b.40.4.3 (B:2732-2760, 99.9 5.5E-24 4E-28 197.2 7.2 77 867-952 31-111 (111)
4 d1iyjb2 a.171.1.1 (B:2761-2897 99.8 5.8E-22 4.2E-26 192.5 2.3 119 747-865 1-137 (137)
5 d1iyjb5 b.40.4.3 (B:2980-3117) 99.8 3.1E-19 2.2E-23 171.9 12.0 114 953-1092 1-117 (138)
6 d1mjea2 a.171.1.1 (A:2752-2887 98.2 1.6E-07 1.1E-11 74.4 2.2 43 747-789 1-47 (49)
7 d1jmca2 b.40.4.3 (A:299-420) R 94.9 0.058 4.2E-06 49.9 10.2 107 956-1089 5-117 (122)
8 d2b3ga1 b.40.4.3 (A:3-114) Rep 93.3 0.079 5.7E-06 48.8 7.3 74 587-673 6-80 (112)
9 d1xjva1 b.40.4.3 (A:6-145) Pro 92.7 0.76 5.6E-05 43.4 13.6 110 967-1092 15-138 (140)
10 d1jb7a1 b.40.4.3 (A:36-204) Te 79.7 9.3 0.00068 36.7 12.8 80 967-1052 14-98 (169)
11 d1qzga_ b.40.4.3 (A:) Protecti 64.1 24 0.0017 33.9 11.4 89 967-1066 36-128 (170)
12 d1o7ia_ b.40.4.3 (A:) Archaeal 62.7 35 0.0026 30.0 11.7 87 964-1072 9-99 (115)
13 d1o7ia_ b.40.4.3 (A:) Archaeal 48.1 21 0.0015 31.5 7.4 50 886-940 49-98 (115)
14 d1jmca1 b.40.4.3 (A:183-298) R 37.6 75 0.0054 27.6 9.5 102 957-1075 4-113 (116)
15 d1wjja_ b.40.4.3 (A:) Hypothet 34.3 41 0.003 31.0 7.3 50 885-939 72-121 (145)
16 d1jmca1 b.40.4.3 (A:183-298) R 21.2 35 0.0026 29.9 4.0 53 886-939 49-108 (116)
No 1
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=7.2e-43 Score=340.26 Aligned_cols=131 Identities=38% Similarity=0.567 Sum_probs=109.8
Q ss_pred CchhhhhHhCCCCCCCeEEEEEEeeeecCCCCcCCCccccCCCCCCcccEEEEeeceeEEeccccHHHHHHHHcCCcccC
Q 001266 586 RSAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSYAAKLELTDGWYSVDAFLDVLLSKHLAAGKLFVG 665 (1112)
Q Consensus 586 RSaLRrIlE~D~~~s~~MVLcVs~I~~~~~~~~e~~~~~~~g~~~~~~~~LELTDGWY~IkA~lD~~L~~~l~~GkI~vG 665 (1112)
||+||||+|+|++|++|||||||+|.+.+....++......+.+..+..+||||||||+|+|+||++|+++|++|||+||
T Consensus 1 RsalrkI~E~D~~~s~~mVLcVs~I~~~~~~~~~~~~~~~~~~~~~~~~~lelTDGWYsi~a~lD~~L~~~l~~grl~vG 80 (133)
T d1iyjb3 1 RSALKKILERDDTAAKTLVLCVSDIISLSTNVSETSGSKASSEDSNKVDTIELTDGWYAVKAQLDPPLLALVKSGRLTVG 80 (133)
T ss_dssp CCHHHHHHTTSSTTCCSEEEEEEECCCCC-----------------CCCCEEEECSSCEEEECCCHHHHHHHHHTCSCTT
T ss_pred CcHHHHHHhCCCCccCcEEEEEEEeeccCCccccccccccccccccccceEEEecCCEEEEEEcCHHHHHHHHcCCcccc
Confidence 89999999999999999999999998754222222211122223456778999999999999999999999999999999
Q ss_pred ceEEEEcceeccCCCCCCccccCCccEEEEEeeceeeccccCccccccCCC
Q 001266 666 QKLRIWGAILCGWVGPVSPLEASGSISLQLNINGTYRAHWADRLGFCKGFG 716 (1112)
Q Consensus 666 ~KL~I~GA~L~~~~~~~sPLEa~~~~~L~L~~NstrrA~W~akLGf~~~~~ 716 (1112)
|||+|+||+|+++.++|+|||++++++|+||+||||||+|++|||||++|.
T Consensus 81 qKL~i~GA~L~g~~~~~sPLE~~~s~~L~i~~Nstr~a~w~~kLGf~~~p~ 131 (133)
T d1iyjb3 81 QKIITQGAELVGSPDACAPLEAPDSLRLKISANSTRPARWHSKLGFFHDPR 131 (133)
T ss_dssp CEEEESCCEEESCCSCCCGGGCCSSCEEECCTTTEEECCSSSCSEECSCCS
T ss_pred ceEEEECcEeecCCCCcCcccccCccEEEEeecceeeccccccCcccCCCC
Confidence 999999999999999999999999999999999999999999999999753
No 2
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.97 E-value=3.6e-31 Score=267.83 Aligned_cols=120 Identities=34% Similarity=0.586 Sum_probs=107.4
Q ss_pred CcccchhhccC-CCCCccccc----cccccchhcccccCccceeeecC------------------------CCCcccCH
Q 001266 465 IPRMCVKEYFG-MPPSAQGML----DHLQDQVRQMKSHNADKYMFHDA------------------------SGLNCIGA 515 (1112)
Q Consensus 465 ~~R~~i~~~f~-~~~~~~~~~----~~v~~~v~~i~~~nA~~y~F~~~------------------------~~~~~~G~ 515 (1112)
.||.+|+++++ ..|...+.+ -+|+++++.|+++||++|+|+.. ++.+.+|+
T Consensus 46 ~~RisLr~aV~~~~Ps~~s~kqL~~~GV~~~~~~V~s~nA~~f~F~~~~~~~~~~~~~~~gI~L~Dgg~li~~~~g~~G~ 125 (196)
T d1iyjb1 46 LPRISLQAAVGDSVPSACSPKQLYMYGVSKACISVNSKNAEYFQFAIEDHFGKEALCAGKGFRLADGGWLIPSDDGKAGK 125 (196)
T ss_dssp SCCBCHHHHHTSCCCCCCCSSSHHHHTCCTTGGGCCTTTTTTCCBCHHHHHCTTTSSSTTCEEEGGGEEECCCTTSCBCH
T ss_pred CCchHHHHHhcCCCccccChhhHHhcCcchHheeechhhhhheeeccccccChhhhccCCccccCCCCeEeecCCCcccH
Confidence 38999999988 344444433 48999999999999999999843 45688999
Q ss_pred HHHHHHHHh-CCCCccccCHhHHHHHHHHHHHHHhhhhhcccccccCCCCCHHHHHHHHHHHHHHHHhcC
Q 001266 516 EALFNMLAQ-SGASTQYASKLWVSNHYKWIVWKLACYERCYLAKSAGKFLTVFNVLEELKYRYEREVNNG 584 (1112)
Q Consensus 516 eef~~~L~~-~G~~~~l~~~~WV~NHyrwIVWKLA~~er~~P~~~~~~~lTp~~VL~QLkyRYerEi~~~ 584 (1112)
+||+.+|++ +|+|++|++++||.|||||||||||||+++||+++++++|||++||+||+|||||||+++
T Consensus 126 eEf~~a~l~~pGvdp~Lis~~WV~NHyrwIVWKLA~mer~~P~~~~~~~lt~~~Vl~QL~YRYerEI~~s 195 (196)
T d1iyjb1 126 EEFYRALCDTPGVDPKLISSVWVSNHYRWIVWKLAAMEFAFPKEFANRCLNPERVLLQLKYRYDVEIDNS 195 (196)
T ss_dssp HHHHHHHHTSTTCCGGGCCHHHHHHHHHHHHHHHHHHHHHSTTTTTTTSSSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCCCChhhCChHHHHHHHHHHHHHHHHHHHhCchhhccCcCCHHHHHHHHHHHHHHhhhcc
Confidence 999999988 599999999999999999999999999999999999999999999999999999999876
No 3
>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.88 E-value=5.5e-24 Score=197.20 Aligned_cols=77 Identities=26% Similarity=0.501 Sum_probs=65.0
Q ss_pred EEEEEeeccccccCCCCCCceEEEEEeCCChhhhcccccccEEEEEeeecCCCCC----CceeEeeeecceeeeeCCccc
Q 001266 867 MRVRVVGLTGKNYQGKGSSREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDS----NTLYLQARGSTTKWQPLSPLA 942 (1112)
Q Consensus 867 ~klRV~d~~~k~~~~k~~~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s----~~l~L~~r~~~Trw~~L~~~~ 942 (1112)
|||||+|++ ++ .++++||||||++|++++|+||++|+||||+++.+++ ++++|+++ |+|+|++|+..
T Consensus 31 ~~lRV~DYr-----k~--EKsalLSIWRP~~dl~~lL~EG~r~riyhlt~S~skn~~~~~~vQLtAt-K~Tryq~Lp~s- 101 (111)
T d1iyjb4 31 WKLRVTSYK-----KR--EKSALLSIWRPSSDLPSLLTEGQRYRIYHLSVSKSKNKFEWPSIQLTAT-KRTQYQQLPVS- 101 (111)
T ss_dssp EEEEECBSS-----SS--CCCEEEEEESCCTTTTTTCCTTCCEEEESCCCCCCCCSSCSCCCCCCCC-TTCEEEECCCC-
T ss_pred hhhheeecc-----cc--ccceEEEEeCCcHHHHHHHhcCcEEEEEEEecccccCCCCcceEEEeec-cceeeeEcccc-
Confidence 456999865 22 4589999999999999999999999999999999876 57888885 58999999974
Q ss_pred cccCCCCcCC
Q 001266 943 TEHFKPFFSP 952 (1112)
Q Consensus 943 ~~~~~~~y~P 952 (1112)
.+.+.+.|+|
T Consensus 102 ~e~L~q~y~p 111 (111)
T d1iyjb4 102 SETLLQLYQP 111 (111)
T ss_dssp HHHHTTTCCC
T ss_pred HHHHHHhcCC
Confidence 4677789987
No 4
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.82 E-value=5.8e-22 Score=192.45 Aligned_cols=119 Identities=29% Similarity=0.430 Sum_probs=28.3
Q ss_pred EEEccCCcccccCHHHHHHHHHHHHHHHHHHHHh----hHHHHhhcCCc-------ccccccCc----hhHHHHHHHHhc
Q 001266 747 KERLSDGRSIVRSERMECKVMQLYQHRQSMVVEG----IVSEFQRGNKD-------SHILNDSN----SEGAKLFKMLET 811 (1112)
Q Consensus 747 ~Ek~~~G~~i~Rner~E~k~~~~~~~r~e~l~e~----i~~E~ere~~~-------~~~~~~~~----s~Ga~l~~~le~ 811 (1112)
|||+++|.+||||||+|++++.+|..++.+.+|+ ||.||++++.. ++.+++.+ ++|++||++|++
T Consensus 1 mEk~s~g~~VfRseR~E~kea~~~~~~q~k~lE~L~skiQ~e~e~~~~~~~~~~~~s~s~t~~~v~~Lq~Gael~eale~ 80 (137)
T d1iyjb2 1 VEKTVSGSYIFRNEREEEKEALRFAEAQQKKLEALFTKVHTELKEHEEDIAQRRVLSRALTRQQVHALQDGAELYAAVQD 80 (137)
T ss_dssp EEECSSSSEEEECHHHHHHHHHCC--------------------------------------------------------
T ss_pred CCccCCCCeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHhcccHHHHHHHHHc
Confidence 7999999999999999999999998887666665 66666665321 33444332 599999999999
Q ss_pred cCChHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCcee
Q 001266 812 VAEPEVIMAEMSPEQLTSFATYQAKLEATRQSNMERSIEKALENA---GLRERDVTP 865 (1112)
Q Consensus 812 ~~dp~~l~~~ls~~Ql~~l~~~r~~~~~~~Q~~~~~~i~~aL~~~---g~~~R~Vtp 865 (1112)
++||++||++||++|+.+|++||+++++++|.+|+++|+++|+.+ +..+|+||.
T Consensus 81 a~Dp~~le~~lS~eQl~al~~yq~~l~e~kQ~elq~~~~kale~ae~e~~~~RdVt~ 137 (137)
T d1iyjb2 81 ASDPEHLETCFSEEQLRALNNYRQMLSDKKQARIQSEFRKALEAAEKEEGLSRDVST 137 (137)
T ss_dssp ---------------------------------------------------CCCEEE
T ss_pred CCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999765 555799983
No 5
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.78 E-value=3.1e-19 Score=171.92 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=95.4
Q ss_pred cceeccccc---CCCCCCCccceEEEEEEeCCcccccccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCc
Q 001266 953 RRSVLISNL---GEVPLSSEFDIAAFVVHVGDVYEDSQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSP 1029 (1112)
Q Consensus 953 R~~v~~s~l---~~~P~~~EfD~vG~Vv~Vg~~~~~~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~ 1029 (1112)
|+++.|.++ .++|||+|||+||+||+|.+.+ ...|.|||+|.++ +||+|.||++..|
T Consensus 1 R~~~~f~~l~~~~F~pp~~EvD~VGiVVsv~~~~----~~~~~vYLaD~~~----------Nll~ikfw~~l~e------ 60 (138)
T d1iyjb5 1 RELLPFSKLSDPAFQPPCSEVDVVGVVVSVVKPI----GLAPLVYLSDECL----------HLLVVKFGIDLNE------ 60 (138)
T ss_dssp CCCCCGGGGGCTTCCCGGGEEEEEEECCEEECCS----SSCCEEEEECTTC----------CEEEEEESSCCCS------
T ss_pred CcccchhhccCcccCCCccceeEEEEEEEEccCC----CcCceEEEecccc----------CEEEEEEecCchh------
Confidence 566666655 4599999999999999997644 4568999999996 6999999998643
Q ss_pred ccccccCceEEeeceEEeccCCCCCeeEEEeccceeeEecCCCCCChhHHHHHHHHHHHHhhh
Q 001266 1030 INYNLVGSTVGFCNLIKRPKDHLNHIWVAEATENSSYFLSFDFPTCSHLRSAAASAQSWAKIS 1092 (1112)
Q Consensus 1030 ~~~~~~G~vV~f~NL~~r~~D~~n~i~va~AtE~s~~sl~~~~~~~~~l~~a~~~l~~wa~~s 1092 (1112)
++++|..||.|||+||. +....|+++.|+|+|+||-||.. .|+.++...|+.-.+..
T Consensus 61 --~vkp~~lia~SNLQwR~-~s~s~vPtl~Age~s~FS~~PK~---~Hlqe~~~~Lk~~i~~i 117 (138)
T d1iyjb5 61 --DIKPRVLIAASNLQWRP-ESTSRVPTLFAGNFSVFSASPKE---AHFQERVTNMKHAIENI 117 (138)
T ss_dssp --SCCTTCEEEEEEEEECC-CTTCSSCEEEEEEEEEEESSCSS---HHHHHHHHHHHHHHHHH
T ss_pred --hcCcceEEEEeccEEcc-ccCCCCceEEeeccceecCCccH---HHHHHHHHHHHHHHHHH
Confidence 36899999999999998 44789999999999999988777 89988888887765543
No 6
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.23 E-value=1.6e-07 Score=74.39 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=36.3
Q ss_pred EEEccCCcccccCHHHHHHHHHHH----HHHHHHHHHhhHHHHhhcC
Q 001266 747 KERLSDGRSIVRSERMECKVMQLY----QHRQSMVVEGIVSEFQRGN 789 (1112)
Q Consensus 747 ~Ek~~~G~~i~Rner~E~k~~~~~----~~r~e~l~e~i~~E~ere~ 789 (1112)
||++++|.+||||+|+|+|++.+| +++.++|+.+||.||+++.
T Consensus 1 mEk~~~G~~iFRn~R~EekEA~k~a~~qqKklE~LftKIq~eFe~~e 47 (49)
T d1mjea2 1 VEKTVSGLYIFRSEREEEKEALRFAEAQQKKLEALFTKVHTEGLSRD 47 (49)
T ss_dssp EEECTTSCEEEECGGGTTHHHHHHHHHHHHHHHHHHHHHCC--CCCC
T ss_pred CCccCCCceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 799999999999999999999988 4557899999999998753
No 7
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.93 E-value=0.058 Score=49.86 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=73.9
Q ss_pred ecccccCCCCCCCccceEEEEEEeCCccccc------ccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCc
Q 001266 956 VLISNLGEVPLSSEFDIAAFVVHVGDVYEDS------QQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSP 1029 (1112)
Q Consensus 956 v~~s~l~~~P~~~EfD~vG~Vv~Vg~~~~~~------~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~ 1029 (1112)
+.|+++..+....-+|++|+|+.|++..... ...+-.|.|.|.+ ..-+-|.+|+.-.+. |
T Consensus 5 ~~i~di~~~~~~~~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i~D~t----------~~~i~vtLWg~~a~~--~-- 70 (122)
T d1jmca2 5 TGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTS----------GKVVTATLWGEDADK--F-- 70 (122)
T ss_dssp CCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTT----------CCEEEEEEEHHHHHH--C--
T ss_pred EeHHHhhccCCCCeEEEEEEEEEccCcEEEEEcCCCCceeEEEEEEEcCC----------CCEEEEEEEchHhhh--h--
Confidence 3455555555566799999999999976521 1224479999987 257889999754322 2
Q ss_pred ccccccCceEEeeceEEeccCCCCCeeEEEeccceeeEecCCCCCChhHHHHHHHHHHHH
Q 001266 1030 INYNLVGSTVGFCNLIKRPKDHLNHIWVAEATENSSYFLSFDFPTCSHLRSAAASAQSWA 1089 (1112)
Q Consensus 1030 ~~~~~~G~vV~f~NL~~r~~D~~n~i~va~AtE~s~~sl~~~~~~~~~l~~a~~~l~~wa 1089 (1112)
+ ...+.||+|.++....+.- . .+-.+=.|.+.+||+.| -+..|+.|=
T Consensus 71 -~-~~~~~Vi~~k~~~v~~~~g---~-sL~~~~~s~i~~Npdi~-------ea~~Lr~wy 117 (122)
T d1jmca2 71 -D-GSRQPVLAIKGARVSDFGG---R-SLSVLSSSTIIANPDIP-------EAYKLRGWF 117 (122)
T ss_dssp -C-CTTCCEEEEEEEEEECTTS---S-EEECCSSCEEESSCCSH-------HHHHHHHHH
T ss_pred -C-CCCCCEEEEeeeEEeeccC---c-eEeccCcceEEECCCcH-------HHHHHHHHH
Confidence 1 2467999999999987752 2 34556678999999862 355788883
No 8
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.34 E-value=0.079 Score=48.76 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=57.2
Q ss_pred chhhhhHhCCCCCCCeEEEEEEeeeecCCCCcCCCccccCCCCCCcccEEEEeeceeEEe-ccccHHHHHHHHcCCcccC
Q 001266 587 SAIKRILEGDALPSSMMVLCISAIHMNCVPKIETHPEAQNGAENSYAAKLELTDGWYSVD-AFLDVLLSKHLAAGKLFVG 665 (1112)
Q Consensus 587 SaLRrIlE~D~~~s~~MVLcVs~I~~~~~~~~e~~~~~~~g~~~~~~~~LELTDGWY~Ik-A~lD~~L~~~l~~GkI~vG 665 (1112)
=||..|+++.+...+| ||=|.++..-.. + ...+-..+.|+||-|.+. |-|-..|..++++|.|..|
T Consensus 6 GAi~~I~~~~~~~~~P-VlQVl~~k~i~~-----------~-~~~~RyR~~lSDG~~~~~~amLatqln~~v~~g~l~~~ 72 (112)
T d2b3ga1 6 GAIAAIMQKGDTNIKP-ILQVINIRPITT-----------G-NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSN 72 (112)
T ss_dssp THHHHHHHHCCCCCCC-EEEEEEEEEEC---------------CCCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTT
T ss_pred HHHHHHHhCCCCCCCC-EEEEEeeEeccC-----------C-CCcceEEEEEECcchhhhhhhhhhhhhhhhhcCCccCC
Confidence 4789999755666678 677777754221 0 123568999999999998 7999999999999999999
Q ss_pred ceEEEEcc
Q 001266 666 QKLRIWGA 673 (1112)
Q Consensus 666 ~KL~I~GA 673 (1112)
.-+.+---
T Consensus 73 sii~l~~y 80 (112)
T d2b3ga1 73 CVCQIHRF 80 (112)
T ss_dssp CEEEEEEE
T ss_pred CEEEEeEE
Confidence 98887643
No 9
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.70 E-value=0.76 Score=43.36 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=69.1
Q ss_pred CCccceEEEEEEeCCcccccc-cceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceEEeeceE
Q 001266 967 SSEFDIAAFVVHVGDVYEDSQ-QKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTVGFCNLI 1045 (1112)
Q Consensus 967 ~~EfD~vG~Vv~Vg~~~~~~~-qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV~f~NL~ 1045 (1112)
+.-+++.|+|+..+.++..+. .-.-.+-|+|.++. . |.|.+-.+.++. -|. .-.+|+||.|.|+.
T Consensus 15 ~~~vnv~gVV~~~~~p~~s~g~D~~~tl~I~D~S~~---------g-l~v~iF~~~~~~---LP~-v~~~GDII~l~r~~ 80 (140)
T d1xjva1 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV---------K-LTCLLFSGNYEA---LPI-IYKNGDIVRFHRLK 80 (140)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC---------E-EEEEEEESSGGG---SCC-CCSTTCEEEEEEEE
T ss_pred CCEEEEEEEEeecCCCEEcCCCeEEEEEEEEeCCCC---------C-eEEEEECCChHH---CCC-CCCCCCEEEEEEEE
Confidence 556999999999999887532 23445889999963 2 444544444443 341 23479999999999
Q ss_pred EeccCCCCCeeEEEeccceeeEec--------C-----CCCCChhHHHHHHHHHHHHhhh
Q 001266 1046 KRPKDHLNHIWVAEATENSSYFLS--------F-----DFPTCSHLRSAAASAQSWAKIS 1092 (1112)
Q Consensus 1046 ~r~~D~~n~i~va~AtE~s~~sl~--------~-----~~~~~~~l~~a~~~l~~wa~~s 1092 (1112)
.+.++.. +......+.+.+... | ....-.|=+.-+..|++||+.+
T Consensus 81 v~~~~~~--~~~~~~~~~ss~~F~g~~g~~~~p~~ss~~~~~~~~d~~~~~~LR~Wa~~~ 138 (140)
T d1xjva1 81 IQVYKKE--TQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTH 138 (140)
T ss_dssp EEEETTE--EEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCe--EEEEecCCEEEEEEeCCCCCcccceEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9977743 222222344444332 1 1122334466699999999764
No 10
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=79.65 E-value=9.3 Score=36.66 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCccceEEEEEEeCCccccccc-ceeEEEEecCccc--ccc-cccccCceEEEEeecCCcCCCCCCccccc-ccCceEEe
Q 001266 967 SSEFDIAAFVVHVGDVYEDSQQ-KKQWVFVTDGSML--ELQ-LEDLSKSLLAISISSPYIDDDSFSPINYN-LVGSTVGF 1041 (1112)
Q Consensus 967 ~~EfD~vG~Vv~Vg~~~~~~~q-k~QwvflaD~s~~--~~~-~~~~~~~lLaI~f~~~~~~~~sf~~~~~~-~~G~vV~f 1041 (1112)
+..+-+.|||+..+.++..+.. -.-.+-|+|.++. ++. .++...-+-+.-|. +.++. -| .+ .+|+||.|
T Consensus 14 ~~~vNv~GVV~~~~~p~~s~g~D~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~-~~~~~---LP--~V~~~GDII~l 87 (169)
T d1jb7a1 14 AQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYA-KRFED---LP--IIHRAGDIIRV 87 (169)
T ss_dssp CSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEE-SSGGG---SC--CCCEETCEEEE
T ss_pred CCeEEEEEEEeecCCceecCCCcEEEEEEEEeCCCCccccccccccCCceEEEEEC-CCHHH---CC--CCCCCCCEEEE
Confidence 4568999999999998876332 2445889999963 111 22233334344444 43432 24 33 47999999
Q ss_pred eceEEeccCCC
Q 001266 1042 CNLIKRPKDHL 1052 (1112)
Q Consensus 1042 ~NL~~r~~D~~ 1052 (1112)
.|+..+.++..
T Consensus 88 ~rv~i~~~~g~ 98 (169)
T d1jb7a1 88 HRATLRLYNGQ 98 (169)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEEECCc
Confidence 99999988753
No 11
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=64.12 E-value=24 Score=33.87 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCccceEEEEEEeCCccccc-cc--ceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCccccc-ccCceEEee
Q 001266 967 SSEFDIAAFVVHVGDVYEDS-QQ--KKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYN-LVGSTVGFC 1042 (1112)
Q Consensus 967 ~~EfD~vG~Vv~Vg~~~~~~-~q--k~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~-~~G~vV~f~ 1042 (1112)
+.=|++.|+|+.++.++... .. ....+-|+|.|+.. . ..-|.|.|=.+.++. -| .+ ..|+||.|.
T Consensus 36 ~~~VnviGVV~~~~~P~rs~~G~~Dy~~tl~I~D~S~~~-----~-~~gl~v~iF~~~~e~---LP--~V~~vGDII~l~ 104 (170)
T d1qzga_ 36 NTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDT-----S-SIGLQIHLFSKQGND---LP--VIKQVGQPLLLH 104 (170)
T ss_dssp CEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCT-----T-SCCEEEEEEESSSSC---SC--CCCSTTCEEEEE
T ss_pred CCEEEEEEEEeeccCceecCCCCCcEEEEEEEEcCCCCC-----C-CCceEEEEECCChHH---CC--CcCCCCCEEEEE
Confidence 45689999999999987652 22 25568899999531 1 122444443344432 24 33 469999999
Q ss_pred ceEEeccCCCCCeeEEEeccceee
Q 001266 1043 NLIKRPKDHLNHIWVAEATENSSY 1066 (1112)
Q Consensus 1043 NL~~r~~D~~n~i~va~AtE~s~~ 1066 (1112)
|+..+.++...+.-....-..+.|
T Consensus 105 rvkvq~~~g~~q~v~~~~~~~ssf 128 (170)
T d1qzga_ 105 QITLRSYRDRTQGLSKDQFRYALW 128 (170)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EEEEEEECCceEEEecCcceEEEE
Confidence 999998886554444333345554
No 12
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=62.72 E-value=35 Score=29.95 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=60.9
Q ss_pred CCCCCccceEEEEEEeCCcccc----cccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccccccCceE
Q 001266 964 VPLSSEFDIAAFVVHVGDVYED----SQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINYNLVGSTV 1039 (1112)
Q Consensus 964 ~P~~~EfD~vG~Vv~Vg~~~~~----~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~~~~G~vV 1039 (1112)
.|--..+++.|.|+.+.+.... +..+-+.+.|+|.+- -+-+.||.... +.+.+|.+|
T Consensus 9 ~pg~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG-----------~i~~~~W~~~~--------~~l~~Gdvv 69 (115)
T d1o7ia_ 9 KPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG-----------RVKLTLWGKHA--------GSIKEGQVV 69 (115)
T ss_dssp CTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE-----------EEEEEEEGGGT--------TCCCTTCEE
T ss_pred CCCCCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCC-----------eEEEEEecccc--------ccCCCCCEE
Confidence 3433579999999999885432 233456788999872 36667885422 246789999
Q ss_pred EeeceEEeccCCCCCeeEEEeccceeeEecCCC
Q 001266 1040 GFCNLIKRPKDHLNHIWVAEATENSSYFLSFDF 1072 (1112)
Q Consensus 1040 ~f~NL~~r~~D~~n~i~va~AtE~s~~sl~~~~ 1072 (1112)
.+.|...+.+. .-...-...+|.+...++.
T Consensus 70 ~i~na~v~~~~---g~~el~~~~~s~i~~~~d~ 99 (115)
T d1o7ia_ 70 KIENAWTTAFK---GQVQLNAGSKTKIAEASED 99 (115)
T ss_dssp EEEEEEEEEET---TEEEEEECTTCEEEECCCT
T ss_pred EEeeEEEEEEC---CeEEEEECCCeEEEECCCc
Confidence 99999998765 4455666777777776664
No 13
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=48.13 E-value=21 Score=31.54 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=36.3
Q ss_pred ceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeCCc
Q 001266 886 REGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPLSP 940 (1112)
Q Consensus 886 ~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L~~ 940 (1112)
..+.+++|+. ....|++|+.|.|.|...... .+.+.|++. +.++-+.+..
T Consensus 49 G~i~~~~W~~---~~~~l~~Gdvv~i~na~v~~~-~g~~el~~~-~~s~i~~~~d 98 (115)
T d1o7ia_ 49 GRVKLTLWGK---HAGSIKEGQVVKIENAWTTAF-KGQVQLNAG-SKTKIAEASE 98 (115)
T ss_dssp EEEEEEEEGG---GTTCCCTTCEEEEEEEEEEEE-TTEEEEEEC-TTCEEEECCC
T ss_pred CeEEEEEecc---ccccCCCCCEEEEeeEEEEEE-CCeEEEEEC-CCeEEEECCC
Confidence 5789999974 345799999999999866553 466777764 4566666653
No 14
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.61 E-value=75 Score=27.61 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred cccccCCCCCCCccceEEEEEEeCCcc--cc--cccceeEEEEecCcccccccccccCceEEEEeecCCcCCCCCCcccc
Q 001266 957 LISNLGEVPLSSEFDIAAFVVHVGDVY--ED--SQQKKQWVFVTDGSMLELQLEDLSKSLLAISISSPYIDDDSFSPINY 1032 (1112)
Q Consensus 957 ~~s~l~~~P~~~EfD~vG~Vv~Vg~~~--~~--~~qk~QwvflaD~s~~~~~~~~~~~~lLaI~f~~~~~~~~sf~~~~~ 1032 (1112)
++++| .|--.-+=+.|-|++..+.. .. +.++...+-|+|.+. . +-+.+|....+ -| .+.
T Consensus 4 PI~~L--~p~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G----------~-I~~t~~~~~~~--~f--~~~ 66 (116)
T d1jmca1 4 PIASL--TPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG----------E-IRATAFNEQVD--KF--FPL 66 (116)
T ss_dssp CGGGC--CTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC----------E-EEEEEEHHHHH--HH--GGG
T ss_pred eHHHc--CCCCCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC----------C-EEEEEchhhhh--hh--Hhh
Confidence 34444 34445577889999988732 21 223456788999872 2 45566644332 12 246
Q ss_pred cccCceEEeeceEEec----cCCCCCeeEEEeccceeeEecCCCCCC
Q 001266 1033 NLVGSTVGFCNLIKRP----KDHLNHIWVAEATENSSYFLSFDFPTC 1075 (1112)
Q Consensus 1033 ~~~G~vV~f~NL~~r~----~D~~n~i~va~AtE~s~~sl~~~~~~~ 1075 (1112)
+.+|.++-++|+.++. |....+=+..-.+.+|++...++.+..
T Consensus 67 l~~G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~d~~~i 113 (116)
T d1jmca1 67 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHL 113 (116)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCSCC
T ss_pred cccCCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECCCCCCC
Confidence 8899999999998864 444445566778999999998886544
No 15
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.35 E-value=41 Score=30.97 Aligned_cols=50 Identities=10% Similarity=-0.076 Sum_probs=36.4
Q ss_pred CceEEEEEeCCChhhhcccccccEEEEEeeecCCCCCCceeEeeeecceeeeeCC
Q 001266 885 SREGIITIWNPAEKQQCELVEGQAYAILGLIPMNSDSNTLYLQARGSTTKWQPLS 939 (1112)
Q Consensus 885 ~~~aiLTIWrPsedl~~~L~EG~ry~V~~L~ps~~~s~~l~L~~r~~~Trw~~L~ 939 (1112)
...+.+++|+... +.|++|..|+|.|......+ +.+.|.+. +.++-+.++
T Consensus 72 TG~i~~tlW~~~~---~~l~~Gd~v~i~na~v~~~~-G~~~L~vg-~~g~I~~~~ 121 (145)
T d1wjja_ 72 TGCILFTARNDQV---DLMKPGATVILRNSRIDMFK-GTMRLGVD-KWGRIEATG 121 (145)
T ss_dssp SCEEEEEECTTHH---HHTCTTCEEEEEEEEEEEET-TEEEEEEC-TTCCBCCCS
T ss_pred CCeEEEEEEeccc---cccCcCCEEEEeeEEEEEEC-CEEEEEEC-CCEEEEECC
Confidence 4689999999643 45999999999998766654 56777664 456666655
No 16
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.21 E-value=35 Score=29.88 Aligned_cols=53 Identities=15% Similarity=0.027 Sum_probs=32.6
Q ss_pred ceEEEEEeCCChhh-hcccccccEEEEEeee--cCCCC----CCceeEeeeecceeeeeCC
Q 001266 886 REGIITIWNPAEKQ-QCELVEGQAYAILGLI--PMNSD----SNTLYLQARGSTTKWQPLS 939 (1112)
Q Consensus 886 ~~aiLTIWrPsedl-~~~L~EG~ry~V~~L~--ps~~~----s~~l~L~~r~~~Trw~~L~ 939 (1112)
..+.+++|+..-+. ...|+||+.|.|.+.. +.... +....|+.. ..|.-.+.+
T Consensus 49 G~I~~t~~~~~~~~f~~~l~~G~vy~i~~~~V~~~~~~y~~~~~~yei~f~-~~T~I~~~~ 108 (116)
T d1jmca1 49 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN-NETSVMPCE 108 (116)
T ss_dssp CEEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCCCCCSEEEECC-TTCEEEECC
T ss_pred CCEEEEEchhhhhhhHhhcccCCEEEEcceEEEEccCcEeccCCcEEEEEC-CCcEEEECC
Confidence 36899999755443 4679999999999853 33321 123344443 345555554
Done!